Citrus Sinensis ID: 041473
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.977 | 0.472 | 0.434 | 1e-102 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.991 | 0.469 | 0.441 | 2e-95 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.991 | 0.472 | 0.474 | 4e-94 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.969 | 0.403 | 0.365 | 4e-72 | |
| Q9ZUI0 | 980 | Putative leucine-rich rep | no | no | 0.963 | 0.479 | 0.367 | 1e-70 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.963 | 0.418 | 0.371 | 6e-66 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.981 | 0.458 | 0.326 | 1e-65 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.905 | 0.387 | 0.382 | 2e-65 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.934 | 0.475 | 0.343 | 4e-64 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.913 | 0.357 | 0.346 | 6e-62 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
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Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/479 (43%), Positives = 302/479 (63%), Gaps = 2/479 (0%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L G VP +LGSL+ L L ++ NN+ G++P+S GNL+ LE L+ + N G+IP ++
Sbjct: 148 NRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVA 207
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+L ++ S+ AN SG P ++YNLSSL LL N G L D+G LPNL N G
Sbjct: 208 QLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMG 267
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
N FTG IP ++SN S L RL + +N +G +P+ N+ L+ + N LG+ DLE
Sbjct: 268 GNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLE 327
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
F++SL N ++LE + I N GG LP S+ NLS +L +G + G+IP +GNL+NL
Sbjct: 328 FLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINL 387
Query: 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
+ L L N +G + S+G L L+ L L N+ G IP+ +GN+T+L TL N EG
Sbjct: 388 QKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEG 447
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
+P+SLG C +L+ L + +N L GTIP E++ + L + LD+S N L G LP + G L+N
Sbjct: 448 IVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQN 506
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
LG L + +NKLSG++P +LG+C+ +E L + GN F G+IP L G++ +DLS N+LS
Sbjct: 507 LGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGVKEVDLSNNDLS 565
Query: 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
G IP+YF +F L+ LNLS N+ EG+VP+KG+F N++ +S+ GN++LCGGI L C
Sbjct: 566 GSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPC 624
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
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Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 215/487 (44%), Positives = 288/487 (59%), Gaps = 3/487 (0%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L VP +LGSLSKL L + NNL+G P+S GNL+SL+ L A NQ G+IP+ ++
Sbjct: 155 NHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVA 214
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +M N SG P ++YN+SSL L N G+L +D G+ LPNL L G
Sbjct: 215 RLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLG 274
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDL 180
NQFTG IP +++N S+L R I N SG +P S L L + N LGN L
Sbjct: 275 TNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGL 334
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
EF+ ++ N ++LE +++ N GG LP S+ NLST L +G N + G IP +GNLV+
Sbjct: 335 EFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVS 394
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L+ L L N +G + S G L LQ + L N GEIPS GN+T L L N
Sbjct: 395 LQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFH 454
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IP SLG+C+ L+ L + N L GTIP E++ + SL+ Y+DLS N L G P G L+
Sbjct: 455 GRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHFPEEVGKLE 513
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L L S NKLSG++P ++G C+ +E L M GN F G IP S L ++N+D S NNL
Sbjct: 514 LLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKNVDFSNNNL 572
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SGRIP+Y + L+NLNLS N FEG VP GVF N++A+S+ GN N+CGG+ E+ L C
Sbjct: 573 SGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPC 632
Query: 481 SIKESKQ 487
++ S +
Sbjct: 633 IVQASPR 639
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
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Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 231/487 (47%), Positives = 312/487 (64%), Gaps = 3/487 (0%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L VP + GSLSKL L++ NNL+G+ P+S GNL+SL+ L NQ G+IP ++
Sbjct: 163 NHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIA 222
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
LK+M NK +G P IYNLSSL L N G+L D G LPNL++L G
Sbjct: 223 RLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMG 282
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDL 180
N FTG IP ++SN S+L +L I N +GK+P S L L + + N LGN DL
Sbjct: 283 INSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDL 342
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
+F+ +L N S+L+ + + N GG LP + NLST+L ++G N + G+IP G+GNLV+
Sbjct: 343 DFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVS 402
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L+ LDLG+N TG++ S+G+L +L+++ L N GEIPSS+GN++ L L N E
Sbjct: 403 LQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFE 462
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
GSIPSSLG C L+ L+L N L G+IP E++ L SL + L++S N L GPL + G LK
Sbjct: 463 GSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLK 521
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L LDVS NKLSG+IP +L +C+ LE L++ GN F G IP L G++ LDLS+NNL
Sbjct: 522 FLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP-DIRGLTGLRFLDLSKNNL 580
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG IP+Y NF LQNLNLS N+F+G VP +GVF N+SA+S+ GN NLCGGI L L C
Sbjct: 581 SGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPC 640
Query: 481 SIKESKQ 487
S++ ++
Sbjct: 641 SVELPRR 647
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 195/533 (36%), Positives = 275/533 (51%), Gaps = 60/533 (11%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N+L GK+P +LG+L +L+ L ++ N L+ IPSS L+ L L + N VG I E +
Sbjct: 274 NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG 333
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L+ + + +N +GE P SI NL +L++L N + G LP+D+G L NL L+
Sbjct: 334 FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL-LTNLRNLSAH 392
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
+N TGPIP+SISN + L L + N +G++P L +S NH DD
Sbjct: 393 DNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDD-- 450
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
+ N S LE + ++ NN G L +G L +L+ V N L G IP +GNL +L
Sbjct: 451 ----IFNCSNLETLSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGPIPREIGNLKDL 505
Query: 242 ELLDLGDNQFTGRILGSIGDLQKLQRLR------------------------LKGNKFLG 277
+L L N FTGRI + +L LQ LR L NKF G
Sbjct: 506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565
Query: 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIG-LSS 336
+IP+ L L LS +GN+ GSIP+SL L D+S+N LTGTIP E++ L +
Sbjct: 566 QIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKN 625
Query: 337 LSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL------- 389
+ +YL+ S N L G +P G L+ + +D+S N SG IP SL +C + L
Sbjct: 626 MQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNL 685
Query: 390 -------VMNG-----------NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431
V G N F G IP SF ++ + +LDLS NNL+G IP+ N
Sbjct: 686 SGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANL 745
Query: 432 FFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCSIKE 484
L++L L+SN+ +G VP GVF N +A L GN +LCG S+ L C+IK+
Sbjct: 746 STLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG--SKKPLKPCTIKQ 796
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1 | Back alignment and function description |
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Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 185/503 (36%), Positives = 278/503 (55%), Gaps = 33/503 (6%)
Query: 3 ELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNL-SSLEFLSAAVNQFVGQIPETLS 61
+L G++ + +L+ L L + N G+IP G+L +L+ LS + N G IP+ L
Sbjct: 77 DLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELG 136
Query: 62 ELKRMRSIGFGANKLSGEIPFSIY---NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118
L R+ + G+N+L+G IP ++ + SSL +D N L G +P + L L L
Sbjct: 137 LLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFL 196
Query: 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNH-LGNG 175
+N+ TG +P+S+SN++NL + ++ N SG++PS + + +LQ + S NH + +
Sbjct: 197 LLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHN 256
Query: 176 EKDDLE-FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIP-- 232
+LE F +SL N+S L+ +E++ N+ GG + SV +LS L + + N++ G+IP
Sbjct: 257 NNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPE 316
Query: 233 ----------------------SGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270
L L LE + L +N TG I +GD+ +L L +
Sbjct: 317 ISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDV 376
Query: 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
N G IP S GNL+ L L GN L G++P SLGKC NL +LDLS+NNLTGTIP E
Sbjct: 377 SRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVE 436
Query: 331 VIG-LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389
V+ L +L +YL+LS N L+GP+P + + +D+S N+LSG+IP LGSC+ LE L
Sbjct: 437 VVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHL 496
Query: 390 VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449
++ N F +PSS L ++ LD+S N L+G IP F+ L++LN S N G V
Sbjct: 497 NLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVS 556
Query: 450 IKGVFSNSSAISLDGNDNLCGGI 472
KG FS + S G+ LCG I
Sbjct: 557 DKGSFSKLTIESFLGDSLLCGSI 579
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 181/487 (37%), Positives = 254/487 (52%), Gaps = 17/487 (3%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N+ G +P +G+L+ L TLA++ N+L G IPS GN+ SL+ L NQ G IP+ L
Sbjct: 263 NKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELG 322
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+L ++ I F N LSGEIP + +S L LL N+L G +P+++ L NL L+
Sbjct: 323 KLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-KLRNLAKLDLS 381
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYK-LQRVSFSLNHLGNGEKDDL 180
N TGPIP N +++ +L + N SG +P LY L V FS N L
Sbjct: 382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSG------ 435
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
+ + S L ++ + N G +P V + L+ VG N+L G P+ L LVN
Sbjct: 436 KIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVG-NRLTGQFPTELCKLVN 494
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L ++L N+F+G + IG QKLQRL L N+F +P+ + L+ L T + N L
Sbjct: 495 LSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLT 554
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IPS + CK L LDLS N+ G++P E+ L L I L LS+N+ +G +P G L
Sbjct: 555 GPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSGNIPFTIGNLT 613
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF--FQGNIPSSFSSLRGIQNLDLSRN 418
+L L + N SG IP LG L Q+ MN ++ F G IP +L + L L+ N
Sbjct: 614 HLTELQMGGNLFSGSIPPQLGLLSSL-QIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNN 672
Query: 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLS 478
+LSG IP FEN L N S N+ G++P +F N + S GN LCGG HL
Sbjct: 673 HLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----HLR 728
Query: 479 TCSIKES 485
+C S
Sbjct: 729 SCDPSHS 735
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/490 (32%), Positives = 259/490 (52%), Gaps = 11/490 (2%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N L G +P ++G+L LR L + NNL+G+IPSSFGNL ++ L+ NQ G+IP +
Sbjct: 223 INSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEI 282
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+ + ++ NKL+G IP ++ N+ +L++L +NQL GS+P ++G + ++ L
Sbjct: 283 GNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG-EMESMIDLEI 341
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDD 179
N+ TGP+P S + L L ++ N SG +P + N +L + N+ D
Sbjct: 342 SENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPD- 400
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLV 239
++ +LE + + N+F G +P+S+ + + L R N G+I G
Sbjct: 401 -----TICRGGKLENLTLDDNHFEGPVPKSLRDCKS-LIRVRFKGNSFSGDISEAFGVYP 454
Query: 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRL 299
L +DL +N F G++ + QKL L N G IP + N+T L L NR+
Sbjct: 455 TLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRI 514
Query: 300 EGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGIL 359
G +P S+ + L L+ N L+G IP+ + L++L YLDLS N+ + +P L
Sbjct: 515 TGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLE-YLDLSSNRFSSEIPPTLNNL 573
Query: 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419
L +++S N L IP L +L+ L ++ N G I S F SL+ ++ LDLS NN
Sbjct: 574 PRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNN 633
Query: 420 LSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELH-LS 478
LSG+IP F++ L ++++S N+ +G +P F N+ + +GN +LCG ++ L
Sbjct: 634 LSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLK 693
Query: 479 TCSIKESKQS 488
CSI SK+S
Sbjct: 694 PCSITSSKKS 703
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 173/452 (38%), Positives = 241/452 (53%), Gaps = 10/452 (2%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNN-LSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N L G +P +LG LS L + + N +SG+IPS G+ S+L L A G +P +L
Sbjct: 187 NLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSL 246
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+LK++ ++ +SGEIP + N S L L N L GS+P +IG L LE L
Sbjct: 247 GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIG-QLTKLEQLFL 305
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL 180
N G IP I N SNL + + N SG +PS + R+SF + + K
Sbjct: 306 WQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPS-----SIGRLSFLEEFMISDNKFSG 360
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
+++ N S L +++ N G++P +G L T+L F +NQL G+IP GL + +
Sbjct: 361 SIPTTISNCSSLVQLQLDKNQISGLIPSELGTL-TKLTLFFAWSNQLEGSIPPGLADCTD 419
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L+ LDL N TG I + L+ L +L L N G IP +GN + L L NR+
Sbjct: 420 LQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRIT 479
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IPS +G K + LD S+N L G +P E+ S L + +DLS N L G LP+ L
Sbjct: 480 GEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLEGSLPNPVSSLS 538
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L VLDVS N+ SG+IP SLG V L +L+++ N F G+IP+S G+Q LDL N L
Sbjct: 539 GLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNEL 598
Query: 421 SGRIPKYFENFFFLQ-NLNLSSNHFEGEVPIK 451
SG IP + L+ LNLSSN G++P K
Sbjct: 599 SGEIPSELGDIENLEIALNLSSNRLTGKIPSK 630
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/507 (34%), Positives = 250/507 (49%), Gaps = 51/507 (10%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N G++ +G S LR L + N L+G +P GNLS LEFL+ A NQ G +P L
Sbjct: 155 NMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELG 214
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
++K ++ I G N LSGEIP+ I LSSL+ LD N L G +P +G L LE +
Sbjct: 215 KMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLG-DLKKLEYMFLY 273
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
N+ +G IP SI + NL+ L N SG++P L
Sbjct: 274 QNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPEL------------------------- 308
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
+ LE++ + NN G +PE V +L RLK + +N+ G IP+ LG NL
Sbjct: 309 ----VAQMQSLEILHLFSNNLTGKIPEGVTSLP-RLKVLQLWSNRFSGGIPANLGKHNNL 363
Query: 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
+LDL N TG++ ++ D L +L L N +IP S+G L + + N G
Sbjct: 364 TVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSG 423
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPT------EVIGLSSLSIY--------------L 341
+P K + + LDLSNNNL G I T E++ LS + L
Sbjct: 424 KLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGELPDFSRSKRLKKL 483
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401
DLS+N+++G +P + LD+SEN+++G IP L SC L L ++ N F G IP
Sbjct: 484 DLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIP 543
Query: 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAIS 461
SSF+ + + +LDLS N LSG IPK N L +N+S N G +P G F +A +
Sbjct: 544 SSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATA 603
Query: 462 LDGNDNLCGGISELHLSTCSIKESKQS 488
++GN +LC S L C + + +
Sbjct: 604 VEGNIDLCSENSASGLRPCKVVRKRST 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 251/470 (53%), Gaps = 24/470 (5%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N+L G++P +LGSL +R+L + N L G+IP + GNL +L+ L+ A + G IP L
Sbjct: 129 NQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLG 188
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L R++S+ N L G IP + N S L++ N L G++P+++G L NLE+LN
Sbjct: 189 RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELG-RLENLEILNLA 247
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDL 180
NN TG IP+ + S L L++ N G +P SL +L LQ + S N+L ++
Sbjct: 248 NNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEF 307
Query: 181 EFVSSLV-------------------NASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221
+S L+ N + LE + +S G +P + + LK+
Sbjct: 308 WNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQS-LKQLD 366
Query: 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPS 281
+ NN L G+IP L LV L L L +N G + SI +L LQ L L N G++P
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPK 426
Query: 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341
+ L L L NR G IP +G C +L ++D+ N+ G IP + L L++ L
Sbjct: 427 EISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNL-L 485
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401
L +N+L G LP++ G L +LD+++N+LSG IP+S G LEQL++ N QGN+P
Sbjct: 486 HLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLP 545
Query: 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451
S SLR + ++LS N L+G I + +L + ++++N FE E+P++
Sbjct: 546 DSLISLRNLTRINLSHNRLNGTIHPLCGSSSYL-SFDVTNNGFEDEIPLE 594
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| 224121306 | 966 | predicted protein [Populus trichocarpa] | 0.993 | 0.502 | 0.578 | 1e-138 | |
| 255577438 | 1028 | receptor-kinase, putative [Ricinus commu | 0.915 | 0.434 | 0.534 | 1e-135 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.987 | 0.253 | 0.532 | 1e-133 | |
| 224127492 | 1022 | predicted protein [Populus trichocarpa] | 0.993 | 0.474 | 0.543 | 1e-132 | |
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.987 | 0.463 | 0.530 | 1e-132 | |
| 359486510 | 965 | PREDICTED: probable LRR receptor-like se | 0.995 | 0.503 | 0.562 | 1e-131 | |
| 255581223 | 1015 | receptor-kinase, putative [Ricinus commu | 0.995 | 0.478 | 0.517 | 1e-131 | |
| 224097750 | 1023 | predicted protein [Populus trichocarpa] | 0.858 | 0.409 | 0.530 | 1e-130 | |
| 224115346 | 1017 | predicted protein [Populus trichocarpa] | 0.993 | 0.476 | 0.566 | 1e-129 | |
| 224090977 | 1034 | predicted protein [Populus trichocarpa] | 0.993 | 0.469 | 0.534 | 1e-129 |
| >gi|224121306|ref|XP_002330794.1| predicted protein [Populus trichocarpa] gi|222872596|gb|EEF09727.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/486 (57%), Positives = 353/486 (72%), Gaps = 1/486 (0%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L+G++P + SL L+ L V FN+L+G IPS FGN SSL+ LS N F G +P+TL
Sbjct: 118 NNLIGRIPLEFSSLLNLQLLNVEFNDLTGGIPSFFGNYSSLQVLSTTFNNFGGTLPDTLG 177
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+LK + I GAN L+G IP S+YNLS LS+ FP NQLQG+LPSD+G P L LN G
Sbjct: 178 QLKNLYYISMGANFLTGTIPSSLYNLSFLSIFCFPQNQLQGTLPSDLGNEFPYLVELNVG 237
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
+NQ TG IP S+SN+S L RLTI NGF+G VPSLE ++KL +S S NHLG GE DL+
Sbjct: 238 DNQITGSIPISLSNSSYLERLTIAINGFTGNVPSLEKMHKLWWLSISTNHLGTGEARDLD 297
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
F+S++ NA+ L++M I++NNFGGMLP ++ N T L T+ +N++FG+IP+GLGNLVNL
Sbjct: 298 FLSTVSNATSLQLMAINVNNFGGMLPSAITNF-TSLSIMTLDSNRIFGSIPAGLGNLVNL 356
Query: 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
E+L +G NQFTG I IG LQ+L++L L+GNK G IPSS GNLTLL L + L+G
Sbjct: 357 EMLYMGKNQFTGDIPEEIGKLQQLKKLGLQGNKLSGNIPSSFGNLTLLTHLYMYQSSLKG 416
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
SIP LGKC NL+LL+LS NNLTG IP EV+ + SL+IY+DLS+N L G LP+ G L N
Sbjct: 417 SIPPELGKCLNLLLLNLSQNNLTGAIPKEVLSIPSLTIYMDLSRNNLIGSLPTEVGTLTN 476
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
LG+LD+S N LSGEIP +LGSCVRLE L M NFFQG IPSSF SLRG+Q L+LS NNL+
Sbjct: 477 LGILDISHNMLSGEIPGTLGSCVRLESLFMQNNFFQGTIPSSFISLRGLQVLNLSHNNLT 536
Query: 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCS 481
G IP +F +F L LNLS N+FEG VP GVF NSSA+S+ GN LCGGI+E L C+
Sbjct: 537 GSIPDFFLDFRALATLNLSFNNFEGLVPTDGVFRNSSAVSVVGNSKLCGGIAEFQLLECN 596
Query: 482 IKESKQ 487
K +K+
Sbjct: 597 FKGTKK 602
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/486 (53%), Positives = 337/486 (69%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L GK+P +L SLSKL+ N L+GEI SF NLSSLE + N F G+IP ++
Sbjct: 158 NNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIG 217
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+LK +++ G + SG IP SI+NLSSL++L P+NQL G+LP D+G +LP LEVL
Sbjct: 218 QLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLY 277
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
N+F+G IP +ISNASNL+ L + +N F+GKVPSL L+ L + N+LGNGE DDL
Sbjct: 278 ANKFSGSIPPTISNASNLVALDVSQNNFTGKVPSLARLHNLSYIGIHKNNLGNGEDDDLS 337
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
F+ +L N + LE++ I+ NN GG+LPE + N ST+L G N++ G IPS + NL+ L
Sbjct: 338 FLYTLANNTNLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRL 397
Query: 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
E L N+ TG I S+G L+ L +L L N G IPSS+GN+T L T+S + N LEG
Sbjct: 398 EALGFERNELTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEG 457
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
SIPSSLG C+ ++L+DLS NNL+GTIP E+I + SLSI LDLS+NQ G LP G L N
Sbjct: 458 SIPSSLGNCQQMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVN 517
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
LG LDVS+NKLSGEIP SLGSC RLE L + GN FQG IP S SSLRGI +L+LS NNL+
Sbjct: 518 LGYLDVSKNKLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDLNLSHNNLT 577
Query: 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCS 481
G+IP +F F L+ L+LS N FEGEVP +GVF N+SA S+ GN NLCGGI E++L C+
Sbjct: 578 GQIPNFFAEFKSLEKLDLSYNDFEGEVPAEGVFKNASAFSISGNKNLCGGIPEINLPRCT 637
Query: 482 IKESKQ 487
+ +S +
Sbjct: 638 LNKSMK 643
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/490 (53%), Positives = 344/490 (70%), Gaps = 8/490 (1%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L+G++P LGS K+ + +H+NNL+G +P S GNL+S++ LS AVN G IP+ L
Sbjct: 193 FNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQAL 252
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L+ + +G G N SG IP S+YN+SSL + P N+L GSLP D+ FTLPNL+VLN
Sbjct: 253 GQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNI 312
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP----SLENLYKLQRVSFSLNHLGNGE 176
GNN FTGP+P+S+SNASNL+ I + F+GKV + NL+ L S N LG GE
Sbjct: 313 GNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLAS---NPLGKGE 369
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236
DDL F++SL+ L+++++S + FGG+LP S+ NLST+L + + NNQL G IP G+G
Sbjct: 370 ADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIG 429
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
NLVNL L L +N FTG I IG+LQ L R+ L N+ G IPSS+GN+T L++L +
Sbjct: 430 NLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQN 489
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF 356
N L G IPSS G L LDLS N+L GTIP +V+ L SL+I L+L++NQL G LPS
Sbjct: 490 NHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEV 549
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
LKNLG LDVSENKLSGEIP+ LGSC+ LE L M GNFF+G+IP SF SLRG+ +LDLS
Sbjct: 550 RKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLS 609
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELH 476
RNNLSG+IP++ + L NLNLS N+FEG++P KGVF+N+++ S+ GN+ LCGGI ELH
Sbjct: 610 RNNLSGQIPEFLQQ-LSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPELH 668
Query: 477 LSTCSIKESK 486
L C + + K
Sbjct: 669 LPACPVTKPK 678
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 264/486 (54%), Positives = 333/486 (68%), Gaps = 1/486 (0%)
Query: 4 LVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSEL 63
L GK+P +LG LSKL+ L + NN GEIP SFGNLS++ + ++N G IP +L
Sbjct: 160 LTGKLPAELGLLSKLQVLTIELNNFVGEIPYSFGNLSAINAIYGSINNLEGSIPNVFGQL 219
Query: 64 KRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123
KR++ + GAN LSG IP SI+NLSSL+LL FPVNQL GSLP +G TLPNL+V N N
Sbjct: 220 KRLKILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTN 279
Query: 124 QFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFV 183
QF G IPA+ SNASNL+ I N F+GKVP L + + LQ + N+LG GE +DL FV
Sbjct: 280 QFGGLIPATFSNASNLLSFQIGSNNFNGKVPPLSSSHDLQVLGVGDNNLGKGENNDLNFV 339
Query: 184 SSLVN-ASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLE 242
L N + LE ++ S NNFGG+LPE V N ST+L + T NQ+ G+IP+ +GNL+NLE
Sbjct: 340 YPLANNMTSLEALDTSDNNFGGVLPEIVSNFSTKLMKMTFARNQIRGSIPTQIGNLINLE 399
Query: 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302
L L NQ TG I S+G LQKL L L GNK G IPSS+GN+T L ++ N LEGS
Sbjct: 400 ALGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGS 459
Query: 303 IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362
IP SLG + L+ L LS NNL+G IP E++ + SLS+YL LS+N+L G LP L NL
Sbjct: 460 IPPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNL 519
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422
G LDVS+N+ SGEIP SLGSCV LE L + NF QG IP + SSLR IQ L+LS NNL+G
Sbjct: 520 GYLDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTG 579
Query: 423 RIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCSI 482
+IP++ E+F L++LNLS N FEGEVP++G F N+SAIS+ GN LCGGI +L+L+ C
Sbjct: 580 QIPEFLEDFKLLESLNLSFNDFEGEVPVQGAFQNTSAISIFGNKKLCGGIPQLNLTRCPS 639
Query: 483 KESKQS 488
E S
Sbjct: 640 SEPTNS 645
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 260/490 (53%), Positives = 343/490 (70%), Gaps = 8/490 (1%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L+G++P LGS K+ + +H+NNL+G +P S GNL+S++ LS AVN G IP+ L
Sbjct: 162 FNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQAL 221
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L+ + +G G N SG IP S+YN+SSL + P N+L GSLP D+ FTLPNL+VLN
Sbjct: 222 GQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNI 281
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP----SLENLYKLQRVSFSLNHLGNGE 176
GNN FTG +P+S+SNASNL+ I + F+GKV + NL+ L S N LG GE
Sbjct: 282 GNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLAS---NPLGKGE 338
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236
DDL F++SL+ L+++++S + FGG+LP S+ NLST+L + + NNQL G IP G+G
Sbjct: 339 ADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIG 398
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
NLVNL L L +N FTG I IG+LQ L R+ L N+ G IPSS+GN+T L++L +
Sbjct: 399 NLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQN 458
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF 356
N L G IPSS G L LDLS N+L GTIP +V+ L SL+I L+L++NQL G LPS
Sbjct: 459 NHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEV 518
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
LKNLG LDVSENKLSGEIP+ LGSC+ LE L M GNFF+G+IP SF SLRG+ +LDLS
Sbjct: 519 RKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLS 578
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELH 476
RNNLSG+IP++ + L NLNLS N+FEG++P KGVF+N+++ S+ GN+ LCGGI ELH
Sbjct: 579 RNNLSGQIPEFLQQ-LSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPELH 637
Query: 477 LSTCSIKESK 486
L C + + K
Sbjct: 638 LPACPVTKPK 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486510|ref|XP_002271317.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 274/487 (56%), Positives = 346/487 (71%), Gaps = 1/487 (0%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
+N LVGK+P +LGSLSKL+ L +H N+LSG IP SFGNLSSLE LSA N VG IP +L
Sbjct: 90 WNRLVGKIPAELGSLSKLQYLFIHANSLSGGIPRSFGNLSSLERLSATQNNIVGTIPASL 149
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L + + AN LSG IP S+ NLSSL N L G+LPS++G TLPNL+ L+
Sbjct: 150 FQLITLTHVALNANGLSGTIPPSLSNLSSLIFFAVSFNHLHGNLPSNLGITLPNLQDLSL 209
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL 180
N+FTG IP S+SNASNL + N +GKVPSLE L +L S + N+LGNGE +DL
Sbjct: 210 SGNRFTGSIPVSLSNASNLEYFSCNGNNLTGKVPSLEKLQRLHFFSVTSNNLGNGEIEDL 269
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
F+SSL N S LE++ +++NNFGG+LPES+GN ST+L + N++ G+IP+G+GNLV+
Sbjct: 270 GFLSSLTNVSNLEVLALNVNNFGGVLPESIGNWSTKLATLLLDGNKIGGSIPAGIGNLVS 329
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
LE L++ +NQ +G I IG LQ L+ L L NK G +PSS+GNL L L N +
Sbjct: 330 LERLEMWENQLSGSIPVDIGKLQNLRVLMLIKNKLSGILPSSLGNLENLIQLVLGRNYFQ 389
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IPSSLGKC+NL+ LDLS NNL+GTIP +V+ LSSLSI LD+S N+L G LP G LK
Sbjct: 390 GKIPSSLGKCQNLLFLDLSLNNLSGTIPPQVVSLSSLSISLDISDNRLTGALPIEVGNLK 449
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
NLGVLDVS N LSG IP+S+GSC LE L M GNFFQG+IPSSFSSLRGI+ LDLS NNL
Sbjct: 450 NLGVLDVSNNMLSGGIPSSVGSCTSLEYLSMKGNFFQGSIPSSFSSLRGIRILDLSHNNL 509
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG+IP++ ++ F Q +NLS N FEG +P +GVF N SA S+ GN LCGGI E L C
Sbjct: 510 SGKIPEFLQDIHF-QLVNLSYNDFEGILPTEGVFKNVSATSIMGNSKLCGGIPEFQLPKC 568
Query: 481 SIKESKQ 487
+++E K+
Sbjct: 569 NLQEPKK 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/487 (51%), Positives = 337/487 (69%), Gaps = 1/487 (0%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
+N+L G++P +L L+KL+ +++ N SG IP S GNLSSL+ LSA N G IP+ +
Sbjct: 156 YNQLEGEIPEELSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAPENYLSGNIPDAI 215
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L + I N LSG IP SIYNLSS++ L+ NQ+QG LPS++G TLPNL+V
Sbjct: 216 GQLNNLIFISLSVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNLGITLPNLQVFAI 275
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL 180
N F G IP+S SNASNL+ L + +N +G+VPSLE L+ LQ + N+LG E +DL
Sbjct: 276 ARNDFIGSIPSSFSNASNLVWLIMSENKLTGRVPSLEQLHNLQILGLGYNYLG-LEANDL 334
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
+FVSSLVN + L +EI N F G+LPES+ N ST + + N + G IPS + NLVN
Sbjct: 335 DFVSSLVNCTNLWRLEIHNNKFHGVLPESISNFSTTFSQLVIAENNIAGRIPSSISNLVN 394
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
LE L++ +NQ +G I + G+L L+ L L GNK G IPSS+GNLT+L TLSF N L+
Sbjct: 395 LERLEMANNQLSGNIPSNFGNLNMLKVLHLFGNKLSGTIPSSLGNLTMLLTLSFYDNNLQ 454
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IPSSL +C+NL++LDL+ NNL+G+IP +V GLSSLSI LDLS N G +P G LK
Sbjct: 455 GRIPSSLAECENLMVLDLAKNNLSGSIPLQVFGLSSLSIALDLSANHFTGVIPMEVGNLK 514
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+L L +S+N LSG IP+SLGSC++LE L + GNFF G +PSS SSLRG++ LD S NNL
Sbjct: 515 DLEQLGISDNMLSGRIPDSLGSCIKLEVLALQGNFFDGLVPSSLSSLRGLRVLDFSSNNL 574
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG IP++ ++F L++LNLS N+FEG VP++G+F N+S + GND LCGGI E HL+ C
Sbjct: 575 SGEIPEFLQSFDLLESLNLSYNNFEGRVPVEGIFRNASTTLVMGNDKLCGGIPEFHLAKC 634
Query: 481 SIKESKQ 487
+ K K+
Sbjct: 635 NAKSPKK 641
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/479 (53%), Positives = 333/479 (69%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L GK+P + GSLSKL+ L N+L GEIP S+GNLS L+ + N G IP+++
Sbjct: 156 NNLTGKLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSELQIIRGVRNNLQGGIPDSIG 215
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+LKR+ FG N LSG IP SIYN+SSL P+NQL G LP ++G TLPNL+ N
Sbjct: 216 QLKRLADFTFGVNSLSGTIPSSIYNMSSLVRFSAPLNQLYGILPPELGLTLPNLDTFNIL 275
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
+NQF G IP+++SNAS + L ++ N F+GKVPSL L+ LQR+ + N+LGN E DDL
Sbjct: 276 SNQFRGLIPSTLSNASKISDLQLRNNSFTGKVPSLAGLHNLQRLVLNFNNLGNNEDDDLG 335
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
F+ L N + LE++ I+ NNFGG+LPE V N ST+L+ +G N L G+IP+ +G L+ L
Sbjct: 336 FLYPLANTTSLEILAINHNNFGGVLPEIVCNFSTKLRIMIIGENNLRGSIPTEIGKLIGL 395
Query: 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
+ L L NQ TG I SIG LQ+L + GNK G IPSS+GN+T L + F N L+G
Sbjct: 396 DTLGLELNQLTGIIPSSIGKLQRLGVFNINGNKISGNIPSSLGNITSLLEVYFFANNLQG 455
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
IPSSLG C+NL++L L NNL+G+IP EV+G+SSLS+YLDL++NQL GPLPS G L +
Sbjct: 456 RIPSSLGNCQNLLMLRLDQNNLSGSIPKEVLGISSLSMYLDLAENQLIGPLPSEVGKLVH 515
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
LG L+V +N+LSGEIP L SCV LE L + NFFQG+IP S SSLR +Q L+LS NNLS
Sbjct: 516 LGGLNVYKNRLSGEIPGILSSCVSLEHLNLGPNFFQGSIPESLSSLRALQILNLSHNNLS 575
Query: 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
G+IPK+ F L +L+LS N+ EGEVP++GVF+ +S S+ GN LCGG +L+LS C
Sbjct: 576 GKIPKFLAEFKLLTSLDLSFNNLEGEVPVQGVFARASGFSMLGNKKLCGGRPQLNLSRC 634
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 276/487 (56%), Positives = 340/487 (69%), Gaps = 2/487 (0%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N LVGK+P +L SLSKL L +H NNLSG IP GNL+SL +SAA N F G+IP+TL
Sbjct: 162 NNLVGKIPAELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLG 221
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+LK + S+G G N LSG IP IYNLS+LS+L NQLQG LPSDIG +LPNL+ +
Sbjct: 222 QLKNLESLGLGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIR 281
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDL 180
NQF+G IP SISN+SNL L N FSGK+ + L L VS S N +G+GE +L
Sbjct: 282 ANQFSGSIPLSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGEL 341
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
F+ SL+N + L ++I N+F GMLP S+GNLST L +G NQLFG I SG+GNL+N
Sbjct: 342 SFLDSLINCTSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLIN 401
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L L L NQ +G I IG L+ LQR L N+ G IPSS+GNLTLL +GN+L+
Sbjct: 402 LNTLGLEFNQLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQ 461
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G+IPSS+G C+ L+LL LS NNL+G P E+ +SSLS+ LDLS+N NG LPS G LK
Sbjct: 462 GTIPSSIGNCQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLK 521
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+L L+VS N+ SGEIP++L SC LE L M NFFQG+IPSSFS+LRGIQ LDLS NNL
Sbjct: 522 SLAKLNVSYNEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNL 581
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG+IPK+ + F L LNLS N FEGEVP KG F N++AIS+DGN LCGGISEL L C
Sbjct: 582 SGQIPKFLDTFALL-TLNLSFNDFEGEVPTKGAFGNATAISVDGNKKLCGGISELKLPKC 640
Query: 481 SIKESKQ 487
+ K+SK+
Sbjct: 641 NFKKSKK 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090977|ref|XP_002309132.1| predicted protein [Populus trichocarpa] gi|222855108|gb|EEE92655.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 260/486 (53%), Positives = 341/486 (70%), Gaps = 1/486 (0%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN+L G++P +LGSL KL + +H+NNL+G +P S GN+SS+ LS +VN F G IP+ L
Sbjct: 160 FNKLTGQIPYQLGSLQKLERVQLHYNNLNGSVPDSLGNISSVRSLSLSVNNFEGSIPDAL 219
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
LK + +G G N LSG IP +I+NLSSL + P NQL G+LPSD+G TLPNL+VLN
Sbjct: 220 GRLKTLNFLGLGLNNLSGMIPPTIFNLSSLIVFTLPYNQLHGTLPSDLGLTLPNLQVLNI 279
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL 180
G+N F+GP+P SISNASNL+ L I + F+ L L ++ S N LG GE DDL
Sbjct: 280 GHNFFSGPLPVSISNASNLLELDIDTSNFTKVTIDFGGLPNLWSLALSSNPLGKGEADDL 339
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
F+ SL L ++++S ++FGG++P+S+GNLST+L + NQL G+IP+ + NL+N
Sbjct: 340 SFIDSLTKCRNLRLLDLSNSHFGGVIPDSIGNLSTQLFLLKLRGNQLSGSIPTVIENLLN 399
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L L + N +G I +G+L+ LQRL L NK G IPSS+GN+T LF + N++
Sbjct: 400 LAELTVEKNYLSGSIPSVLGNLKMLQRLDLSENKLSGLIPSSLGNITQLFEFHLQKNQIM 459
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
GSIPSS G K L LDLS N L+GTIP EV+GLSSL+I L+L++NQL GPLP L
Sbjct: 460 GSIPSSFGNLKYLQNLDLSQNLLSGTIPKEVMGLSSLTISLNLAQNQLTGPLPPEAQNLM 519
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
NLG LDVSENKL G+IP+SLGSCV LE+L M GNFF+G IP SFSSLRG++++DLSRNNL
Sbjct: 520 NLGYLDVSENKLYGQIPSSLGSCVTLEKLHMQGNFFEGAIPPSFSSLRGLRDMDLSRNNL 579
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG+IP++ + + +LNLS NHFEGEVP +G F N++AISL GN LCGGI +L L C
Sbjct: 580 SGQIPQFLKRLALI-SLNLSFNHFEGEVPREGAFLNATAISLSGNKRLCGGIPQLKLPRC 638
Query: 481 SIKESK 486
+ SK
Sbjct: 639 VVNRSK 644
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.983 | 0.468 | 0.428 | 2.7e-93 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.977 | 0.472 | 0.398 | 1.5e-92 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.987 | 0.467 | 0.408 | 1.2e-90 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.997 | 0.599 | 0.391 | 2.8e-89 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.985 | 0.475 | 0.396 | 1.8e-87 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.981 | 0.467 | 0.395 | 7.2e-84 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.977 | 0.472 | 0.383 | 5.8e-82 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.965 | 0.401 | 0.353 | 2.8e-65 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.944 | 0.404 | 0.345 | 1.9e-61 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.963 | 0.418 | 0.338 | 2.3e-61 |
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 207/483 (42%), Positives = 280/483 (57%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L VP + GSLSKL L++ NNL+G+ P+S GNL+SL+ L NQ G+IP ++
Sbjct: 163 NHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIA 222
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
LK+M NK +G P IYNLSSL L N G+L D G LPNL++L G
Sbjct: 223 RLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMG 282
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDL 180
N FTG IP ++SN S+L +L I N +GK+P S L L + + N LGN DL
Sbjct: 283 INSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDL 342
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
+F+ +L N S+L+ + + N GG LP + NLST+L ++G N + G+IP
Sbjct: 343 DFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVS 402
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
TG++ S+G+L +L+++ L N GEIPSS+GN++ L L N E
Sbjct: 403 LQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFE 462
Query: 301 GSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
GSIPSSLG C G+IP E++ L SL + L++S N L GPL + G LK
Sbjct: 463 GSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLK 521
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L LDVS NKLSG+IP +L +C+ LE L++ GN F G IP L G++ LDLS+NNL
Sbjct: 522 FLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNL 580
Query: 421 SGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG IP+Y S N+F+G VP +GVF N+SA+S+ GN NLCGGI L L C
Sbjct: 581 SGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPC 640
Query: 481 SIK 483
S++
Sbjct: 641 SVE 643
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 191/479 (39%), Positives = 276/479 (57%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L G VP +LGSL+ L L ++ NN+ G++P+S GNL+ LE L+ + N G+IP ++
Sbjct: 148 NRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVA 207
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+L ++ S+ AN SG P ++YNLSSL LL N G L D+G LPNL N G
Sbjct: 208 QLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMG 267
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
N FTG IP ++SN S L RL + +N +G +P+ N+ L+ + N LG+ DLE
Sbjct: 268 GNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLE 327
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXXX 241
F++SL N ++LE + I N GG LP S+ NLS +L +G + G+IP
Sbjct: 328 FLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINL 387
Query: 242 XXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
+G + S+G L L+ L L N+ G IP+ +GN+T+L TL N EG
Sbjct: 388 QKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEG 447
Query: 302 SIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
+P+SLG C GTIP E++ + L + LD+S N L G LP + G L+N
Sbjct: 448 IVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQN 506
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
LG L + +NKLSG++P +LG+C+ +E L + GN F G+IP L G++ +DLS N+LS
Sbjct: 507 LGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLS 565
Query: 422 GRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
G IP+YF S N+ EG+VP+KG+F N++ +S+ GN++LCGGI L C
Sbjct: 566 GSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPC 624
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 198/485 (40%), Positives = 263/485 (54%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L VP +LGSLSKL L + NNL+G P+S GNL+SL+ L A NQ G+IP+ ++
Sbjct: 155 NHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVA 214
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +M N SG P ++YN+SSL L N G+L +D G+ LPNL L G
Sbjct: 215 RLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLG 274
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDL 180
NQFTG IP +++N S+L R I N SG +P S L L + N LGN L
Sbjct: 275 TNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGL 334
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
EF+ ++ N ++LE +++ N GG LP S+ NLST L +G N + G IP
Sbjct: 335 EFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVS 394
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
+G + S G L LQ + L N GEIPS GN+T L L N
Sbjct: 395 LQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFH 454
Query: 301 GSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IP SLG+C+ GTIP E++ + SL+ Y+DLS N L G P G L+
Sbjct: 455 GRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHFPEEVGKLE 513
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L L S NKLSG++P ++G C+ +E L M GN F G IP S L ++N+D S NNL
Sbjct: 514 LLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNL 572
Query: 421 SGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SGRIP+Y S N FEG VP GVF N++A+S+ GN N+CGG+ E+ L C
Sbjct: 573 SGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPC 632
Query: 481 SIKES 485
++ S
Sbjct: 633 IVQAS 637
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 191/488 (39%), Positives = 273/488 (55%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L G++P LG+L+ L L + N LSG IPSS G L+ L L+ A N G IP +
Sbjct: 135 FNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSF 194
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L+R+ + N LSG IP I+N+SSL++ + N+L G+LP++ LP+L+ +
Sbjct: 195 GQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYM 254
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDD 179
NQF G IPASI NASN+ TI N FSG VP + + LQR+ E +D
Sbjct: 255 YYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETND 314
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXX 239
+F+++L N S L+ +E+ FGG+LP+SV NLS+ L ++ +N++ G++P
Sbjct: 315 WKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLV 374
Query: 240 XXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRL 299
TG + S L+ L+RL + NK +G +P ++GNLT L + + N
Sbjct: 375 NLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAF 434
Query: 300 EGSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGIL 359
G+IPS+LG G IP E+ + +LS LD+S N L G +P G L
Sbjct: 435 GGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKL 494
Query: 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419
KN+ NKLSGE P+++G C L+ L + NF G+IP + + L+G+ LDLS NN
Sbjct: 495 KNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNN 554
Query: 420 LSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLST 479
LSG+IP S N F GEVP GVF+N+S I + GN ++CGGI ELHL T
Sbjct: 555 LSGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPT 614
Query: 480 CSIKESKQ 487
CS+K K+
Sbjct: 615 CSLKSRKK 622
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 192/484 (39%), Positives = 264/484 (54%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L VP +LGSL+KL L + NNL G++P S GNL+SL+ L N G++P+ L+
Sbjct: 148 NPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELA 207
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +M +G NK G P +IYNLS+L L + GSL D G LPN+ LN G
Sbjct: 208 RLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLG 267
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKV-PSLENLYKLQRVSFSLNHLGNGEKDDL 180
N G IP ++SN S L + I KN +G + P+ + LQ + S N LG+ DL
Sbjct: 268 ENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDL 327
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
EF+ SL N + L+++ + GG LP S+ N+ST L + N FG+IP
Sbjct: 328 EFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIG 387
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
TG + S+G L +L L L N+ GEIPS +GNLT L L N E
Sbjct: 388 LQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFE 447
Query: 301 GSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G +P SLGKC GTIP E++ + +L + L + N L+G LP++ G L+
Sbjct: 448 GIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-VNLSMEGNSLSGSLPNDIGSLQ 506
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
NL L + NK SG +P +LG+C+ +EQL + GN F G IP+ L G++ +DLS N+L
Sbjct: 507 NLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDL 565
Query: 421 SGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG IP+YF S N+F G+VP KG F NS+ + + GN NLCGGI +L L C
Sbjct: 566 SGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLKLKPC 625
Query: 481 SIKE 484
+E
Sbjct: 626 LAQE 629
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 190/481 (39%), Positives = 261/481 (54%)
Query: 2 NELVGKVPGKLG-SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N+L G +P ++G SL L L ++ N LSGEIPS+ GNL+SL+ + N+ G IP +L
Sbjct: 161 NQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSL 220
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L + ++ G N LSG IP SI+NLSSL N+L G +P++ TL LEV++
Sbjct: 221 GQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDM 280
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDD 179
G N+F G IPAS++NAS+L + I N FSG + S L L + N E+DD
Sbjct: 281 GTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDD 340
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXX 239
F+S L N S+L+ + + NN GG+LP S NLST L + N++ G+IP
Sbjct: 341 WGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLI 400
Query: 240 XXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRL 299
F G + S+G L+ L L N G IP ++GNLT L L N+
Sbjct: 401 GLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKF 460
Query: 300 EGSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGIL 359
G IP +L +G IP+E+ + +LSI +++SKN L G +P G L
Sbjct: 461 SGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHL 520
Query: 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419
KNL N+LSG+IPN+LG C L L + N G+IPS+ L+G++ LDLS NN
Sbjct: 521 KNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNN 580
Query: 420 LSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLST 479
LSG+IP S N F GEVP G F+ +S IS+ GN LCGGI +LHL
Sbjct: 581 LSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDLHLPR 640
Query: 480 C 480
C
Sbjct: 641 C 641
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 184/480 (38%), Positives = 255/480 (53%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L VP +LGSL KL L + N+L G+ P NL+SL L+ N G+IP+ ++
Sbjct: 148 NNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIA 207
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +M S+ N SG P + YNLSSL L N G+L D G LPN+ L+
Sbjct: 208 MLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLH 267
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKV-PSLENLYKLQRVSFSLNHLGNGEKDDL 180
N TG IP +++N S L I KN +G + P+ L L + + N LG+ DL
Sbjct: 268 GNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDL 327
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
F+ +L N S L + +S N GG LP S+ N+ST L + N ++G+IP
Sbjct: 328 AFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIG 387
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
TG + S+G+L L L L N+F GEIPS +GNLT L L N E
Sbjct: 388 LQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFE 447
Query: 301 GSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G +P SLG C GTIP E++ + +L ++L++ N L+G LP++ G L+
Sbjct: 448 GIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL-VHLNMESNSLSGSLPNDIGRLQ 506
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
NL L + N LSG +P +LG C+ +E + + N F G IP L G++N+DLS NNL
Sbjct: 507 NLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNVDLSNNNL 565
Query: 421 SGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
SG I +YFE S N+FEG VP +G+F N++ +S+ GN NLCG I EL L C
Sbjct: 566 SGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIKELKLKPC 625
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 2.8e-65, P = 2.8e-65
Identities = 172/487 (35%), Positives = 244/487 (50%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N LVG + ++G L L L +H NN +GE P S NL +L L+ N G++P L
Sbjct: 322 NHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG 381
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +R++ N L+G IP SI N + L LLD NQ+ G +P GF NL ++ G
Sbjct: 382 LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR--GFGRMNLTFISIG 439
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKV-PSLENLYKLQRVSFSLNHLGNGEKDDL 180
N FTG IP I N SNL L++ N +G + P + L KL+ + S N L G
Sbjct: 440 RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSL-TGP---- 494
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
+ N L ++ + N F G +P + NL T L+ + +N L G IP
Sbjct: 495 -IPREIGNLKDLNILYLHSNGFTGRIPREMSNL-TLLQGLRMYSNDLEGPIPEEMFDMKL 552
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
+F+G+I L+ L L L+GNKF G IP+S+ +L+LL T N L
Sbjct: 553 LSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLT 612
Query: 301 GSIPSSL-GKCKXXXXXXXXXXXX-TGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI 358
G+IP L K TGTIP E +G + +DLS N +G +P +
Sbjct: 613 GTIPGELLASLKNMQLYLNFSNNLLTGTIPKE-LGKLEMVQEIDLSNNLFSGSIPRSLQA 671
Query: 359 LKNLGVLDVSENKLSGEIPNSLGSCV-RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417
KN+ LD S+N LSG IP+ + + + L ++ N F G IP SF ++ + +LDLS
Sbjct: 672 CKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSS 731
Query: 418 NNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHL 477
NNL+G IP+ +SN+ +G VP GVF N +A L GN +LCG S+ L
Sbjct: 732 NNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG--SKKPL 789
Query: 478 STCSIKE 484
C+IK+
Sbjct: 790 KPCTIKQ 796
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 1.9e-61, P = 1.9e-61
Identities = 163/472 (34%), Positives = 228/472 (48%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNN-LSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N L G +P +LG LS L + + N +SG+IPS G+ S+L L A G +P +L
Sbjct: 187 NLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSL 246
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+LK++ ++ +SGEIP + N S L L N L GS+P +IG L LE L
Sbjct: 247 GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIG-QLTKLEQLFL 305
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL 180
N G IP I N SNL + + N SG +PS + R+SF + + K
Sbjct: 306 WQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPS-----SIGRLSFLEEFMISDNKFSG 360
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
+++ N S L +++ N G++P +G L T+L F +NQL G+IP
Sbjct: 361 SIPTTISNCSSLVQLQLDKNQISGLIPSELGTL-TKLTLFFAWSNQLEGSIPPGLADCTD 419
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
TG I + L+ L +L L N G IP +GN + L L NR+
Sbjct: 420 LQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRIT 479
Query: 301 GSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IPS +G K G +P E+ S L + +DLS N L G LP+ L
Sbjct: 480 GEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLEGSLPNPVSSLS 538
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L VLDVS N+ SG+IP SLG V L +L+++ N F G+IP+S G+Q LDL N L
Sbjct: 539 GLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNEL 598
Query: 421 SGRIPKYF-EXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471
SG IP + SSN G++P K N +I LD + N+ G
Sbjct: 599 SGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSI-LDLSHNMLEG 649
|
|
| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 2.3e-61, P = 2.3e-61
Identities = 165/487 (33%), Positives = 235/487 (48%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N+ G +P +G+L+ L TLA++ N+L G IPS GN+ SL+ L NQ G IP+ L
Sbjct: 263 NKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELG 322
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
+L ++ I F N LSGEIP + +S L LL N+L G +P+++ L NL L+
Sbjct: 323 KLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-KLRNLAKLDLS 381
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYK-LQRVSFSLNHLGNGEKDDL 180
N TGPIP N +++ +L + N SG +P LY L V FS N L
Sbjct: 382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSG------ 435
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXX 240
+ + S L ++ + N G +P V + L+ VGN +L G P+
Sbjct: 436 KIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGN-RLTGQFPTELCKLVN 494
Query: 241 XXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
+F+G + IG QKLQRL L N+F +P+ + L+ L T + N L
Sbjct: 495 LSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLT 554
Query: 301 GSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
G IPS + CK G++P E+ L L I L LS+N+ +G +P G L
Sbjct: 555 GPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSGNIPFTIGNLT 613
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF--FQGNIPSSFSSLRGIQNLDLSRN 418
+L L + N SG IP LG L Q+ MN ++ F G IP +L + L L+ N
Sbjct: 614 HLTELQMGGNLFSGSIPPQLGLLSSL-QIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNN 672
Query: 419 NLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLS 478
+LSG IP FE S N+ G++P +F N + S GN LCGG HL
Sbjct: 673 HLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----HLR 728
Query: 479 TCSIKES 485
+C S
Sbjct: 729 SCDPSHS 735
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 488 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-86 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-60 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-59 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-48 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-21 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 284 bits (727), Expect = 4e-86
Identities = 192/483 (39%), Positives = 269/483 (55%), Gaps = 17/483 (3%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L G++P +GS S L+ L + N L G+IP+S NL+SLEFL+ A NQ VGQIP L
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
++K ++ I G N LSGEIP+ I L+SL+ LD N L G +PS +G L NL+ L
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLY 268
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVS----FSLNHLGNGEK 177
N+ +GPIP SI + L+ L + N SG++P L + +LQ + FS N G
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL--VIQLQNLEILHLFSNNFTG---- 322
Query: 178 DDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGN 237
+ +L + RL+++++ N F G +P+++G L + N L G IP GL +
Sbjct: 323 ---KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCS 378
Query: 238 LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297
NL L L N G I S+G + L+R+RL+ N F GE+PS L L++ L N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438
Query: 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357
L+G I S +L +L L+ N G +P + G L LDLS+NQ +G +P G
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLE-NLDLSRNQFSGAVPRKLG 496
Query: 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417
L L L +SENKLSGEIP+ L SC +L L ++ N G IP+SFS + + LDLS+
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556
Query: 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHL 477
N LSG IPK N L +N+S NH G +P G F +A ++ GN +LCGG + L
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGL 616
Query: 478 STC 480
C
Sbjct: 617 PPC 619
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 3e-60
Identities = 170/478 (35%), Positives = 239/478 (50%), Gaps = 32/478 (6%)
Query: 3 ELVGK-VPGKLGS----LSKLRTLAVHFNNLSGEIPSS-FGNLSSLEFLSAAVNQFVGQI 56
+L GK + GK+ S L ++T+ + N LSG IP F SSL +L+ + N F G I
Sbjct: 75 DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI 134
Query: 57 PETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLE 116
P + + ++ N LSGEIP I + SSL +LD N L G +P+ + L +LE
Sbjct: 135 PR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLE 191
Query: 117 VLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176
L +NQ G IP + +L + + N SG++P Y++ ++ SLNHL
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-----YEIGGLT-SLNHL---- 241
Query: 177 KDDL-------EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFG 229
DL SSL N L+ + + N G +P S+ +L +L + +N L G
Sbjct: 242 --DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG 298
Query: 230 NIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLL 289
IP + L NLE+L L N FTG+I ++ L +LQ L+L NKF GEIP ++G L
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358
Query: 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L N L G IP L NL L L +N+L G IP + SL + L N +
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR-RVRLQDNSFS 417
Query: 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409
G LPS F L + LD+S N L G I + L+ L + N F G +P SF S R
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR- 476
Query: 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDN 467
++NLDLSRN SG +P+ + L L LS N GE+P + S +SLD + N
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHN 533
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 4e-59
Identities = 136/384 (35%), Positives = 202/384 (52%), Gaps = 9/384 (2%)
Query: 65 RMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQ 124
R+ SI +SG+I +I+ L + ++ NQL G +P DI T +L LN NN
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129
Query: 125 FTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVS 184
FTG IP + NL L + N SG++P+ + +V L+ GN + +
Sbjct: 130 FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV---LDLGGNVLVGKIP--N 182
Query: 185 SLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELL 244
SL N + LE + ++ N G +P +G + + LK +G N L G IP +G L +L L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNHL 241
Query: 245 DLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP 304
DL N TG I S+G+L+ LQ L L NK G IP S+ +L L +L N L G IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364
+ + +NL +L L +NN TG IP + L L + L L N+ +G +P N G NL V
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV-LQLWSNKFSGEIPKNLGKHNNLTV 360
Query: 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRI 424
LD+S N L+GEIP L S L +L++ N +G IP S + R ++ + L N+ SG +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420
Query: 425 PKYFENFFFLQNLNLSSNHFEGEV 448
P F + L++S+N+ +G +
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRI 444
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 9e-48
Identities = 115/284 (40%), Positives = 163/284 (57%), Gaps = 5/284 (1%)
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
++ + +S N G +P+ + S+ L+ + NN G+IP G ++ NLE LDL +N
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNML 152
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
+G I IG L+ L L GN +G+IP+S+ NLT L L+ N+L G IP LG+ K
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371
+L + L NNL+G IP E+ GL+SL+ +LDL N L GP+PS+ G LKNL L + +NK
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLN-HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431
LSG IP S+ S +L L ++ N G IP L+ ++ L L NN +G+IP +
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331
Query: 432 FFLQNLNLSSNHFEGEVPIK-GVFSNSSAISLDGNDNLCGGISE 474
LQ L L SN F GE+P G +N + + L N NL G I E
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN-NLTGEIPE 374
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 1e-21
Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query: 285 NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLS 344
N + + ++ G + G I S++ + + ++LSNN L+G IP ++ SS YL+LS
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 345 KNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF 404
N G +P G + NL LD+S N LSGEIPN +GS L+ L + GN G IP+S
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184
Query: 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451
++L ++ L L+ N L G+IP+ L+ + L N+ GE+P +
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP 351
L + L G IP+ + K ++L ++LS N++ G IP + ++SL + LDLS N NG
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV-LDLSYNSFNGS 481
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLG 381
+P + G L +L +L+++ N LSG +P +LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
L L N L G IP ++ L L ++LS N + G +P + G + +L VLD+S N +G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSS 403
IP SLG L L +NGN G +P++
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 248 DNQ-FTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSS 306
DNQ G I I L+ LQ + L GN G IP S+G++T L L N GSIP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 307 LGKCKNLILLDLSNNNLTGTIPTEVIGL 334
LG+ +L +L+L+ N+L+G +P + G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
L L L G +P++ L++L +++S N + G IP SLGS LE L ++ N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 401 PSSFSSLRGIQNLDLSRNNLSGRIP 425
P S L ++ L+L+ N+LSGR+P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 7e-12
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 197 ISINNFG--GMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR 254
+ ++N G G +P + L L+ + N + GNIP LG++ +LE+LDL N F G
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 255 ILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL 288
I S+G L L+ L L GN G +P+++G L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRI 424
L + L G IPN + L+ + ++GN +GNIP S S+ ++ LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 425 PKYFENFFFLQNLNLSSNHFEGEVP--IKGVFSNSSAISLDGNDNLCG 470
P+ L+ LNL+ N G VP + G + ++ + N LCG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 54 GQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLP 113
G IP +S+L+ ++SI N + G IP S+ +++SL +LD N GS+P +G L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLT 490
Query: 114 NLEVLNFGNNQFTGPIPASI 133
+L +LN N +G +PA++
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 224 NNQ-LFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS 282
+NQ L G IP+ + L +L+ ++L N G I S+G + L+ L L N F G IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 283 VGNLTLLFTLSFEGNRLEGSIPSSLG 308
+G LT L L+ GN L G +P++LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 4 LVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSEL 63
L G +P + L L+++ + N++ G IP S G+++SLE L + N F G IPE+L +L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 64 KRMRSIGFGANKLSGEIPFSI 84
+R + N LSG +P ++
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 277 GEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSS 336
G IP+ + L L +++ GN + G+IP SLG +L +LDLS N+ G+IP + L+S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 337 LSIYLDLSKNQLNGPLPSNFG 357
L I L+L+ N L+G +P+ G
Sbjct: 492 LRI-LNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISN 135
L G IP I L L ++ N ++G++P +G ++ +LEVL+ N F G IP S+
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQ 488
Query: 136 ASNLMRLTIQKNGFSGKVPSLENLYKLQRVSF 167
++L L + N SG+VP+ L R SF
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 71/248 (28%), Positives = 101/248 (40%), Gaps = 37/248 (14%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
L NL L+ NN T P SNL L + N L NL L+ + S N
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI 231
L DL + S + L + N++ ++
Sbjct: 175 L-----SDLPKLLSN---------------------------LSNLNNLDLSGNKIS-DL 201
Query: 232 PSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291
P + L LE LDL +N +L S+ +L+ L L L NK ++P S+GNL+ L T
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259
Query: 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP 351
L N++ S SSLG NL LDLS N+L+ +P + L L + L+L
Sbjct: 260 LDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317
Query: 352 LPSNFGIL 359
L N +L
Sbjct: 318 LKLNSILL 325
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 3e-06
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 11/235 (4%)
Query: 230 NIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL- 288
+ L NL+ L LDL N+ I + +L L L L N +IP +G L
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141
Query: 289 LFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQL 348
L L N++E S+PS L NL LDLS N+L+ +P + LS+L+ LDLS N++
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN-LDLSGNKI 198
Query: 349 NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR 408
+ LP +L L LD+S N + E+ +SL + L L ++ N + ++P S +L
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255
Query: 409 GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLD 463
++ LDLS N +S + L+ L+LS N +P+ + + L+
Sbjct: 256 NLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 98 NQ-LQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-S 155
NQ L+G +P+DI L +L+ +N N G IP S+ + ++L L + N F+G +P S
Sbjct: 427 NQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 156 LENLYKLQRVSFSLNHL 172
L L L+ ++ + N L
Sbjct: 486 LGQLTSLRILNLNGNSL 502
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 64/188 (34%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSL 337
+ ++ NL L +L NRL +I S L + NL LDL NNN+T P + S+L
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142
Query: 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397
LDLS N++ LPS L NL LD+S N LS ++P L + L L ++GN
Sbjct: 143 K-ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199
Query: 398 GNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNS 457
++P L ++ LDLS N++ + N L L LS+N E G SN
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257
Query: 458 SAISLDGN 465
+ L N
Sbjct: 258 ETLDLSNN 265
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 142 LTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN 200
L + G G +P+ + L LQ ++ S N + SL + + LE++++S N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------NIPPSLGSITSLEVLDLSYN 476
Query: 201 NFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236
+F G +PES+G L T L+ + N L G +P+ LG
Sbjct: 477 SFNGSIPESLGQL-TSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N + G +P LGS++ L L + +N+ +G IP S G L+SL L+ N G++P L
Sbjct: 452 NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQL 348
+L NRL + NL +LDLS NNLT P GL SL LDLS N L
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR-SLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.78 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.76 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.71 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.66 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.26 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.23 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.2 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.19 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.18 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.14 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.12 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.11 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.07 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.07 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.06 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.0 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 99.0 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.96 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.95 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.91 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.69 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.54 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.54 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.52 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.5 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.45 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.41 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.27 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.21 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.08 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.02 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.98 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.96 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.94 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.91 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.85 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.84 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.84 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.8 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.71 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.23 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.23 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.02 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.95 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.28 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.49 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.21 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.39 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.34 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.91 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.19 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.45 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.35 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.35 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.28 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.28 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.2 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 82.97 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=429.46 Aligned_cols=470 Identities=40% Similarity=0.651 Sum_probs=339.5
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 44455555555555666666665555555555555556666666666665555555555556666666666665555555
Q ss_pred hhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-ccccc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLY 160 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~ 160 (488)
..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+....|..+..+++|++|++++|.+.+..+. +..++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 5555666666666666655545554444 455666666666655555555555566666666666655544333 45566
Q ss_pred ccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCC
Q 041473 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 240 (488)
+|+.+++++|.+.. .....+..+++|+.++++.+.+.+..+..+... ++|+.+++++|.+....|.++..+++
T Consensus 309 ~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 309 NLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred CCcEEECCCCccCC------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCC
Confidence 66666666555443 222334556667777777776666666655555 46777777777776666666666777
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++.|+.+++++|.+.+..+..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 77777777777666666777778888888888887777777777888888888888888877777777788888888888
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+.+.+|..+ ....+ ++|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.++...
T Consensus 462 n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred ceeeeecCccc-ccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 88876676654 33445 88999999998888888999999999999999999889999999999999999999999888
Q ss_pred cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCccccccccccCcc
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~~~~l~~~~c 480 (488)
|..|..+++|+.|++++|++++.+|..+.++++|+.+++++|++.+.+|..+.+..+....+.|||..|++-..-..+.|
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c 619 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999998888888888899999999987655455666
Q ss_pred h
Q 041473 481 S 481 (488)
Q Consensus 481 ~ 481 (488)
.
T Consensus 620 ~ 620 (968)
T PLN00113 620 K 620 (968)
T ss_pred c
Confidence 4
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=422.61 Aligned_cols=460 Identities=33% Similarity=0.542 Sum_probs=222.8
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCcc-ccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSS-FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
|.+.+.++.+|..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|.+.+..
T Consensus 79 ~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~ 156 (968)
T PLN00113 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI 156 (968)
T ss_pred CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccC
Confidence 5566777777777777777777777776555543 34666677777766666544442 33455555555555555455
Q ss_pred chhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccc
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENL 159 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l 159 (488)
|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+....|..+..+++|++|++++|.+.+..+. +..+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 55555555555555555555444454443 455555555555555444455555555555555555554433332 4455
Q ss_pred cccceeeccccccCCCCCCch------------------hhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 160 YKLQRVSFSLNHLGNGEKDDL------------------EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~------------------~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
++|+.|++++|.+.......+ .....+..+++|+.++++.|.+.+.++..+... ++|+.|+
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~ 314 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILH 314 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEE
Confidence 555555555544432000000 111223333444444444444443333333333 2444444
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (488)
+.+|.+....|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 44444444444444444444444444444443334344444444444444444433333333333444444444444444
Q ss_pred CCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc
Q 041473 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381 (488)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 381 (488)
..|..+..+++|+.|++++|.+++..|..+..++.+ +++++++|.+.+..+..+..+++|+.|++++|.+.+..|..+
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~- 472 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF- 472 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-
Confidence 444444444555555555555544444444444444 445555554444444433344444444444444433333322
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-ccccCCccee
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAI 460 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l 460 (488)
..++|+.|++++|++....+..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..|. .+.+++|+.|
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 224444444444444444444444455555555555555544555555555555555555555544432 3334455555
Q ss_pred eecCCCC
Q 041473 461 SLDGNDN 467 (488)
Q Consensus 461 ~l~~n~~ 467 (488)
++++|..
T Consensus 553 ~Ls~N~l 559 (968)
T PLN00113 553 DLSQNQL 559 (968)
T ss_pred ECCCCcc
Confidence 5555543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=293.15 Aligned_cols=380 Identities=24% Similarity=0.246 Sum_probs=268.8
Q ss_pred cccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCC
Q 041473 44 FLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123 (488)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (488)
+|++++|++..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ .+...-...++.||.||++.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhc
Confidence 3555555555555555555555555555555555 45544444445555555555555 333333334555555555555
Q ss_pred cccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcc
Q 041473 124 QFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNF 202 (488)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 202 (488)
.+.......|..-.++++|++++|.++..... |..+. +|..+.++.|++
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln------------------------------sL~tlkLsrNri 209 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN------------------------------SLLTLKLSRNRI 209 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccc------------------------------hheeeecccCcc
Confidence 55433333344444555555555554433222 33333 445555555555
Q ss_pred cccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCcc
Q 041473 203 GGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS 282 (488)
Q Consensus 203 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 282 (488)
. .+|...++..++|+.|++.+|.+...--..|.++++|+.|.+..|.+.....+.|..+.++++|++..|++......+
T Consensus 210 t-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 210 T-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred c-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 4 344444442368888888888876544556788999999999999888777888888999999999999988777788
Q ss_pred ccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCc
Q 041473 283 VGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362 (488)
Q Consensus 283 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L 362 (488)
+.+++.|+.|++++|.+..+-++++..+++|++|+++.|.++...+..+..+..+ +.|+++.|++...-...|..+++|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhh
Confidence 8899999999999999988888888888999999999999884455555555555 889999999887777788889999
Q ss_pred cEEEccCCcccCCC---ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 363 GVLDVSENKLSGEI---PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 363 ~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
++|||++|.+...+ ...|.++++|++|.+.||++..+...+|.+++.|+.|+|.+|.+.++.+++|..+ .|++|-+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 99999999876433 4567889999999999999988888899999999999999999998899999888 8999888
Q ss_pred cCcccccccCCccccCCcc
Q 041473 440 SSNHFEGEVPIKGVFSNSS 458 (488)
Q Consensus 440 ~~n~~~~~~~~~~~~~~L~ 458 (488)
..-.+.|+|.-.|..+=|.
T Consensus 447 nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 447 NSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred cccceEEeccHHHHHHHHH
Confidence 8878888777666554443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=290.01 Aligned_cols=395 Identities=21% Similarity=0.218 Sum_probs=307.0
Q ss_pred ccccccccccccccchhhcCC--CCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEc
Q 041473 43 EFLSAAVNQFVGQIPETLSEL--KRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120 (488)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 120 (488)
+.|+.++..+.......+..+ ..-+.|++++|.+....+..|.++++|+.+++..|.++ .+|.... ...+|+.|++
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEee
Confidence 345555555543222222222 22445777777777666666777777777777777777 7776554 4556777777
Q ss_pred CCCcccccCCccccCCCCCceeecccCCCccCCC-CcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCC
Q 041473 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISI 199 (488)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 199 (488)
.+|.|.....+.+..++.|+.+|++.|.+..... .+..-.++++|++++|.++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~------------------------- 187 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT------------------------- 187 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-------------------------
Confidence 7777765556666677777777777776654432 25555566666666655543
Q ss_pred CcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCC
Q 041473 200 NNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI 279 (488)
Q Consensus 200 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 279 (488)
.-...+..+ .+|..|.+++|+++...+..|.++++|+.|++..|.+.....-.|+++++|+.|.+..|.+....
T Consensus 188 -----l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 188 -----LETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred -----ccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 323333444 48999999999999888888999999999999999987555667899999999999999999888
Q ss_pred CccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCC
Q 041473 280 PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGIL 359 (488)
Q Consensus 280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l 359 (488)
+..|..+.++++|++..|+++....+++.+++.|+.|+++.|.+...-+..-.....+ ++|++++|++....++.|..+
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-KELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc-eeEeccccccccCChhHHHHH
Confidence 8899999999999999999998888999999999999999999884444444444444 999999999998889999999
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCccccc---cCcccccCCCCCCEEeccCcccCCccchhhhccccCce
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG---NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQN 436 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 436 (488)
..|++|.|++|.+......+|..+++|++|++++|.+.- ...++|.++++|++|++.+|++.++...+|.+++.|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 999999999999985556778899999999999998763 45678999999999999999999888899999999999
Q ss_pred eeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 437 LNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 437 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
||+.+|.+-..-|..=....|++|.+..-...|+|
T Consensus 421 LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred ecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 99999999754443222349999999988888877
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=275.37 Aligned_cols=435 Identities=28% Similarity=0.405 Sum_probs=264.2
Q ss_pred cccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCC
Q 041473 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSL 90 (488)
Q Consensus 11 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 90 (488)
.+.++..+.++++++|.+. ..|.+.+.+..++.+++++|++. .+|..++.+.+|+.++.++|.+. .++..++.+-.+
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 3445555556666555555 45555555555666666665554 44555555555666666655555 455555555555
Q ss_pred cEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeecccc
Q 041473 91 SLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLN 170 (488)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 170 (488)
..++..+|.+. .+|..++ .+.++..+++.+|++. ..|+..-++..|++++...|-+...++.++.+.+|.-+++..|
T Consensus 140 ~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHH-HHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 55555555555 5555554 3455555555555555 2232222355555555555555555555555555555555555
Q ss_pred ccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCc
Q 041473 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQ 250 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 250 (488)
.+... ..+..+..|..+.+..|.+. +++....+..+++..|+++++.+. ..|..+.-+.+|++||+++|.
T Consensus 217 ki~~l--------Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 217 KIRFL--------PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred ccccC--------CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCc
Confidence 54322 22333344444444444332 344444333345555555555554 344445555555555555555
Q ss_pred CCCCccccccCCCCccEEEcccccccCCC--------------------------------------Cc---cccCCccc
Q 041473 251 FTGRILGSIGDLQKLQRLRLKGNKFLGEI--------------------------------------PS---SVGNLTLL 289 (488)
Q Consensus 251 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------------------------~~---~~~~~~~L 289 (488)
+.+ .+..++++ .|+.|.+.||++...- +. .....-+.
T Consensus 287 is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 287 ISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 542 33344444 5555555555442100 00 00112233
Q ss_pred cEEecCCCccCCCCCccccCC---CCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEE
Q 041473 290 FTLSFEGNRLEGSIPSSLGKC---KNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 366 (488)
+.|++++-.++ ..|+.+..- .-.+.++++.|++. ++|..+.....+.+.+.+++|.+. .+|..+..+++|..|+
T Consensus 365 kiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 365 KILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeee
Confidence 34444444443 223222111 12455666666665 666666655555555666666665 6667778899999999
Q ss_pred ccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 367 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+++|.+. .+|..+..+..|+.|+++.|++. ..|.....+..++.+-.++|++....+..+.++.+|..||+.+|.+..
T Consensus 442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred cccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence 9999988 88988888999999999999887 688888888889999999999998888889999999999999999998
Q ss_pred ccCCccccCCcceeeecCCCCc
Q 041473 447 EVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 447 ~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
..|..+.+++|+.|++.|||.-
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhhccccceeEEEecCCccC
Confidence 8889999999999999999975
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-35 Score=259.65 Aligned_cols=443 Identities=30% Similarity=0.421 Sum_probs=365.8
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
.++.+++++|.+. .+...+.++..|..+++++|... ..|.+++.+..+..++.++|.++ .+|..+..+.+++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4678889999888 55667788999999999999987 56777899999999999999998 899999999999999999
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCC
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 176 (488)
.|++. ++++.++ .+..++.++..+|+++ ..|+.+..+.++..+++.+|++....+....++.|+.++...|.++
T Consensus 123 ~n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 123 SNELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh---
Confidence 99998 9999998 6889999999999998 7899999999999999999999988888777999999999988887
Q ss_pred CCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc
Q 041473 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256 (488)
Q Consensus 177 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 256 (488)
.....++.+.+|+.+++..|.+. ..| .+... ..|++++++.+.+.-.......+++++..||+.+|++.+ .|
T Consensus 197 ----tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~P 268 (565)
T KOG0472|consen 197 ----TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VP 268 (565)
T ss_pred ----cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-Cc
Confidence 45566778889999999999876 334 33333 479999999999874444555689999999999999984 56
Q ss_pred ccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCC----------------------------------
Q 041473 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS---------------------------------- 302 (488)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------------------- 302 (488)
..+..+.+|.+|++++|.++ ..|..++++ .|+.|.+.+|++..+
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 66777899999999999998 677788888 899998888876410
Q ss_pred ----CC---ccccCCCCCcEEEccCCcCccccchhhhcccC--ceeEEEccCCcccccCCccccCCCCc-cEEEccCCcc
Q 041473 303 ----IP---SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSS--LSIYLDLSKNQLNGPLPSNFGILKNL-GVLDVSENKL 372 (488)
Q Consensus 303 ----~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--l~~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~n~l 372 (488)
.+ .......+.+.|++++-+++ .+|..++.... ....++++.|++. .+|..+..+..+ +.+.+++|.+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 00 01111346788888888888 77777665443 3468899999998 777776665554 4566666766
Q ss_pred cCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-c
Q 041473 373 SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-K 451 (488)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 451 (488)
. -.|..++.+++|+.|++++|.+. ..|..+..+..|+.|+++.|+|. .+|+++.....++.+-.++|.+....+. .
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 6 78888999999999999999988 67888888889999999999998 7898888888889999989998755444 6
Q ss_pred cccCCcceeeecCCCCc--------cccccccccCcchhh
Q 041473 452 GVFSNSSAISLDGNDNL--------CGGISELHLSTCSIK 483 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~--------c~~~~~l~~~~c~~~ 483 (488)
..+.+|+.|++..|... |.++.+|+++|+++.
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 77899999999999876 889999999999865
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-33 Score=256.17 Aligned_cols=371 Identities=26% Similarity=0.383 Sum_probs=254.5
Q ss_pred CCccCcEEeccCCCCCC-CcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 14 SLSKLRTLAVHFNNLSG-EIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
.+|.+|-.|+++|.+++ .+|.....+++++.|-+...++. .+|+.++.+..|+.|.+++|++. .+-..+..++.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 34455555555555552 44444444555555554444443 33444444445555555554444 33334444444444
Q ss_pred EecccCCcC-CCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccc
Q 041473 93 LDFPVNQLQ-GSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171 (488)
Q Consensus 93 L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 171 (488)
+.+..|.+. .-+|..++ .+..|..|++++|++. ..|..+....++-+|++++|.+.
T Consensus 83 v~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--------------------- 139 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--------------------- 139 (1255)
T ss_pred HhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc---------------------
Confidence 444444332 13344444 3444444444444444 33443433334444444433332
Q ss_pred cCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcC
Q 041473 172 LGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 251 (488)
.+|..+......|-.|++++|++. .+|..+..+..|++|.+++|.+
T Consensus 140 ---------------------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 140 ---------------------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ---------------------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 233332222246667777777765 5566688888899999999887
Q ss_pred CCCccccccCCCCccEEEccccccc-CCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchh
Q 041473 252 TGRILGSIGDLQKLQRLRLKGNKFL-GEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330 (488)
Q Consensus 252 ~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 330 (488)
...-..-+..+.+|+.|++++..-+ ..+|..+..+.+|..++++.|.+. ..|..+-.+++|+.|++++|+++ .+...
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~ 263 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT 263 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence 6555555667778888888875432 357778888999999999999988 88888889999999999999998 77767
Q ss_pred hhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCC
Q 041473 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409 (488)
Q Consensus 331 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 409 (488)
...+..+ .+|+++.|+++ .+|.++..+++|+.|...+|.++ .-+|..+..+..|+.+..++|.+. ..|+.+..|++
T Consensus 264 ~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 264 EGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred HHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 7777777 78999999998 88999999999999999999876 456888999999999999999887 88999999999
Q ss_pred CCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 410 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
|+.|.|+.|++. .+|+++.-++.|+.||++.|+.....|
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999998 899999999999999999998775544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-33 Score=266.17 Aligned_cols=434 Identities=26% Similarity=0.337 Sum_probs=274.6
Q ss_pred cccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhh
Q 041473 5 VGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSI 84 (488)
Q Consensus 5 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 84 (488)
....-++..+.-+|++|++++|.+. .+|..+..+++|+.|+++.|.|. ..|....++.+|+++.|.+|.+. ..|..+
T Consensus 34 l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 34 LSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred ccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH
Confidence 3333334444445888999888777 77888888888999999988886 45577888889999999988887 788888
Q ss_pred hccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCC-------------------cccccCCccccCCCCCceeecc
Q 041473 85 YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN-------------------QFTGPIPASISNASNLMRLTIQ 145 (488)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~l~~L~~L~l~ 145 (488)
..+++|++|+++.|.+. .+|.-+. .+..++.+..++| .+...++..+..+.+ .++++
T Consensus 111 ~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred HhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 88899999999998887 7776555 4555555666555 222222222222222 24444
Q ss_pred cCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcccc
Q 041473 146 KNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNN 225 (488)
Q Consensus 146 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 225 (488)
+|... ..++..+.+|+.+....+.+..... .-++++.+..+.+...... ....+.++++++++.+
T Consensus 187 ~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~----------~g~~l~~L~a~~n~l~~~~---~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 187 YNEME--VLDLSNLANLEVLHCERNQLSELEI----------SGPSLTALYADHNPLTTLD---VHPVPLNLQYLDISHN 251 (1081)
T ss_pred cchhh--hhhhhhccchhhhhhhhcccceEEe----------cCcchheeeeccCcceeec---cccccccceeeecchh
Confidence 44333 2223334444444433333221110 1133444444444333111 1112246777777777
Q ss_pred ccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCc
Q 041473 226 QLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS 305 (488)
Q Consensus 226 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 305 (488)
++. .+|.|+..+.+|+.++..+|.+.. .+..+....+|+.|.+..|.+. ..|....+++.|++|++..|.+. ..|+
T Consensus 252 ~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 252 NLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccch
Confidence 766 344777777777777777776643 3333444566777777777666 44445566777777777777766 4444
Q ss_pred ccc-CCC-CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccC
Q 041473 306 SLG-KCK-NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSC 383 (488)
Q Consensus 306 ~~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 383 (488)
.+. ... +|..++.+.+++. ..|..-......++.|.+.+|.+++.....+..+.+|+.|+|++|++.......+.++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch
Confidence 322 222 2566666666655 4442222222233667788888876666667777888888888888873333557778
Q ss_pred CCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc-cCCccccCCcceeee
Q 041473 384 VRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE-VPIKGVFSNSSAISL 462 (488)
Q Consensus 384 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l 462 (488)
..|++|+++||.++ ..|..+..++.|++|...+|.+. ..| .+..+++|+.+|++.|.++.- +|...--++|+.|++
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeec
Confidence 88888888888887 56678888888888888888887 555 677888888888888888753 332222278888888
Q ss_pred cCCCCc
Q 041473 463 DGNDNL 468 (488)
Q Consensus 463 ~~n~~~ 468 (488)
+||+|.
T Consensus 484 SGN~~l 489 (1081)
T KOG0618|consen 484 SGNTRL 489 (1081)
T ss_pred cCCccc
Confidence 888874
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-32 Score=253.17 Aligned_cols=360 Identities=28% Similarity=0.392 Sum_probs=284.9
Q ss_pred CCCcc-ccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccc-c
Q 041473 1 FNELV-GKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS-G 78 (488)
Q Consensus 1 ~~~~~-~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~ 78 (488)
+|+|+ +..|.....+.+++-|.+..+.+. .+|..++.+.+|++|.+++|++. .+...++.++.||.+++++|+++ .
T Consensus 16 gNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 16 GNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccC
Confidence 58888 789999999999999999999998 88999999999999999999986 44566899999999999999997 3
Q ss_pred ccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCccc
Q 041473 79 EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLEN 158 (488)
Q Consensus 79 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (488)
-+|..+..+..|..|||++|++. +.|..+- ..+++-.|++++|+|..+....+.++..|-.|++++|.+...+|.+..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 57888899999999999999999 9999887 688999999999999965556777899999999999999999999999
Q ss_pred ccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccc-cccchhccC
Q 041473 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLF-GNIPSGLGN 237 (488)
Q Consensus 159 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~ 237 (488)
+..|++|++++|.+.. .-...+..++.|+++.+++ .+-+ ..+|..+..
T Consensus 172 L~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~-------------------------TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSN-------------------------TQRTLDNIPTSLDD 220 (1255)
T ss_pred HhhhhhhhcCCChhhH------HHHhcCccchhhhhhhccc-------------------------ccchhhcCCCchhh
Confidence 9999999999988653 2223333334444444443 3222 235666777
Q ss_pred CCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEE
Q 041473 238 LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLD 317 (488)
Q Consensus 238 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 317 (488)
+.+|..++++.|.+. ..|+.+..+++|+.|++++|.++ .+......-.+|++|+++.|+++ ..|.++..+++|+.|.
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 888888888888876 67778888888999999988887 33444555678888888888888 8888888888888888
Q ss_pred ccCCcCcc-ccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccc
Q 041473 318 LSNNNLTG-TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFF 396 (488)
Q Consensus 318 l~~~~~~~-~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 396 (488)
+.+|+++- -+|..++.+..+ +.+..++|.+. ..|+.++.+.+|+.|.|+.|.+- .+|+++.-++.|+.|++..|.-
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~L-evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQL-EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hccCcccccCCccchhhhhhh-HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 88887652 367677766666 56666777666 66777777777777777777776 6777777777777777777754
Q ss_pred cccCc
Q 041473 397 QGNIP 401 (488)
Q Consensus 397 ~~~~~ 401 (488)
....|
T Consensus 375 LVMPP 379 (1255)
T KOG0444|consen 375 LVMPP 379 (1255)
T ss_pred ccCCC
Confidence 43333
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-32 Score=263.22 Aligned_cols=435 Identities=28% Similarity=0.328 Sum_probs=336.4
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|+-.+..|..+..+++|+.|+++.|.+. ..|.+.+++.+|++++|.+|... ..|..+..+++|.+|+++.|... ..|
T Consensus 54 nn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P 130 (1081)
T KOG0618|consen 54 NNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP 130 (1081)
T ss_pred ccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc
Confidence 5667888899999999999999999888 78889999999999999999876 78889999999999999999887 566
Q ss_pred hhhhccCCCcEEecccC-------------------CcCCCCCcchhccCCCCc-EEEcCCCcccccCCccccCCCCCce
Q 041473 82 FSIYNLSSLSLLDFPVN-------------------QLQGSLPSDIGFTLPNLE-VLNFGNNQFTGPIPASISNASNLMR 141 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~ 141 (488)
..+..+..+..+..++| .+.+.++..+. .++ .|+++.|.+. ......+.+|+.
T Consensus 131 l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~----~l~~~ldLr~N~~~---~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 131 LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY----NLTHQLDLRYNEME---VLDLSNLANLEV 203 (1081)
T ss_pred hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh----hhheeeecccchhh---hhhhhhccchhh
Confidence 66666655555555555 33333333332 344 4899888775 334567888888
Q ss_pred eecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 142 LTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 142 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
+....|++... ...-++++.+..+.|.+... ..-.-..+++.++++.+.+. .+++|+... .+++.+.
T Consensus 204 l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~--------~~~p~p~nl~~~dis~n~l~-~lp~wi~~~-~nle~l~ 270 (1081)
T KOG0618|consen 204 LHCERNQLSEL---EISGPSLTALYADHNPLTTL--------DVHPVPLNLQYLDISHNNLS-NLPEWIGAC-ANLEALN 270 (1081)
T ss_pred hhhhhcccceE---EecCcchheeeeccCcceee--------ccccccccceeeecchhhhh-cchHHHHhc-ccceEec
Confidence 88887766432 12346778888887776521 11223468999999999887 456888887 5999999
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCcc-ccEEecCCCccC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL-LFTLSFEGNRLE 300 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 300 (488)
...|++. ..|..+....+|+.|.+..|.+.. .+.....+..|++|++..|.+....+..+..... ++.++.+.+.+.
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 9999985 567778888999999999998874 4555677899999999999988544444444444 778888877776
Q ss_pred CCCC-ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccc
Q 041473 301 GSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS 379 (488)
Q Consensus 301 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 379 (488)
..| ..=..++.|+.|++.+|.+++..-..+.+.+.+ +.|++++|++.......+.+++.|+.|+++||.++ .+|..
T Consensus 349 -~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 349 -TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred -ccccccchhhHHHHHHHHhcCcccccchhhhccccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 333 112235679999999999998777777777777 99999999999666678889999999999999999 88999
Q ss_pred cccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccc-cccCCccccCCcc
Q 041473 380 LGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE-GEVPIKGVFSNSS 458 (488)
Q Consensus 380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~ 458 (488)
+.+++.|+.|...+|++. ..| .+.+++.|+.+|++.|+++......-...++|++||++||... -....+..++++.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhh
Confidence 999999999999999998 677 7788999999999999998653323233489999999999753 2344456677777
Q ss_pred eeeecCCC
Q 041473 459 AISLDGND 466 (488)
Q Consensus 459 ~l~l~~n~ 466 (488)
..+++-++
T Consensus 504 ~~~i~~~~ 511 (1081)
T KOG0618|consen 504 QMDITLNN 511 (1081)
T ss_pred heecccCC
Confidence 77777663
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=224.48 Aligned_cols=344 Identities=19% Similarity=0.213 Sum_probs=193.4
Q ss_pred ccchhhcCCCCccEEEeecccc------ccccchhhhccC-CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccc
Q 041473 55 QIPETLSELKRMRSIGFGANKL------SGEIPFSIYNLS-SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127 (488)
Q Consensus 55 ~~~~~~~~l~~L~~L~l~~~~l------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (488)
..+.+|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ .+.+|+.|++.++++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 3445678888888888865432 223556666654 5888888888777 777766 3678888888888776
Q ss_pred cCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCc
Q 041473 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207 (488)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 207 (488)
..+..+..+++|+.++++++......+.+..+++|+.|++.+|.... .....+..+++|+.++++++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c------- 691 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRC------- 691 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCC-------
Confidence 56666777888888888876655555666777777777776654321 22233344444555555444
Q ss_pred hhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCc
Q 041473 208 ESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLT 287 (488)
Q Consensus 208 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 287 (488)
.....+|..+ .+++|+.|++++|......+. ...+|+.|+++++.+. .+|..+ .++
T Consensus 692 ------------------~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~ 747 (1153)
T PLN03210 692 ------------------ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLE 747 (1153)
T ss_pred ------------------CCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-ccc
Confidence 3222233222 344455555554432211111 1234555555555443 222222 344
Q ss_pred cccEEecCCCccC-------CCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCC
Q 041473 288 LLFTLSFEGNRLE-------GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360 (488)
Q Consensus 288 ~L~~L~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~ 360 (488)
+|++|.+.++... ...+.....+++|+.|++++|+....+|..+..++.+ +.|++++|.....+|... .++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-Ccc
Confidence 4554444432211 0011111223456666666665444556555555555 566666654332444433 456
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
+|++|++++|.....+|.. .++|++|++++|.+. ..|..+..+++|+.|++++|+-...+|..+..+++|+.++++
T Consensus 826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 6777777776544344432 356777777777666 456666667777777777765444555566666777777777
Q ss_pred Ccccc
Q 041473 441 SNHFE 445 (488)
Q Consensus 441 ~n~~~ 445 (488)
+|...
T Consensus 902 ~C~~L 906 (1153)
T PLN03210 902 DCGAL 906 (1153)
T ss_pred CCccc
Confidence 77533
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-27 Score=206.85 Aligned_cols=399 Identities=21% Similarity=0.189 Sum_probs=225.5
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeec-cccccccchhhhccCCCcEEec
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA-NKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l 95 (488)
.-..+.|..|.|+.+.+.+|+.+++|+.|+|++|.|..+.|++|.++++|..|.+.+ |.|+......|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456778888888877788888888888888888888888888888888888877777 7888555567788888888888
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceee--ccccccC
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVS--FSLNHLG 173 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~--l~~~~~~ 173 (488)
..|++. .++...+..++++..|.+.+|.+.......|..+..++.+.+..|++...+. |+++- +..+.+.
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn-------L~wla~~~a~~~ie 219 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN-------LPWLADDLAMNPIE 219 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc-------cchhhhHHhhchhh
Confidence 888887 8888877788888888888888874444477788888888887776432211 11110 0000000
Q ss_pred CCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcccccccccc-chhccCCCCCCEEEccCCcCC
Q 041473 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI-PSGLGNLVNLELLDLGDNQFT 252 (488)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~ 252 (488)
.. .+....-..+...++..+-...+......+.+-....|...... ...|..+++|++|++++|+++
T Consensus 220 ts------------garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 220 TS------------GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred cc------------cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00 00000000000001100000000000000100011112111111 223556666666666666666
Q ss_pred CCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccc-cchhh
Q 041473 253 GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGT-IPTEV 331 (488)
Q Consensus 253 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~ 331 (488)
.+...+|.+...+++|.+..|.+.......|.++..|+.|++++|+++...|.+|.....|.+|++-.|++.-. --+++
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHH
Confidence 66666666666666666666666555555566666666666666666666666666666666666655543200 00000
Q ss_pred h--------------cccCceeEEEccCCccc---ccCCc---------cccCCCCccE-EEccCCcccCCCccccccCC
Q 041473 332 I--------------GLSSLSIYLDLSKNQLN---GPLPS---------NFGILKNLGV-LDVSENKLSGEIPNSLGSCV 384 (488)
Q Consensus 332 ~--------------~~~~l~~~L~l~~~~~~---~~~~~---------~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~ 384 (488)
. ..+..++.+.++...+. ...|+ .-..++.+.+ ...++..++ .+|..+ ..
T Consensus 368 ~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~ 444 (498)
T KOG4237|consen 368 GEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PV 444 (498)
T ss_pred HHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--Cc
Confidence 0 01111123333333222 11111 1112233333 233333444 666555 34
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
.-+++++.+|.++.+..+ .+.+| .+++++|+++......|.++.+|..|-|+.|
T Consensus 445 d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 445 DVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 677888888888743333 44566 7888888887666667777778877777654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=217.81 Aligned_cols=305 Identities=22% Similarity=0.212 Sum_probs=166.4
Q ss_pred ccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecc
Q 041473 66 MRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQ 145 (488)
Q Consensus 66 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 145 (488)
||.|.+.++.+. .+|..+ .+.+|++|++.++.+. .++..+. .+++|+.|+++++......| .+..+++|+.|++.
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 555555555444 344443 2345555555555544 4444333 35555555555443222222 24445555555555
Q ss_pred cCCCccCC-CCcccccccceeecccccc-CCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcc
Q 041473 146 KNGFSGKV-PSLENLYKLQRVSFSLNHL-GNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVG 223 (488)
Q Consensus 146 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 223 (488)
+|...... ..+..+++|+.|++++|.. ...+ ....++.|+.++++++.....++.. ..+|++|++.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--------~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~ 733 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--------TGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLD 733 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccC--------CcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecC
Confidence 44332222 2244555555555554321 1111 0113445555555555332222221 2466777777
Q ss_pred ccccccccchhccCCCCCCEEEccCCcCCC-------CccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTG-------RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
++.+. .+|..+ .+++|++|.+.++.... ..+.....+++|+.|++++|.....+|..++++++|+.|++++
T Consensus 734 ~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 734 ETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 77665 334333 45667777666532211 1111122346778888887766656777777788888888877
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
|...+.+|... .+++|+.|++++|.....+|... ..+++|++++|.+. .+|.++..+++|++|++++|.-...+
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~----~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS----TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCccccccccc----cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 75444556554 56778888888875443444322 22367778877776 56667777778888888876444366
Q ss_pred ccccccCCCCCEEecCCcc
Q 041473 377 PNSLGSCVRLEQLVMNGNF 395 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~ 395 (488)
|..+..+++|+.+++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 6666677777777777774
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-23 Score=183.71 Aligned_cols=391 Identities=21% Similarity=0.210 Sum_probs=263.6
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccc-cccccccchhhcCCCCccEEEeeccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAV-NQFVGQIPETLSELKRMRSIGFGANKLSGE 79 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 79 (488)
.|.++.+.+.+|+.+++||+|||++|.|+.+-|++|.++++|-.|-+.+ |+|+....++|.++..|+.|.+.-|.+...
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 3889999999999999999999999999999999999999998887777 899988888999999999999999999988
Q ss_pred cchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccc
Q 041473 80 IPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENL 159 (488)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 159 (488)
....|..++++..|.+.+|.+. .++...+..+..++++.+..|.+.. .-+++++.... .-+.+. ++..
T Consensus 156 r~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~ie-----tsga 223 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPIE-----TSGA 223 (498)
T ss_pred hHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhchhh-----cccc
Confidence 8899999999999999999998 8887666678889999887765321 11122221110 001110 1111
Q ss_pred cccceeeccccccCCCCCCchhhhhhhccCCCccEE--ecC-CCcccccCchhhhhhhccccEEEccccccccccchhcc
Q 041473 160 YKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM--EIS-INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l--~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 236 (488)
.......+....+...+.. .+... ++.+ .+. .+.....-|...++..++|+++++++|.++.+.+.+|.
T Consensus 224 rc~~p~rl~~~Ri~q~~a~--kf~c~------~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDAR--KFLCS------LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred eecchHHHHHHHhcccchh--hhhhh------HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 1111111111111111000 00000 1111 111 11122223333333336888888888888888888888
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC-----CCCccc----
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG-----SIPSSL---- 307 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~---- 307 (488)
+...+++|.+..|++.......|.++..|+.|++.+|+++...+..|.....|.+|++-.|++.. +..+|+
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 88888888888888876677778888888888888888887778888888888888887666431 111111
Q ss_pred -------cCCCCCcEEEccCCcCc---cccch---------hhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 308 -------GKCKNLILLDLSNNNLT---GTIPT---------EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 308 -------~~~~~L~~L~l~~~~~~---~~~~~---------~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
.....++.+.+++..+. ...|+ ....++-+.++...++..+. .+|..+. ..-+.+++.
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~ 452 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLD 452 (498)
T ss_pred CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcc
Confidence 11123556666554332 11111 11222233334556666555 4554443 457889999
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+|.++ .+|.. .+.+| .+++++|++.......|.++++|.+|-|+.|
T Consensus 453 gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 453 GNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 99999 77766 57788 9999999999777889999999999998875
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=168.61 Aligned_cols=183 Identities=30% Similarity=0.308 Sum_probs=99.9
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
.|+.|++.+|.++. +|. .+++|++|++++|.+... +. ...+|+.|.+++|.+.. +|. ..++|++|+++
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC---CcccccccccccCcccc-ccc---cccccceEecC
Confidence 45555555555542 222 234566666666665532 11 12346666666666552 232 12456666776
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+. .+|.. .++|+.|++++|.+. .+|... ..+ +.|++++|.+.. +|.. .++|+.|++++|.++ .
T Consensus 351 ~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 351 DNQLA-SLPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred CCccC-CCCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-C
Confidence 66666 33332 245666666666665 444322 122 566666666652 3322 245666777777666 4
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhh
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 428 (488)
+|.. +.+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5532 235666667766666 455566666667777777776665555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=165.84 Aligned_cols=201 Identities=28% Similarity=0.321 Sum_probs=152.6
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
++|++|++.+|.+.. +|. ...+|+.|++++|.+... +. .+++|+.|++++|.+.. ++.. ..+|+.|++
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred cccceeeccCCchhh-hhh---chhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---ccccccccc
Confidence 467777777776653 333 235788999999988743 22 24789999999998874 3432 356888999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+. .+|. + .++|+.|++++|+++ .+|.. +..++.|++++|.+. .+|.. .++|+.|++++|.++
T Consensus 330 s~N~L~-~LP~-l--p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt- 395 (788)
T PRK15387 330 YNNQLT-SLPT-L--PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT- 395 (788)
T ss_pred ccCccc-cccc-c--ccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-
Confidence 999987 3453 2 257999999999998 56643 233378899999988 45543 357999999999998
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
.+|.. .++|+.|++++|++.. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 396 ~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 396 SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 56643 4689999999999984 4543 357889999999998 688899999999999999999997544
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-19 Score=169.01 Aligned_cols=251 Identities=22% Similarity=0.231 Sum_probs=151.9
Q ss_pred cccEEEccccccccc----cchhccCCCCCCEEEccCCcCCC------CccccccCCCCccEEEcccccccCCCCccccC
Q 041473 216 RLKRFTVGNNQLFGN----IPSGLGNLVNLELLDLGDNQFTG------RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN 285 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 285 (488)
.++++.+.++.++.. ++..+...+++++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 455666655554321 23334455556666666655441 11233445667777777776665433333333
Q ss_pred Cc---cccEEecCCCccCCC----CCccccCC-CCCcEEEccCCcCccc----cchhhhcccCceeEEEccCCccccc--
Q 041473 286 LT---LLFTLSFEGNRLEGS----IPSSLGKC-KNLILLDLSNNNLTGT----IPTEVIGLSSLSIYLDLSKNQLNGP-- 351 (488)
Q Consensus 286 ~~---~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~L~l~~~~~~~~-- 351 (488)
+. +|++|++++|.+.+. ....+..+ ++|+.|++++|.+++. ++..+.....+ ++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence 33 377777777766521 22234445 6777777777776632 22233333444 6777777776532
Q ss_pred --CCccccCCCCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccCccccc-----CCCCCCEEeccCccc
Q 041473 352 --LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIPSSFS-----SLRGIQNLDLSRNNL 420 (488)
Q Consensus 352 --~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~ 420 (488)
++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 223344556889999998887633 234566778899999999988753332222 247899999999988
Q ss_pred CC----ccchhhhccccCceeeccCcccccc----cCC-cccc-CCcceeeecCCCC
Q 041473 421 SG----RIPKYFENFFFLQNLNLSSNHFEGE----VPI-KGVF-SNSSAISLDGNDN 467 (488)
Q Consensus 421 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~-~~~~-~~L~~l~l~~n~~ 467 (488)
+. .+...+..+++|+++++++|++... ... .... ..++.++|.+|||
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 73 2445666778899999999998843 222 2223 6888999988875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=163.24 Aligned_cols=253 Identities=25% Similarity=0.384 Sum_probs=185.0
Q ss_pred CCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEE
Q 041473 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLR 269 (488)
Q Consensus 190 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 269 (488)
.....+.++...+. .+|..+ ++.++.|++++|.++. +|..+. .+|++|++++|.+... +..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEE
Confidence 45667777776655 334333 3579999999998884 454443 5899999999988743 33332 5799999
Q ss_pred cccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCccc
Q 041473 270 LKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349 (488)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~ 349 (488)
+++|.+. .+|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ..+++|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc
Confidence 9999887 455444 358999999999888 5666554 58999999999988 5665432 23378899999988
Q ss_pred ccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhh
Q 041473 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFE 429 (488)
Q Consensus 350 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 429 (488)
. +|..+ .++|+.|++++|.++ .+|..+ +++|+.|++++|.+. ..|..+. ++|+.|+|++|+++ .+|..+.
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred c-CCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH
Confidence 3 45433 368999999999998 577655 479999999999988 4555443 68999999999998 4565554
Q ss_pred ccccCceeeccCcccccccCC-c----cccCCcceeeecCCCCcccccccc
Q 041473 430 NFFFLQNLNLSSNHFEGEVPI-K----GVFSNSSAISLDGNDNLCGGISEL 475 (488)
Q Consensus 430 ~l~~L~~L~l~~n~~~~~~~~-~----~~~~~L~~l~l~~n~~~c~~~~~l 475 (488)
.+|+.|++++|.+. .+|. . ...+.+..+++.+||+....++.|
T Consensus 388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 37999999999987 4442 2 234778899999999887776655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-18 Score=158.65 Aligned_cols=210 Identities=26% Similarity=0.368 Sum_probs=131.0
Q ss_pred hccCCCCCCEEEccCCcCCCCccccccCCC---CccEEEcccccccCC----CCccccCC-ccccEEecCCCccCCC---
Q 041473 234 GLGNLVNLELLDLGDNQFTGRILGSIGDLQ---KLQRLRLKGNKFLGE----IPSSVGNL-TLLFTLSFEGNRLEGS--- 302 (488)
Q Consensus 234 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~---~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~--- 302 (488)
.+..+++|++|+++++.+....+..+..+. +|+.|++++|.+.+. ....+..+ ++|++|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 344566666666666665433333333333 377777776665421 11223344 6777777777766532
Q ss_pred -CCccccCCCCCcEEEccCCcCccc----cchhhhcccCceeEEEccCCccccc----CCccccCCCCccEEEccCCccc
Q 041473 303 -IPSSLGKCKNLILLDLSNNNLTGT----IPTEVIGLSSLSIYLDLSKNQLNGP----LPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 303 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
.+..+..+++|++|++++|.+.+. ++..+...+.+ ++|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 223445566777777777776632 22223333344 6777777766532 2334566789999999999887
Q ss_pred CCCccccc-----cCCCCCEEecCCcccccc----CcccccCCCCCCEEeccCcccCCc----cchhhhcc-ccCceeec
Q 041473 374 GEIPNSLG-----SCVRLEQLVMNGNFFQGN----IPSSFSSLRGIQNLDLSRNNLSGR----IPKYFENF-FFLQNLNL 439 (488)
Q Consensus 374 ~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l 439 (488)
+.....+. ..+.|++|++++|.+++. ....+..+++|+++++++|.++.. ....+... +.|+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 53332222 247999999999988732 234556678999999999999955 44444555 68999999
Q ss_pred cCccc
Q 041473 440 SSNHF 444 (488)
Q Consensus 440 ~~n~~ 444 (488)
.+|++
T Consensus 315 ~~~~~ 319 (319)
T cd00116 315 KDDSF 319 (319)
T ss_pred CCCCC
Confidence 98874
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-18 Score=135.87 Aligned_cols=176 Identities=28% Similarity=0.461 Sum_probs=129.0
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEc
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDV 367 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 367 (488)
..+.|.++.|.++ ..|..+..+.+|+.|++++|+++ .+|..+..++.+ +.+++.-|++. ..|..|+.+|.|++||+
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl-r~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL-RILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh-hheecchhhhh-cCccccCCCchhhhhhc
Confidence 3344444444444 44444445555555555555555 555555555555 55566556655 67788888888999999
Q ss_pred cCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 368 SENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 368 ~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
..|.+. ...|..|..+..|+.|++++|.+. ..|..++++++|+.|.+++|.+. .+|..++.+..|++|.+.||+++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 888775 467888888999999999999887 78888899999999999999988 788889999999999999999987
Q ss_pred ccCCcccc---CCcceeeecCCCCcc
Q 041473 447 EVPIKGVF---SNSSAISLDGNDNLC 469 (488)
Q Consensus 447 ~~~~~~~~---~~L~~l~l~~n~~~c 469 (488)
..|+.+.+ .+-+...+..|||.-
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 77766554 444567788888863
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=155.25 Aligned_cols=240 Identities=20% Similarity=0.344 Sum_probs=182.0
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
.+.+.|++.+..++. +|..+ .++++.|++++|.+.... ..+. .+|+.|++++|.+. .+|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP-~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLP-ENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCC-hhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 357889998888774 45444 357999999999988543 3332 58999999999887 445443 358999999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+. .+|..+. .+|+.|++++|++. .+|..+. ..+ ++|++++|.+. .+|..+. ++|+.|++++|.++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL-~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EEL-RYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT- 317 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCC-cEEECCCCccc-cCcccch--hhHHHHHhcCCccc-
Confidence 999988 5666654 58999999999998 6776553 244 89999999998 4554443 57999999999998
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcccc
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVF 454 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 454 (488)
.+|..+ .++|+.|++++|.++. .|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++. +|.. ..
T Consensus 318 ~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~-l~ 387 (754)
T PRK15370 318 ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPEN-LP 387 (754)
T ss_pred cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHh-HH
Confidence 566544 4799999999999985 554443 79999999999998 5666553 689999999999984 4532 34
Q ss_pred CCcceeeecCCCCcc------------ccccccccCcchhhh
Q 041473 455 SNSSAISLDGNDNLC------------GGISELHLSTCSIKE 484 (488)
Q Consensus 455 ~~L~~l~l~~n~~~c------------~~~~~l~~~~c~~~~ 484 (488)
..|+.|++++|.... ..+..|++.++++.+
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 579999999998652 334567788887653
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-17 Score=125.08 Aligned_cols=168 Identities=28% Similarity=0.404 Sum_probs=146.4
Q ss_pred ccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCC
Q 041473 307 LGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386 (488)
Q Consensus 307 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (488)
+..+.+++.|.+++|+++ .+|..+..+..+ +.+++++|++. ..|..++.+++|+.|++.-|.+. ..|..|..++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nl-evln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNL-EVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhh-hhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 345678899999999999 888888888888 89999999998 78889999999999999999998 999999999999
Q ss_pred CEEecCCccccc-cCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 387 EQLVMNGNFFQG-NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 387 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
+.|++..|.+.+ ..|+.|..+..|+-|++++|.+. .+|..++.+++|+.|.+++|++.....+.+.++.|++|.|.||
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 999999998864 67889999999999999999998 8888999999999999999999955557889999999999999
Q ss_pred CCcc--ccccccccCc
Q 041473 466 DNLC--GGISELHLST 479 (488)
Q Consensus 466 ~~~c--~~~~~l~~~~ 479 (488)
-..- +.+.-||+-+
T Consensus 184 rl~vlppel~~l~l~~ 199 (264)
T KOG0617|consen 184 RLTVLPPELANLDLVG 199 (264)
T ss_pred eeeecChhhhhhhhhh
Confidence 6442 3344444433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-13 Score=114.91 Aligned_cols=251 Identities=21% Similarity=0.294 Sum_probs=130.2
Q ss_pred hhhhhccCCCccEEecCCCcccccCchhhhhhh---ccccEEEcccccc---ccccch-------hccCCCCCCEEEccC
Q 041473 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLS---TRLKRFTVGNNQL---FGNIPS-------GLGNLVNLELLDLGD 248 (488)
Q Consensus 182 ~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~---~~~~~~-------~l~~l~~L~~L~L~~ 248 (488)
....+.....++.++++++.+......++.... +.|+..++++-.- ...+|. .+..++.|++|+|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 344555667777777777776655444433321 2444444443211 011121 223445555555555
Q ss_pred CcCCCCccc----cccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc
Q 041473 249 NQFTGRILG----SIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 249 ~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 324 (488)
|.+....+. .+.++..|++|.+.+|.+.......++. .|.++. ........+.|+.+...+|.+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccc
Confidence 555432222 2223444555555555433211111100 000000 0001122355666666666554
Q ss_pred cc----cchhhhcccCceeEEEccCCcccc----cCCccccCCCCccEEEccCCcccCC----CccccccCCCCCEEecC
Q 041473 325 GT----IPTEVIGLSSLSIYLDLSKNQLNG----PLPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 325 ~~----~~~~~~~~~~l~~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~ 392 (488)
+. +...+...+.+ +.+.++.|.+.. .....+..+++|++|||++|.++.. +...++.+++|++|+++
T Consensus 171 n~ga~~~A~~~~~~~~l-eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTL-EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhcccc-ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 11 12222233333 556666665431 1224567788888888888877632 33556677788888888
Q ss_pred CccccccCccccc-----CCCCCCEEeccCcccCCc----cchhhhccccCceeeccCccc
Q 041473 393 GNFFQGNIPSSFS-----SLRGIQNLDLSRNNLSGR----IPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 393 ~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~ 444 (488)
+|.+...+..+|. ..|+|+.|.+.+|.++.. +..++...+.|..|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8887765544332 357888888888887744 334445567888888888887
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-12 Score=108.78 Aligned_cols=226 Identities=26% Similarity=0.216 Sum_probs=138.4
Q ss_pred cchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC-ccCCCCCccccC
Q 041473 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN-RLEGSIPSSLGK 309 (488)
Q Consensus 231 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~ 309 (488)
.|..+..+.+|+.+.++.+.-..+.. .-..-|.|+++.+.+..+... +..+ -...+....-+.- -..|........
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~-~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDV-PSLL-PETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccccc-cccc-chhhhcCccCCCCCccCCceEEecch
Confidence 34445556677777777765432211 111226677777665543311 1100 0011111000000 011112222333
Q ss_pred CCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEE
Q 041473 310 CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389 (488)
Q Consensus 310 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (488)
...|+++++++|.++ .+.+++--.+.. +.|++++|.+..+ +.++.+++|+.||+++|.++ .+..+-..+-+.+.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 456889999999887 777777666666 8899999988733 23778899999999999888 555555567889999
Q ss_pred ecCCccccccCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccccCC----c-cccCCcceeeec
Q 041473 390 VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVPI----K-GVFSNSSAISLD 463 (488)
Q Consensus 390 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~----~-~~~~~L~~l~l~ 463 (488)
.+++|.+.+ ...+..+=+|..||+++|++..... +.++++|.|+.+.+.+|++.....- . .+-.+-.++.+.
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD 435 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLD 435 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecC
Confidence 999998762 2345666788999999998875533 6778899999999999998754331 1 112344456665
Q ss_pred CCC
Q 041473 464 GND 466 (488)
Q Consensus 464 ~n~ 466 (488)
+-+
T Consensus 436 ~~~ 438 (490)
T KOG1259|consen 436 NEP 438 (490)
T ss_pred CCC
Confidence 543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-12 Score=115.37 Aligned_cols=215 Identities=20% Similarity=0.182 Sum_probs=109.3
Q ss_pred cCCccCcEEeccCCCCCCCcC-ccccCCccccccccccccccc--ccchhhcCCCCccEEEeeccccccccchh-hhccC
Q 041473 13 GSLSKLRTLAVHFNNLSGEIP-SSFGNLSSLEFLSAAVNQFVG--QIPETLSELKRMRSIGFGANKLSGEIPFS-IYNLS 88 (488)
Q Consensus 13 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~l~ 88 (488)
+++++||...+.++.+..... .....|++++.|++++|-+.. ........+++|+.|+++.|.+..-.... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345666666666665552211 355566666666666665532 22233456666666666666654111111 11345
Q ss_pred CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCC--CCcccccccceee
Q 041473 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKV--PSLENLYKLQRVS 166 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 166 (488)
+|+.|.++.|.++..-...+...+|+|+.|.+..|............++.|++|++++|.+.... +..+.++.|+.+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 66666666666553222333345666666666665322122223334556666666666554433 2355555555555
Q ss_pred ccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccc-cchhccCCCCCCEEE
Q 041473 167 FSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGN-IPSGLGNLVNLELLD 245 (488)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 245 (488)
++.+.+.....-+...... ...+++|++|++..|.+.+. ....+..+++|+.|.
T Consensus 278 ls~tgi~si~~~d~~s~~k-------------------------t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDK-------------------------THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccCcchhcCCCccchhh-------------------------hcccccceeeecccCccccccccchhhccchhhhhh
Confidence 5555544332222222222 22335777777777766321 122345566777777
Q ss_pred ccCCcCC
Q 041473 246 LGDNQFT 252 (488)
Q Consensus 246 L~~~~~~ 252 (488)
+..+.+.
T Consensus 333 ~~~n~ln 339 (505)
T KOG3207|consen 333 ITLNYLN 339 (505)
T ss_pred ccccccc
Confidence 7776665
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=100.15 Aligned_cols=103 Identities=28% Similarity=0.329 Sum_probs=31.8
Q ss_pred eEEEccCCcccccCCcccc-CCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 339 IYLDLSKNQLNGPLPSNFG-ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
++|++.++.+.. +. .++ .+.+|++|++++|.++ .+. .+..+++|++|++++|++++..+.....+++|+.|++++
T Consensus 22 ~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 22 RELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 566777776652 22 233 3566677777777666 332 455566777777777776643322223566677777777
Q ss_pred cccCCc-cchhhhccccCceeeccCcccc
Q 041473 418 NNLSGR-IPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 418 n~~~~~-~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
|++... .-..+..+++|+.|++.|||+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 766543 2245566666777777777665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-12 Score=116.75 Aligned_cols=209 Identities=22% Similarity=0.238 Sum_probs=122.5
Q ss_pred cCCCCCCEEEccCCcCCCCcc-ccccCCCCccEEEcccccccCCCC--ccccCCccccEEecCCCccCCCCCcc-ccCCC
Q 041473 236 GNLVNLELLDLGDNQFTGRIL-GSIGDLQKLQRLRLKGNKFLGEIP--SSVGNLTLLFTLSFEGNRLEGSIPSS-LGKCK 311 (488)
Q Consensus 236 ~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 311 (488)
.++.+|+++.+.++....... .....+++++.|+++.|-+....+ .....+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888776653222 345667888888888886653222 23457788888888888765221111 11346
Q ss_pred CCcEEEccCCcCccc-cchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCc--cccccCCCCCE
Q 041473 312 NLILLDLSNNNLTGT-IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP--NSLGSCVRLEQ 388 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~ 388 (488)
.|+.|.+++|.++.. +......++++ ..|.+..|.....-.....-+..|+.|+|++|.+. ..+ .....++.|+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 677788888766522 22233344555 56677766422122233344556777777777665 333 23445677777
Q ss_pred EecCCccccccC-ccc-----ccCCCCCCEEeccCcccCCc-cchhhhccccCceeeccCccccc
Q 041473 389 LVMNGNFFQGNI-PSS-----FSSLRGIQNLDLSRNNLSGR-IPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 389 L~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
|+++.|++.++- +.+ ...+++|++|++..|++.+- --..+..+++|+.+.+.+|++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777777766421 222 23457777777777776422 22445566677777777777664
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-11 Score=122.98 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=102.1
Q ss_pred CCccCcEEeccCCCCCCCcCccccCCcccccccccccc--cccccchhhcCCCCccEEEeeccccccccchhhhccCCCc
Q 041473 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQ--FVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 91 (488)
.....|++.+.++.+. ..+.+. .++.|++|-+.++. +.....+.|..++.|++||+++|.--..+|..++++.+||
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3467788888888776 444443 45579998888886 5545555688899999999998766568999999999999
Q ss_pred EEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCC
Q 041473 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNG 148 (488)
Q Consensus 92 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (488)
+|+++++.+. .+|..+. .+..|.+|++..+......+.....+.+|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999998 9999888 78899999998776554556666668888888886554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-12 Score=110.65 Aligned_cols=185 Identities=19% Similarity=0.230 Sum_probs=104.0
Q ss_pred cccEEEccccccccccch----hccCCCCCCEEEccCCcCCCCcccc-------------ccCCCCccEEEcccccccCC
Q 041473 216 RLKRFTVGNNQLFGNIPS----GLGNLVNLELLDLGDNQFTGRILGS-------------IGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~ 278 (488)
+|+++++++|.+....+. .+..+..|++|.+.+|.+....... ...-+.|+.+...+|++.+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 666666666655433222 3456889999999999876432222 23345677777777765432
Q ss_pred CC----ccccCCccccEEecCCCccCCC----CCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc
Q 041473 279 IP----SSVGNLTLLFTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 279 ~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
.. ..|...+.|+.+.+..|.+... ...++..|++|+.|++.+|.++..-..
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--------------------- 231 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--------------------- 231 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------------------
Confidence 21 2344556677777766665422 123455566666666666655421111
Q ss_pred cCCccccCCCCccEEEccCCcccCCCccccc-----cCCCCCEEecCCccccccCc----ccccCCCCCCEEeccCcccC
Q 041473 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLG-----SCVRLEQLVMNGNFFQGNIP----SSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 351 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~ 421 (488)
.+...++.++.|+.|++++|.+......+|. ..++|+.+.+.+|.++.... .++...+.|..|+|++|++.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1122334445666666666666544433221 35677777777776664222 23334577777777777773
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-11 Score=96.71 Aligned_cols=128 Identities=27% Similarity=0.273 Sum_probs=51.7
Q ss_pred CCCCCcEEEccCCcCccccchhhh-cccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc-ccCCCC
Q 041473 309 KCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL-GSCVRL 386 (488)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L 386 (488)
++.++++|++.+|.+. .+. .+. .+..+ +.|++++|.+... +.+..++.|++|++++|.++ .+...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L-~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKL-EVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT---EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-ccc-chhhhhcCC-CEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 3445677777777766 332 232 23344 6778888877632 24667889999999999998 444444 468999
Q ss_pred CEEecCCccccccCc-ccccCCCCCCEEeccCcccCCcc---chhhhccccCceeeccCc
Q 041473 387 EQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRI---PKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 387 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l~~n 442 (488)
++|++++|++.+... ..+..+++|+.|++.+|++.... ...+..+|+|+.||-..-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 999999999975433 56678899999999999998552 245678899999875433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-11 Score=104.50 Aligned_cols=131 Identities=26% Similarity=0.340 Sum_probs=100.4
Q ss_pred hhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCC
Q 041473 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGI 410 (488)
Q Consensus 331 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 410 (488)
+.-+..+ +.+++++|.++ .+-++..-.|.++.|+++.|.+. .+. .++.+++|+.|++++|.++ ...++=..+-+.
T Consensus 280 ~dTWq~L-telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQEL-TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhh-hhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3334444 68899999887 44556666788999999999887 333 3667889999999999887 344555567788
Q ss_pred CEEeccCcccCCccchhhhccccCceeeccCccccc--ccCCccccCCcceeeecCCCCc
Q 041473 411 QNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG--EVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 411 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
++|.+++|.+... ..++.+-+|..||+++|++.. .....+.++.|+.+.+.+||..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8999999887632 467788899999999999875 3667888999999999999864
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-12 Score=118.21 Aligned_cols=170 Identities=31% Similarity=0.497 Sum_probs=94.8
Q ss_pred cEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccC
Q 041473 266 QRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345 (488)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~ 345 (488)
...+++.|++. ..|..+..|-.|+.+.++.|.+. .+|.++..+..|++++++.|++. .+|..+..++ + +.+.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-eeEEEec
Confidence 44455555554 44444445555555555555554 45555555555666666666555 5555444433 2 4555566
Q ss_pred CcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc
Q 041473 346 NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
|+++ .+|..++..+.|..||.+.|.+- .+|..+..+.+|+.|.++.|++. ..|+.+. .-.|..||++.|+++ .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecc
Confidence 6655 44445555556666666666665 55555556666666666666655 2333333 334666666666666 555
Q ss_pred hhhhccccCceeeccCcccc
Q 041473 426 KYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 426 ~~l~~l~~L~~L~l~~n~~~ 445 (488)
-.|..+..|++|-|.+|+++
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 56666666666666666665
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-10 Score=114.15 Aligned_cols=118 Identities=32% Similarity=0.574 Sum_probs=102.8
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+....|..+..+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999998999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred CcccccccCCcc--ccCCcceeeecCCCCccccccccccCcch
Q 041473 441 SNHFEGEVPIKG--VFSNSSAISLDGNDNLCGGISELHLSTCS 481 (488)
Q Consensus 441 ~n~~~~~~~~~~--~~~~L~~l~l~~n~~~c~~~~~l~~~~c~ 481 (488)
+|.+++.+|..- .+.++..+++.+|+..|+ .+. +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~-~p~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IPG--LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC-CCC--CCCCc
Confidence 999999888532 235667899999999997 343 35564
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=110.81 Aligned_cols=199 Identities=34% Similarity=0.501 Sum_probs=141.9
Q ss_pred EEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCc-cccEEecCCCccCCCCCccccCCCCCcEEEccCC
Q 041473 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLT-LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN 321 (488)
Q Consensus 243 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 321 (488)
.+....+.+.. .......++.++.+.+.++.+.+ ++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 56666666532 22233445778888888888874 344455553 8889999888887 45456777888999999999
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 401 (488)
++. .++......+.+ +.+++++|.+. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+
T Consensus 174 ~l~-~l~~~~~~~~~L-~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNL-NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred hhh-hhhhhhhhhhhh-hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence 888 666555445555 77888888887 55554445566888888888654 556667778888888888887763 35
Q ss_pred ccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
..+..++.+++|++++|.++.... +....+++.|+++++.++...+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 667777888888888888885544 777788888888888887655543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-10 Score=110.69 Aligned_cols=202 Identities=38% Similarity=0.467 Sum_probs=154.7
Q ss_pred EEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCC-CccEEEcccccccCCCCccccCCccccEEecCCC
Q 041473 219 RFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ-KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 219 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
.+....+.+... ...+...+.++.|++.++.+....+ ...... +|+.|++++|.+. ..+..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666655322 2234556789999999998885443 334443 8999999999887 44456788999999999999
Q ss_pred ccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCc
Q 041473 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP 377 (488)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 377 (488)
++. ..+......++|+.|++++|++. .+|........+ +++.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 998 55555546789999999999998 777654333334 78899999654 45566778889999999999987 546
Q ss_pred cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhc
Q 041473 378 NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEN 430 (488)
Q Consensus 378 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 430 (488)
..+..+++++.|++++|.+..... +....+++.|+++++.++..++.....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhcc
Confidence 778889999999999999985544 888899999999999999777655543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.2e-11 Score=120.34 Aligned_cols=131 Identities=25% Similarity=0.342 Sum_probs=101.0
Q ss_pred CCccCcEEeccCCC--CCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCc
Q 041473 14 SLSKLRTLAVHFNN--LSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91 (488)
Q Consensus 14 ~~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 91 (488)
.++.|++|-+.++. +.......|..++.|+.||+++|.-...+|..++.+-+||+|+++++.+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 45679999888885 55455566899999999999998766689999999999999999999999 8999999999999
Q ss_pred EEecccCCcCCCCCcchhccCCCCcEEEcCCCccc--ccCCccccCCCCCceeeccc
Q 041473 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT--GPIPASISNASNLMRLTIQK 146 (488)
Q Consensus 92 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~ 146 (488)
+|++..+.....+ ..+...+.+||+|.+...... ......+.++.+|+.+++..
T Consensus 622 ~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 622 YLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred eeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999988765344 455546999999999765422 12223345566666666543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-10 Score=76.46 Aligned_cols=61 Identities=39% Similarity=0.530 Sum_probs=39.3
Q ss_pred CCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccc
Q 041473 384 VRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 384 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
|+|++|++++|++....+++|.++++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655556666666666666666666655556666666666666666653
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-11 Score=116.51 Aligned_cols=199 Identities=25% Similarity=0.251 Sum_probs=136.7
Q ss_pred CCCccEEEcccccccCCC-CccccCCccccEEecCCCccCCCCCccccCC-CCCcEEEccCCcCccccchhh--------
Q 041473 262 LQKLQRLRLKGNKFLGEI-PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKC-KNLILLDLSNNNLTGTIPTEV-------- 331 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-------- 331 (488)
+++++.+.+-...-.+.. |..+..+.+|++|.+.+|++.. ...+..+ ..|+.|... +.+. .+...+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~-Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLD-ALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHH-HHHHHHHHhccccc
Confidence 344555555443333222 5556778899999999988863 1112111 234444322 2111 111111
Q ss_pred --hcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCC
Q 041473 332 --IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409 (488)
Q Consensus 332 --~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 409 (488)
..+..+ ...+.++|.+. ..-.++.-++.++.|+|++|+++ ... .+..++.|+.|||+.|++.....-...+|.
T Consensus 159 ns~~Wn~L-~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 159 NSPVWNKL-ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK- 233 (1096)
T ss_pred cchhhhhH-hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhh-
Confidence 112233 56778888887 45567777899999999999998 333 788999999999999999843322334444
Q ss_pred CCEEeccCcccCCccchhhhccccCceeeccCccccc--ccCCccccCCcceeeecCCCCcccc
Q 041473 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG--EVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 410 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
|+.|.+++|-++.. ..+.++.+|+.||++.|-+.+ .+..++.+..|+.|.+.|||..|..
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999999998843 467889999999999998875 3667899999999999999999986
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-11 Score=111.78 Aligned_cols=159 Identities=30% Similarity=0.459 Sum_probs=94.0
Q ss_pred cCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhc
Q 041473 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYN 86 (488)
Q Consensus 7 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 86 (488)
++|+.+..|-.|..+.+..|.+. .+|....++..|.+++++.|++. ..|..+..++ |++|.+++|.++ .+|..++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence 34555555666666666666665 55556666666666666666665 4455555555 666666666666 56666665
Q ss_pred cCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceee
Q 041473 87 LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVS 166 (488)
Q Consensus 87 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 166 (488)
..+|..|+.+.|++. .+|..+. .+.+|+.|.++.|++. .+|+.+.. -.|..||++.|++...+..+..+..|++|.
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceeecchhhhhhhhheeee
Confidence 666666666666666 5555555 4556666666655555 44544442 234456666666655555566666666666
Q ss_pred ccccccC
Q 041473 167 FSLNHLG 173 (488)
Q Consensus 167 l~~~~~~ 173 (488)
+..|.++
T Consensus 241 LenNPLq 247 (722)
T KOG0532|consen 241 LENNPLQ 247 (722)
T ss_pred eccCCCC
Confidence 6655554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=108.14 Aligned_cols=113 Identities=33% Similarity=0.498 Sum_probs=103.2
Q ss_pred eeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 338 ~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
++.|+++++.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++....|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 37899999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccCCccchhhhcc-ccCceeeccCcccccccCC
Q 041473 418 NNLSGRIPKYFENF-FFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 418 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~ 450 (488)
|.+++.+|..+... .++..+++.+|+..|..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999888764 4778999999988776553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=73.52 Aligned_cols=61 Identities=41% Similarity=0.551 Sum_probs=48.9
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCccc
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 420 (488)
|+|++|++++|.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888855556778888888888888888877778888888888888888864
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-10 Score=97.20 Aligned_cols=180 Identities=21% Similarity=0.215 Sum_probs=90.9
Q ss_pred CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeecc
Q 041473 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFS 168 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 168 (488)
.|+++||+...++-.--..+...+.+|+.|.+.+.+++..+...+.....|+.++++.+.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG------------------- 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG------------------- 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc-------------------
Confidence 3555555555443111112233455555555555555544444455555555555554321
Q ss_pred ccccCCCCCCchhhhhhhccCCCccEEecCCCcc-cccCchhhhhhhccccEEEcccccccc---ccchhccCCCCCCEE
Q 041473 169 LNHLGNGEKDDLEFVSSLVNASRLEMMEISINNF-GGMLPESVGNLSTRLKRFTVGNNQLFG---NIPSGLGNLVNLELL 244 (488)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L 244 (488)
+ ...+.-.-+.+++.|..++++++.. .+.....+.+..++++.|+++++.-.- .+..-...+++|.+|
T Consensus 247 ---~-----t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 247 ---F-----TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred ---c-----chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 1 1112223344555566666665532 223334455556788888888875321 111122467788888
Q ss_pred EccCCcC-CCCccccccCCCCccEEEcccccccCCCCc---cccCCccccEEecCCC
Q 041473 245 DLGDNQF-TGRILGSIGDLQKLQRLRLKGNKFLGEIPS---SVGNLTLLFTLSFEGN 297 (488)
Q Consensus 245 ~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 297 (488)
|++++.. .......|.+++.|++|.++.|.. ..|. .+...|+|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8877643 223344555667777777777642 2222 2344455555555544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.5e-09 Score=89.27 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=18.1
Q ss_pred cccEEEccccccccc-cchhccCCCCCCEEEccCCcCC
Q 041473 216 RLKRFTVGNNQLFGN-IPSGLGNLVNLELLDLGDNQFT 252 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~ 252 (488)
.+.-|+++.+++... ..+.+.+++.|..|.++.+.+.
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 333444444444321 1223555666666666666554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-08 Score=85.36 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=51.0
Q ss_pred hhhhhccccEEEccccccccc-cchhccCCCCCCEEEccCCcCCCC-ccccccCCCCccEEEcccccccCCCCc------
Q 041473 210 VGNLSTRLKRFTVGNNQLFGN-IPSGLGNLVNLELLDLGDNQFTGR-ILGSIGDLQKLQRLRLKGNKFLGEIPS------ 281 (488)
Q Consensus 210 ~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~------ 281 (488)
+.+.++++..+.+..|.+... .......++.+.-|++..+.+... ....+.++++|+-|+++++++.+....
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE
Confidence 344456777777777765432 233445566667777777777643 334567778888888888877653321
Q ss_pred cccCCccccEEe
Q 041473 282 SVGNLTLLFTLS 293 (488)
Q Consensus 282 ~~~~~~~L~~L~ 293 (488)
.++.+++++.|+
T Consensus 274 lIaRL~~v~vLN 285 (418)
T KOG2982|consen 274 LIARLTKVQVLN 285 (418)
T ss_pred EEeeccceEEec
Confidence 234556666554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-09 Score=91.95 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=112.1
Q ss_pred ccccEEEccccccccc-cchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC--ccccCCccccE
Q 041473 215 TRLKRFTVGNNQLFGN-IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP--SSVGNLTLLFT 291 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~ 291 (488)
++++.++++...++.. ....+..|.+|+.|.+.++.+.+.....++...+|+.++++++.-..... ..+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4688888888777642 33345677888888888888877677777777888888888874321211 23567888888
Q ss_pred EecCCCccCCCCCcc-cc-CCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC
Q 041473 292 LSFEGNRLEGSIPSS-LG-KCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369 (488)
Q Consensus 292 L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 369 (488)
|++++|......... +. --++|+.|+++|+.-. ++ ...+...-..+|+|.+||+++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------l~----------------~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------LQ----------------KSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------hh----------------hhHHHHHHHhCCceeeecccc
Confidence 888888765332221 11 1256777777776311 00 001111224567777777777
Q ss_pred C-cccCCCccccccCCCCCEEecCCccccccCcc---cccCCCCCCEEeccCccc
Q 041473 370 N-KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS---SFSSLRGIQNLDLSRNNL 420 (488)
Q Consensus 370 n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~ 420 (488)
| .++......|..++.|++|.+++|..- .|. .+...|+|.+|++.+|-=
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 6 444333445666777778877777542 332 344567888888887743
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-08 Score=98.15 Aligned_cols=218 Identities=25% Similarity=0.244 Sum_probs=107.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
.+++.+++.++.+..... .+..+++|++|++++|.+... ..+..++.|+.|++.+|.+.+.. .+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc--CCccchhhhcccC
Confidence 466666666666653321 145566666666666666532 23444555666666666665321 2334666666666
Q ss_pred CCCccCCCCC-ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCC--ccEEEccCCc
Q 041473 295 EGNRLEGSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN--LGVLDVSENK 371 (488)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~n~ 371 (488)
++|.+...-+ . ...+.+++.+.+.+|.+........ .... ..+++..|.+...-+ +..+.. |+.+++++|+
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~--~~~l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL--LKKL-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcccchHH--HHHH-HHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 6666653322 1 3445566666666665542211111 1111 122444554442111 111222 5666666666
Q ss_pred ccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc---cch-hhhccccCceeeccCccccc
Q 041473 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR---IPK-YFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 372 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~-~l~~l~~L~~L~l~~n~~~~ 446 (488)
+. ..+..+..+..+..+++.+|++.. ...+...+.+..+....+.+... ... .....+.++.+.+.+|+...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 65 333444555666666666665542 12234445555555555554421 111 13344556666666666554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-08 Score=96.79 Aligned_cols=129 Identities=25% Similarity=0.309 Sum_probs=72.9
Q ss_pred CCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcE
Q 041473 38 NLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEV 117 (488)
Q Consensus 38 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 117 (488)
.+..++.+.+..+.+.. ....+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+ .+...- .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchh--hccchhh
Confidence 45556666666666542 2233566677777777777766 33333556677777777777766 333222 3555777
Q ss_pred EEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccC
Q 041473 118 LNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLG 173 (488)
Q Consensus 118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 173 (488)
|++.+|.+. ....+..+..|+.+++++|.+...... ...+.+++.+.+..+.+.
T Consensus 145 L~l~~N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 777777664 223344466666666666665544332 344555555555555443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-08 Score=84.20 Aligned_cols=197 Identities=23% Similarity=0.293 Sum_probs=101.5
Q ss_pred cCCCCcEEEcCCCcccccCCc----cccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhh
Q 041473 111 TLPNLEVLNFGNNQFTGPIPA----SISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSS 185 (488)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
.||+|+.+++++|.+....|. .+.....|+||.+++|........ +++ .|. +.+....
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~---------------~la~nKK 152 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALF---------------HLAYNKK 152 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHH---------------HHHHHhh
Confidence 466666677666665544443 234456677777776655432211 110 000 0012222
Q ss_pred hccCCCccEEecCCCcccccCc---hhhhhhhccccEEEccccccccc-----cchhccCCCCCCEEEccCCcCCCC---
Q 041473 186 LVNASRLEMMEISINNFGGMLP---ESVGNLSTRLKRFTVGNNQLFGN-----IPSGLGNLVNLELLDLGDNQFTGR--- 254 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~--- 254 (488)
..+-+.|++.....|++..-.. ......-..++.+.+..|.|... ....+.++++|+.|++++|.++..
T Consensus 153 aa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred hccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 2333445555554444321111 11111113566666666655422 222356678899999998877632
Q ss_pred -ccccccCCCCccEEEcccccccCCCCccc------cCCccccEEecCCCccCCCCCcc-----c--cCCCCCcEEEccC
Q 041473 255 -ILGSIGDLQKLQRLRLKGNKFLGEIPSSV------GNLTLLFTLSFEGNRLEGSIPSS-----L--GKCKNLILLDLSN 320 (488)
Q Consensus 255 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~~ 320 (488)
....+...+.|+.|++.+|.+.......+ ...|+|..|...+|.+.+..... + ..+|-|..+.+.+
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 23345556778899998887654332211 23577788777777554322111 1 1345666667777
Q ss_pred CcCc
Q 041473 321 NNLT 324 (488)
Q Consensus 321 ~~~~ 324 (488)
|.+.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 7665
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-09 Score=101.65 Aligned_cols=127 Identities=28% Similarity=0.271 Sum_probs=79.0
Q ss_pred CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccc-cccCCCCCEEe
Q 041473 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS-LGSCVRLEQLV 390 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~ 390 (488)
.|.+.+.+.|.+. .+...+.-++.+ +.|+++.|++.... .+..+++|++|||+.|.+. .+|.. ...|. |..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 4556666666665 455555444555 67777777776332 5566777777777777776 44432 22333 77777
Q ss_pred cCCccccccCcccccCCCCCCEEeccCcccCCc-cchhhhccccCceeeccCccccc
Q 041473 391 MNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR-IPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+++|.++. ...+.++.+|+.||+++|-+.+. ...-++.+..|+.|+|.||++-+
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 77777662 23456677777777777765533 12335566777788888887643
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.2e-08 Score=83.96 Aligned_cols=193 Identities=22% Similarity=0.251 Sum_probs=100.5
Q ss_pred hccCCCCCCEEEccCCcCCCCcc----ccccCCCCccEEEcccccccCCCCccc-------------cCCccccEEecCC
Q 041473 234 GLGNLVNLELLDLGDNQFTGRIL----GSIGDLQKLQRLRLKGNKFLGEIPSSV-------------GNLTLLFTLSFEG 296 (488)
Q Consensus 234 ~l~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~ 296 (488)
.+..||.|+.+++++|.+....+ ..++.-..|++|.+.+|.+.......+ ..-|.|+++.+.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45567778888888777654332 234445667777777776542222111 1224455555555
Q ss_pred CccCCCCC----ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcc
Q 041473 297 NRLEGSIP----SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372 (488)
Q Consensus 297 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 372 (488)
|++..... ..+..-.+|+++.+..|.|. |..+..+ ....+..+.+|+.||+++|.+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L-----------------~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTML-----------------AFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH-----------------HHHHHHHhCcceeeeccccch
Confidence 44431110 01111134444444444333 2211100 001223456788888888877
Q ss_pred cCC----CccccccCCCCCEEecCCccccccCccc----cc--CCCCCCEEeccCcccCCcc------chhh-hccccCc
Q 041473 373 SGE----IPNSLGSCVRLEQLVMNGNFFQGNIPSS----FS--SLRGIQNLDLSRNNLSGRI------PKYF-ENFFFLQ 435 (488)
Q Consensus 373 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~--~l~~L~~L~l~~n~~~~~~------~~~l-~~l~~L~ 435 (488)
+.. ...++...+.|++|.+.+|-+...+... |. ..|+|+.|...+|...+.+ +... ..+|-|.
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 632 2334455667888888888766544322 22 2477888888888654321 1111 4456777
Q ss_pred eeeccCccccc
Q 041473 436 NLNLSSNHFEG 446 (488)
Q Consensus 436 ~L~l~~n~~~~ 446 (488)
.+.+.||++..
T Consensus 307 ~le~ngNr~~E 317 (388)
T COG5238 307 DLERNGNRIKE 317 (388)
T ss_pred HHHHccCcchh
Confidence 77777777764
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=71.56 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=45.5
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc-ccccCCCCCCEEeccC
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSR 417 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 417 (488)
..+++++|.+.. ...|..++.|.+|.+.+|.|++..|..-.-+++|+.|.+.+|++..... .-+..||+|++|.+-+
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 345555555431 1234445555555555555554333333334455555555555443221 2233445555555555
Q ss_pred cccCCccc---hhhhccccCceeeccC
Q 041473 418 NNLSGRIP---KYFENFFFLQNLNLSS 441 (488)
Q Consensus 418 n~~~~~~~---~~l~~l~~L~~L~l~~ 441 (488)
|++...-- ..+..+|+|+.||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 55442211 2234445555555443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-07 Score=72.18 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=36.5
Q ss_pred ccEEEccCCcccCCCccccc-cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 362 LGVLDVSENKLSGEIPNSLG-SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
|+..+|++|.+. ..|..|. .++..+.+++++|.+. ..|+.+..++.|+.|+++.|++. ..|+.+..+.++..|+.-
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444444444444 3332222 2334455555555554 23333455555555555555554 344444444555555554
Q ss_pred Cccc
Q 041473 441 SNHF 444 (488)
Q Consensus 441 ~n~~ 444 (488)
+|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-07 Score=70.76 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCCcEEEccCCcCccccchhhhcccCc--eeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCE
Q 041473 311 KNLILLDLSNNNLTGTIPTEVIGLSSL--SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388 (488)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (488)
..+..++++.|++. .+++.+..+... ++.+++++|.+....+..-..++..+.+++++|.+. .+|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34677889999876 555554433322 257899999999554444455678999999999999 88888999999999
Q ss_pred EecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 389 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
|+++.|.+. ..|..+..+.++-.|+..+|..... |..+-.-...-..++.++++.+-.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei-d~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI-DVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccccC-cHHHhccccHHHHHhcCCcccccCc
Confidence 999999998 5666666699999999999988844 4334333444455666667776555
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4e-07 Score=82.24 Aligned_cols=258 Identities=16% Similarity=0.102 Sum_probs=119.1
Q ss_pred cCCCccEEecCCCc-ccccCchhhhhhhccccEEEccccc-cccccch-hccCCCCCCEEEccCCcC-CCC-ccccccCC
Q 041473 188 NASRLEMMEISINN-FGGMLPESVGNLSTRLKRFTVGNNQ-LFGNIPS-GLGNLVNLELLDLGDNQF-TGR-ILGSIGDL 262 (488)
Q Consensus 188 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~l~~L~~L~L~~~~~-~~~-~~~~l~~l 262 (488)
.+++++.+.+.++. +.+.....+...+++++.+++..|. ++...-. --..+++|++++++++.- .+. ......++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 34444444444432 2333334444555566666666543 2222212 123466666666666532 111 11223344
Q ss_pred CCccEEEcccccccCC--CCccccCCccccEEecCCCc-cCCCC-CccccCCCCCcEEEccCCcC-ccccchhhhcccCc
Q 041473 263 QKLQRLRLKGNKFLGE--IPSSVGNLTLLFTLSFEGNR-LEGSI-PSSLGKCKNLILLDLSNNNL-TGTIPTEVIGLSSL 337 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~l 337 (488)
..++.+..++|.-.+. +...-..+..+.++++..|. ++... ...-..+..|+.++.++|.- .+..-..+..-...
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 4555555555431110 00011233444444444442 22111 11112345566666666532 21112222222223
Q ss_pred eeEEEccCCc-ccccCCccc-cCCCCccEEEccCCcccC--CCccccccCCCCCEEecCCcc-ccccCcccc----cCCC
Q 041473 338 SIYLDLSKNQ-LNGPLPSNF-GILKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLVMNGNF-FQGNIPSSF----SSLR 408 (488)
Q Consensus 338 ~~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~----~~l~ 408 (488)
++.+.++.|+ ++......+ ...+.|+.+++.++.... .+...-.+++.|+++.+++|. +++.+-..+ .++.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 3555555553 221111111 234567777777764331 123334467777777777774 443322222 3456
Q ss_pred CCCEEeccCcccC-CccchhhhccccCceeeccCcccc
Q 041473 409 GIQNLDLSRNNLS-GRIPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 409 ~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
.|+.+.+++|+.+ +...+.+..+++|+.+++.+|.-.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 7777788887654 234456677777888877777543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.2e-06 Score=49.98 Aligned_cols=36 Identities=36% Similarity=0.581 Sum_probs=18.5
Q ss_pred CCCEEeccCcccCCccchhhhccccCceeeccCcccc
Q 041473 409 GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 409 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
+|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555554
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.1e-07 Score=81.08 Aligned_cols=296 Identities=17% Similarity=0.117 Sum_probs=162.1
Q ss_pred CCceeecccCCCccCCCC---cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCC-cccccCchhhhhh
Q 041473 138 NLMRLTIQKNGFSGKVPS---LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN-NFGGMLPESVGNL 213 (488)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~ 213 (488)
.|+.+.++|+.-...-+. ...+++++.|.+.++.. ..+......-..+..++.+.+..+ .+.+.....+..-
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~----iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK----ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhccee----ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 456666665543222111 44556666665555541 112233344445677777777773 4555555556666
Q ss_pred hccccEEEcccccc-ccc-cchhccCCCCCCEEEccCCcCCCC--ccccccCCCCccEEEcccccccCCCCc--cccCCc
Q 041473 214 STRLKRFTVGNNQL-FGN-IPSGLGNLVNLELLDLGDNQFTGR--ILGSIGDLQKLQRLRLKGNKFLGEIPS--SVGNLT 287 (488)
Q Consensus 214 ~~~L~~L~l~~~~~-~~~-~~~~l~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~ 287 (488)
+++|++++++.|.- .+. ......++..++.+...||.-.+. ....-..++.+.++++..|........ .-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 67888888888742 221 112345566677777776532211 111112345566667666643211111 123567
Q ss_pred cccEEecCCCcc-CCCCCcc-ccCCCCCcEEEccCCcC-ccccchhhh-cccCceeEEEccCCccc--ccCCccccCCCC
Q 041473 288 LLFTLSFEGNRL-EGSIPSS-LGKCKNLILLDLSNNNL-TGTIPTEVI-GLSSLSIYLDLSKNQLN--GPLPSNFGILKN 361 (488)
Q Consensus 288 ~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~-~~~~l~~~L~l~~~~~~--~~~~~~~~~l~~ 361 (488)
.|+.+..+++.- +.....+ -.++++|+.+.+.+|+. ++.--..+. .++.+ +.+++..+... +.+...-.+++.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L-e~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL-ERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh-hhhcccccceehhhhHhhhccCCch
Confidence 788888777633 2222222 34578888888888863 211111222 23333 56666666432 112233345788
Q ss_pred ccEEEccCCcc-cCCC----ccccccCCCCCEEecCCccc-cccCcccccCCCCCCEEeccCccc-CCc-cchhhhcccc
Q 041473 362 LGVLDVSENKL-SGEI----PNSLGSCVRLEQLVMNGNFF-QGNIPSSFSSLRGIQNLDLSRNNL-SGR-IPKYFENFFF 433 (488)
Q Consensus 362 L~~L~l~~n~l-~~~~----~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~-~~~-~~~~l~~l~~ 433 (488)
|+++.+++|.. ++.. ...-.....|..+.+.++.. ++...+.+..++.|+.+++-+|+- +.. +...-..+|+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 99999998843 3331 22234567899999999864 445556777889999999999953 322 2222355666
Q ss_pred Cceee
Q 041473 434 LQNLN 438 (488)
Q Consensus 434 L~~L~ 438 (488)
++..-
T Consensus 454 i~v~a 458 (483)
T KOG4341|consen 454 IKVHA 458 (483)
T ss_pred ceehh
Confidence 65543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=1e-05 Score=49.55 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=15.5
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+|++|++++|++++ .+..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2223444445555555555444
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.7e-06 Score=84.73 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=79.1
Q ss_pred CCccEEEeeccccc-cccchhhh-ccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCce
Q 041473 64 KRMRSIGFGANKLS-GEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMR 141 (488)
Q Consensus 64 ~~L~~L~l~~~~l~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 141 (488)
.+|++|++++.... ...+..++ -+|+|+.|.+.+-.+...--..++.++|+|+.||+++++++. ...++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHHH
Confidence 55666666664332 22333333 356666666666544322122344456666666666666652 145556666666
Q ss_pred eecccCCCcc--CCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccE
Q 041473 142 LTIQKNGFSG--KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKR 219 (488)
Q Consensus 142 L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 219 (488)
|.+.+-.+.. ....+..+++|+.|+++...............+.-..++.|+.++.+++.+.+.+.+.+...-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6665554432 12235556666666666554443332222233344445666666666665555544443332234444
Q ss_pred EE
Q 041473 220 FT 221 (488)
Q Consensus 220 L~ 221 (488)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0001 Score=68.54 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=79.7
Q ss_pred ccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCC-cCccccchhhhcccCc
Q 041473 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN-NLTGTIPTEVIGLSSL 337 (488)
Q Consensus 259 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l 337 (488)
+..+.+++.|++++|.+. .+|. -.++|++|.+++|.-....|..+. ++|+.|++++| .+. .+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------- 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------- 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc-------
Confidence 344678889999988766 4442 245688888887654446665553 57888888888 343 44432
Q ss_pred eeEEEccCCcccccCCccccCCCCccEEEccCCc-cc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEec
Q 041473 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK-LS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL 415 (488)
Q Consensus 338 ~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 415 (488)
++.|++..+... .++ . -.++|+.|.+.++. .. ...+.. -+++|+.|++.+|... ..|..+. .+|+.|++
T Consensus 114 Le~L~L~~n~~~-~L~-~--LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 114 VRSLEIKGSATD-SIK-N--VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred cceEEeCCCCCc-ccc-c--CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 256666554432 111 1 11456777775432 11 011211 2367888888877755 2333333 57888887
Q ss_pred cCcc
Q 041473 416 SRNN 419 (488)
Q Consensus 416 ~~n~ 419 (488)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7653
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.8e-05 Score=61.60 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=59.7
Q ss_pred cccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccC
Q 041473 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLS 88 (488)
Q Consensus 9 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 88 (488)
+.+|..+.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|..++.++.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 45677777777777764 455455667777777777777764 5545556677777777777765 33324455566677
Q ss_pred CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCC
Q 041473 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL 139 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 139 (488)
+++.+.+..+ +. .++...+.++ +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777654 44 5555555455 677776654 2332334445555444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=67.17 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC-ccCCCCCccccCCCCCcE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN-RLEGSIPSSLGKCKNLIL 315 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 315 (488)
.+.+++.|++++|.+... + .+ .++|+.|.+.+|.-....|..+ .++|++|++++| .+. .+| ++|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccce
Confidence 345556666665544422 2 11 1346666666543332333322 346666666665 222 222 34555
Q ss_pred EEccCCcCccccchhhhcccCceeEEEccCCc-cc-ccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCC
Q 041473 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQ-LN-GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG 393 (488)
Q Consensus 316 L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 393 (488)
|++..+... . +..++..++.|.+.+++ .. ...+..+ .++|++|++++|... ..|..+ ..+|+.|+++.
T Consensus 117 L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-c----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc--cccCcEEEecc
Confidence 655544322 1 11122222444443221 10 0111111 256777777777655 444443 35777777766
Q ss_pred c
Q 041473 394 N 394 (488)
Q Consensus 394 n 394 (488)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.6e-05 Score=62.98 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=93.7
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+.+++.+.++. .+...-.-......+|+++|.+. .+ ..|..++.|..|.+.+|+|+.+.+..-..++.|+.|.+.+|
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45666666554 22111112346788999999886 33 35778899999999999999888888788899999999999
Q ss_pred ccCCcc-chhhhccccCceeeccCccccc----ccCCccccCCcceeeecC
Q 041473 419 NLSGRI-PKYFENFFFLQNLNLSSNHFEG----EVPIKGVFSNSSAISLDG 464 (488)
Q Consensus 419 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~~~L~~l~l~~ 464 (488)
++.... .+-+..||+|++|.+-+|+.+. ++.....+++|+.||..+
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 988552 3557899999999999999885 355677788998888764
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=58.06 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=44.3
Q ss_pred cccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCC
Q 041473 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361 (488)
Q Consensus 282 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~ 361 (488)
.|.++++|+.+.+.. .+......+|..+++|+.+.+.++ +. . .....|..++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~------------------------i~~~~F~~~~~ 59 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-S------------------------IGDNAFSNCKS 59 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-C------------------------E-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-c------------------------cceeeeecccc
Confidence 455555666666553 333344445555555666655543 22 2 22233444444
Q ss_pred ccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccC
Q 041473 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434 (488)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 434 (488)
++.+.+.+ .+.......|..+++|+.+++..+ +.......|.++ +|+.+.+.+ .+.......|.++++|
T Consensus 60 l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 60 LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555543 222122334445555555555443 333444455555 555555554 3333444555555544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.1e-05 Score=79.42 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=88.3
Q ss_pred ccCcEEeccCCCC-CCCcCcc-ccCCccccccccccccccccc-chhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 16 SKLRTLAVHFNNL-SGEIPSS-FGNLSSLEFLSAAVNQFVGQI-PETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 16 ~~L~~L~l~~~~l-~~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
.+||+|++++... ....+.. -..+|+|+.|.++|-.+.... -.....+++|+.||+++++++. + .++.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 4688888887532 2122222 345788999999887764222 2345688999999999988883 3 67888899999
Q ss_pred EecccCCcCCCCC--cchhccCCCCcEEEcCCCcccccC--C----ccccCCCCCceeecccCCCcc
Q 041473 93 LDFPVNQLQGSLP--SDIGFTLPNLEVLNFGNNQFTGPI--P----ASISNASNLMRLTIQKNGFSG 151 (488)
Q Consensus 93 L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~--~----~~~~~l~~L~~L~l~~~~~~~ 151 (488)
|.+.+=++. ... ..++ ++++|+.||++........ . +.-..+|+|+.||.+++.+..
T Consensus 200 L~mrnLe~e-~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCC-chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 888887665 222 2445 6889999999876543111 1 122347889999998877654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=1.5e-05 Score=68.43 Aligned_cols=96 Identities=25% Similarity=0.258 Sum_probs=69.4
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc-ccccCCCCCCEEeccC
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSR 417 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 417 (488)
++|++.+|.+.++ .....++.|++|.|+-|.|+.. ..+..|++|++|+|+.|.|.+.-. +.+.++|+|+.|.|..
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 5677777777632 2345678899999999998743 346789999999999998874322 3456889999999998
Q ss_pred cccCCccc-----hhhhccccCceee
Q 041473 418 NNLSGRIP-----KYFENFFFLQNLN 438 (488)
Q Consensus 418 n~~~~~~~-----~~l~~l~~L~~L~ 438 (488)
|+=.+..+ ..++.+|+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 87665533 3456677777774
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00028 Score=60.49 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=41.0
Q ss_pred ccCCcccccccccccccccccchhhcCCCCccEEEeecc--ccccccchhhhccCCCcEEecccCCcCCCCCcch--hcc
Q 041473 36 FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN--KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI--GFT 111 (488)
Q Consensus 36 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~ 111 (488)
...+..|+.+.+.+..++.. ..|..+++|++|.++.| .+...++.....+++|+++++++|++. . +..+ ...
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhh
Confidence 33444455555554444321 12445556666666666 444334444444566666666666554 1 1111 113
Q ss_pred CCCCcEEEcCCCcc
Q 041473 112 LPNLEVLNFGNNQF 125 (488)
Q Consensus 112 l~~L~~L~l~~~~~ 125 (488)
+.+|..|++..|..
T Consensus 115 l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 115 LENLKSLDLFNCSV 128 (260)
T ss_pred hcchhhhhcccCCc
Confidence 44555555555543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=3e-05 Score=76.91 Aligned_cols=186 Identities=22% Similarity=0.121 Sum_probs=97.6
Q ss_pred hccccEEEccccccccc--cchhccCCCCCCEEEccCC-cCCCC----ccccccCCCCccEEEccccc-ccCCCCcccc-
Q 041473 214 STRLKRFTVGNNQLFGN--IPSGLGNLVNLELLDLGDN-QFTGR----ILGSIGDLQKLQRLRLKGNK-FLGEIPSSVG- 284 (488)
Q Consensus 214 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~L~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~- 284 (488)
.+.++.+.+.++..... .......++.|++|+++++ ..... .......+++|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46788888877743322 2344567788888888873 11111 11233445778888888876 4433222332
Q ss_pred CCccccEEecCCCc-cCCCC-CccccCCCCCcEEEccCCcCccc--cchhhhcccCceeEEEccCCcccccCCccccCCC
Q 041473 285 NLTLLFTLSFEGNR-LEGSI-PSSLGKCKNLILLDLSNNNLTGT--IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360 (488)
Q Consensus 285 ~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~ 360 (488)
.+++|++|.+..|. ++... ......+++|++|+++.|..... +......++.+ +.+.+.. ...++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l-~~l~~~~----------~~~c~ 335 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL-RELKLLS----------LNGCP 335 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch-hhhhhhh----------cCCCc
Confidence 37788888877665 44322 22334577788888887754311 12222222222 2222111 11134
Q ss_pred CccEEEccCCccc---CCCccccccCCCCCEEecCCccccccC-cccccCCCCC
Q 041473 361 NLGVLDVSENKLS---GEIPNSLGSCVRLEQLVMNGNFFQGNI-PSSFSSLRGI 410 (488)
Q Consensus 361 ~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L 410 (488)
.++.+.+.++... ......+..+++++.+.+..+.+.+.. ...+.+|+.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4555555443221 122234556777888877777754433 2445556655
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=2.8e-05 Score=66.81 Aligned_cols=99 Identities=21% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCcc-chhhhccccCcee
Q 041473 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRI-PKYFENFFFLQNL 437 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L 437 (488)
+.+.++|++=||.+.++ . ....++.|+.|.|+-|.|+. .+.|..|++|++|+|+.|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH-H-HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678888889988732 2 34478999999999999973 356788999999999999988553 2667889999999
Q ss_pred eccCcccccccCC------ccccCCcceee
Q 041473 438 NLSSNHFEGEVPI------KGVFSNSSAIS 461 (488)
Q Consensus 438 ~l~~n~~~~~~~~------~~~~~~L~~l~ 461 (488)
+|..|+=.+.-+. ++.+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999986654442 45678888775
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00036 Score=59.80 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=74.9
Q ss_pred CCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc--cccccCcccccCCCCCCEEeccCcccCCc-cchhh
Q 041473 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN--FFQGNIPSSFSSLRGIQNLDLSRNNLSGR-IPKYF 428 (488)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l 428 (488)
+......+..|+.+.+.+..++ .. ..|..+++|++|.++.| ++...+......+|+|+++++++|++.-. -..-+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 4445556677888888888776 22 24556889999999999 66656666667779999999999987721 11345
Q ss_pred hccccCceeeccCcccccc-cCC---ccccCCcceee
Q 041473 429 ENFFFLQNLNLSSNHFEGE-VPI---KGVFSNSSAIS 461 (488)
Q Consensus 429 ~~l~~L~~L~l~~n~~~~~-~~~---~~~~~~L~~l~ 461 (488)
..+++|..|++.+|..+.. -+. ...+++|+.++
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6677888999999987752 121 23455666554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00012 Score=72.53 Aligned_cols=238 Identities=20% Similarity=0.113 Sum_probs=128.6
Q ss_pred cCCCccEEecCCCc-ccccCchhhhhhhccccEEEcccc-cccccc----chhccCCCCCCEEEccCCc-CCCCcccccc
Q 041473 188 NASRLEMMEISINN-FGGMLPESVGNLSTRLKRFTVGNN-QLFGNI----PSGLGNLVNLELLDLGDNQ-FTGRILGSIG 260 (488)
Q Consensus 188 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~ 260 (488)
..+.++.+.+..+. +.+.....+....+.|+++++.++ ...... ......+++|+.|+++.+. +.+.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46788888887663 332223344444578999998873 221111 1233456888999998887 5544444443
Q ss_pred C-CCCccEEEccccc-ccCCCC-ccccCCccccEEecCCCccCCC--CCccccCCCCCcEEEccCCcCccccchhhhccc
Q 041473 261 D-LQKLQRLRLKGNK-FLGEIP-SSVGNLTLLFTLSFEGNRLEGS--IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLS 335 (488)
Q Consensus 261 ~-l~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 335 (488)
. +++|+.|.+.+|. +++..- .....++.|++|++++|..... .......+++++.+.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 3 7889999988776 343222 2335688899999998855311 222344577777766544431 00
Q ss_pred CceeEEEccCCcc---cccCCccccCCCCccEEEccCCcccCCC-ccccccCCCCCEEecCCccccccCcccccCCCCCC
Q 041473 336 SLSIYLDLSKNQL---NGPLPSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411 (488)
Q Consensus 336 ~l~~~L~l~~~~~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 411 (488)
.+ +.+.+..+.. .....-....+++++.+.+.++...... ...+.+|+.|+ ..+..+ .....+++
T Consensus 336 ~l-~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~ 404 (482)
T KOG1947|consen 336 SL-TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLR 404 (482)
T ss_pred cH-HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccc
Confidence 00 1111111110 0112223456788888888887744222 23344455542 222111 11222378
Q ss_pred EEeccCcccCCc-cchhhhc-cccCceeeccCccccc
Q 041473 412 NLDLSRNNLSGR-IPKYFEN-FFFLQNLNLSSNHFEG 446 (488)
Q Consensus 412 ~L~l~~n~~~~~-~~~~l~~-l~~L~~L~l~~n~~~~ 446 (488)
.|+++.|..... .-..... +..++.+++.+|+...
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 888888864422 2222222 6677888888886553
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.00091 Score=55.04 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=62.6
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCcccc-ccCcccccC-CCCCCEEeccCc-ccCCccchhhhccccCce
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ-GNIPSSFSS-LRGIQNLDLSRN-NLSGRIPKYFENFFFLQN 436 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~ 436 (488)
..++.++-+++.|..+.-+.+.++++++.|.+.+|.-. +-.-+-+++ .++|+.|+|++| +|++....++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45778888888887777777888888888888888543 222223333 478888888888 577777788888888888
Q ss_pred eeccCcccc
Q 041473 437 LNLSSNHFE 445 (488)
Q Consensus 437 L~l~~n~~~ 445 (488)
|.+.+=+..
T Consensus 181 L~l~~l~~v 189 (221)
T KOG3864|consen 181 LHLYDLPYV 189 (221)
T ss_pred HHhcCchhh
Confidence 888776654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0018 Score=53.32 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=72.8
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCccc-CCccchhhh-ccccCceeeccCcccccc--cCCccccCCc
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL-SGRIPKYFE-NFFFLQNLNLSSNHFEGE--VPIKGVFSNS 457 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~-~l~~L~~L~l~~n~~~~~--~~~~~~~~~L 457 (488)
.-..++.++-+++.|...+-+-+..+++++.|.+.+|.- ..-..+.++ -.++|+.|+|++|+-.++ +..+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 345678899999999988888899999999999999953 222222232 347999999999964433 5556778999
Q ss_pred ceeeecCCCCcccc---cc--ccccCcchhhhccc
Q 041473 458 SAISLDGNDNLCGG---IS--ELHLSTCSIKESKQ 487 (488)
Q Consensus 458 ~~l~l~~n~~~c~~---~~--~l~~~~c~~~~~~~ 487 (488)
+.|.+.+=|-.-.- .. +=-++.|++..+++
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d~ 213 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCDIVGPDV 213 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCcccceechhh
Confidence 99988875522110 00 11267777766654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.01 Score=29.99 Aligned_cols=12 Identities=58% Similarity=0.836 Sum_probs=6.1
Q ss_pred CCEEeccCcccC
Q 041473 410 IQNLDLSRNNLS 421 (488)
Q Consensus 410 L~~L~l~~n~~~ 421 (488)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.00024 Score=68.69 Aligned_cols=189 Identities=28% Similarity=0.301 Sum_probs=107.9
Q ss_pred CCEEEccCCcCCCCc----cccccCCCCccEEEcccccccCCCCc----cccCC-ccccEEecCCCccCCC----CCccc
Q 041473 241 LELLDLGDNQFTGRI----LGSIGDLQKLQRLRLKGNKFLGEIPS----SVGNL-TLLFTLSFEGNRLEGS----IPSSL 307 (488)
Q Consensus 241 L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~ 307 (488)
+..+.+.+|.+.... ...+...+.|..|++++|.+.+.... .+... ..++.|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566677777665332 23445566777777777766532211 11222 4455555555555432 22233
Q ss_pred cCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC----ccccccC
Q 041473 308 GKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI----PNSLGSC 383 (488)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~ 383 (488)
.....++.++++.|.+. +....... ...+..+....++++|.+++|.++... ...+...
T Consensus 169 ~~~~~l~~l~l~~n~l~---~~g~~~l~--------------~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~ 231 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI---ELGLLVLS--------------QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG 231 (478)
T ss_pred hcccchhHHHHHhcccc---hhhhHHHh--------------hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence 34555666666666543 00000000 011112334567888888888776221 2334445
Q ss_pred CC-CCEEecCCccccccCc----ccccCC-CCCCEEeccCcccCCc----cchhhhccccCceeeccCccccc
Q 041473 384 VR-LEQLVMNGNFFQGNIP----SSFSSL-RGIQNLDLSRNNLSGR----IPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 384 ~~-L~~L~l~~n~l~~~~~----~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
++ +.++++..|.+.+.+. ..+..+ +.++.++++.|++.+. +.+.+..++.++++.+++|++..
T Consensus 232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 55 7778888888875432 334444 6778999999988865 44566777889999999998774
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.027 Score=28.39 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=8.7
Q ss_pred ccEEEeeccccccccchhh
Q 041473 66 MRSIGFGANKLSGEIPFSI 84 (488)
Q Consensus 66 L~~L~l~~~~l~~~~~~~~ 84 (488)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555554 344433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.0042 Score=52.37 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=48.8
Q ss_pred ccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCC
Q 041473 36 FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNL 115 (488)
Q Consensus 36 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 115 (488)
+..+...+.||++.+++... -..|+.++.|..|+++.+.+. ..|..+.....++.+++..|... ..|.... ..+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCCc
Confidence 44455555666666655422 223555556666666666665 55666665556666666665555 5565555 46666
Q ss_pred cEEEcCCCcc
Q 041473 116 EVLNFGNNQF 125 (488)
Q Consensus 116 ~~L~l~~~~~ 125 (488)
+.++..++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666655544
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.083 Score=24.64 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=3.0
Q ss_pred cEEecccC
Q 041473 91 SLLDFPVN 98 (488)
Q Consensus 91 ~~L~l~~~ 98 (488)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.07 Score=27.52 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=7.4
Q ss_pred CCCCEEeccCcccCCcc
Q 041473 408 RGIQNLDLSRNNLSGRI 424 (488)
Q Consensus 408 ~~L~~L~l~~n~~~~~~ 424 (488)
++|++|+|++|.++...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 44555555555554333
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.25 Score=25.99 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=12.5
Q ss_pred CCCcEEecccCCcCCCCCcchh
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIG 109 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~ 109 (488)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5555543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.25 Score=25.99 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=12.5
Q ss_pred CCCcEEecccCCcCCCCCcchh
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIG 109 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~ 109 (488)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5555543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.32 Score=25.53 Aligned_cols=13 Identities=54% Similarity=0.808 Sum_probs=5.5
Q ss_pred CCCEEeccCcccC
Q 041473 409 GIQNLDLSRNNLS 421 (488)
Q Consensus 409 ~L~~L~l~~n~~~ 421 (488)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.32 Score=25.53 Aligned_cols=13 Identities=54% Similarity=0.808 Sum_probs=5.5
Q ss_pred CCCEEeccCcccC
Q 041473 409 GIQNLDLSRNNLS 421 (488)
Q Consensus 409 ~L~~L~l~~n~~~ 421 (488)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.017 Score=48.83 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=73.3
Q ss_pred chhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCC
Q 041473 57 PETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136 (488)
Q Consensus 57 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 136 (488)
...+...+...+||++.|++. .....|..++.+..|+++.+.+. .+|.+.. +...++.++...|..+ ..|..+...
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCcccccc
Confidence 344677788999999999887 56667778888999999999887 8888877 5778888888887777 678888899
Q ss_pred CCCceeecccCCC
Q 041473 137 SNLMRLTIQKNGF 149 (488)
Q Consensus 137 ~~L~~L~l~~~~~ 149 (488)
++++.++..++++
T Consensus 111 ~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 111 PHPKKNEQKKTEF 123 (326)
T ss_pred CCcchhhhccCcc
Confidence 9999999888875
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.97 E-value=0.019 Score=55.77 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=35.2
Q ss_pred ccEEEccccccccc----cchhccCC-CCCCEEEccCCcCCCCc----cccccCCCCccEEEcccccccC
Q 041473 217 LKRFTVGNNQLFGN----IPSGLGNL-VNLELLDLGDNQFTGRI----LGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 217 L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
+.++++..|.+.+. ....+..+ ..+++++++.|.+.+.. ...+..+++++++.+++|.+.+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44455555554432 22233444 56677788877776433 2344456678888888877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 488 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-36 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-36 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-13 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-05 | ||
| 3m18_A | 251 | Crystal Structure Of Variable Lymphocyte Receptor V | 7e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 387 bits (997), Expect = e-127
Identities = 152/494 (30%), Positives = 228/494 (46%), Gaps = 23/494 (4%)
Query: 2 NELVGKVPGKL-GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIP-ET 59
N+ G++P L G+ L L + N+ G +P FG+ S LE L+ + N F G++P +T
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 60 LSELKRMRSIGFGANKLSGEIPFSIYNLS-SLSLLDFPVNQLQGSLPSDIG-FTLPNLEV 117
L +++ ++ + N+ SGE+P S+ NLS SL LD N G + ++ L+
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 118 LNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGE 176
L NN FTG IP ++SN S L+ L + N SG +P SL +L KL+ + LN L GE
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGE 457
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236
L+ LE + + N+ G +P + N T L ++ NN+L G IP +G
Sbjct: 458 -----IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIG 511
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
L NL +L L +N F+G I +GD + L L L N F G IP+++ +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----A 567
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNN--NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354
N + G + + N G ++ LS+ +++ G
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR-NPCNITSRVYGGHTSP 626
Query: 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLD 414
F ++ LD+S N LSG IP +GS L L + N G+IP LRG+ LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 415 LSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISE 474
LS N L GRIP+ L ++LS+N+ G +P G F N LCG
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG---- 742
Query: 475 LHLSTCSIKESKQS 488
L C +
Sbjct: 743 YPLPRCDPSNADGY 756
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 324 bits (832), Expect = e-103
Identities = 139/484 (28%), Positives = 214/484 (44%), Gaps = 27/484 (5%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPS--SFGNLSSLEFLSAAVNQFVGQIP- 57
+ + G V G + L +L + N+LSG + + S G+ S L+FL+ + N
Sbjct: 86 NSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 58 ETLSELKRMRSIGFGANKLSGEIPFSIY---NLSSLSLLDFPVNQLQGSLPSDIGFTLPN 114
+L + + AN +SG L L N++ G + N
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVN 201
Query: 115 LEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLG 173
LE L+ +N F+ IP + + S L L I N SG ++ +L+ ++ S N
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF- 259
Query: 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPS 233
G + L+ + ++ N F G +P+ + L + N +G +P
Sbjct: 260 VGP-------IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 234 GLGNLVNLELLDLGDNQFTGRI-LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL-LFT 291
G+ LE L L N F+G + + ++ ++ L+ L L N+F GE+P S+ NL+ L T
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 292 LSFEGNRLEGSIPSSLGKC--KNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L N G I +L + L L L NN TG IP + S L L LS N L+
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV-SLHLSFNYLS 431
Query: 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409
G +PS+ G L L L + N L GEIP L LE L+++ N G IPS S+
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK-GVFSNSSAISLDGNDNL 468
+ + LS N L+G IPK+ L L LS+N F G +P + G + + L+ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LF 550
Query: 469 CGGI 472
G I
Sbjct: 551 NGTI 554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = e-101
Identities = 149/490 (30%), Positives = 218/490 (44%), Gaps = 27/490 (5%)
Query: 2 NELVGKVP-GKLGSLSKLRTLAVHFNNLSGEIPSSF---GNLSSLEFLSAAVNQFVGQIP 57
N L L+ L L + N++SG + L+ L+ + N+ G +
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 58 ETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEV 117
+S + + +N S IP + + S+L LD N+L G I T L++
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKL 251
Query: 118 LNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNG 175
LN +NQF GPIP +L L++ +N F+G++P L + S NH G
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YG 308
Query: 176 EKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL 235
+ S LE + +S NNF G LP LK + N+ G +P L
Sbjct: 309 -----AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 236 GNL-VNLELLDLGDNQFTGRILGSIGDLQK--LQRLRLKGNKFLGEIPSSVGNLTLLFTL 292
NL +L LDL N F+G IL ++ K LQ L L+ N F G+IP ++ N + L +L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPL 352
N L G+IPSSLG L L L N L G IP E++ + +L L L N L G +
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE-TLILDFNDLTGEI 482
Query: 353 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQN 412
PS NL + +S N+L+GEIP +G L L ++ N F GNIP+ R +
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 413 LDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK-GVFSNSSAISLDGNDNLCGG 471
LDL+ N +G IP F Q+ +++N G+ + GN G
Sbjct: 543 LDLNTNLFNGTIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598
Query: 472 ISELHLSTCS 481
I L+ S
Sbjct: 599 IRSEQLNRLS 608
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = e-101
Identities = 134/479 (27%), Positives = 197/479 (41%), Gaps = 46/479 (9%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N +P LG S L+ L + N LSG+ + + L+ L+ + NQFVG IP
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
L SL L N+ G +P + L L+
Sbjct: 267 -------------------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLGNGEKD 178
N F G +P + S L L + N FSG++P +L + L+ + S N +G
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SG--- 357
Query: 179 DLEFVSSLVNAS-RLEMMEISINNFGGMLPESVGNLS-TRLKRFTVGNNQLFGNIPSGLG 236
E SL N S L +++S NNF G + ++ L+ + NN G IP L
Sbjct: 358 --ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
N L L L N +G I S+G L KL+ L+L N GEIP + + L TL +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF 356
N L G IPS L C NL + LSNN LTG IP + L +L+I L LS N +G +P+
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI-LKLSNNSFSGNIPAEL 534
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
G ++L LD++ N +G IP ++ + NF G + + +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 417 RN--NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK-GVFSNSSAISLDGNDNLCGGI 472
N G + N++S + G + + + N L G I
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYI 648
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = 5e-98
Identities = 133/470 (28%), Positives = 208/470 (44%), Gaps = 23/470 (4%)
Query: 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFG 72
++ + + N + SS +L+ LE L + + G + + S+
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108
Query: 73 ANKLSGEIP--FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIP 130
N LSG + S+ + S L L+ N L G L +LEVL+ N +G
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168
Query: 131 ASISNASNLMRLT---IQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV 187
+ L I N SG V + L+ + S N+ + + L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNF-STG------IPFLG 220
Query: 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLG 247
+ S L+ ++IS N G ++ T LK + +NQ G IP L +L+ L L
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFVGPIPP--LPLKSLQYLSLA 277
Query: 248 DNQFTGRILGSI-GDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP-S 305
+N+FTG I + G L L L GN F G +P G+ +LL +L+ N G +P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG--ILKNLG 363
+L K + L +LDLS N +G +P + LS+ + LDLS N +GP+ N L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 364 VLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423
L + N +G+IP +L +C L L ++ N+ G IPSS SL +++L L N L G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 424 IPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLD-GNDNLCGGI 472
IP+ L+ L L N GE+P G+ + ++ + N+ L G I
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEI 506
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 2e-64
Identities = 99/372 (26%), Positives = 149/372 (40%), Gaps = 61/372 (16%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L G +P LGSLSKLR L + N L GEIP + +LE L N G+IP L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
S + I N+L+GEIP I L +L++L N G++P+++G +L L+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDL 545
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDD 179
N F G IPA++ S + N +GK ++N + + N
Sbjct: 546 NTNLFNGTIPAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNL-------- 593
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLV 239
+ G L L
Sbjct: 594 ---------------------------------------------LEFQGIRSEQLNRLS 608
Query: 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRL 299
++ + G + + + L + N G IP +G++ LF L+ N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 300 EGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGIL 359
GSIP +G + L +LDLS+N L G IP + L+ L+ +DLS N L+GP+P G
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDLSNNNLSGPIPEM-GQF 726
Query: 360 KNLGVLDVSENK 371
+ N
Sbjct: 727 ETFPPAKFLNNP 738
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 278 bits (713), Expect = 1e-90
Identities = 83/309 (26%), Positives = 131/309 (42%), Gaps = 14/309 (4%)
Query: 180 LEFVSSLVNASRL----EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFG--NIPS 233
L+ L N + L + + G+L ++ + R+ + L IPS
Sbjct: 12 LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70
Query: 234 GLGNLVNLELLDLGD-NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292
L NL L L +G N G I +I L +L L + G IP + + L TL
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPL 352
F N L G++P S+ NL+ + N ++G IP S L + +S+N+L G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 353 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQN 412
P F L NL +D+S N L G+ GS +++ + N ++ + +
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248
Query: 413 LDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGI 472
LDL N + G +P+ FL +LN+S N+ GE+P G + N LCG
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS- 307
Query: 473 SELHLSTCS 481
L C+
Sbjct: 308 ---PLPACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 6e-58
Identities = 81/330 (24%), Positives = 123/330 (37%), Gaps = 60/330 (18%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGE--IPSSFGNLSSLEFLS-AAVNQFVGQIPE 58
+G + ++ L + NL IPSS NL L FL +N VG IP
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 59 TLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118
+++L ++ + +SG IP + + +L LDF N L G+LP I +LPNL +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGI 154
Query: 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKD 178
F N+ +G IP S + S L
Sbjct: 155 TFDGNRISGAIPDSYGSFSKL--------------------------------------- 175
Query: 179 DLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNL 238
M IS N G +P + NL+ L + N L G+ G+
Sbjct: 176 -------------FTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSD 220
Query: 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
N + + L N + G +G + L L L+ N+ G +P + L L +L+ N
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIP 328
L G IP G + + +NN P
Sbjct: 280 LCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-45
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 35/250 (14%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N LVG +P + L++L L + N+SG IP + +L L + N G +P ++
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLS-LLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
S L + I F N++SG IP S + S L + N+L G +P NL ++
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVD 203
Query: 120 FGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDD 179
N G + N ++ + KN + + +
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-------------------- 243
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLV 239
L +++ N G LP+ + L L V N L G IP G GNL
Sbjct: 244 ----------KNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-GNLQ 291
Query: 240 NLELLDLGDN 249
++ +N
Sbjct: 292 RFDVSAYANN 301
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 7e-66
Identities = 96/465 (20%), Positives = 164/465 (35%), Gaps = 23/465 (4%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N+L S+L +L V FN +S P L L+ L+ N+ +T
Sbjct: 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+ + + +N + +L LD N L S L NL+ L
Sbjct: 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLL 152
Query: 121 GNNQFTGPIPASISNASN--LMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEK 177
NN+ + +N L +L + N P + +L + + LG
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP--- 209
Query: 178 DDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLS-TRLKRFTVGNNQLFGNIPSGLG 236
E + + + + + +S + + L T L + N L
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI---------PSSVGNLT 287
L LE L N S+ L ++ L LK + I S L
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329
Query: 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI--GLSSLSI-YLDLS 344
L L+ E N + G + NL L LSN+ + T L+ + L+L+
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389
Query: 345 KNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLVMNGNFFQGNIPSS 403
KN+++ F L +L VLD+ N++ E+ + ++ ++ N + +S
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 404 FSSLRGIQNLDLSRNNLSG--RIPKYFENFFFLQNLNLSSNHFEG 446
F+ + +Q L L R L P F+ L L+LS+N+
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 2e-64
Identities = 94/466 (20%), Positives = 171/466 (36%), Gaps = 40/466 (8%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSE---LKRMRS 68
+ + S L+ L + N + P F + L L Q + E L +R+
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226
Query: 69 IGFGANKLSGEIPFSIYNL--SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+ ++LS + L ++L++LD N L + LP LE N
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQ 285
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVP----------SLENLYKLQRVSFSLNHLGNGE 176
S+ N+ L ++++ + S + L L+ ++ N + +
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345
Query: 177 KDDLEFVSSLV----NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIP 232
+ + +L + S + ++ F + + L + N++
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-------HSPLHILNLTKNKISKIES 398
Query: 233 SGLGNLVNLELLDLGDNQFTGRILGS-IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291
L +LE+LDLG N+ + G L+ + + L NK+L +S + L
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Query: 292 LSFEGNRLEG--SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L L+ S PS +NL +LDLSNNN+ + GL L LDL N L
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLA 517
Query: 350 --------GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401
G L +L +L++ N L+ + + N
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577
Query: 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSNHFEG 446
S F++ +++L+L +N ++ K F F L L++ N F+
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 5e-64
Identities = 88/465 (18%), Positives = 153/465 (32%), Gaps = 29/465 (6%)
Query: 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFG 72
+ + L + N L ++F S L L N PE +L ++ +
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 73 ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPAS 132
N+LS + ++L+ L N +Q + NL L+ +N + +
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGT 140
Query: 133 ISNASNLMRLTIQKNGFSG---KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
NL L + N + + L+++ S N +
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG------CFHAI 194
Query: 190 SRLEMMEISINNFGGMLPESVGNLS--TRLKRFTVGNNQLFGNIPSGLGNL--VNLELLD 245
RL + ++ G L E + T ++ ++ N+QL + L NL +LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254
Query: 246 LGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLL---------FTLSFEG 296
L N S L +L+ L+ N S+ L + S
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN- 355
L S K L L++ +N++ G GL +L YL LS + + +N
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSLSNSFTSLRTLTNE 373
Query: 356 ---FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQ 411
L +L++++NK+S ++ LE L + N + + L I
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 412 NLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
+ LS N F LQ L L + F
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 64/278 (23%), Positives = 101/278 (36%), Gaps = 11/278 (3%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+L T + + +NQL + L LD+G N + L L+ L L+
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV 331
N+ + T L L N ++ + K KNLI LDLS+N L+ T
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSNFGILKN--LGVLDVSENKLSGEIPNSLGSCVRLEQL 389
+ L +L L LS N++ I N L L++S N++ P + RL L
Sbjct: 142 VQLENLQ-ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 390 VMNGNFFQGNIPSSFS---SLRGIQNLDLSRNNLSGRIPKYFENFFF--LQNLNLSSNHF 444
+N ++ + I+NL LS + LS F + L L+LS N+
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 445 EGEVPIKGVFSNSSAI-SLDGNDNLCGGISELHLSTCS 481
F+ + N + L
Sbjct: 261 NV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 9e-32
Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 6/213 (2%)
Query: 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
V+ E+ D + T ++ + + L L N+ ++ + L +L N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI 358
+ P K L +L+L +N L+ ++L+ L L N + + F
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT-ELHLMSNSIQKIKNNPFVK 119
Query: 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSL--RGIQNLDLS 416
KNL LD+S N LS + L++L+++ N Q ++ L+LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449
N + P F L L L++ +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 9/157 (5%)
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371
+ + D S+ LT +P ++ ++++ L+L+ NQL +NF L LDV N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL--PTNIT-VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431
+S P L+ L + N +F+ + L L N++ F
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 432 FFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGN 465
L L+LS N G + L N
Sbjct: 121 KNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNN 155
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-63
Identities = 65/496 (13%), Positives = 134/496 (27%), Gaps = 53/496 (10%)
Query: 1 FNELVGKVPGKLG--SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE 58
S L ++ + I S + N + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200
Query: 59 TLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118
+ L ++R G + E + + Q + L +L +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWD-NLKDLTDV 254
Query: 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSG---------KVPSLENLYKLQRVSFSL 169
N +P + + + + N + K+Q +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314
Query: 170 NHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFG 229
N+L + +SL +L M+E N G + G+ +L + NQ+
Sbjct: 315 NNLKTFPVE-----TSLQKMKKLGMLECLYNQLEG-KLPAFGSE-IKLASLNLAYNQITE 367
Query: 230 NIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQKLQRLRLKGNKF-------LGEIPS 281
+ G +E L N+ + + + + N+ +
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427
Query: 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG-------TIPTEVIGL 334
+ + +++ N++ L ++L N LT
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487
Query: 335 SSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN- 392
L+ +DL N+L L L +D+S N S P + L+ +
Sbjct: 488 YLLT-SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545
Query: 393 -----GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447
GN P + + L + N++ K N + L++ N
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNIS- 601
Query: 448 VPIKGVFSNSSAISLD 463
+ + V A
Sbjct: 602 IDLSYVCPYIEAGMYM 617
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 3e-60
Identities = 68/459 (14%), Positives = 137/459 (29%), Gaps = 57/459 (12%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
V + L+KLR + + E + E+ Q LK +
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLT 252
Query: 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-------LPNLEVLNF 120
+ ++P + L + L++ N+ + ++++
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 121 GNNQFT-GPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDD 179
G N P+ S+ L L N GK+P+ + KL ++ + N +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA-- 370
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL-------FGNIP 232
+ ++E + + N + + + N++ F +
Sbjct: 371 ----NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 233 SGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKF-------LGEIPSSVGN 285
+N+ ++L +NQ + L + L GN L + + N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 286 LTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLS 344
LL ++ N+L L+ +DLS N+ + PT+ + S+L +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK-GFGIR 544
Query: 345 KNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF 404
D N+ E P + C L QL + N +
Sbjct: 545 NQ------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586
Query: 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNH 443
++ LD+ N Y + L +
Sbjct: 587 PNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-59
Identities = 66/457 (14%), Positives = 144/457 (31%), Gaps = 45/457 (9%)
Query: 20 TLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG- 78
+ + S + + LS G++P+ + +L + + G++
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 79 ---EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF-TLPNLEVLNFGNNQFTGPIPASIS 134
P I S Q + +L ++ I S
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194
++ N + ++ L KL++ + + E
Sbjct: 181 ITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF-----------VAENICEAWEN 229
Query: 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFT-- 252
NL L V N +P+ L L ++L+++ N+
Sbjct: 230 ENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288
Query: 253 ------GRILGSIGDLQKLQRLRLKGNKFL-GEIPSSVGNLTLLFTLSFEGNRLEGSIPS 305
+ L +K+Q + + N + +S+ + L L N+LEG +P
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347
Query: 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI--LKNLG 363
+ G L L+L+ N +T + L + N+L +P+ F + +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQV-ENLSFAHNKLKY-IPNIFDAKSVSVMS 405
Query: 364 VLDVSENKLSG-------EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
+D S N++ + + + + + ++ N FS+ + +++L
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465
Query: 417 RNNLSG-------RIPKYFENFFFLQNLNLSSNHFEG 446
N L+ + F+N + L +++L N
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 1e-62
Identities = 102/485 (21%), Positives = 169/485 (34%), Gaps = 41/485 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG-QIPET 59
N + G LS L+ L NL+ G+L +L+ L+ A N ++PE
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 60 LSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL----LDFPVNQLQGSLPSDIGFTLPNL 115
S L + + +NK+ + L + L LD +N + P F L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRL 202
Query: 116 EVLNFGNNQFTGPIPA-SISNASNLMRLTIQKNGFSG----KVPSLENLYKLQRVSFSLN 170
L NN + + I + L + F + L L ++
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL--- 227
L + + + + + + + S + + + N +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQF 319
Query: 228 ----------------FGNIPSGLGNLVNLELLDLGDNQ--FTGRILGSIGDLQKLQRLR 269
G +L +LE LDL N F G S L+ L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 270 LKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSS-LGKCKNLILLDLSNNNLTGTIP 328
L N + + S+ L L L F+ + L+ S +NLI LD+S+ +
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 329 TEVIGLSSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387
GLSSL L ++ N + F L+NL LD+S+ +L P + S L+
Sbjct: 439 GIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 388 QLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSNHFEG 446
L M+ N F + L +Q LD S N++ + ++F L LNL+ N F
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Query: 447 EVPIK 451
+
Sbjct: 558 TCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 2e-59
Identities = 105/484 (21%), Positives = 162/484 (33%), Gaps = 44/484 (9%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L S +L+ L + + ++ +LS L L N
Sbjct: 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
S L ++ + L+ F I +L +L L+ N +Q + L NLE L+
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 121 GNNQFTGPIPASISNASNL----MRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176
+N+ + + + L + N + P +L +++ N
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGM--LPESVGNLSTRLKRFTVGNNQL------F 228
+ + LE+ + + F L + + L T+ +L
Sbjct: 217 MKT-----CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
Query: 229 GNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKF------------- 275
+I L N+ L + Q L L KF
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329
Query: 276 ------LGEIPSSVGNLTLLFTLSFEGNRL--EGSIPSSLGKCKNLILLDLSNNNLTGTI 327
G S +L L L N L +G S +L LDLS N + T+
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388
Query: 328 PTEVIGLSSLSIYLDLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386
+ +GL L +LD + L S F L+NL LD+S L
Sbjct: 389 SSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 387 EQLVMNGNFFQGNI-PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
E L M GN FQ N P F+ LR + LDLS+ L P F + LQ LN+S N+F
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 446 GEVP 449
Sbjct: 508 SLDT 511
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 4e-55
Identities = 84/448 (18%), Positives = 141/448 (31%), Gaps = 27/448 (6%)
Query: 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK 75
+ L + FN L SF + L+ L + + L + ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASIS 134
+ + LSSL L L IG L L+ LN +N +P S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFS 146
Query: 135 NASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
N +NL L + N L L+++ ++ SL+ N RL
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---FIQPGAFKEIRLH 203
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGN------IPSGLGNLVNLELLDLG 247
+ + N + ++ L+ + + S L L NL + +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 248 DNQ---FTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP 304
+ I+ L + L S L +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPT 321
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN--GPLPSNFGILKNL 362
L K L N + L SL +LDLS+N L+ G + +L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE-----VDLPSLE-FLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSS-FSSLRGIQNLDLSRNNLS 421
LD+S N + + ++ +LE L + + S F SLR + LD+S +
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 422 GRIPKYFENFFFLQNLNLSSNHFEGEVP 449
F L+ L ++ N F+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFL 462
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 66/365 (18%), Positives = 124/365 (33%), Gaps = 24/365 (6%)
Query: 25 FNNLSGEIPSSFGNLSSLEFLS---AAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81
NL S+ L +L A ++ ++ I + + L + S + +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMR 141
FS L+ + L +L+ L F +N+ S + +L
Sbjct: 300 FS--YNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEF 351
Query: 142 LTIQKNGFSGKV---PSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEIS 198
L + +NG S K S L+ + S N + S+ + +LE ++
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLEHLDFQ 404
Query: 199 INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL-G 257
+N M SV L + + L +LE+L + N F L
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 258 SIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLD 317
+L+ L L L + P++ +L+ L L+ N +L +LD
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Query: 318 LSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN--FGILKNLGVLDVSENKLSGE 375
S N++ + E+ S +L+L++N +K+ L V ++
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584
Query: 376 IPNSL 380
P+
Sbjct: 585 TPSDK 589
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 6e-34
Identities = 59/308 (19%), Positives = 99/308 (32%), Gaps = 42/308 (13%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
NL K + N L + L++LDL + G+ L L L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV 331
GN + L+ L L L +G K L L++++N + E
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV----LDVSENKLSGEIPNSLGSCVRLE 387
+ +LDLS N++ ++ +L + + LD+S N ++ P + RL
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203
Query: 388 QLVMNGNFFQGNIPS----------------------------SFSSLRGIQNLDLSRNN 419
+L + NF N+ S+L G+ NL +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 420 LS------GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGIS 473
L+ I F + + +L S E N L+ + G
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFP 320
Query: 474 ELHLSTCS 481
L L +
Sbjct: 321 TLKLKSLK 328
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 8e-57
Identities = 99/493 (20%), Positives = 163/493 (33%), Gaps = 23/493 (4%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
++ S +L TL + N L ++ +L+ L L
Sbjct: 66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEV--L 118
K + S+ G+N +S + L +LDF N + D+ L L
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSL 184
Query: 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP---SLENLYKLQRVSFSLNHLGNG 175
N N G I +++ L + + L +F +
Sbjct: 185 NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 176 EKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL 235
E + + +E + + + F + + + L+ + L +PSGL
Sbjct: 244 SPAVFEGLCEM----SVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHL-SELPSGL 297
Query: 236 GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSF 294
L L+ L L N+F S + L L +KGN E+ + NL L L
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 295 EGNRLEGS--IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG-P 351
+ +E S L +L L+LS N L LDL+ +L
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-LLDLAFTRLKVKD 416
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI---PSSFSSLR 408
S F L L VL++S + L L+ L + GN F +S +L
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476
Query: 409 GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468
++ L LS +LS F + + +++LS N S+ I L+ N
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI--EALSHLKGIYLNLASNH 534
Query: 469 CGGISELHLSTCS 481
I L S
Sbjct: 535 ISIILPSLLPILS 547
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-55
Identities = 95/459 (20%), Positives = 169/459 (36%), Gaps = 24/459 (5%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
+ L + L +L + N++S L+ L N E +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173
Query: 61 SELKRMR--SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF-TLPNLEV 117
S L++ S+ N ++ I ++ + L+F Q + + T+ +L +
Sbjct: 174 SSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232
Query: 118 LNFGNNQFTGPIPASISN--ASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGN 174
F + PA ++ + +QK+ F + LQ + + HL
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291
Query: 175 GEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG 234
E S LV S L+ + +S N F + S N L ++ N + +G
Sbjct: 292 ------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTG 344
Query: 235 -LGNLVNLELLDLGDNQFTGRIL--GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291
L NL NL LDL + + +L LQ L L N+ L + L
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 292 LSFEGNRLEGSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQL-- 348
L RL+ S L +L+LS++ L + GL +L +L+L N
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPK 463
Query: 349 -NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSL 407
N ++ L L +L +S LS ++ S + + ++ N + + S L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 408 RGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446
+GI L+L+ N++S +P + +NL N +
Sbjct: 524 KGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 7e-55
Identities = 92/458 (20%), Positives = 158/458 (34%), Gaps = 19/458 (4%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
+PG L + L FN L ++F L +L FL Q +T R+
Sbjct: 27 IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84
Query: 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
++ AN L ++ +L L F + + LE L G+N +
Sbjct: 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESLYLGSNHISS 143
Query: 128 PIPASISNASNLMRLTIQKNGFSG-KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186
L L Q N + +L + +S +LN D
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-----DIAGIEPGA 198
Query: 187 VNASRLEMMEISINNFGGMLPESVGNLS-TRLKRFTVGNNQLFGNIPSGLGNLVNLEL-- 243
+++ + + ++ + + N + L T + P+ L + +
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258
Query: 244 LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI 303
++L + F + LQ L L L E+PS + L+ L L N+ E
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLC 317
Query: 304 PSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQLN--GPLPSNFGILK 360
S +L L + N + T + L +L LDLS + + L
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR-ELDLSHDDIETSDCCNLQLRNLS 376
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNN 419
+L L++S N+ + C +LE L + + S F +L ++ L+LS +
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 420 LSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK-GVFSN 456
L + F+ LQ+LNL NHF K
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-41
Identities = 88/426 (20%), Positives = 148/426 (34%), Gaps = 23/426 (5%)
Query: 6 GKVPGKLGSLSKLRTLAVHFNNLSGEIPS--SFGNLSSLEFLSAAVNQFVGQIPETLSEL 63
+ + ++L I + SL + P L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 64 KRM--RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
M SI + + + S L LD L LPS + L L+ L
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLS 309
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDD 179
N+F S SN +L L+I+ N ++ + LENL L+ + S + + + +
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNL 238
L+ N S L+ + +S N + E+ +L+ + +L NL
Sbjct: 370 LQLR----NLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNL 424
Query: 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVG---NLTLLFTLSFE 295
L++L+L + L LQ L L+GN F L L L
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355
L + K + +DLS+N LT + + L + YL+L+ N ++ LPS
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPSL 542
Query: 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL 415
IL +++ +N L N LE N + + + ++ + L
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNIY----FLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598
Query: 416 SRNNLS 421
S LS
Sbjct: 599 SDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 9/153 (5%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ N L IP L + + L+ S N L + F L NL LD++ ++
Sbjct: 17 YNCENLGLN-EIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435
++ S RL+ LV+ N ++ S + +++L + +S N L+
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 436 NLNLSSNHFEGEVPIKGVFSNSSA---ISLDGN 465
+L L SNH + + N
Sbjct: 133 SLYLGSNHISS--IKLPKGFPTEKLKVLDFQNN 163
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 5e-51
Identities = 76/466 (16%), Positives = 147/466 (31%), Gaps = 71/466 (15%)
Query: 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIG 70
L + ++ L++ G +P + G L+ L+ LS
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS------------------------ 353
Query: 71 FGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT---- 126
FG + + + + + ++++ L + + +
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413
Query: 127 -GPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSS 185
PI + ++ N + +++ L KLQ + F+ + +
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF-----------TY 462
Query: 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLD 245
A E S NL L + N +P L +L L+ L+
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521
Query: 246 LGDNQFTG---------RILGSIGDLQKLQRLRLKGNKFLGEIPSSV--GNLTLLFTLSF 294
+ N+ R+ K+Q + N L E P+S + L L
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDC 580
Query: 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354
N++ + G L L L N + IP + + L S N+L +P+
Sbjct: 581 VHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPN 636
Query: 355 NFGI--LKNLGVLDVSENKLSGEIPNSLGS-----CVRLEQLVMNGNFFQGNIPSSFSSL 407
F + +G +D S NK+ E N S + + ++ N Q F++
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696
Query: 408 RGIQNLDLSRNNLS-------GRIPKYFENFFFLQNLNLSSNHFEG 446
I + LS N ++ ++N + L ++L N
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 2e-49
Identities = 70/504 (13%), Positives = 142/504 (28%), Gaps = 114/504 (22%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSG-------------------EIPSSFGNLSSLEFLSAA 48
+ + L+KL+ + + + S+ NL L +
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499
Query: 49 VNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
+ Q+P+ L +L ++S+ N+ + + L D
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT--------------RLADDE 544
Query: 109 GFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSF 167
T P +++ G N P AS+ L L N + + KL +
Sbjct: 545 D-TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKL 602
Query: 168 SLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL 227
N + +PE + +++ +N+L
Sbjct: 603 DYNQIEE-------------------------------IPEDFCAFTDQVEGLGFSHNKL 631
Query: 228 FGNIPS--GLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN 285
IP+ ++ + +D N+ + + +
Sbjct: 632 -KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS-------------- 676
Query: 286 LTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT-------GTIPTEVIGLSSLS 338
T++ N ++ + + LSNN +T L+
Sbjct: 677 -----TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 339 IYLDLSKNQLNG-PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL------VM 391
+DL N+L L L +DVS N S P + +L+
Sbjct: 732 -TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451
GN P+ ++ + L + N++ K L L+++ N + +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNI-SIDVT 845
Query: 452 GVFSNSSA----ISLDGNDNLCGG 471
V A + D ++ G
Sbjct: 846 SVCPYIEAGMYVLLYDKTQDIRGC 869
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 2e-48
Identities = 69/437 (15%), Positives = 137/437 (31%), Gaps = 29/437 (6%)
Query: 26 NNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIY 85
++ + + F + ++ + Q L R+ + G +P +I
Sbjct: 286 WRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQ 145
L+ L +L F + S L + + L +
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 146 KNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGM 205
++ + + P ++ + K R+S +GN ++ ++L+++ + + F
Sbjct: 405 QDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY- 462
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKL 265
+V + + N NL +L ++L + ++ + DL +L
Sbjct: 463 DNIAVDWEDANSD-----YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517
Query: 266 QRLRLKGNKF---------LGEIPSSVGNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLIL 315
Q L + N+ + + N LE S SL K L L
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
LD +N + L+ L L NQ+ + L S NKL
Sbjct: 578 LDCVHNKV--RHLEAFGTNVKLT-DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y 633
Query: 376 IPN--SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG-----IQNLDLSRNNLSGRIPKYF 428
IPN + S + + + N + S+ + LS N + + F
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693
Query: 429 ENFFFLQNLNLSSNHFE 445
+ + LS+N
Sbjct: 694 ATGSPISTIILSNNLMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 4e-47
Identities = 76/487 (15%), Positives = 160/487 (32%), Gaps = 75/487 (15%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEF-------LSAAVNQFVG 54
G+VP +G L++L+ L+ ++ + + + + +
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392
Query: 55 QIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPN 114
+ L+ ++ ++ S +L + + N++ + I L
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRIT-FISKAIQ-RLTK 449
Query: 115 LEVLNFGNNQFTGP-------------------IPASISNASNLMRLTIQKNGFSGKVP- 154
L+++ F N+ FT S SN +L + + ++P
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509
Query: 155 SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLS 214
L +L +LQ ++ + N + + ++ L +
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTR---------------------LADDEDTG- 547
Query: 215 TRLKRFTVGNNQLFG-NIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGN 273
+++ F +G N L + L +V L LLD N+ L + G KL L+L N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYN 605
Query: 274 KFLGEIPSSVG-NLTLLFTLSFEGNRLEGSIPS--SLGKCKNLILLDLSNNNLTGTIPTE 330
+ + EIP + L F N+L+ IP+ + + +D S N +
Sbjct: 606 Q-IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 331 VIGLSSLS----IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-------GEIPNS 379
+ + LS N++ F + + +S N ++ +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 380 LGSCVRLEQLVMNGNFFQGNIPSS--FSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNL 437
+ L + + N + ++L + N+D+S N S P N L+
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781
Query: 438 NLSSNHF 444
+
Sbjct: 782 GIRHQRD 788
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 37/289 (12%), Positives = 96/289 (33%), Gaps = 39/289 (13%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
N + + + + +N + + + + + + ++ L L G G +P ++
Sbjct: 285 NWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343
Query: 284 GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDL 343
G LT L LSF + S + + + + + + DL
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403
Query: 344 SKNQLNG----------------------------PLPSNFGILKNLGVLDVSENKLSGE 375
++ +N + L L ++ + + + +
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435
V E + N S+S+L+ + +++L ++P + + LQ
Sbjct: 464 NI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 436 NLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCSIKE 484
+LN++ N +K ++ L +++ I ++ +++E
Sbjct: 519 SLNIACNRGISAAQLKADWTR-----LADDEDTGPKIQIFYMGYNNLEE 562
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 93/462 (20%), Positives = 158/462 (34%), Gaps = 35/462 (7%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSG-EIPSSFGNLSSLEFLSAAVNQFVGQIPET 59
+L +G L L+ L V N + ++P+ F NL++L + + N
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 60 LSELKRMR----SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNL 115
L L+ S+ N + I + L L N ++ L L
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 116 EVLNFGNNQFTGPIPASISNASNLMRLTI---------QKNGFSGKVPSLENLYKLQRVS 166
V +F I S + L N FS + L + +S
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 167 FSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQ 226
+ + +++ + + + + I + L K T+ N+
Sbjct: 292 LAGVSI--------KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL----KSLTLTMNK 339
Query: 227 LFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ--KLQRLRLKGNKFLGEIPSSVG 284
+I L +L LDL N + S DL L+ L L N + ++
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFM 396
Query: 285 NLTLLFTLSFEGNRLEGSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDL 343
L L L F+ + L+ S+ + L+ LD+S N +GL+SL+ L +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-TLKM 455
Query: 344 SKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS 402
+ N SN F NL LD+S+ +L + RL+ L M+ N S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 403 SFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
++ L + LD S N + L NL++N
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-48
Identities = 88/455 (19%), Positives = 151/455 (33%), Gaps = 17/455 (3%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L + S+L+ L + + ++ L L L N P +
Sbjct: 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
S L + ++ KL+ F I L +L L+ N + L NL ++
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160
Query: 121 GNNQFTGPIPASISNASNL----MRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176
N + + L + N KL ++ N +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESV--GNLSTRLKRFTVGNNQLFGNIPSG 234
+ ++ RL + E + S+ G + F + F +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294
L N+ + L L + K Q L + + L + P+ +L L +L+
Sbjct: 281 FHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQ-LKQFPTL--DLPFLKSLTL 335
Query: 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI-YLDLSKNQLNGPLP 353
N+ SI +L LDLS N L+ + L + S+ +LDLS N +
Sbjct: 336 TMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392
Query: 354 SNFGILKNLGVLDVSENKLSGEIPNS-LGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQN 412
+NF L+ L LD + L S S +L L ++ + + F L +
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Query: 413 LDLSRNNLSGRIPKY-FENFFFLQNLNLSSNHFEG 446
L ++ N+ F N L L+LS E
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 5e-44
Identities = 98/467 (20%), Positives = 171/467 (36%), Gaps = 32/467 (6%)
Query: 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK 75
S + + + FN L SF N S L++L + + + L + ++ N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASIS 134
+ P S L+SL L +L SL S L L+ LN +N +PA S
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 135 NASNLMRLTIQKNGFSG-KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV-NASRL 192
N +NL+ + + N V L+ L + +V+ SL+ N ++F+ +L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN----PIDFIQDQAFQGIKL 206
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI------PSGLGNLVNL--ELL 244
+ + N + ++ L + + PS + L ++ +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 245 DLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP 304
L + L + + L G + V +LS +L+
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPT 324
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK--NL 362
L L L L+ N +I + + L SLS YLDLS+N L+ ++ L +L
Sbjct: 325 LDL---PFLKSLTLTMNKG--SISFKKVALPSLS-YLDLSRNALSFSGCCSYSDLGTNSL 378
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLS 421
LD+S N + + L+ L + + S+F SL + LD+S N
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGN 465
F L L ++ N F+ VF+N++ + L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKC 483
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 51/259 (19%), Positives = 87/259 (33%), Gaps = 14/259 (5%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
++ + K + N L N L+ LDL + + L L L L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG-TIPTE 330
GN P S LT L L +L +G+ L L++++N + +P
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLG----VLDVSENKLSGEIPNSLGSCVRL 386
L++L ++DLS N + ++ L+ LD+S N + I + ++L
Sbjct: 149 FSNLTNLV-HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKL 206
Query: 387 EQLVMNGNFFQGNIPS-SFSSLRGIQNLDLSRNNLSGRI------PKYFENFFFLQNLNL 439
+L + GNF NI +L G+ L P E +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 440 SSNHFEGEVPIKGVFSNSS 458
+ F +
Sbjct: 267 RLTYTNDFSDDIVKFHCLA 285
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 71/321 (22%), Positives = 116/321 (36%), Gaps = 19/321 (5%)
Query: 9 PGKLGSLSKLRTLAVHF--NNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM 66
P + L + N + F L+++ +S A + E + + +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKW 309
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+S+ +L + P +L L L +N+ S LP+L L+ N +
Sbjct: 310 QSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALS 363
Query: 127 GPIPASISN--ASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVS 184
S S+ ++L L + NG + L +LQ + F + L + S
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL-----KRVTEFS 418
Query: 185 SLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLEL 243
+ ++ +L ++IS N L T L + N N S N NL
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 244 LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI 303
LDL Q G L +LQ L + N L S L L TL NR+E S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 304 PSSLGKCKNLILLDLSNNNLT 324
K+L +L+NN++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 3e-20
Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 22/200 (11%)
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
GS+ + N+ + L+ +P + S + +DLS N L +F
Sbjct: 2 GSLNPCIEVVPNITY-QCMDQKLS-KVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFS 56
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L LD+S ++ + L L++ GN Q P SFS L ++NL L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGND----------- 466
+ L+ LN++ N + FSN + + L N
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Query: 467 --NLCGGISELHLSTCSIKE 484
L +S I
Sbjct: 176 LRENPQVNLSLDMSLNPIDF 195
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-41
Identities = 93/458 (20%), Positives = 158/458 (34%), Gaps = 26/458 (5%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF-VGQIPET 59
N + G LS L+ L NL+ G+L +L+ L+ A N ++PE
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 60 LSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL----LDFPVNQLQGSLPSDIGFTLPNL 115
S L + + +NK+ + L + L LD +N + + F L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA-FKEIRL 202
Query: 116 EVLNFGNNQFTGPIPA-SISNASNLMRLTIQKNGFSG----KVPSLENLYKLQRVSFSLN 170
L NN + + I + L + F + L L ++
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGN 230
L + + + + + + + S L+ Q
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK--FLGEIPSSVGNLTL 288
L +L+ L N+ S DL L+ L L N F G S T
Sbjct: 323 ------KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 289 LFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV-IGLSSLSIYLDLSKNQ 347
L L N + ++ S+ + L LD ++NL V + L +L IYLD+S
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTH 432
Query: 348 LNGPLPSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLVMNGNFFQGNIPSSFSS 406
F L +L VL ++ N P+ L L ++ + P++F+S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 407 LRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
L +Q L+++ N L F+ LQ + L +N +
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 91/464 (19%), Positives = 151/464 (32%), Gaps = 42/464 (9%)
Query: 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK 75
+ L + FN L SF + L+ L + + L + ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT-GPIPASIS 134
+ + LSSL L L SL + L L+ LN +N +P S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 135 NASNLMRLTIQKNGFSG-KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNAS-RL 192
N +NL L + N L L+++ ++ SL+ N + F+ RL
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN----PMNFIQPGAFKEIRL 202
Query: 193 EMMEISINNFGGMLPESVGNLSTRLK------RFTVGNNQLFGNIPSGLGNLVNLELLDL 246
+ + N + ++ L+ L S L L NL + +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 247 ---GDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVG--NLTLLFTLSFEGNRLEG 301
+ + I+ L + L + + L ++ + +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 302 SIPSSL----------------GKCKNLILLDLSNNNLT--GTIPTEVIGLSSLSIYLDL 343
SL +L LDLS N L+ G G +SL YLDL
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK-YLDL 380
Query: 344 SKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS-LGSCVRLEQLVMNGNFFQGNIPS 402
S N + + SNF L+ L LD + L S S L L ++ +
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 403 SFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFLQNLNLSSNHFE 445
F+ L ++ L ++ N+ F L L+LS E
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 6e-24
Identities = 73/400 (18%), Positives = 129/400 (32%), Gaps = 31/400 (7%)
Query: 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVN---QFVGQIPETLSEL 63
K+P +L+ L L + N + + L + L+ +++ + I +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 64 KRMRSIGFGANKLSGEIP-FSIYNLSSLSLLDFPVNQLQG-----SLPSDIGFTLPNLEV 117
R+ + N S + I L+ L + + + + L NL +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 118 LNF---GNNQFTGPIPASISNASNLMRLTIQKNGFSG--KVPSLENLYKLQRVSFSLNHL 172
F + + I + +N+ ++ L+ V+
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319
Query: 173 GNGEKDDLE----------FVSSLVNASRLEMMEISIN--NFGGMLPESVGNLSTRLKRF 220
+ L+ S V+ LE +++S N +F G +S T LK
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYL 378
Query: 221 TVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI-LGSIGDLQKLQRLRLKGNKFLGEI 279
+ N + + S L LE LD + L+ L L +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 280 PSSVGNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS 338
L+ L L GN + + + +NL LDLS L PT LSSL
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL- 496
Query: 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378
L+++ NQL F L +L + + N P
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 9e-23
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 11/241 (4%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
NL K + N L + L++LDL + G+ L L L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT-GTIPTE 330
GN + L+ L L L +G K L L++++N + +P
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV----LDVSENKLSGEIPNSLGSCVRL 386
L++L +LDLS N++ ++ +L + + LD+S N ++ I +RL
Sbjct: 145 FSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202
Query: 387 EQLVMNGNFFQGNIPS-SFSSLRG--IQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSN 442
+L + NF N+ L G + L L G + K+ ++ L NL +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 443 H 443
Sbjct: 263 R 263
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 63/337 (18%), Positives = 117/337 (34%), Gaps = 27/337 (8%)
Query: 3 ELVGKVPGKLGSLSKLRTLAVHF---NNLSGEIPSSFGNLSSLEFLS---AAVNQFVGQI 56
++ L L R + F NL S+ L +L A ++ ++ I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274
Query: 57 PETLSELKRMRSIGFGANKLSGEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNL 115
+ + L + S + + FS + L L++ Q L +L
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-------LKLKSL 327
Query: 116 EVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGK---VPSLENLYKLQRVSFSLNHL 172
+ L F +N+ S + +L L + +NG S K S L+ + S N +
Sbjct: 328 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 173 GNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIP 232
+ S+ + +LE ++ +N M SV L + +
Sbjct: 386 -------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 233 SGLGNLVNLELLDLGDNQFTGRIL-GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291
L +LE+L + N F L +L+ L L L + P++ +L+ L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP 328
L+ N+L+ + +L + L N + P
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 93/443 (20%), Positives = 168/443 (37%), Gaps = 42/443 (9%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ L+ L + N L+ P NL+ L + NQ P L+ L + +
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
N+++ P NL++L+ L+ N + S + L +L+ L+FGN
Sbjct: 120 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALS-GLTSLQQLSFGNQVTD---LK 171
Query: 132 SISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
++N + L RL I N S + L L L+ + + N + D+ + L N
Sbjct: 172 PLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQI-----SDITPLGILTN--- 222
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
L+ + ++ N ++ +L T L + NNQ+ P L L L L LG NQ
Sbjct: 223 LDELSLNGNQLKD--IGTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
+ + + L L L L N+ E S + NL L L+ N + P +
Sbjct: 278 SN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLT 331
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371
L L NN ++ + + L++++ +L NQ++ + L + L +++
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNIN-WLSAGHNQISDL--TPLANLTRITQLGLNDQA 386
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431
+ N + + P++ S D++ N S + F
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSY-TNEVSYTF 443
Query: 432 FFLQNLNLSSNHFEGEV--PIKG 452
+ + F G V P+K
Sbjct: 444 SQPVTIGKGTTTFSGTVTQPLKA 466
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 3e-39
Identities = 111/465 (23%), Positives = 174/465 (37%), Gaps = 44/465 (9%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+L++ + N++ + +L + L A + + + L + I F
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
N+L+ P NL+ L + NQ+ + + L NL L NNQ T P
Sbjct: 76 SNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLA-NLTNLTGLTLFNNQITDIDP- 129
Query: 132 SISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
+ N +NL RL + N S + +L L LQ++SF + L N +
Sbjct: 130 -LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTD---------LKPLANLTT 178
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
LE ++IS N + L T L+ NNQ+ + + LG L NL+ L L NQ
Sbjct: 179 LERLDISSNKVSD--ISVLAKL-TNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL 233
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
+G++ L L L L N+ P + LT L L N++ P L
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371
L L+L+ N L P L +L+ YL L N ++ S L L L NK
Sbjct: 288 ALTNLELNENQLEDISPIS--NLKNLT-YLTLYFNNISDI--SPVSSLTKLQRLFFYNNK 342
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431
+S +SL + + L N P ++L I L L+ + Y N
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN- 397
Query: 432 FFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELH 476
+ N N + + S D NL +E+
Sbjct: 398 --VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 3e-22
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 37/288 (12%)
Query: 183 VSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLE 242
+ + + + N + ++ +L ++ + G+ L NL
Sbjct: 17 IFTDTALAEKMKTVLGKTNVTDTVSQT--DL-DQVTTLQADRLGI--KSIDGVEYLNNLT 71
Query: 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302
++ +NQ T + + +L KL + + N+ P + NLT L L+ N++
Sbjct: 72 QINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 127
Query: 303 IPSSLGKCKNLILLDLSNNNLTGTIP----------------TEVIGLSSLS--IYLDLS 344
P L NL L+LS+N ++ T++ L++L+ LD+S
Sbjct: 128 DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185
Query: 345 KNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF 404
N+++ S L NL L + N++S P LG L++L +NGN + +
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTL 239
Query: 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452
+SL + +LDL+ N +S P L L L +N P+ G
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 285
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 18/210 (8%)
Query: 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302
D + + L + + L + +L + TL + +
Sbjct: 6 ATITQDTPINQ--IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--K 59
Query: 303 IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362
+ NL ++ SNN LT P + L+ L + + ++ NQ+ + L NL
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKL-VDILMNNNQIAD--ITPLANLTNL 114
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422
L + N+++ P L + L +L ++ N S+ S L +Q L N ++
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169
Query: 423 RIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452
P N L+ L++SSN +
Sbjct: 170 LKP--LANLTTLERLDISSNKVSDISVLAK 197
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 3e-38
Identities = 81/383 (21%), Positives = 148/383 (38%), Gaps = 38/383 (9%)
Query: 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVN 98
++L L A +NQ ++L ++ + L S++ L
Sbjct: 2 AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGE 54
Query: 99 QLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLEN 158
++ I + L NLE LN NQ T P +SN L L I N + + +L+N
Sbjct: 55 KVAS--IQGIEY-LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQN 108
Query: 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLK 218
L L+ + + +++ D+ +++L + + + N+ + N+ T L
Sbjct: 109 LTNLRELYLNEDNI-----SDISPLANLTK---MYSLNLGANHNLS-DLSPLSNM-TGLN 158
Query: 219 RFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278
TV +++ + + NL +L L L NQ + + L L N+
Sbjct: 159 YLTVTESKV--KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDI 214
Query: 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS 338
P V N+T L +L N++ P L L L++ N ++ V L+ L
Sbjct: 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLK 268
Query: 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398
L++ NQ++ S L L L ++ N+L E +G L L ++ N
Sbjct: 269 -MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325
Query: 399 NIPSSFSSLRGIQNLDLSRNNLS 421
P +SL + + D + +
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 31/337 (9%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
L + L V ++ L++LE+L+ NQ P LS L ++ ++
Sbjct: 40 QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYI 95
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
G NK++ NL++L L + + P L + LN G N +
Sbjct: 96 GTNKITDISALQ--NLTNLRELYLNEDNISDISPLA---NLTKMYSLNLGANHNLS-DLS 149
Query: 132 SISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
+SN + L LT+ ++ V + NL L +S + N + + +S L + +
Sbjct: 150 PLSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIED--------ISPLASLTS 200
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
L +N + V N+ TRL +GNN++ S L NL L L++G NQ
Sbjct: 201 LHYFTAYVNQITDI--TPVANM-TRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQI 255
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
+ + ++ DL KL+ L + N+ S + NL+ L +L N+L +G
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQL 348
NL L LS N++T P LS + D + +
Sbjct: 312 NLTTLFLSQNHITDIRPLA--SLSKMD-SADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 6e-32
Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 28/313 (8%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ L+ L L ++ N ++ P NL L L N+ L L +R +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYL 117
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
+ +S P + NL+ + L+ N S S + + L L ++ P
Sbjct: 118 NEDNISDISPLA--NLTKMYSLNLGANHNL-SDLSPLS-NMTGLNYLTVTESKVKDVTP- 172
Query: 132 SISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
I+N ++L L++ N + L +L L + +N + + ++ + N +R
Sbjct: 173 -IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITD--------ITPVANMTR 222
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
L ++I N + + NL ++L +G NQ+ + + + +L L++L++G NQ
Sbjct: 223 LNSLKIGNNKITDL--SPLANL-SQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI 277
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
+ + + +L +L L L N+ E +G LT L TL N + P L
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333
Query: 312 NLILLDLSNNNLT 324
+ D +N +
Sbjct: 334 KMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 60/366 (16%), Positives = 121/366 (33%), Gaps = 82/366 (22%)
Query: 87 LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQK 146
++L+ L P+NQ+ L T + ++ +L +
Sbjct: 2 AATLATLPAPINQIFPDA------DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG 53
Query: 147 NGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGML 206
+ + +E L L+ ++ + N + I+ +
Sbjct: 54 EKVA-SIQGIEYLTNLEYLNLNGNQIT------------------------DISPLSNL- 87
Query: 207 PESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266
+L +G N++ S L NL NL L L ++ + + + +L K+
Sbjct: 88 --------VKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135
Query: 267 RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGT 326
L L N S + N+T L L+ ++++ P + +L L L+ N +
Sbjct: 136 SLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192
Query: 327 IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386
P + L+SL Y NQ+ + + L L + NK++
Sbjct: 193 SP--LASLTSLH-YFTAYVNQITDI--TPVANMTRLNSLKIGNNKITD------------ 235
Query: 387 EQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446
S ++L + L++ N +S ++ L+ LN+ SN
Sbjct: 236 --------------LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279
Query: 447 EVPIKG 452
+
Sbjct: 280 ISVLNN 285
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-37
Identities = 60/325 (18%), Positives = 115/325 (35%), Gaps = 25/325 (7%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
E L F + P +S + + + + N R +L
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI 231
+ +D ++ LE+ + + P+ L + L+ T+ L +
Sbjct: 71 TADLLED-----ATQPGRVALELRSVPLPQ----FPDQAFRL-SHLQHMTIDAAGL-MEL 119
Query: 232 PSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL--- 288
P + LE L L N + SI L +L+ L ++ L E+P + +
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 289 ------LFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342
L +L E + S+P+S+ +NL L + N+ L+ + + L L LD
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EELD 235
Query: 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS 402
L P FG L L + + +P + +LE+L + G +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Query: 403 SFSSLRGIQNLDLSRNNLSGRIPKY 427
+ L + + +L ++ ++
Sbjct: 296 LIAQLPANCIILVP-PHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-34
Identities = 61/349 (17%), Positives = 117/349 (33%), Gaps = 33/349 (9%)
Query: 35 SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLD 94
+ S E L + + + LS+ +R + + N ++ +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62
Query: 95 FPVNQLQGSLPSDIGF-TLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKV 153
L+ + + T P L + P S+L +TI G
Sbjct: 63 RTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMELP 120
Query: 154 PSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNL 213
+++ L+ ++ + N L +S+ + +RL + I LPE + +
Sbjct: 121 DTMQQFAGLETLTLARNPLR-------ALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 214 STRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGN 273
LVNL+ L L + SI +LQ L+ L+++ +
Sbjct: 174 D----------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 274 KFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIG 333
L + ++ +L L L G + P G L L L + + T+P ++
Sbjct: 217 P-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275
Query: 334 LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 382
L+ L LDL LPS L ++ V + + + +
Sbjct: 276 LTQLE-KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 5e-33
Identities = 48/279 (17%), Positives = 89/279 (31%), Gaps = 21/279 (7%)
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNL-- 238
+ L R + + + S + T L L +
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRAL-KATADLLEDATQ 80
Query: 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
L+L + L LQ + + L E+P ++ L TL+ N
Sbjct: 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP 138
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI--------YLDLSKNQLNG 350
L ++P+S+ L L + +P + + L L +
Sbjct: 139 LR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197
Query: 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGI 410
LP++ L+NL L + + LS + ++ +LE+L + G N P F +
Sbjct: 198 -LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 411 QNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449
+ L L + +P L+ L+L +P
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 53/321 (16%), Positives = 93/321 (28%), Gaps = 22/321 (6%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
S L + + +
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETR 63
Query: 72 GANKLSGEIPFSIYNLSSLSL--LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI 129
L + + + L+ L P L +L+ + +
Sbjct: 64 TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLME-L 119
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFS-LNHLGN-----GEKDDLEFV 183
P ++ + L LT+ +N S+ +L +L+ +S L D
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 184 SSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLEL 243
LVN L+ + + LP S+ NL LK + N+ L + + +L LE
Sbjct: 180 QGLVN---LQSLRLEWTGIRS-LPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233
Query: 244 LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI 303
LDL G L+RL LK L +P + LT L L G +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 304 PSSLGKCKNLILLDLSNNNLT 324
PS + + ++ + +
Sbjct: 294 PSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 7e-21
Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 50/267 (18%)
Query: 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM 66
+ P + LS L+ + + L E+P + + LE L+ A N +P +++ L R+
Sbjct: 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
R + A E+P + + + L NL+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQ----------------GLVNLQSLRLEWTGIR 196
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186
+PASI+N NL L I+ + S P++ +L
Sbjct: 197 S-LPASIANLQNLKSLKIRNSPLSALGPAIHHL--------------------------- 228
Query: 187 VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDL 246
+LE +++ P G LKR + + +P + L LE LDL
Sbjct: 229 ---PKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 247 GDNQFTGRILGSIGDLQKLQRLRLKGN 273
R+ I L + + +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 15/178 (8%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGN---------LSSLEFLSAAVNQFVGQIPE 58
+P + SL++LR L++ E+P + L +L+ L +P
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200
Query: 59 TLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118
+++ L+ ++S+ + LS + +I++L L LD + P G L+ L
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRL 258
Query: 119 N-FGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGN 174
+ +P I + L +L ++ ++P + L + +
Sbjct: 259 ILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 5e-14
Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 32/199 (16%)
Query: 276 LGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK--------------------NLIL 315
+G + + L F+G+ L + + N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ L T + L+L L P L +L + + L E
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-E 118
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFF-- 433
+P+++ LE L + N + +P+S +SL ++ L + +P+ +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 434 -------LQNLNLSSNHFE 445
LQ+L L
Sbjct: 178 EHQGLVNLQSLRLEWTGIR 196
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 1/106 (0%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
+ + L KL L + P FG + L+ L + +P + L ++
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLP 113
+ +P I L + ++ P + LQ L P
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHRPVARP 325
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-36
Identities = 89/487 (18%), Positives = 172/487 (35%), Gaps = 46/487 (9%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF--VGQIPETLSELKRM 66
+L LR L + + + P +F L L L LK +
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 67 RSIGFGANKLSG-EIPFSIYNLSSLSLLDFPVNQLQGSLPSDI-GFTLPNLEVLNFGNNQ 124
+ N++ + S L+SL +DF NQ+ ++ L + N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 125 FTGPIPASISNASN------LMRLTIQKNGFSGKVP-------------SLENLYKLQRV 165
+ N L L + NG++ + SL + +
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 166 SFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNN 225
F +++ + +++ ++ S + +++S + L LK + N
Sbjct: 246 GFGFHNIKDPDQNTFAGLAR----SSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYN 300
Query: 226 QLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN 285
++ L NL++L+L N + L K+ + L+ N +
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Query: 286 LTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345
L L TL N L +++ ++ + LS N L T+P + + + LS+
Sbjct: 361 LEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLTAN----LIHLSE 410
Query: 346 NQLNGPLPSNFGI-LKNLGVLDVSENKLSGEIPNSL-GSCVRLEQLVMNGNFFQGNIPSS 403
N+L F + + +L +L +++N+ S + LEQL + N Q +
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470
Query: 404 -----FSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSS 458
F L +Q L L+ N L+ P F + L+ L+L+SN + + +N
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLE 529
Query: 459 AISLDGN 465
+ + N
Sbjct: 530 ILDISRN 536
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-36
Identities = 92/491 (18%), Positives = 159/491 (32%), Gaps = 40/491 (8%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQI-PETLSELKRMRSIGFGA 73
L+ L + FN + SSF L L+ L I E L +R + G+
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLNFGNNQFTG-PIPA 131
+K+ P + L L L L ++ D F L L L+ NQ +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 132 SISNASNLMRLTIQKNGFSG-KVPSLENLY--KLQRVSFSLNHLGNGEKDDLEFVSSLVN 188
S ++L + N LE L L S + N L + D +
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 189 ASRLEMMEISINNFGGMLPESVGN-----------LSTRLKRFTVGNNQLFGNIPSGLGN 237
LE++++S N + + + N L+ + G + + +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 238 LV--NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295
L ++ LDL L+ L+ L L NK + L L L+
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355
N L S+ + +DL N++ L L LDL N L +
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ-TLDLRDNAL-----TT 376
Query: 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG-NIPSSFSSLRGIQNLD 414
+ ++ + +S NKL +L + ++ N + +I + +Q L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 415 LSRNNLSGRIPKY-FENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGIS 473
L++N S L+ L L N + + +G +L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE-----TELCWDVFEGLSHL----Q 483
Query: 474 ELHLSTCSIKE 484
L+L+ +
Sbjct: 484 VLYLNHNYLNS 494
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 7e-32
Identities = 76/430 (17%), Positives = 148/430 (34%), Gaps = 33/430 (7%)
Query: 24 HFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPF- 82
F NL+ ++P L++ E L + N + L++++ + G+ I
Sbjct: 12 RFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67
Query: 83 SIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI--PASISNASNLM 140
+ NL +L +LD +++ L D L +L L + + N L
Sbjct: 68 AFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 141 RLTIQKNGFS--GKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEIS 198
RL + KN PS L L+ + FS N + + +LE + L ++
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK----TLSFFSLA 182
Query: 199 INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGS 258
N+ + G + + + GN +++ N + S
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDV-------SGNGWTVDITGNFSNAISKSQAFS 235
Query: 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTL--LFTLSFEGNRLEGSIPSSLGKCKNLILL 316
+ + + ++ L + L + K+L +L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 317 DLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376
+L+ N + GL +L L+LS N L SNF L + +D+ +N ++
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQ-VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQN 436
+ +L+ L + N ++ + I ++ LS N L +
Sbjct: 355 DQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV----TLPKINLTANL 405
Query: 437 LNLSSNHFEG 446
++LS N E
Sbjct: 406 IHLSENRLEN 415
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-30
Identities = 85/451 (18%), Positives = 160/451 (35%), Gaps = 43/451 (9%)
Query: 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLS--SLEFLSAAVNQFVGQIPETLSE-L 63
+ G L+ L+++ N + L +L F S A N ++ + +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 64 KRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123
R++ +SG N ++ + N + S + ++ FG +
Sbjct: 199 NPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSL-ILAHHIMGAGFGFH 250
Query: 124 QFTGPIPASISN--ASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDD 179
P + + S++ L + + S E L L+ ++ + N + +
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADE- 308
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLV 239
+ L+++ +S N G + + L ++ + N + L
Sbjct: 309 -----AFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRL 299
L+ LDL DN T +I + + + L GNK L +P + NRL
Sbjct: 363 KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNK-LVTLPKINLTAN---LIHLSENRL 413
Query: 300 EG-SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN--- 355
E I L + +L +L L+ N + + + L L +N L +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 356 --FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNL 413
F L +L VL ++ N L+ P L L +N N + + ++ L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEIL 531
Query: 414 DLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
D+SRN L P F + L L+++ N F
Sbjct: 532 DISRNQLLAPNPDVFVS---LSVLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 3e-22
Identities = 60/323 (18%), Positives = 117/323 (36%), Gaps = 28/323 (8%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
S +R L + + F L L+ L+ A N+ E L ++ + N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
L + Y L ++ +D N + + L L+ L+ +N T +I
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLN--HLGNGEKDDLEFVSSLVNASRL 192
++ + + N L L +++ + N HL ++L+ + L+ L
Sbjct: 379 FIPSIPDIFLSGN----------KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL-----GNLVNLELLDLG 247
+++ ++ N F + + + L++ +G N L + L L +L++L L
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488
Query: 248 DNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSL 307
N G L L+ L L N+ L + + L L N+L P
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHND-LPANLEILDISRNQLLAPNPDVF 546
Query: 308 GKCKNLILLDLSNNNLTGTIPTE 330
+L +LD+++N
Sbjct: 547 ---VSLSVLDITHNKFICECELS 566
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 3e-36
Identities = 91/455 (20%), Positives = 177/455 (38%), Gaps = 31/455 (6%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG-QIPETLSELKRMR 67
SL L L + N+LS S FG LSSL++L+ N + + L ++
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 68 SIGFGANKLSGEIP-FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
++ G + EI L+SL+ L+ L+ + S ++ ++ L ++
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA 185
Query: 127 GPIPASISNASNLMRLTIQKNG----FSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL-E 181
+ S++ L ++ +P E +++++F + L + ++L +
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLS-------TRLKRFTVGNNQLFGNIPSG 234
+ ++ S +E + ++N G P +S ++R + LF ++ +
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305
Query: 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI---PSSVGNLTLLFT 291
L ++ + + +++ L+ L+ L L N + E + G L T
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 292 LSFEGNRLE--GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L N L L KNL LD+S N +P + +L+LS +
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR 423
Query: 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409
+ + I + L VLDVS N L L L++L ++ N + +S
Sbjct: 424 V-VKT--CIPQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLKTLPDASL--FPV 474
Query: 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
+ + +SRN L F+ LQ + L +N +
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-32
Identities = 82/469 (17%), Positives = 163/469 (34%), Gaps = 28/469 (5%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
+ +++L + FN ++ ++L+ L ++ + L + + N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLNFG-NNQFTGPIPAS 132
LS LSSL L+ N Q +L F L NL+ L G F+
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 133 ISNASNLMRLTIQKNGFSG-KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL--VNA 189
+ ++L L I+ + SL+++ + ++ L+ + + +SS+ +
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203
Query: 190 SRLEMMEISINNF-GGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGD 248
+ + + + L+ R T + + + L +E D
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 249 NQFTGRILGSIGDLQK--------LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
N + + ++RL + ++ + L + ++ E +++
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKNQLN--GPLPSNF 356
S K+L LDLS N + + L LS+N L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
LKNL LD+S N +P+S ++ L ++ + +L + LD+S
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVS 439
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465
NNL + LQ L +S N + +P +F + + N
Sbjct: 440 NNNLD-SFSLFLPR---LQELYISRNKLK-TLPDASLFPVLLVMKISRN 483
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-29
Identities = 83/428 (19%), Positives = 153/428 (35%), Gaps = 47/428 (10%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSG-EIPSSFGNLSSLEFLSAAVNQFVGQIPE-TLSELKRM 66
G LS L+ L + N + S F NL++L+ L + +I + L +
Sbjct: 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+ A L S+ ++ + L +++ L L ++ L +
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209
Query: 127 GPIPASISNASNLMRL--------TIQKNGFSGKVPSLENLYKLQRVSF---SLNHLGNG 175
+ + + + F+ + L + +L V F +LN LG+
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269
Query: 176 EKDDLEFVSSL--VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPS 233
+ + VS L V + + I L L ++KR TV N+++F +P
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPC 327
Query: 234 GLG-NLVNLELLDLGDNQFTGRIL---GSIGDLQKLQRLRLKGNKF--LGEIPSSVGNLT 287
+L +LE LDL +N L G LQ L L N + + + L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV---------------- 331
L +L N +P S + + L+LS+ + + T +
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDS 445
Query: 332 --IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389
+ L L L +S+N+L LP + L V+ +S N+L L+++
Sbjct: 446 FSLFLPRLQ-ELYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502
Query: 390 VMNGNFFQ 397
++ N +
Sbjct: 503 WLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 73/426 (17%), Positives = 135/426 (31%), Gaps = 55/426 (12%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
L+ L L + +L S ++ + L+ +++ +
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
L +R + NL+ PV+++ +
Sbjct: 193 DILSSVRYLELRDT-----------NLARFQFSPLPVDEVSSPM------KKLAFRGSVL 235
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDL 180
+ F + + L + +G L E D +
Sbjct: 236 TDESFN-ELLKLLRYILELSEVEFDDCTLNG-----------------LGDFNPSESDVV 277
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG-NLV 239
+ + + + I L L ++KR TV N+++F +P +L
Sbjct: 278 SELGKV-ETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHLK 334
Query: 240 NLELLDLGDNQFTGRIL---GSIGDLQKLQRLRLKGNKF--LGEIPSSVGNLTLLFTLSF 294
+LE LDL +N L G LQ L L N + + + L L +L
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354
N +P S + + L+LS+ + + T + +L LD+S N L+
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLE-VLDVSNNNLDS-FSL 448
Query: 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLD 414
L L L +S NKL +P++ L + ++ N + F L +Q +
Sbjct: 449 F---LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 415 LSRNNL 420
L N
Sbjct: 504 LHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 8e-25
Identities = 62/391 (15%), Positives = 129/391 (32%), Gaps = 33/391 (8%)
Query: 79 EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASN 138
IP + +++ LD N++ D+ NL+VL +++ + + +
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 139 LMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMME 196
L L + N S + S L L+ ++ N L S N + L+ +
Sbjct: 76 LEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTNLQTLR 129
Query: 197 ISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256
I + T L + L L ++ ++ L L ++ +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG----------SIPSS 306
L ++ L L+ S + + + R +
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249
Query: 307 LGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI-------YLDLSKNQLNGPLPSNFGIL 359
+ + + D + N L P+E +S L L + + L L + + +L
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309
Query: 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI---PSSFSSLRGIQNLDLS 416
+ + + V +K+ + LE L ++ N + + +Q L LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369
Query: 417 RNNLS--GRIPKYFENFFFLQNLNLSSNHFE 445
+N+L + + L +L++S N F
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 12/254 (4%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290
IPSGL ++ LDL N+ T G + LQ L LK ++ + +L L
Sbjct: 20 IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77
Query: 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG-TIPTEVIGLSSLSIYLDLS-KNQL 348
L N L S G +L L+L N + + L++L L +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ-TLRIGNVETF 136
Query: 349 NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR 408
+ +F L +L L++ L SL S + L ++ + + L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196
Query: 409 GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468
++ L+L NL+ + + V ++ S L
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-------GSVLTDESFNELLKLLRY 249
Query: 469 CGGISELHLSTCSI 482
+SE+ C++
Sbjct: 250 ILELSEVEFDDCTL 263
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
D +PS + + LD+S NK++ L +C L+ L++ +
Sbjct: 10 CDGRSRSFTS-IPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
+F SL +++LDLS N+LS +F L+ LNL N ++ + + +F N
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPN 121
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-31
Identities = 68/397 (17%), Positives = 139/397 (35%), Gaps = 31/397 (7%)
Query: 87 LSSLSLLDFPVNQLQGSLPSDI-GFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQ 145
D ++ + TL N +++ F N+ A + + + L +
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 146 KNGFSG-KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGG 204
+ + +Q++ N + N L ++ + N+
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH------VFQNVPLLTVLVLERNDLSS 131
Query: 205 MLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQ 263
+ N +L ++ NN L I +L+ L L N+ T + +
Sbjct: 132 LPRGIFHNT-PKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIP 186
Query: 264 KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNL 323
L + N S++ + L N + + + L +L L +NNL
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238
Query: 324 TGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSC 383
T ++ L + +DLS N+L + F ++ L L +S N+L +
Sbjct: 239 T-DTAW-LLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294
Query: 384 VRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNH 443
L+ L ++ N ++ + ++NL L N++ + L+NL LS N
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350
Query: 444 FEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
++ ++ +F N + ++D D C +L C
Sbjct: 351 WD-CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 386
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 6e-28
Identities = 69/369 (18%), Positives = 131/369 (35%), Gaps = 28/369 (7%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
+L+ + + + + + + +E L+ Q + ++ + G
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N + P N+ L++L N L SLP I P L L+ NN +
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
++L L + N + V L + L + S N L S+L +E
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-----------STLAIPIAVE 208
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
++ S N+ ++ ++ L + +N L + L N L +DL N+
Sbjct: 209 ELDASHNSI-NVVRG---PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEK 262
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
+ +Q+L+RL + N+ L + + L L N L + + + L
Sbjct: 263 IMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
L L +N++ T+ +L L LS N + S + +N+ V +
Sbjct: 321 ENLYLDHNSIV-TLKLST--HHTLK-NLTLSHNDWDC--NSLRALFRNVARPAVDDADQH 374
Query: 374 GEIPNSLGS 382
+I L
Sbjct: 375 CKIDYQLEH 383
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 55/369 (14%), Positives = 113/369 (30%), Gaps = 32/369 (8%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
+ L + + L++ + ++ + L +++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
+ ++ ++ ++ L N ++ LP + +P L VL N +
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVSS 185
N L L++ N ++ + LQ + S N L ++ S
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-----THVDL-SL 184
Query: 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLD 245
+ + + ++ ++ +N + + + V L +L
Sbjct: 185 IPSLFHANVSYNLLSTLAI---------PIAVEELDASHNSI-NVVRGPV--NVELTILK 232
Query: 246 LGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIP 304
L N T + + L + L N+ L +I + L L NRL ++
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALN 288
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364
L +LDLS+N+L + L L L N + L L
Sbjct: 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIV-TLK--LSTHHTLKN 343
Query: 365 LDVSENKLS 373
L +S N
Sbjct: 344 LTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 15/237 (6%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLL 289
I S L + + L + + K + + ++P+++ + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQV 71
Query: 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQL 348
L+ ++E + + L + N + +P V + L L L +N L
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL-TVLVLERNDL 129
Query: 349 NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR 408
+ F L L +S N L ++ + L+ L ++ N ++ S +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186
Query: 409 GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465
+ + ++S N LS ++ L+ S N V V + + L N
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR-GPVNVELTILKLQHN 236
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 8e-14
Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 9/217 (4%)
Query: 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI 332
I S++ + + + + + N ++ N+ + +P ++
Sbjct: 7 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65
Query: 333 -GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
+ L+L+ Q+ F + L + N + P+ + L LV+
Sbjct: 66 DSFRQVE-LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451
N F + + L +S NNL F+ LQNL LSSN V +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL- 182
Query: 452 GVFSNSSAISLDGND----NLCGGISELHLSTCSIKE 484
+ + ++ N + + EL S SI
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-30
Identities = 97/432 (22%), Positives = 164/432 (37%), Gaps = 70/432 (16%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
S + L+ H +NL+ E+P N+ S A +++ P E + M
Sbjct: 9 SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
L+ L SLP +LE L N T +P
Sbjct: 68 CL-----------DRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELP 110
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
+ +L+ S P LE L S N LE + L N+S L+
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLG------VSNNQ--------LEKLPELQNSSFLK 156
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
++++ N+ LP+ + L+ GNNQL +P L NL L + +N
Sbjct: 157 IIDVDNNSL-KKLPDLPPS----LEFIAAGNNQL-EELPE-LQNLPFLTAIYADNNSLK- 208
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
L+ + N E + NL L T+ + N L+ ++P +L
Sbjct: 209 ---KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SL 259
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
L++ +N LT +P L+ LD+S+N +G L + NL L+ S N++
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTF----LDVSENIFSG-LSE---LPPNLYYLNASSNEIR 310
Query: 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFF 433
+ + S LE+L ++ N +P+ L + L S N+L+ +P+ +N
Sbjct: 311 -SLCDLPPS---LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN--- 358
Query: 434 LQNLNLSSNHFE 445
L+ L++ N
Sbjct: 359 LKQLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-27
Identities = 93/451 (20%), Positives = 157/451 (34%), Gaps = 78/451 (17%)
Query: 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG------------ 54
++P + ++ ++ P G +
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84
Query: 55 QIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPN 114
+PE L+ S+ N L+ E+P +L SL + + + L LP P
Sbjct: 85 SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-DLP-------PL 132
Query: 115 LEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGN 174
LE L NNQ +P + N+S L + + N K+P L L+ ++ N
Sbjct: 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL--PPSLEFIAAGNNQ--- 184
Query: 175 GEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG 234
LE + L N L + N+ LP+ + L+ GNN L
Sbjct: 185 -----LEELPELQNLPFLTAIYADNNSLKK-LPDLPLS----LESIVAGNNIL--EELPE 232
Query: 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294
L NL L + +N + L+ L ++P +LT L
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDVSEN 287
Query: 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354
+ L P NL L+ S+N + ++ L L++S N+L LP+
Sbjct: 288 IFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEE----LNVSNNKLIE-LPA 334
Query: 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLD 414
L L S N L+ E+P + L+QL + N + P S+ D
Sbjct: 335 LPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVE-----D 381
Query: 415 LSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
L N+ +P+ +N L+ L++ +N
Sbjct: 382 LRMNSHLAEVPELPQN---LKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-27
Identities = 84/419 (20%), Positives = 147/419 (35%), Gaps = 65/419 (15%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
L +L N+L+ E+P +L SL + + +P L L
Sbjct: 89 LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL-SDLPPLLEYLG------VSN 140
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N+L ++P + N S L ++D N L+ LP P+LE + GNNQ +P +
Sbjct: 141 NQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-EL 191
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
N L + N K+P + L+ + N L E + L N L
Sbjct: 192 QNLPFLTAIYADNNSLK-KLP--DLPLSLESIVAGNNIL--------EELPELQNLPFLT 240
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
+ N LP+ +L + V +N L ++P +L L++ + + +
Sbjct: 241 TIYADNNLLK-TLPDLPPSL----EALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSE 294
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
L L N+ + + +L L+ N+L +P+ L
Sbjct: 295 LP-------PNLYYLNASSNE-IRSLCDLPPSLE---ELNVSNNKLI-ELPALPP---RL 339
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIY-----------LDLSKNQLNGPLPSNFGILKNL 362
L S N+L +P L L + + ++N L + +NL
Sbjct: 340 ERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
L V N L E P+ S +E L MN + + +++ ++
Sbjct: 399 KQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 55/295 (18%), Positives = 107/295 (36%), Gaps = 45/295 (15%)
Query: 207 PESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266
P +V N T L+ ++ L +P N+ + +++ G+ +++
Sbjct: 5 PRNVSN--TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 267 RLRLKGNKF------------LGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314
RL+ L +P +L +L N L +P K+L+
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLL 117
Query: 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374
+ + + L+ L L YL +S NQL LP L ++DV N L
Sbjct: 118 VDNNNLKALS--------DLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK- 166
Query: 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434
++P+ S LE + N + +L + + N+L ++P + L
Sbjct: 167 KLPDLPPS---LEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLS---L 217
Query: 435 QNLNLSSNHFEGEVPIKGVFSNSSAISLDGN-----DNLCGGISELHLSTCSIKE 484
+++ +N E E+P + I D N +L + L++ + +
Sbjct: 218 ESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 271
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 67/310 (21%), Positives = 111/310 (35%), Gaps = 50/310 (16%)
Query: 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFG 72
L +A N L E+P NL L + A N ++P+ L+ I G
Sbjct: 170 DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAG 223
Query: 73 ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPAS 132
N L E+P + NL L+ + N L+ +LP P+LE LN +N T +P
Sbjct: 224 NNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL 275
Query: 133 ISNASNLMRLTIQKNGFSGKVPSLENLY----KLQRVSFSLNHLG--NGEKDDLEFVSSL 186
+ + L +G S P+L L +++ + L N + L + +L
Sbjct: 276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL 335
Query: 187 VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLEL--- 243
RLE + S N+ +PE NL K+ V N L P ++ +L +
Sbjct: 336 P--PRLERLIASFNHLA-EVPELPQNL----KQLHVEYNPL-REFPDIPESVEDLRMNSH 387
Query: 244 -------------LDLGDNQFTGRILGSIGD-LQKLQRLRLKGNKFLGEIPSSVGNLTLL 289
L + N D + ++ LR+ + + + L
Sbjct: 388 LAEVPELPQNLKQLHVETNPLR-----EFPDIPESVEDLRMNSERVVDPYEFAHETTDKL 442
Query: 290 FTLSFEGNRL 299
FE +
Sbjct: 443 EDDVFEHHHH 452
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 8e-30
Identities = 52/281 (18%), Positives = 98/281 (34%), Gaps = 17/281 (6%)
Query: 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLG 247
N +R ++ +++ ++ L + +K + N L + L LELL+L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 248 DNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSL 307
N + L L+ L L N + + TL N + + S
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR 118
Query: 308 GKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLD 366
G+ + L+NN +T + S + YLDL N+++ L L+
Sbjct: 119 GQ--GKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426
+ N + ++ + +L+ L ++ N + F S G+ + L N L I K
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231
Query: 427 YFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDN 467
L++ +L N F N ++
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 57/391 (14%), Positives = 121/391 (30%), Gaps = 77/391 (19%)
Query: 32 IPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91
I N + + ++
Sbjct: 2 IHEIKQNGNRYKIE----------------------------------------KVTD-- 19
Query: 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSG 151
+ L+ + + + N++ L+ N + A ++ + L L + N
Sbjct: 20 ------SSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY- 71
Query: 152 KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVG 211
+ LE+L L+ + + N++ L+ +E + + NN + S G
Sbjct: 72 ETLDLESLSTLRTLDLNNNYV-----------QELLVGPSIETLHAANNNI-SRVSCSRG 119
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQKLQRLRL 270
+ + NN++ G ++ LDL N+ L+ L L
Sbjct: 120 QGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
+ N + ++ V L TL N+L + + + L NN L I
Sbjct: 177 QYNF-IYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLV 390
+ +L + DL N + +F KN V V++ + ++ + L
Sbjct: 233 LRFSQNLE-HFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLG 289
Query: 391 MNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
G + ++P+ F + + L ++
Sbjct: 290 HYGAYCCEDLPAPF----ADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-21
Identities = 50/360 (13%), Positives = 113/360 (31%), Gaps = 51/360 (14%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
+ ++ + V ++L + S + +++ L + N L+ ++ + +
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N L + +LS+L LD N +Q L P++E L+ NN + + S
Sbjct: 68 NVLYETLDLE--SLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR-VSCSR 118
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
+ + N + L+ + SR++
Sbjct: 119 --GQGKKNIYLANN----------KITMLRDLDEG-------------------CRSRVQ 147
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
+++ +N + + S L+ + N ++ ++ + L+ LDL N+
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA- 204
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
+ + + L+ NK L I ++ L GN KN
Sbjct: 205 FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQ 262
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
+ ++ + T L LP+ F ++ + +
Sbjct: 263 RVQTVAKQTVKKL--TGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 12/186 (6%)
Query: 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318
+ + + ++ + + S + + L GN L + L L LL+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378
S+N L ++ LS+L LDL+ N + + ++ L + N +S +
Sbjct: 66 SSNVLYE--TLDLESLSTL-RTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC 116
Query: 379 SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG-RIPKYFENFFFLQNL 437
S G + + + N +Q LDL N + + + L++L
Sbjct: 117 SRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 438 NLSSNH 443
NL N
Sbjct: 175 NLQYNF 180
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 32/325 (9%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
+ L + S ++ L + N LS + + LE L+ + N + + L
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LE 77
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +R++ N + + S+ L N + + + +
Sbjct: 78 SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR---GQGKKNIYLA 128
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSG--KVPSLENLYKLQRVSFSLNHLGNGEKDD 179
NN+ T S + L ++ N + L+ ++ N
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-------- 180
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLV 239
+ V V ++L+ +++S N + + + ++ NN+L I L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA-AGVTWISLRNNKL-VLIEKALRFSQ 237
Query: 240 NLELLDLGDNQFT-GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
NLE DL N F G + Q++Q + + K L + TL G
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP---TLGHYGAY 294
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNL 323
+P+ L+ L +++
Sbjct: 295 CCEDLPAPFA----DRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
+I + +++++L + + ++ LDLS N L+ ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVK-ELDLSGNPLSQISAADLAPFTK 59
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
L +L++S N L E L S L L +N N+ I+ L + NN+S
Sbjct: 60 LELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112
Query: 422 GRIPKYFENFFFLQNLNLSSNH 443
R+ +N+ L++N
Sbjct: 113 -RVS--CSRGQGKKNIYLANNK 131
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411
+ + V+++ L + + S +++L ++GN + + ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 412 NLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
L+LS N L + E+ L+ L+L++N+ +
Sbjct: 62 LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 9e-30
Identities = 68/346 (19%), Positives = 129/346 (37%), Gaps = 42/346 (12%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENLY 160
++P I +L+ G N+ ++ +L L + +N S V NL+
Sbjct: 25 AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80
Query: 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRF 220
L+ + N L I + F G+ + L +
Sbjct: 81 NLRTLGLRSNRLK----------------------LIPLGVFTGL---------SNLTKL 109
Query: 221 TVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI 279
+ N++ + + +L NL+ L++GDN + L L++L L+ L I
Sbjct: 110 DISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSI 167
Query: 280 PSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS 338
P+ +L L L + S + L +L++S+ T+ + +L+
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227
Query: 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398
L ++ L L L L++S N +S + L +RL+++ + G
Sbjct: 228 -SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
P +F L ++ L++S N L+ F + L+ L L SN
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 7/237 (2%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+ T + +G N++ + +LE L+L +N + G+ +L L+ L L+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 272 GNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
N+ L IP V L+ L L N++ + NL L++ +N+L I
Sbjct: 89 SNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146
Query: 331 VI-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389
GL+SL L L K L L L VL + ++ S RL+ L
Sbjct: 147 AFSGLNSLEQ-LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 390 VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFLQNLNLSSNHFE 445
++ + + + + +L ++ NL+ +P + +L+ LNLS N
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 4e-22
Identities = 69/361 (19%), Positives = 119/361 (32%), Gaps = 62/361 (17%)
Query: 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK 75
++ R L + N + F + LE L N P + L +R++G +N+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 76 LSGEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
L IP + LS+L+ LD N++ L + L NL+ L G+N
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-------- 141
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194
I FSG L L++++ +L
Sbjct: 142 --------YISHRAFSG-------LNSLEQLTLEKCNL---------------------- 164
Query: 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR 254
I + L + + + L L++L++ +
Sbjct: 165 TSIPTEALSHL---------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 255 ILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
+ + L L + L +P +L L L+ N + S L + L
Sbjct: 216 MTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 314 ILLDLSNNNLTGTIPTEV-IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372
+ L L + GL+ L + L++S NQL S F + NL L + N L
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRV-LNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Query: 373 S 373
+
Sbjct: 333 A 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 21/226 (9%)
Query: 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV- 331
K +P + T L NR++ +L L+L+ N ++ +
Sbjct: 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAF 76
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
L +L L L N+L F L NL LD+SENK+ + L+ L +
Sbjct: 77 NNLFNLR-TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFLQNLNLSSNHFEGEVPI 450
N +FS L ++ L L + NL+ IP + L L L + +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIR- 192
Query: 451 KGVFSNSSA---ISLDGN-------DNLCGGIS--ELHLSTCSIKE 484
F + + N G++ L ++ C++
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 4/166 (2%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
L L L L + N++ SF L L+ L + ++ + + S
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP 128
+ L+ ++ +L L L+ N + ++ + L L+ + Q
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVV 287
Query: 129 IPASISNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHL 172
P + + L L + N + + ++ L+ + N L
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 9e-28
Identities = 73/353 (20%), Positives = 116/353 (32%), Gaps = 52/353 (14%)
Query: 87 LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQK 146
+ ++L+ + L +LP + ++ L +N T +PA L L +
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPALPPE---LRTLEVSG 90
Query: 147 NGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGML 206
N + L +L S L HL S L + I N L
Sbjct: 91 NQLTSLPVLPPGLLELSIFSNPLTHLPA-------------LPSGLCKLWIFGNQLTS-L 136
Query: 207 PESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266
P L + +V +NQL ++P+ L L + NQ T + LQ
Sbjct: 137 PVLPPGL----QELSVSDNQL-ASLPALPSELCKLWAYN---NQLT-SLPMLPS---GLQ 184
Query: 267 RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGT 326
L + N+ L +P+ L L+ + NRL S+P+ L L +S N LT +
Sbjct: 185 ELSVSDNQ-LASLPTLPSELYKLWAYN---NRLT-SLPALPS---GLKELIVSGNRLT-S 235
Query: 327 IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386
+P L L +S N+L LP L L V N+L+ +P SL
Sbjct: 236 LPVLPSELKEL----MVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSE 286
Query: 387 EQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439
+ + GN + + L
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-27
Identities = 72/340 (21%), Positives = 108/340 (31%), Gaps = 52/340 (15%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
+ L+ +P + + ++ L P N L SLP+ L L NQ T +P
Sbjct: 50 SGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQLTS-LPVLP 100
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
L + L L+ N L L
Sbjct: 101 PGLLELSIFSNPLTHLPALPSGLCKLW------IFGNQLT-------SLPVLPPGLQELS 147
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
+ +N LP L + NNQL ++P L L + DNQ
Sbjct: 148 VS----DNQLASLPALPSEL----CKLWAYNNQL-TSLPMLPSGLQEL---SVSDNQLA- 194
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
+ +L KL + L +P+ L L GNRL S+P L
Sbjct: 195 SLPTLPSELYKLWAYNNR----LTSLPALPSGLK---ELIVSGNRLT-SLPVLPS---EL 243
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
L +S N LT ++P GL SL + +NQL LP + L + +++ N LS
Sbjct: 244 KELMVSGNRLT-SLPMLPSGLLSL----SVYRNQLTR-LPESLIHLSSETTVNLEGNPLS 297
Query: 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNL 413
+L F S+ R +
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 9e-25
Identities = 69/377 (18%), Positives = 119/377 (31%), Gaps = 58/377 (15%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
+ L V + L+ +P + L N +P EL R++ N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
+L+ +P L LS+ P+ L L L NQ T +P
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTS-LPVLPP 141
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194
L L++ N + L KL + L L S L+
Sbjct: 142 G---LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPM-------------LPSGLQE 185
Query: 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR 254
+ +S N LP L + NN+L ++P+ L + L + N+
Sbjct: 186 LSVSDNQLA-SLPTLPSEL----YKLWAYNNRL-TSLPALPSGL---KELIVSGNR---- 232
Query: 255 ILGSIGD-LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
L S+ +L+ L + GN+ L +P L +LS N+L +P SL +
Sbjct: 233 -LTSLPVLPSELKELMVSGNR-LTSLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSE 286
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVL-DVSENKL 372
++L N L+ + ++S + + + L + + L
Sbjct: 287 TTVNLEGNPLSERTLQALREITS----APGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
Query: 373 SGEIPNSLGSCVRLEQL 389
R
Sbjct: 343 VPAREGEPAPADRWHMF 359
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 2e-22
Identities = 70/360 (19%), Positives = 114/360 (31%), Gaps = 58/360 (16%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
+ + TL + NNL+ +P+ L +LE NQ +P L +
Sbjct: 60 PAHITTLVIPDNNLT-SLPALPPELRTLEVSG---NQLT-SLPVLPPGLLELSIFSNPLT 114
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
L L L + NQL SLP L+ L+ +NQ +PA S
Sbjct: 115 HLPALPS----GLCKLWIFG---NQLT-SLPVLPP----GLQELSVSDNQLAS-LPALPS 161
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194
L +L N + L +L S S N L + +L
Sbjct: 162 E---LCKLWAYNNQLTSLPMLPSGLQEL---SVSDNQLA-------SLPTLPSELYKLWA 208
Query: 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR 254
+ + LP L K V N+L ++P L L + N+ T
Sbjct: 209 YNNRLTS----LPALPSGL----KELIVSGNRL-TSLPVLPSELKEL---MVSGNRLT-- 254
Query: 255 ILGSIGD-LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
S+ L L + N+ L +P S+ +L+ T++ EGN L + +
Sbjct: 255 ---SLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS-ERTLQA--LREI 307
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP----LPSNFGILKNLGVLDVSE 369
+ + + L L+ P P+ G D ++
Sbjct: 308 TSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNAD 366
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-17
Identities = 67/328 (20%), Positives = 106/328 (32%), Gaps = 52/328 (15%)
Query: 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM 66
+P L +L + +L S L L NQ +P L
Sbjct: 95 SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL-TSLPVLPPGL--- 143
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+ + N+L+ +P L L + NQL SLP L+ L+ +NQ
Sbjct: 144 QELSVSDNQLA-SLPALPSELCKLWAYN---NQLT-SLPMLPS----GLQELSVSDNQLA 194
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186
+P S L +L N + L +L S N L +SL
Sbjct: 195 S-LPTLP---SELYKLWAYNNRLTSLPALPSGLKEL---IVSGNRL-----------TSL 236
Query: 187 -VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLD 245
V S L+ + +S N LP L +V NQL +P L +L + ++
Sbjct: 237 PVLPSELKELMVS-GNRLTSLPMLPSG----LLSLSVYRNQL-TRLPESLIHLSSETTVN 290
Query: 246 LGDNQFTGRILGSIGDLQKLQRL---RLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302
L N + R L ++ ++ ++ + P L L R
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350
Query: 303 IP----SSLGKCKNLILLDLSNNNLTGT 326
P G+ N L + L+ T
Sbjct: 351 APADRWHMFGQEDNADAFSLFLDRLSET 378
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 74/427 (17%), Positives = 143/427 (33%), Gaps = 23/427 (5%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF-VGQIPETLSELKRMR 67
+L L + N L S +L+ L + N F I + + +++
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI--GFTLPNLEVLNFGNNQF 125
+G L I +L+ +L + F +L ++ N +F
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 126 TGPIPASISNASNL----MRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
+ S+ +NL ++ ++ N S + L L ++S + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLS----TRLKRFTVGNNQLFGNIPSGLGN 237
+ LV + + IS G L + S L V ++
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 238 LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297
N+ + + + + + L N + + G+LT L TL + N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 298 RLEGSIPSSLG---KCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQLNGPLP 353
+L+ + + K+L LD+S N+++ SL L++S N L +
Sbjct: 359 QLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL-SLNMSSNILTDTIF 416
Query: 354 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNL 413
+ VLD+ NK+ IP + L++L + N + F L +Q +
Sbjct: 417 RCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473
Query: 414 DLSRNNL 420
L N
Sbjct: 474 WLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 92/451 (20%), Positives = 148/451 (32%), Gaps = 51/451 (11%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
+ SLSKLR L + N + S F LE+L + N+
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---------------- 81
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLNFGNNQFTG 127
+I +L LD N +LP F + L+ L
Sbjct: 82 ---------VKISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV 187
I++ N+ ++ + G+ E L S + N E + VS
Sbjct: 130 SSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK- 187
Query: 188 NASRLEMMEISINNFGGMLPESVGNLST-----RLKRFTVGNNQLFGNIPSGLGNLV--- 239
+ LE+ I + L+ +L T+ N + N + LV
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247
Query: 240 NLELLDLGDNQFTGRILGSIGD-----LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294
+ + + + G++ D L+ L ++ + F + + +F
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN--GPL 352
+ K + LD SNN LT T+ L+ L L L NQL +
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-TLILQMNQLKELSKI 366
Query: 353 PSNFGILKNLGVLDVSENKL-SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411
+K+L LD+S+N + E L L M+ N I I+
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IK 424
Query: 412 NLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
LDL N + IPK LQ LN++SN
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASN 454
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 4e-19
Identities = 66/391 (16%), Positives = 122/391 (31%), Gaps = 32/391 (8%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N +S I +LS L +L N++Q L + LE L+ +N+ S
Sbjct: 31 NYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK---ISC 86
Query: 134 SNASNLMRLTIQKNGFS--GKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
NL L + N F N+ +L+ + S HL + ++
Sbjct: 87 HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
L + G+ + +L N + + + + NLEL ++
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVF----PTNKEFHFILDVSVKTVANLELSNIKCVLE 202
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
+ + L KLQ N L I ++ + + L +
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH---------------T 247
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSI----YLDLSKNQLNGPLPSNFGILKNLGVLDV 367
+ +SN L G + S S+ + + P + I N+ + +
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 368 SENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS--GRIP 425
+ + L + N + + L ++ L L N L +I
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367
Query: 426 KYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
+ LQ L++S N + KG S
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEK-KGDCSW 397
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 6/234 (2%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+LS + + N + S + +L L +L + N+ + Q+L+ L L
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEG-SIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
NK L +I L L N + I G L L LS +L +
Sbjct: 78 HNK-LVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGIL--KNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388
+ L+ + L L + P ++L ++ + + + S+ + LE
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
+ S L +Q N I + +F + L +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
+D SKN L +P + + +L++S+N +S + + S +L L+++ N Q
Sbjct: 5 VDRSKNGLIH-VPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
S F + ++ LDLS N L I L++L+LS N F+ +PI F N
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFD-ALPICKEFGN 113
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLS--GEIPSSFGNLSSLEFLSAAVNQF-VGQIP 57
N L V G L++L TL + N L +I + SL+ L + N +
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 58 ETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEV 117
S K + S+ +N L+ I + + +LD N+++ S+P + L L+
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQV-VKLEALQE 448
Query: 118 LNFGNNQFTGPIPASISNASNLMRLTIQKN 147
LN +NQ ++L ++ + N
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-26
Identities = 53/434 (12%), Positives = 129/434 (29%), Gaps = 50/434 (11%)
Query: 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFG 72
+ ++ + V ++L + S + +++ L + N L+ ++ +
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 73 ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPAS 132
+N L + +LS+L LD N +Q L P++E L+ NN + + S
Sbjct: 67 SNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR-VSCS 117
Query: 133 ISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRL 192
+ + N + L+ + SR+
Sbjct: 118 R--GQGKKNIYLANN----------KITMLRDLDEG-------------------CRSRV 146
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFT 252
+ +++ +N + + S L+ + N ++ ++ + L+ LDL N+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204
Query: 253 GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKN 312
+ + + L+ NK L I ++ L GN KN
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKN 261
Query: 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372
+ ++ + + + ++ L L + +
Sbjct: 262 QRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320
Query: 373 SG----EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428
G + + R ++ ++ I + L+ + L ++
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
Query: 429 ENFFFLQNLNLSSN 442
L +
Sbjct: 381 RAHAELDGTLQQAV 394
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 48/311 (15%), Positives = 96/311 (30%), Gaps = 29/311 (9%)
Query: 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLG 247
N +R ++ +++ ++ L + +K + N L + L LELL+L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 248 DNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPS-----------------SVGNLTLLF 290
N + L L+ L L N + E+ S
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKK 123
Query: 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350
+ N++ G + LDL N + E+ S +L+L N +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGI 410
+ L LD+S NKL+ + S + + + N I + + +
Sbjct: 184 -VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239
Query: 411 QNLDLSRNNLS-GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLC 469
++ DL N G + +F +Q + + ++ + + C
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCC 296
Query: 470 GGISELHLSTC 480
+
Sbjct: 297 EDLPAPFADRL 307
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 62/427 (14%), Positives = 128/427 (29%), Gaps = 33/427 (7%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
+ L + S ++ L + N LS + + LE L+ + N L
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLE 77
Query: 62 ELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L +R++ N + + S+ L N + + + +
Sbjct: 78 SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR---GQGKKNIYLA 128
Query: 122 NNQFTGPIPASISNASNLMRLTIQKNGFSG--KVPSLENLYKLQRVSFSLNHLGNGEKDD 179
NN+ T S + L ++ N + L+ ++ N
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-------- 180
Query: 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLV 239
+ V V ++L+ +++S N + + + ++ NN+L I L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA-AGVTWISLRNNKL-VLIEKALRFSQ 237
Query: 240 NLELLDLGDNQF-TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
NLE DL N F G + Q++Q + + K L T+ +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--ECTVPTLGHYGAYC 295
Query: 299 LEGSIPSSLGKCKNLILLDLS----NNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354
E + L + + + T + E + +D K Q +
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR-EIDALKEQYRTVIDQ 354
Query: 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLD 414
+ L+ + L ++ N + L+ + Q + + +Q L
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSPLQLLR 413
Query: 415 LSRNNLS 421
Sbjct: 414 AIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 12/186 (6%)
Query: 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318
+ + + ++ + + S + + L GN L + L L LL+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378
S+N L ++ LS+L LDL+ N + + ++ L + N +S +
Sbjct: 66 SSNVLYE--TLDLESLSTL-RTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC 116
Query: 379 SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG-RIPKYFENFFFLQNL 437
S G + + + N +Q LDL N + + + L++L
Sbjct: 117 SRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 438 NLSSNH 443
NL N
Sbjct: 175 NLQYNF 180
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 4e-16
Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 12/178 (6%)
Query: 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS 338
I N + L+ ++ S N+ LDLS N L+ ++ + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398
L+LS N L + L L LD++ N + L +E L N
Sbjct: 62 -LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113
Query: 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
S +N+ L+ N ++ +Q L+L N + V + ++
Sbjct: 114 VSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 329 TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388
E+ + ++ + L L S N+ LD+S N LS L +LE
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 448
L ++ N SL ++ LDL+ N + ++ L+ ++N+ V
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114
Query: 449 PIKGVFSNSSAISLDGN 465
I L N
Sbjct: 115 SC-SRGQGKKNIYLANN 130
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 7e-26
Identities = 69/369 (18%), Positives = 131/369 (35%), Gaps = 28/369 (7%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
+L+ + + + + + + +E L+ Q + ++ + G
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N + P N+ L++L N L SLP I P L L+ NN +
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
++L L + N + V L + L + S N L S+L +E
Sbjct: 168 QATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-----------STLAIPIAVE 214
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
++ S N+ ++ ++ L + +N L + L N L +DL N+
Sbjct: 215 ELDASHNSI-NVVRG---PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEK 268
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
+ +Q+L+RL + N+ L + + L L N L + + + L
Sbjct: 269 IMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326
Query: 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
L L +N++ T+ +L L LS N + S + +N+ V +
Sbjct: 327 ENLYLDHNSIV-TLKLST--HHTLK-NLTLSHNDWDC--NSLRALFRNVARPAVDDADQH 380
Query: 374 GEIPNSLGS 382
+I L
Sbjct: 381 CKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 4e-20
Identities = 56/309 (18%), Positives = 106/309 (34%), Gaps = 23/309 (7%)
Query: 137 SNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMME 196
R ++ K Y ++ E + + +++
Sbjct: 2 GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI----TLNNQKIVT 57
Query: 197 ISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRI 255
+ + + + +++ + + Q+ I + ++ L +G N
Sbjct: 58 FKNSTMRKLPAALLDSF-RQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLP 115
Query: 256 LGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314
++ L L L+ N L +P + N L TLS N LE + +L
Sbjct: 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374
L LS+N LT + + + SL + ++S N L S I + LD S N ++
Sbjct: 175 NLQLSSNRLT-HVDLSL--IPSLF-HANVSYNLL-----STLAIPIAVEELDASHNSIN- 224
Query: 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434
+ V L L + N + + G+ +DLS N L + F L
Sbjct: 225 VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 435 QNLNLSSNH 443
+ L +S+N
Sbjct: 281 ERLYISNNR 289
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 6e-11
Identities = 67/417 (16%), Positives = 127/417 (30%), Gaps = 90/417 (21%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
G + KL TL++ NNL +F +SL+ L + N+ + LS + +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 196
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP 128
N LS ++ ++ LD N + + + L +L +N T
Sbjct: 197 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT-- 245
Query: 129 IPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVN 188
L N L V S N L
Sbjct: 246 -----------------------DTAWLLNYPGLVEVDLSYNEL---------------- 266
Query: 189 ASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGD 248
+I + F M RL+R + NN+L + + L++LDL
Sbjct: 267 ------EKIMYHPFVKM---------QRLERLYISNNRL-VALNLYGQPIPTLKVLDLSH 310
Query: 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLG 308
N + + +L+ L L N + + L L+ N + + +L
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNS-IVTLKL--STHHTLKNLTLSHNDWDCNSLRAL- 365
Query: 309 KCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368
+N+ + + + I + L + K L+ L ++
Sbjct: 366 -FRNVARPAVDDADQHCKIDYQ---LEHGLCCKESDKPYLDRLL------------QYIA 409
Query: 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425
+ ++ + G C + + + L+G + L+ N L +
Sbjct: 410 LTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 46/350 (13%), Positives = 97/350 (27%), Gaps = 34/350 (9%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
L + L + + +N L + F + LE L + N+ V + + ++ +
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
N L + + L L N + +L T L+ L +N +
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLKNLTLSHNDWDCNSLR 363
Query: 132 SISNASNLMRLTIQKNGFSGKVP-----------SLENLYKLQRVSFSLNHLGNGEKDDL 180
++ N+ R + K+ S + +L + +
Sbjct: 364 ALF--RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQ 421
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
S+ + ++ + I GG+ + L + QL L
Sbjct: 422 GRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
L + + L R NK + +F+ +
Sbjct: 482 LHAEIDTNLRRYRL------PKDGLARSSDNLNKVFTHLKER---------QAFKLRETQ 526
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350
+ K K L+ N L + + + L L + ++
Sbjct: 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 8/234 (3%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270
+ST + + NQ+ I +L +LE+L L N +G+ L L L L
Sbjct: 61 GISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 271 KGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT 329
N+ L IP+ L+ L L N +E + + +L LDL I
Sbjct: 120 FDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 330 EV-IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388
GLS+L YL+L+ L +P+ L L LD+S N LS P S + L++
Sbjct: 179 GAFEGLSNLR-YLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
L M + Q ++F +L+ + ++L+ NNL+ F L+ ++L N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 9/234 (3%)
Query: 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGD 248
+ ++ + N + S +L L+ + N + I G L NL L+L D
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFD 121
Query: 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLS-FEGNRLEGSIPSS 306
N+ T G+ L KL+ L L+ N + IPS + L L E RL +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 307 LGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366
NL L+L+ NL IP + L L LDLS N L+ P +F L +L L
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLD-ELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+ ++++ N+ + L ++ + N F+ L ++ + L N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 8e-18
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 9/206 (4%)
Query: 265 LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324
+ L L N+ +S +L L L N + + NL L+L +N LT
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 325 GTIPTEV-IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE-NKLSGEIPNSLGS 382
TIP + LS L L L N + F + +L LD+ E +LS +
Sbjct: 126 -TIPNGAFVYLSKLK-ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 383 CVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
L L + + IP + + L + LDLS N+LS P F+ LQ L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 443 HFEGEVPIKGVFSNSSAI-SLDGNDN 467
+ + + F N ++ ++ N
Sbjct: 242 QIQ-VIE-RNAFDNLQSLVEINLAHN 265
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 55/267 (20%), Positives = 99/267 (37%), Gaps = 43/267 (16%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
++ LL+ NQ+Q + + L +LE+L N + + +NL L + N
Sbjct: 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 148 GFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGM 205
+ +P+ L KL+ + N + + I F +
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIES----------------------IPSYAFNRI 159
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQK 264
L+R +G + I G L NL L+L + ++ L K
Sbjct: 160 ---------PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIK 208
Query: 265 LQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNL 323
L L L GN L I L L L ++++ ++ ++L+ ++L++NNL
Sbjct: 209 LDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 324 TGTIPTEVI-GLSSLSIYLDLSKNQLN 349
T +P ++ L L + L N N
Sbjct: 268 T-LLPHDLFTPLHHLE-RIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 38/259 (14%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
R L +H N + +SF +L LE L + N + L + ++ N+L+
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 78 GEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLN-FGNNQFTGPIPASISN 135
IP LS L L N ++ S+PS +P+L L+ + + +
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 136 ASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM 195
SNL L + ++P+L L KL + S NHL
Sbjct: 184 LSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSA--------------------- 221
Query: 196 EISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGR 254
I +F G+ L++ + +Q+ I NL +L ++L N T
Sbjct: 222 -IRPGSFQGL---------MHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 255 ILGSIGDLQKLQRLRLKGN 273
L L+R+ L N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ NL +P G+S+ + L+L +NQ+ ++F L++L +L +S N +
Sbjct: 48 VICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFL 434
+ L L + N +F L ++ L L N + IP Y F L
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSL 162
Query: 435 QNLNLSSN 442
+ L+L
Sbjct: 163 RRLDLGEL 170
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
G L+ L TL + N L+ +F LS L+ L N + + +R
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164
Query: 69 IG-FGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
+ +LS + LS+L L+ + L+ +P+ L L+ L+ N +
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP--LIKLDELDLSGNHLSA 221
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHL 172
P S +L +L + ++ + +NL L ++ + N+L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
G LS LR L + NL EIP+ L L+ L + N P + L ++
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123
+ +++ + NL SL ++ N L LP D+ L +LE ++ +N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 4e-23
Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 10/252 (3%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK--FLGEIPS 281
N++ ++P+G+ + L+L N+ G L +L +L L N F G
Sbjct: 15 NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72
Query: 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV-IGLSSLSIY 340
S T L L N + ++ S+ + L LD ++NL V + L +L IY
Sbjct: 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IY 130
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLVMNGNFFQGN 399
LD+S F L +L VL ++ N P+ L L ++ +
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 400 IPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG--EVPIKGVFSNS 457
P++F+SL +Q L++S NN ++ LQ L+ S NH + ++ S+
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250
Query: 458 SAISLDGNDNLC 469
+ ++L ND C
Sbjct: 251 AFLNLTQNDFAC 262
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 33/236 (13%)
Query: 215 TRLKRFTVGNNQL-FGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKG 272
T+L + ++ +N L F S +L+ LDL N + + L++L+ L +
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110
Query: 273 NKFLGEIPSSV--GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
+ L ++ +L L L + +L +L ++ N+ +
Sbjct: 111 SN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 331 V-IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389
+ L +L+ +LDLS+ QL P+ F L +L VL++S N +
Sbjct: 170 IFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLD------------ 215
Query: 390 VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSNHF 444
+ L +Q LD S N++ + ++F L LNL+ N F
Sbjct: 216 -----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 50/254 (19%), Positives = 94/254 (37%), Gaps = 20/254 (7%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGK---VPSLENL 159
S+P+ I + L +N+ + L +L++ NG S K S
Sbjct: 21 SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 160 YKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKR 219
L+ + S N + + S+ + +LE ++ +N M SV L
Sbjct: 78 TSLKYLDLSFNGV-------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 220 FTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRIL-GSIGDLQKLQRLRLKGNKFLG 277
+ + +G L +LE+L + N F L +L+ L L L + L
Sbjct: 131 LDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LE 188
Query: 278 EIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLS 335
++ + +L+ L L+ N +L +LD S N++ T + +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247
Query: 336 SLSIYLDLSKNQLN 349
S +L+L++N
Sbjct: 248 SSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 47/264 (17%), Positives = 78/264 (29%), Gaps = 39/264 (14%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQ--FVGQIPETLSELKRMRSIGFGANK 75
L + N L F L+ L LS + N F G ++ ++ + N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLNFGNNQFTGPIPASIS 134
+ + + L L LDF + L+ + F L NL L+ + +
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 135 NASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRL 192
S+L L + N F L L + S L
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE------------------- 188
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFT 252
++S F + + L+ + +N F L +L++LD N
Sbjct: 189 ---QLSPTAFNSL---------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 253 GRILGSIGDLQK-LQRLRLKGNKF 275
+ L L L N F
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-- 373
+ ++ LT ++PT G+ S + L+L N+L F L L L +S N LS
Sbjct: 12 IRCNSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKY--FENF 431
G S L+ L ++ N + S+F L +++LD +NL ++ ++ F +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 125
Query: 432 FFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGNDNL----------CGGISELHLS 478
L L++S H G+F+ S+ + + GN ++ L LS
Sbjct: 126 RNLIYLDISHTHTR-VAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 479 TCSIKE 484
C +++
Sbjct: 184 QCQLEQ 189
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 7/168 (4%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE--TLSELKRM 66
+ L+ L + FN + + S+F L LE L + Q+ E L+ +
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL 128
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+ LSSL +L N Q + DI L NL L+ Q
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHL 172
P + ++ S+L L + N F + + + L LQ + +SLNH+
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPS-SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
G LS L L + N+ F L +L FL + Q P + L ++
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLP-NLEVLNFGNNQF 125
+ N F L+SL +LD+ +N + + P +L LN N F
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-22
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 10/223 (4%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
Q +P G+ + + L N+ + S + L L L N L I ++
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAA 75
Query: 284 -GNLTLLFTLSFEGNRLEGSIPSS-LGKCKNLILLDLSNNNLTGTIPTEV-IGLSSLSIY 340
L LL L N S+ + L L L L + + GL++L Y
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ-Y 133
Query: 341 LDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399
L L N L LP + F L NL L + N++S + L++L+++ N
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 400 IPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
P +F L + L L NNLS + LQ L L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 8/213 (3%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270
+ +R + N++ ++P+ NL +L L N + L L++L L
Sbjct: 29 GIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 271 KGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIP 328
N L + + L L TL + L+ + L L L +N L +P
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145
Query: 329 TEV-IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387
+ L +L+ +L L N+++ F L +L L + +N+++ P++ RL
Sbjct: 146 DDTFRDLGNLT-HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 388 QLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L + N + + LR +Q L L+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 46/188 (24%), Positives = 68/188 (36%), Gaps = 12/188 (6%)
Query: 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV- 331
+ L +P + + GNR+ +S C+NL +L L +N L I
Sbjct: 20 QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAF 76
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQL 389
GL+ L LDLS N + F L L L + L E+ L+ L
Sbjct: 77 TGLALLE-QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134
Query: 390 VMNGNFFQGNIPS-SFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 448
+ N Q +P +F L + +L L N +S + F L L L N V
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192
Query: 449 PIKGVFSN 456
F +
Sbjct: 193 H-PHAFRD 199
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 55/265 (20%), Positives = 86/265 (32%), Gaps = 61/265 (23%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
++ + N++ +P+ NL +L +N I
Sbjct: 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA----------------RIDAA 74
Query: 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207
F+G + LE L L + ++L + F G+
Sbjct: 75 AFTG-LALLEQLD-------------------------LSDNAQLR--SVDPATFHGL-- 104
Query: 208 ESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266
RL + L + G L L+ L L DN + DL L
Sbjct: 105 -------GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 267 RLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG 325
L L GN+ + +P L L L NR+ P + L+ L L NNL+
Sbjct: 157 HLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS- 214
Query: 326 TIPTEVI-GLSSLSIYLDLSKNQLN 349
+PTE + L +L YL L+ N
Sbjct: 215 ALPTEALAPLRALQ-YLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 7/168 (4%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIP-ETLSELKRMR 67
+ L L +H N L+ ++F L+ LE L + N + + T L R+
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 68 SIGFGANKLSGEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
++ L E+ + L++L L N LQ +LP D L NL L N+ +
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHL 172
+ +L RL + +N + V +L +L + N+L
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 41/258 (15%), Positives = 73/258 (28%), Gaps = 58/258 (22%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
+ + +H N +S +SF +L L N + L + + N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 78 GEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136
+ + + L L L LQ L + L L+ L +N
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ---------- 142
Query: 137 SNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMME 196
+ + F L L + N + +
Sbjct: 143 ------ALPDDTFRD-------LGNLTHLFLHGNRISS---------------------- 167
Query: 197 ISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRI 255
+ F G+ L R + N++ ++ +L L L L N +
Sbjct: 168 VPERAFRGL---------HSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 256 LGSIGDLQKLQRLRLKGN 273
++ L+ LQ LRL N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 25/117 (21%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
L L L +H N +S +F L SL+ L N+ +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR--------------VAH 191
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
+ A F +L L L N L +LP++ L L+ L +N +
Sbjct: 192 VHPHA--------FR--DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 2e-22
Identities = 69/392 (17%), Positives = 134/392 (34%), Gaps = 45/392 (11%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N ++ S L L L + ++ L +L +L NQF +
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGA 98
Query: 134 -SNASNLMRLTIQKNGF-SGKVP--SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
+ +NL LT+ + + + L L+ + N++ ++ S +N
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KKIQPASFFLNM 153
Query: 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDN 249
R +++++ N + E + N + L ++ L D+ +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL---------------RLSSITLQDMNEY 198
Query: 250 QFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK 309
G+ + L L GN F + + + ++ SS G
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 310 CK---------------NLILLDLSNNNLTGTIPTEV-IGLSSLSIYLDLSKNQLNGPLP 353
+ DLS + + + V + L L L++N++N +
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLE-QLTLAQNEIN-KID 315
Query: 354 SN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQN 412
N F L +L L++S+N L + +LE L ++ N + SF L ++
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375
Query: 413 LDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
L L N L F+ LQ + L +N +
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 4e-20
Identities = 69/368 (18%), Positives = 120/368 (32%), Gaps = 33/368 (8%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPS-SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
L L+ L V I + +F LSSL L NQF+ + L +
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106
Query: 68 SIGFGANKL-SGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
+ L + + + L+SL +L N ++ P+ + VL+ N+
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
Query: 126 TGPIPASI---SNASNLMRLTIQKNGF---------SGKVPSLENLYKLQRVSFSLNHLG 173
I + L + K + + + S N
Sbjct: 167 KS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 174 N-------GEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLS-TRLKRFTVGNN 225
+ S +++ S NF + L + +K + +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285
Query: 226 QLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV- 283
++F + + + +LE L L N+ + L L +L L N LG I S +
Sbjct: 286 KIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMF 343
Query: 284 GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYL 341
NL L L N + ++ S NL L L N L ++P + L+SL +
Sbjct: 344 ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ-KI 400
Query: 342 DLSKNQLN 349
L N +
Sbjct: 401 WLHTNPWD 408
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 98.1 bits (244), Expect = 5e-22
Identities = 55/269 (20%), Positives = 96/269 (35%), Gaps = 33/269 (12%)
Query: 181 EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240
++ S+ + + + N +L E L + + L ++P L
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKEC---LINQFSELQLNRLNL-SSLPDNLPP--Q 81
Query: 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300
+ +L++ N + L+ L N+ L +P +L L + N+L
Sbjct: 82 ITVLEITQNALI-SLPELPASLEYLD---ACDNR-LSTLPELPASLK---HLDVDNNQLT 133
Query: 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360
+P L ++ NN LT +P +SL L + NQL LP + +
Sbjct: 134 -MLPELPA---LLEYINADNNQLT-MLPEL---PTSLE-VLSVRNNQLTF-LPE---LPE 180
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN----IPSSFSSLRGIQNLDLS 416
+L LDVS N L +P E+ + + N IP + SL + L
Sbjct: 181 SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC-RENRITHIPENILSLDPTCTIILE 238
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
N LS RI + + + +F
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 6e-18
Identities = 57/335 (17%), Positives = 98/335 (29%), Gaps = 74/335 (22%)
Query: 26 NNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIY 85
NN S S + +S + ++ G N+ + +
Sbjct: 9 NNFSLSQNSFYNTISGTY----------ADYFSAWDKWEKQALPGENRNEAVSLLKECL- 57
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQ 145
++ S L L SLP ++ P + VL N +P ++ L L
Sbjct: 58 -INQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLPELPAS---LEYLDAC 108
Query: 146 KNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGM 205
N S +P L L+ + N L
Sbjct: 109 DNRLS-TLPEL--PASLKHLDVDNNQLTM------------------------------- 134
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGD-LQK 264
LPE L + NNQL +P +L E+L + +NQ L + + +
Sbjct: 135 LPELPALL----EYINADNNQL-TMLPELPTSL---EVLSVRNNQ-----LTFLPELPES 181
Query: 265 LQRLRLKGNKFLGEIPSSVGNLT----LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320
L+ L + N L +P+ NR+ IP ++ + L +
Sbjct: 182 LEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239
Query: 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355
N L+ I + ++ Y N
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 47/264 (17%), Positives = 77/264 (29%), Gaps = 79/264 (29%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
++ L + N L +P +L L+ N
Sbjct: 79 PPQITVLEITQNALI-SLPELPASLEYLDACD---------------------------N 110
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
+LS +P +L L + + NQL LP LE +N NNQ T +P
Sbjct: 111 RLS-TLPELPASLKHLDVDN---NQLT-MLPELPA----LLEYINADNNQLTM-LPELP- 159
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194
++L L+++ N + E+L L + S
Sbjct: 160 --TSLEVLSVRNNQLTFLPELPESLEAL-------------------------DVS---- 188
Query: 195 MEISINNFGGMLPESVG---NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
N LP + F N++ +IP + +L + L DN
Sbjct: 189 -----TNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPL 242
Query: 252 TGRILGSIGDLQKLQRLRLKGNKF 275
+ RI S+ F
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYF 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 9/151 (5%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLE----FLSAAVNQFVGQIPETLSELKRMRSI 69
L L V N L +P+ E F N+ IPE + L +I
Sbjct: 178 LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235
Query: 70 GFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI 129
N LS I S+ ++ P S P + + F
Sbjct: 236 ILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV---TAWFPENK 292
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLY 160
+ +S + N FS + L +
Sbjct: 293 QSDVSQIWHAFEHEEHANTFSAFLDRLSDTV 323
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 8e-22
Identities = 87/477 (18%), Positives = 145/477 (30%), Gaps = 58/477 (12%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
+ LS+LR L + N + F LE+L + N+
Sbjct: 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ--------------- 113
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLNFGNNQFTG 127
I ++SL LD N LP F L L L +F
Sbjct: 114 ----------NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV 187
+ +L + + + K E+L L N + S+
Sbjct: 161 -LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-SVN 218
Query: 188 NASRLEMMEISINNFGGMLPESV---GNLSTRLKRFTVGNNQLFGNIPSGLGNLVN---L 241
L++ I +N+ + L T+ + + L +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278
Query: 242 ELLDLGDNQFTGRILGSIGD-----LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
E L++ + T RI L+ L +K FL + +
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF 356
+ + L+ + N T ++ L L L L +N L
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-TLILQRNGLKN-FFKVA 396
Query: 357 GILKNLGVLDVSENKL----SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSL-RGIQ 411
+ KN+ L+ + L S + + L ++ N S F L ++
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVK 453
Query: 412 NLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGN 465
LDL N + IPK + LQ LN++SN + VP GVF ++ I L N
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP-DGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 60/377 (15%), Positives = 111/377 (29%), Gaps = 34/377 (9%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N +S I LS L +L N+++ SL + +LE L+ +N+ I
Sbjct: 62 NSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISCC- 118
Query: 134 SNASNLMRLTIQKNGFS--GKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
++L L + N F NL KL + S + + +
Sbjct: 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPS-GLGNLVNLELLDLGDNQ 250
L I S+ +T + N LF + + L +L+L ++ N
Sbjct: 178 LVSYHIKGGETE-----SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232
Query: 251 FTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKC 310
+ L +G L + F
Sbjct: 233 E------NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF-----------QFFWP 275
Query: 311 KNLILLDLSNNNLTGTIPTEVIGLSSLSI----YLDLSKNQLNGPLPSNFGILKNLGVLD 366
+ + L++ N +T I E S ++ + + + + + +
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426
+S + S L N F ++ S+L+ +Q L L RN L K
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394
Query: 427 YFENFFFLQNLNLSSNH 443
+ +L
Sbjct: 395 VALMTKNMSSLETLDVS 411
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 9e-11
Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 17/259 (6%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLL 289
+P L + L L N + + I L +L+ LRL N+ + + V L
Sbjct: 46 VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDL 102
Query: 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIG-LSSLSIYLDLSKNQL 348
L NRL+ +I +L LDLS N+ + G L+ L+ +L LS +
Sbjct: 103 EYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLT-FLGLSAAKF 158
Query: 349 -NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGS-CVRLEQLVMNGNFFQGNIPSSFSS 406
L + + +LD+ + G SL + LV + N S
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ--VNMS 216
Query: 407 LRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGND 466
+ + +L LS L+ + F + + ++ + +
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT----LQHIETTWKCSVKLFQF 272
Query: 467 NLCGGISELHLSTCSIKES 485
+ L++ +I E
Sbjct: 273 FWPRPVEYLNIYNLTITER 291
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 14/171 (8%)
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361
+P L L LS N+++ ++ LS L L LS N++ F ++
Sbjct: 45 HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELR-VLRLSHNRIRSLDFHVFLFNQD 101
Query: 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG-NIPSSFSSLRGIQNLDLSRNNL 420
L LDVS N+L I L L ++ N F + F +L + L LS
Sbjct: 102 LEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 421 SGRIPKYFENFFFLQ----NLNLSSNHFEGEVPIKGVFSNSSAISLDGNDN 467
++ L L+L S H +G N++ + L + N
Sbjct: 159 R-QLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-20
Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 9/234 (3%)
Query: 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGD 248
S + + NN + ++ +L L+ +G N + I G L +L L+L D
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132
Query: 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLS-FEGNRLEGSIPSS 306
N T G+ L KL+ L L+ N + IPS + L L E +LE +
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 307 LGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366
NL L+L N+ +P + L L L++S N P +F L +L L
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE-ELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
V +++S N+ L +L + N F+ LR + L L N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 17/249 (6%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
+ +P G+ N L+L +N + L L+ L+L N + +I
Sbjct: 62 TRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA 118
Query: 284 -GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEV-IGLSSLSIY 340
L L TL N L IPS + L L L NN + +IP+ + SL +
Sbjct: 119 FNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSL-MR 175
Query: 341 LDLSK-NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399
LDL + +L F L NL L++ + ++P +L V LE+L M+GN F
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI 233
Query: 400 IPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSA 459
P SF L ++ L + + +S F+ L LNL+ N+ +P +F+
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP-HDLFTPLRY 291
Query: 460 ---ISLDGN 465
+ L N
Sbjct: 292 LVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 58/267 (21%), Positives = 101/267 (37%), Gaps = 43/267 (16%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
S+ L+ N +Q + +D L +LEVL G N + + ++L L + N
Sbjct: 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 148 GFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGM 205
+ +PS E L KL+ + N + + I F +
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIES----------------------IPSYAFNRV 170
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQK 264
L R +G + I G L NL+ L+LG + ++ L
Sbjct: 171 ---------PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVG 219
Query: 265 LQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNL 323
L+ L + GN EI L+ L L +++ ++ +L+ L+L++NNL
Sbjct: 220 LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Query: 324 TGTIPTEVI-GLSSLSIYLDLSKNQLN 349
+ ++P ++ L L L L N N
Sbjct: 279 S-SLPHDLFTPLRYLV-ELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 57/259 (22%), Positives = 91/259 (35%), Gaps = 38/259 (14%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE-TLSELKRMRSIGFGANKL 76
R L + NN+ +F +L LE L N + QI + L + ++ N L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWL 135
Query: 77 SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG-NNQFTGPIPASISN 135
+ + LS L L N ++ S+PS +P+L L+ G + +
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 136 ASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM 195
NL L + +P+L L L+ + S NH
Sbjct: 195 LFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP---------------------- 231
Query: 196 EISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGR 254
EI +F G+ + LK+ V N+Q+ I L +L L+L N +
Sbjct: 232 EIRPGSFHGL---------SSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 255 ILGSIGDLQKLQRLRLKGN 273
L+ L L L N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 7/167 (4%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
G L+ L TL + N L+ +F LS L L N + + +
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 69 IGFG-ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
+ G KL + L +L L+ + ++ +P+ L LE L N F
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELEMSGNHFPE 232
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHL 172
P S S+L +L + + S + + L L ++ + N+L
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL 278
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
+L G L L+ L + N+ ++P+ L LE L + N F P +
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
L ++ + +++S + L+SL L+ N L SLP D+ L L L+
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297
Query: 121 GNNQF 125
+N +
Sbjct: 298 HHNPW 302
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-20
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 16/242 (6%)
Query: 215 TRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGN 273
L+ + +N + I +L +LE LDL N + L L L L GN
Sbjct: 76 VNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Query: 274 KFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEV 331
+ +S+ +LT L L I L L++ ++L + +
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKS 193
Query: 332 I-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG----EIP----NSLGS 382
+ + ++S +L L Q L + ++ L++ + L E+ NSL
Sbjct: 194 LKSIQNVS-HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252
Query: 383 CVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
+ + + + + G+ L+ SRN L F+ LQ + L +N
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Query: 443 HF 444
+
Sbjct: 312 PW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 6e-17
Identities = 55/295 (18%), Positives = 103/295 (34%), Gaps = 43/295 (14%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
++ LD N++ + + NL+ L +N TI+++
Sbjct: 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN----------------TIEED 94
Query: 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207
FS L L+ + S N+L N L S S L + + N + +
Sbjct: 95 SFSS-------LGSLEHLDLSYNYLSN-----LS-SSWFKPLSSLTFLNLLGNPYKTLGE 141
Query: 208 ESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266
S+ + T+L+ VGN F I L LE L++ + S+ +Q +
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201
Query: 267 RLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEG----SIPS----SLGKCKNLILLD 317
L L + + + + L L+ + + SL K +
Sbjct: 202 HLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 318 LSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372
+++ +L + + +S L L+ S+NQL F L +L + + N
Sbjct: 261 ITDESLF-QVMKLLNQISGLL-ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 8e-16
Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 31/227 (13%)
Query: 223 GNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS 282
G++ +IPSGL ++ LDL +N+ T + LQ L L N + I
Sbjct: 38 GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEED 94
Query: 283 VGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV-IGLSSLSIYL 341
F +L LDLS N L+ + + LSSL+ +L
Sbjct: 95 S----------FSSLG-------------SLEHLDLSYNYLS-NLSSSWFKPLSSLT-FL 129
Query: 342 DLSKNQLNG-PLPSNFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLVMNGNFFQGN 399
+L N S F L L +L V +I LE+L ++ + Q
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189
Query: 400 IPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446
P S S++ + +L L + + + ++ L L +
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 42/264 (15%), Positives = 92/264 (34%), Gaps = 24/264 (9%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N+++ + +L L N + ++ D +L +LE L+ N + + +S
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSW 119
Query: 134 -SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSS--LVNAS 190
S+L L + N +L ++ L L G D + +
Sbjct: 120 FKPLSSLTFLNLLGN----PYKTLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLT 174
Query: 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDN 249
LE +EI ++ P+S+ ++ + + Q + ++E L+L D
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDT 232
Query: 250 QFTGRILGSI--------GDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
+ + +++ L ++ + ++ L L F N+L+
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK- 290
Query: 302 SIPSS-LGKCKNLILLDLSNNNLT 324
S+P + +L + L N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 41/247 (16%), Positives = 82/247 (33%), Gaps = 10/247 (4%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
L L+ L + N ++ SF +L SLE L + N L +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128
Query: 69 IGFGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
+ N S++ +L+ L +L + L LE L +
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVS- 184
P S+ + N+ L + + ++ ++ + L +L
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247
Query: 185 -SLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLE 242
SL+ ++I+ + + + + + + L NQL ++P G L +L+
Sbjct: 248 NSLIKKFTFRNVKITDESL-FQVMKLLNQI-SGLLELEFSRNQLK-SVPDGIFDRLTSLQ 304
Query: 243 LLDLGDN 249
+ L N
Sbjct: 305 KIWLHTN 311
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 24/241 (9%)
Query: 215 TRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGSI--GDLQKLQRLRLK 271
L + NN++ I G LV LE L L NQ L + + LQ LR+
Sbjct: 76 KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQ-----LKELPEKMPKTLQELRVH 129
Query: 272 GNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSI--PSSLGKCKNLILLDLSNNNLTGTIP 328
N+ + ++ SV L + + N L+ S + K L + +++ N+T TIP
Sbjct: 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187
Query: 329 TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388
+ SL+ L L N++ ++ L NL L +S N +S SL + L +
Sbjct: 188 QGL--PPSLT-ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG------RIPKYFENFFFLQNLNLSSN 442
L +N N +P + + IQ + L NN+S P Y ++L SN
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
Query: 443 H 443
Sbjct: 304 P 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 62/328 (18%), Positives = 113/328 (34%), Gaps = 55/328 (16%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKL 162
+P D+ P+ +L+ NN+ T I+ F NL L
Sbjct: 45 KVPKDLP---PDTALLDLQNNKIT----------------EIKDGDFK-------NLKNL 78
Query: 163 QRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTV 222
+ N + + +LE + +S N L E + L+ V
Sbjct: 79 HTLILINNKISKISPG------AFAPLVKLERLYLSKNQ----LKELPEKMPKTLQELRV 128
Query: 223 GNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRIL--GSIGDLQKLQRLRLKGNKFLGEI 279
N++ + L + +++LG N + G+ ++KL +R+ + I
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI 186
Query: 280 PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI 339
P G L L +GN++ +SL NL L LS N+++ + L
Sbjct: 187 PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR- 243
Query: 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS-------LGSCVRLEQLVMN 392
L L+ N+L +P K + V+ + N +S I ++ + +
Sbjct: 244 ELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLF 301
Query: 393 GNFFQGNI--PSSFSSLRGIQNLDLSRN 418
N Q PS+F + + L
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 61/298 (20%), Positives = 108/298 (36%), Gaps = 33/298 (11%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
+LLD N++ + L NL L NN+ + P + + L RL + KN
Sbjct: 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV----NASRLEMMEISINNFG 203
++P + LQ + N + K ++ ++ + L+ I F
Sbjct: 111 QLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 204 GMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ 263
GM +L + + + IP GL +L L L N+ T S+ L
Sbjct: 169 GM---------KKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216
Query: 264 KLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNN 322
L +L L N + + + N L L N+L +P L K + ++ L NNN
Sbjct: 217 NLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274
Query: 323 LTGTIPTEVI-------GLSSLSIYLDLSKNQLN-GPLPSN-FGILKNLGVLDVSENK 371
++ I + +S S + L N + + + F + + + K
Sbjct: 275 IS-AIGSNDFCPPGYNTKKASYS-GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 51/300 (17%), Positives = 95/300 (31%), Gaps = 48/300 (16%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
G +L L TL + N +S P +F L LE L + NQ ++PE +
Sbjct: 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------- 119
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT-G 127
+L L N++ + + L + V+ G N
Sbjct: 120 ------------------PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 128 PIPASI-SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186
I L + I + +P L + N + + L+
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKITKVDAASLK----- 213
Query: 187 VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDL 246
+ L + +S N+ + S+ N L+ + NN+L +P GL + ++++ L
Sbjct: 214 -GLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL-VKVPGGLADHKYIQVVYL 270
Query: 247 GDNQFTG------RILGSIGDLQKLQRLRLKGNKF-LGEIPSSV-GNLTLLFTLSFEGNR 298
+N + G + L N EI S + + + +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 15/177 (8%)
Query: 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV- 331
+ L ++P + T L + N++ KNL L L NN ++ I
Sbjct: 40 DLGLEKVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAF 96
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
L L L LSKNQL LP + K L L V EN+++ + ++ + +
Sbjct: 97 APLVKLE-RLYLSKNQLKE-LPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 392 NGNFFQGNI--PSSFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFLQNLNLSSNHFE 445
N + + +F ++ + + ++ N++ IP+ + L L+L N
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKIT 205
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 18/179 (10%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ S+ L +P L + LDL N++ +F LKNL L + NK+S
Sbjct: 36 VQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFL 434
P + V+LE+L ++ N + +L Q L + N ++ ++ K F +
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHENEIT-KVRKSVFNGLNQM 147
Query: 435 QNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGN------DNLCGGISELHLSTCSIKE 484
+ L +N + G F I + L ++ELHL I +
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+L V+ S+ L ++P L L + N F +L+ + L L N +
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465
S P F L+ L LS N + E+P + + + + N
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELP-EKMPKTLQELRVHEN 131
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 26/279 (9%)
Query: 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGD 248
++++ N+ + + L L + NN++ I L L+ L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISK 111
Query: 249 NQFTGRILGSI--GDLQKLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRL-EGSIP 304
N I L LR+ N+ + ++P V L + + GN L
Sbjct: 112 NHLV-----EIPPNLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364
L L +S LT IP ++ +L+ L L N++ + L
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPKDL--PETLN-ELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRI 424
L + N++ SL L +L ++ N +P+ L+ +Q + L NN++ ++
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KV 279
Query: 425 P-------KYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
+ + ++L +N F
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 5e-18
Identities = 64/331 (19%), Positives = 114/331 (34%), Gaps = 62/331 (18%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENLY 160
++P +I P+ +L+ NN + +L L + N S K+ L
Sbjct: 47 AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR 102
Query: 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRF 220
KLQ++ S NHL +P NL + L
Sbjct: 103 KLQKLYISKNHLVE-------------------------------IPP---NLPSSLVEL 128
Query: 221 TVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRILGS-IGDLQKLQRLRLKGNKFLGE 278
+ +N++ +P G L N+ +++G N D KL LR+ K L
Sbjct: 129 RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTG 186
Query: 279 IPSSVGNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEV-IGLSS 336
IP L L + N+++ +I L + L L L +N + I L +
Sbjct: 187 IPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPT 242
Query: 337 LSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS-------LGSCVRLEQL 389
L L L N+L+ +P+ LK L V+ + N ++ ++ + +
Sbjct: 243 LR-ELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299
Query: 390 VMNGNFFQGNI--PSSFSSLRGIQNLDLSRN 418
+ N P++F + +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 9e-15
Identities = 61/298 (20%), Positives = 101/298 (33%), Gaps = 34/298 (11%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
+LLD N + L D L +L L NN+ + + S L +L I KN
Sbjct: 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV----NASRLEMMEISINNFG 203
P+L L + N + K + ++ + LE F
Sbjct: 113 HLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 204 GMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ 263
G+ +L + +L IP L L L L N+ L +
Sbjct: 171 GL----------KLNYLRISEAKL-TGIPKDL--PETLNELHLDHNKIQAIELEDLLRYS 217
Query: 264 KLQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNN 322
KL RL L N+ + I + L L L + N+L +P+ L K L ++ L NN
Sbjct: 218 KLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 323 LTGTIPTEV-------IGLSSLSIYLDLSKNQLNGPL--PSNFGILKNLGVLDVSENK 371
+T + + + + + L N + P+ F + + + K
Sbjct: 276 IT-KVGVNDFCPVGFGVKRAYYN-GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 53/299 (17%), Positives = 88/299 (29%), Gaps = 71/299 (23%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
L KL+ L + N+L EIP SSL L N+ S L+ M
Sbjct: 95 EKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 69 IGFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
I G N L + ++ L+ L +L +P D L L+ +N+
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD---LPETLNELHLDHNKIQ- 206
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV 187
I+ KL R+ N +
Sbjct: 207 ---------------AIELEDLLR-------YSKLYRLGLGHNQIRM------------- 231
Query: 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLG 247
I + + L+ + NN+L +P+GL +L L+++ L
Sbjct: 232 ---------IENGSLSFL---------PTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLH 272
Query: 248 DNQFTG------RILGSIGDLQKLQRLRLKGNKF-LGEIPSSV-GNLTLLFTLSFEGNR 298
N T +G + L N E+ + +T + F +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 4e-18
Identities = 57/320 (17%), Positives = 122/320 (38%), Gaps = 35/320 (10%)
Query: 152 KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVG 211
++ + + + + + D + L + ++ + + ++ +SV
Sbjct: 13 QIFPDDAFAETIKDNLKKKSV-----TDAVTQNELNS---IDQIIANNSDI-----KSVQ 59
Query: 212 NLS--TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLR 269
+ + + + N+L +I L NL NL L L +N+ L S+ DL+KL+ L
Sbjct: 60 GIQYLPNVTKLFLNGNKL-TDI-KPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLS 115
Query: 270 LKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT 329
L+ N + +I + + +L L +L N++ + + L + L L L +N ++
Sbjct: 116 LEHNG-ISDI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS----- 166
Query: 330 EVIGLSSLS--IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387
+++ L+ L+ L LSKN ++ LKNL VL++ + + N + V
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 388 QLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447
+ P S + ++ + F + + + F G
Sbjct: 225 TVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR-FHGR 281
Query: 448 VPIKGVFSNSSAISLDGNDN 467
V + + +DG
Sbjct: 282 VTQPLKEVYTVSYDVDGTVI 301
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 1e-16
Identities = 54/308 (17%), Positives = 112/308 (36%), Gaps = 25/308 (8%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
N T + + +++ ++ + V ++ L + ++ + N
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 76
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI 231
L D++ +++L N L + E I + S+ +L +LK ++ +N + +I
Sbjct: 77 L-----TDIKPLTNLKNLGWLFLDENKIKDL-----SSLKDL-KKLKSLSLEHNGI-SDI 124
Query: 232 PSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291
+GL +L LE L LG+N+ T + + L KL L L+ N+ + +I + LT L
Sbjct: 125 -NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQN 179
Query: 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP 351
L N + S +L KNL +L+L + L + + + +
Sbjct: 180 LYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411
+ S+ G + +V + S + F
Sbjct: 238 IISDDGDYEK---PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294
Query: 412 NLDLSRNN 419
++D +
Sbjct: 295 DVDGTVIK 302
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 6e-15
Identities = 52/320 (16%), Positives = 107/320 (33%), Gaps = 27/320 (8%)
Query: 58 ETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF--TLPNL 115
++ + + L+S+ + + + + LPN+
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI-----KSVQGIQYLPNV 67
Query: 116 EVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNG 175
L N+ T P ++N NL L + +N + SL++L KL+ +S N +
Sbjct: 68 TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGI--- 121
Query: 176 EKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL 235
D+ + L L + I + + L T+L ++ +NQ+ +I L
Sbjct: 122 --SDINGLVHLPQLESLYLGNNKITDI-----TVLSRL-TKLDTLSLEDNQI-SDI-VPL 171
Query: 236 GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295
L L+ L L N + L ++ L+ L L L + L + + NL + T+
Sbjct: 172 AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229
Query: 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355
L S + T + ++ ++ PL
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEV 289
Query: 356 FGILKNLGVLDVSENKLSGE 375
+ + ++ + +G
Sbjct: 290 YTVSYDVDGTVIKTKVEAGT 309
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 5e-12
Identities = 44/343 (12%), Positives = 104/343 (30%), Gaps = 55/343 (16%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ ++ + +++ + L+S++ + A + + + + + L + +
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFL 72
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF--TLPNLEVLNFGNNQFTGPI 129
NKL+ P + NL +L L N++ D+ L L+ L+ +N +
Sbjct: 73 NGNKLTDIKPLT--NLKNLGWLFLDENKI-----KDLSSLKDLKKLKSLSLEHNGISDIN 125
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
+ + L L + N + + L L KL +S N + D+ ++ L
Sbjct: 126 G--LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLTK- 176
Query: 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDN 249
L+ + N + + L L NL++L+L
Sbjct: 177 ---------------------------LQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ 207
Query: 250 QFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS----VGNLTLLFTLSFEGNRLEGSIPS 305
+ + + +L ++ + S + + L N +
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267
Query: 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQL 348
+ K + T + I +
Sbjct: 268 PVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTR 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 1e-17
Identities = 59/322 (18%), Positives = 94/322 (29%), Gaps = 36/322 (11%)
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIP-ASISNASNLMRLTI 144
N S G+ ++ +LE L + I + +L RLT+
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75
Query: 145 QKNGFSGK----VPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN 200
+ + + + LQ ++ + G ++ + + L + +S
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 201 NFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI----L 256
L E L LK ++ + L LDL DN G
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194
Query: 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILL 316
LQ L L+ G + L L
Sbjct: 195 LCPLKFPTLQVLALRNAGM---------------------ETPSGVCSALAAARVQLQGL 233
Query: 317 DLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376
DLS+N+L S L+LS L G+ L VLD+S N+L
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLD-RN 289
Query: 377 PNSLGSCVRLEQLVMNGNFFQG 398
P S ++ L + GN F
Sbjct: 290 P-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-17
Identities = 54/276 (19%), Positives = 85/276 (30%), Gaps = 23/276 (8%)
Query: 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG---LGNLVNLELL 244
LE + ++ + + S LKR TV ++ I G + + L+ L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 245 DLGDNQFTGRILGSIGDLQ--KLQRLRLKGNKFLGEIPSSVGNLTLLFT----LSFEGNR 298
L + + TG + + L L L+ + L LS
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIP----TEVIGLSSLSIYLDLSKNQLN---GP 351
+ L LDLS+N G + +L L L + G
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAGMETPSGV 219
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGS-CVRLEQLVMNGNFFQGNIPSSFSSLRGI 410
+ L LD+S N L +L L ++ + + L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL--- 276
Query: 411 QNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446
LDLS N L R P + + NL+L N F
Sbjct: 277 SVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 9e-13
Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 21/283 (7%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSEL---K 64
V G S L + SL+ L+ + +I +
Sbjct: 36 VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95
Query: 65 RMRSIGFGANKLSGEIPFSIY-----NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
++ + +++G P + +L+ L+L + L + P L+VL+
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 120 FGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLE-----NLYKLQRVSFSLNHLGN 174
+ L L + N G+ + LQ ++ +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-- 213
Query: 175 GEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG 234
E + +L+ +++S N+ + ++L + L +P G
Sbjct: 214 -ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKG 271
Query: 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277
L L +LDL N+ S +L ++ L LKGN FL
Sbjct: 272 LPA--KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 25/236 (10%)
Query: 236 GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS---VGNLTLLFTL 292
G LL D + I L+RL ++ + I V ++ L L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 293 SFEGNRLEGSIPSSLGKC--KNLILLDLSNNNLTG--TIPTEVIGLSSLSI-YLDLSKNQ 347
+ E + G+ P L + +L +L+L N + E+ + L +++
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 348 LNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSL 407
+ L LD+S+N GE C P F +L
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-----------------PLKFPTL 203
Query: 408 RGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLD 463
+ + + SG LQ L+LS N S SL+
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 7e-08
Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQI-------PETLSELKRM 66
L+ L++ + +L L + N +G+ P L+ +
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
G SG L LD N L+ + + L LN
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176
+P + + L L + N PS + L ++ +S N + E
Sbjct: 267 Q-VPKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFLDSE 312
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL-SELKRM 66
P K +L L SG + L+ L + N ++
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
S+ L ++P + + LS+LD N+L PS LP + L+ N F
Sbjct: 256 NSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNPSPDE--LPQVGNLSLKGNPFL 309
Query: 127 GP 128
Sbjct: 310 DS 311
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-17
Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 11/236 (4%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRI-LGSIGDLQKLQRLR 269
+L +L I G +LE +++ N I +L KL +R
Sbjct: 27 DLPRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 270 LKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTI 327
++ L I NL L L ++ +P +LLD+ +N TI
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 328 PTEVI-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386
GLS S+ L L+KN + S F + + N L +
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204
Query: 387 EQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
L ++ +L+ ++ NL ++P E L +L+
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 48/226 (21%), Positives = 76/226 (33%), Gaps = 19/226 (8%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENLY 160
+PSD+ N L F + + S +L ++ I +N + + NL
Sbjct: 23 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 161 KLQRVSFS-LNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKR 219
KL + N+L + + N L+ + IS LP+ S +
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQ------NLPNLQYLLISNTGI-KHLPDVHKIHSLQKVL 132
Query: 220 FTVGNNQLFGNIPSGL--GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277
+ +N I G +L L N I S + +L L L N L
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE 191
Query: 278 EIPSSV-GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNN 321
E+P+ V + L R+ S+PS L K L N
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 273 NKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV 331
+ EIPS + N L F +L + +L +++S N++ I +V
Sbjct: 18 ESKVTEIPSDLPRNAI---ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74
Query: 332 -IGLSSLSIYLDLSK-NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN-SLGSCVRLEQ 388
L L + + K N L P F L NL L +S + +P+ ++
Sbjct: 75 FSNLPKLH-EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVL 132
Query: 389 LVMNGNFFQGNIPS-SFSSLRG-IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
L + N I SF L L L++N + I N L LNLS N
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 44/278 (15%), Positives = 81/278 (29%), Gaps = 59/278 (21%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
L L +F LE + +S+ + I
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIE-------------ISQNDVLEVIEADV---- 74
Query: 78 GEIPFS-IYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136
FS + L + + N L + + LPNL+ L N ++
Sbjct: 75 ----FSNLPKLHEIRIEKA--NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 137 SNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMME 196
+ L IQ N N++ ++R SF L + ++
Sbjct: 128 LQKVLLDIQDN---------INIHTIERNSF----------VGL--------SFESVILW 160
Query: 197 ISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRI 255
++ N + S N + + NN L +P+ +LD+ +
Sbjct: 161 LNKNGI-QEIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 256 LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLS 293
+ +L+KL+ K L ++ L L S
Sbjct: 219 SYGLENLKKLRARSTYNLKKLP----TLEKLVALMEAS 252
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPS-SFGNLSSLEFLSAAVNQFVGQIPE-TLSEL-KR 65
P +L L+ L + + +P + L N + I + L
Sbjct: 97 PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155
Query: 66 MRSIGFGANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQ 124
+ N + EI S +N L N L+ LP+D+ +L+ +
Sbjct: 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR 213
Query: 125 FTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLN 170
+ N L + K+P+LE L L S +
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNL---KKLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 42/183 (22%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ +T IP+ L +I L +L F +L +++S+N +
Sbjct: 14 FLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFL 434
I FS+L + + + + N I + F+N L
Sbjct: 70 IE-----------------------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106
Query: 435 QNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDN-------------LCGGISELHLSTCS 481
Q L +S+ + +P + + LD DN L L L+
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165
Query: 482 IKE 484
I+E
Sbjct: 166 IQE 168
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 7e-17
Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 233 SGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292
+G+ N++ L + + T I L L+RLR+ G + ++ LT L L
Sbjct: 60 TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPL 352
+ + SI + + + +DLS N I + L L L++ + ++
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK-SLNIQFDGVHD-- 173
Query: 353 PSNFGILKNLGVLDVSENKLSGE 375
L L + G+
Sbjct: 174 YRGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 9e-15
Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 16/188 (8%)
Query: 138 NLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197
+ + ++ S + + L ++ + ++ DL + N L + I
Sbjct: 24 AYLNGLLGQS--STANITEAQMNSLTYITLANINV-----TDLTGIEYAHNIKDLTINNI 76
Query: 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILG 257
N+ + L + L+R + + + L L +L LLD+ + IL
Sbjct: 77 HATNY-----NPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 258 SIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLD 317
I L K+ + L N + +I + L L +L+ + + + + L L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLY 187
Query: 318 LSNNNLTG 325
+ + G
Sbjct: 188 AFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 11/186 (5%)
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
LG + T I + + L + L + ++ + + + L+
Sbjct: 21 TFKAYLNGLLGQSS-TANI--TEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINN 75
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF 356
+ + NL L + ++T + GL+SL+ LD+S + + + +
Sbjct: 76 IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT-LLDISHSAHDDSILTKI 132
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
L + +D+S N +I L + L+ L + + + + L
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAF 189
Query: 417 RNNLSG 422
+ G
Sbjct: 190 SQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKNQLNGPLPSNFGILKNLG 363
+ + +L + L+N N+T ++ G+ L ++ + L NL
Sbjct: 39 TEAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLE 91
Query: 364 VLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423
L + ++ + +L L L ++ + +I + ++L + ++DLS N
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 424 IPKYFENFFFLQNLNLSSNH 443
I + L++LN+ +
Sbjct: 152 I-MPLKTLPELKSLNIQFDG 170
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 10/173 (5%)
Query: 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK 75
S + S + ++SL +++ A + ++ +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIH 77
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISN 135
+ P S LS+L L + ++ L +L +L+ ++ I I+
Sbjct: 78 ATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINT 134
Query: 136 ASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVN 188
+ + + NG + L+ L +L+ ++ + + D +
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV-----HDYRGIEDFPK 182
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ LS L L + +++ + + L+SL L + + I ++ L ++ SI
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF--TLPNLEVLNFGNNQFTG 127
N +I + L L L+ + + D P L L + G
Sbjct: 144 SYNGAITDIM-PLKTLPELKSLNIQFDGV-----HDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 68/425 (16%), Positives = 128/425 (30%), Gaps = 49/425 (11%)
Query: 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK 75
+ + S L++L L + + + +L + + +N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75
Query: 76 LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISN 135
++ + S ++L+ L N+L +L L L LN N+ T +S
Sbjct: 76 IT-TLDLS--QNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT---KLDVSQ 125
Query: 136 ASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM 195
L L +N + + + +L + LN + ++L +
Sbjct: 126 NPLLTYLNCARNTLT--EIDVSHNTQLTELDCHLNKKIT--------KLDVTPQTQLTTL 175
Query: 196 EISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI 255
+ S N + V L R N + + L + L LD N+ T
Sbjct: 176 DCSFNKITEL---DVSQN-KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEI- 227
Query: 256 LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLIL 315
+ L +L N L E+ S L+ L TL L I L LI
Sbjct: 228 --DVTPLTQLTYFDCSVNP-LTELDVS--TLSKLTTLHCIQTDLL-EID--LTHNTQLIY 279
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ +V + L LD + + L L ++ +L+ E
Sbjct: 280 FQAEGCRKIKEL--DVTHNTQLY-LLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-E 332
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435
+ + +L+ L Q SS + + N + + N
Sbjct: 333 LD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388
Query: 436 NLNLS 440
++
Sbjct: 389 AVSPD 393
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 61/404 (15%), Positives = 121/404 (29%), Gaps = 51/404 (12%)
Query: 42 LEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQ 101
AA + + +L + S+ + ++ ++ I L+ L+ L N +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNI- 76
Query: 102 GSLPSDIGFT-LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLY 160
+ + + NL L +N+ T ++ + L L N + S
Sbjct: 77 ----TTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVS--QNP 127
Query: 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRF 220
L ++ + N L + + + ++ E+ + + V T+L
Sbjct: 128 LLTYLNCARNTL-----------TEIDVSHNTQLTELDCHLNKKITKLDVTPQ-TQLTTL 175
Query: 221 TVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP 280
N++ + + L L+ N T + +L L NK L EI
Sbjct: 176 DCSFNKI-TELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNK-LTEID 228
Query: 281 SSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIY 340
V LT L N L + S L L +L I L+ +
Sbjct: 229 --VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL------EIDLTHNTQL 277
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
+ + L +LD ++ E+ L +L L +N +
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-EL 333
Query: 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
S +++L ++ L N +
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 70/411 (17%), Positives = 123/411 (29%), Gaps = 71/411 (17%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ L+ L L NN++ + ++L +L+ N+ L+ L
Sbjct: 60 IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNK--------LTNL-------- 100
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
+ L+ L+ L+ N+L S P L LN N T
Sbjct: 101 -----------DVTPLTKLTYLNCDTNKLTKLDVSQ----NPLLTYLNCARNTLT---EI 142
Query: 132 SISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASR 191
+S+ + L L N + +L + S N + + + ++ L N
Sbjct: 143 DVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL-NCDT 200
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251
+ ++ +N +L +N+L I + L L D N
Sbjct: 201 NNITKLDLNQN------------IQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPL 245
Query: 252 TGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK 311
T + L KL L L EI + + T L EG R + +
Sbjct: 246 TEL---DVSTLSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNT 297
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371
L LLD +T + + L YL L+ +L L L L
Sbjct: 298 QLYLLDCQAAGIT-ELD--LSQNPKLV-YLYLNNTELTE-LD--VSHNTKLKSLSCVNAH 350
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422
+ + S+G L + ++ + + G
Sbjct: 351 IQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 73/373 (19%), Positives = 136/373 (36%), Gaps = 50/373 (13%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ L+KL L N L+ L +L+ A N +I +S ++ +
Sbjct: 102 VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDC 155
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLNFGNNQFTGPIP 130
NK ++ + + L+ LD N++ +++ + L LN N T
Sbjct: 156 HLNKKITKLDVT--PQTQLTTLDCSFNKI-----TELDVSQNKLLNRLNCDTNNITKL-- 206
Query: 131 ASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNAS 190
++ L L N + + L +L S+N L + L +++L +
Sbjct: 207 -DLNQNIQLTFLDCSSNKLTE--IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL-HCI 262
Query: 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQ 250
+ +++EI + + T+L F + + + + L LLD
Sbjct: 263 QTDLLEIDLTHN------------TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG 308
Query: 251 FTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKC 310
T + KL L L + L E+ V + T L +LS ++ S +GK
Sbjct: 309 ITE---LDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKI 360
Query: 311 KNLILLDLSNNNLTGTIPTEVIGLSSLSI-----YLDLSKNQLNGPLPSNFGILKNLGVL 365
L + T+P E + +SL+I LD N +N P + G+ +
Sbjct: 361 PALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVY-DQATN 417
Query: 366 DVSENKLSGEIPN 378
++ LS + P
Sbjct: 418 TITWENLSTDNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 23/229 (10%)
Query: 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFL 276
++ L L LD ++ T + I L L +L N +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN-I 76
Query: 277 GEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSS 336
+ + T L L+ + N+L ++ + L L+ N LT ++ L+
Sbjct: 77 TTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLT- 130
Query: 337 LSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFF 396
YL+ ++N L + L LD NK ++ + +L L + N
Sbjct: 131 ---YLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182
Query: 397 QGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
S + + L+ NN++ ++ L L+ SSN
Sbjct: 183 TE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 23/264 (8%)
Query: 179 DLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNL 238
+ +L NA ++ + ++ + + +L + + + I G+ L
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTD-----TVTQADL-DGITTLSAFGTGV-TTI-EGVQYL 62
Query: 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
NL L+L DNQ T L + +L K+ L L GN + S++ L + TL +
Sbjct: 63 NNLIGLELKDNQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQ 118
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI 358
+ + + L NL +L L N +T P GL++L YL + Q++ +
Sbjct: 119 I--TDVTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQ-YLSIGNAQVSDL--TPLAN 171
Query: 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418
L L L +NK+S +I L S L ++ + N S ++ + + L+
Sbjct: 172 LSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQ 227
Query: 419 NLSGRIPKYFENFFFLQNLNLSSN 442
++ + Y N + S
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSG 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 54/283 (19%), Positives = 115/283 (40%), Gaps = 25/283 (8%)
Query: 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMR 141
F L++ + + + ++ L + L+ T + +NL+
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTIEG--VQYLNNLIG 67
Query: 142 LTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINN 201
L ++ N + + L+NL K+ + S N L ++ ++ L + ++ ++++
Sbjct: 68 LELKDNQIT-DLAPLKNLTKITELELSGNPL-----KNVSAIAGLQS---IKTLDLTSTQ 118
Query: 202 FGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGD 261
+ + L + L+ + NQ+ NI S L L NL+ L +G+ Q + L + +
Sbjct: 119 ITDV--TPLAGL-SNLQVLYLDLNQI-TNI-SPLAGLTNLQYLSIGNAQVSD--LTPLAN 171
Query: 262 LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN 321
L KL L+ NK + +I S + +L L + + N++ S L NL ++ L+N
Sbjct: 172 LSKLTTLKADDNK-ISDI-SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQ 227
Query: 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364
+T L ++ S + S+ G + +
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 16/193 (8%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
L +L+K+ L + N L S+ L S++ L Q P L+ L ++ +
Sbjct: 81 LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF--TLPNLEVLNFGNNQFTGPI 129
N+++ P + L++L L Q+ SD+ L L L +N+ +
Sbjct: 137 DLNQITNISPLA--GLTNLQYLSIGNAQV-----SDLTPLANLSKLTTLKADDNKISDIS 189
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
P +++ NL+ + ++ N S V L N L V+ + + N +
Sbjct: 190 P--LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
Query: 190 SRLEMMEISINNF 202
I+
Sbjct: 247 KGPSGAPIAPATI 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 8e-15
Identities = 46/263 (17%), Positives = 99/263 (37%), Gaps = 24/263 (9%)
Query: 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK 274
+ + + L +++ + ++ + I L + +L L GNK
Sbjct: 24 AETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK 79
Query: 275 FLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGL 334
L +I + NL L L + N+++ + SSL K L L L +N + +++ GL
Sbjct: 80 -LTDI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI-----SDINGL 130
Query: 335 SSLS--IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
L L L N++ + L L L + +N++S +I L +L+ L ++
Sbjct: 131 VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLS 186
Query: 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452
N + + + L+ + L+L + + N + + V +
Sbjct: 187 KN--HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPEI 241
Query: 453 VFSNSSAISLDGNDNLCGGISEL 475
+ + + +L +E+
Sbjct: 242 ISDDGDYEKPNVKWHLPEFTNEV 264
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 48/274 (17%), Positives = 103/274 (37%), Gaps = 23/274 (8%)
Query: 133 ISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRL 192
+ ++ ++K + + L + ++ + + + ++ + L N +
Sbjct: 20 DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI-----KSVQGIQYLPN---V 70
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFT 252
+ ++ N + + + NL L + N++ S L +L L+ L L N +
Sbjct: 71 TKLFLNGNKLTDI--KPLANL-KNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS 125
Query: 253 GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKN 312
+ + L +L+ L L NK + +I + + LT L TLS E N++ I L
Sbjct: 126 --DINGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTK 179
Query: 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372
L L LS N+++ + GL +L + L+L + ++ L + ++ L
Sbjct: 180 LQNLYLSKNHISDL--RALAGLKNLDV-LELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Query: 373 SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS 406
S + + F + F
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 270
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 38/268 (14%), Positives = 91/268 (33%), Gaps = 51/268 (19%)
Query: 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIG 70
+ ++ + +++ + L+S++ + A + + + + + L + +
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLF 74
Query: 71 FGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF--TLPNLEVLNFGNNQFTGP 128
NKL+ P + NL +L L N++ D+ L L+ L+ +N +
Sbjct: 75 LNGNKLTDIKPLA--NLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLEHNGISDI 127
Query: 129 IPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVN 188
+ + L L + N + + L L KL +S N + D+ ++ L
Sbjct: 128 NG--LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLTK 179
Query: 189 ASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGD 248
L+ + N + + L L NL++L+L
Sbjct: 180 ----------------------------LQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209
Query: 249 NQFTGRILGSIGDLQKLQRLRLKGNKFL 276
+ + + +L ++ +
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 16/192 (8%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ L + L ++ N L+ +I NL +L +L N+ V + +L +LK+++S+
Sbjct: 64 IQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSL 119
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF--TLPNLEVLNFGNNQFTGPI 129
N +S +L L L N++ +DI L L+ L+ +NQ + +
Sbjct: 120 EHNGISDINGLV--HLPQLESLYLGNNKI-----TDITVLSRLTKLDTLSLEDNQISDIV 172
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
P ++ + L L + KN S + +L L L + N + +
Sbjct: 173 P--LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229
Query: 190 SRLEMMEISINN 201
+ ++
Sbjct: 230 KNTDGSLVTPEI 241
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 15/141 (10%)
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364
S I +L ++T + L+S+ + + + + L N+
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSID-QIIANNSDIKS--VQGIQYLPNVTK 72
Query: 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP--SSFSSLRGIQNLDLSRNNLSG 422
L ++ NKL+ +I L + L L ++ N + SS L+ +++L L N +S
Sbjct: 73 LFLNGNKLT-DIKP-LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS- 125
Query: 423 RIPKYFENFFFLQNLNLSSNH 443
I + L++L L +N
Sbjct: 126 DING-LVHLPQLESLYLGNNK 145
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 36/242 (14%)
Query: 209 SVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDNQFTGRI-LGSIGDLQKLQ 266
+ +L + + L IPS NL N+ + + + ++ S +L K+
Sbjct: 25 RIPSLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83
Query: 267 RLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIP--SSLGKCKNLILLDLSNNNL 323
+ ++ + L I L LL L L+ P + + +L++++N
Sbjct: 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142
Query: 324 TGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 382
+IP GL + ++ L L N + L + +++NK I
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVID----- 196
Query: 383 CVRLEQLVMNGNFFQGNIPSSFSSLR-GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSS 441
+F + G LD+S+ +++ +P + L+ L +
Sbjct: 197 ------------------KDAFGGVYSGPSLLDVSQTSVT-ALP--SKGLEHLKELIARN 235
Query: 442 NH 443
Sbjct: 236 TW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 43/239 (17%), Positives = 69/239 (28%), Gaps = 58/239 (24%)
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI-SNASNLMRLTI 144
NL ++S + ++ L S + L + + N + I L L I
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 145 QKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGG 204
G P L +Y ++EI+ N +
Sbjct: 113 FNTGLK-MFPDLTKVYSTD---------------------------IFFILEITDNPYMT 144
Query: 205 MLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQK 264
+P N GL N L L +N FT + G + K
Sbjct: 145 SIPV---------------------NAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGTK 180
Query: 265 LQRLRLKGNKFLGEIPSSV--GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN 321
L + L NK+L I G + L + ++PS ++L L N
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 51/186 (27%), Positives = 68/186 (36%), Gaps = 11/186 (5%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+L + N L+ + L L L+L + T L G L L L L
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLS 85
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTE 330
N+ L +P L L L NRL S+P L L L N L T+P
Sbjct: 86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPG 142
Query: 331 V-IGLSSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388
+ L L L+ N L LP+ L+NL L + EN L IP L
Sbjct: 143 LLTPTPKLE-KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199
Query: 389 LVMNGN 394
++GN
Sbjct: 200 AFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 54/197 (27%), Positives = 78/197 (39%), Gaps = 14/197 (7%)
Query: 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI 332
+ L +P + L N L ++L L L+L LT + +
Sbjct: 19 KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG- 74
Query: 333 GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
L L LDLS NQL LP L L VLDVS N+L+ +L L++L +
Sbjct: 75 TLPVLG-TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 393 GNFFQGNIPSS-FSSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNLSSNHFEGEVPI 450
GN + +P + ++ L L+ NNL+ +P L L L N +P
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IP- 188
Query: 451 KGVFSNSS--AISLDGN 465
KG F + L GN
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371
+ + ++ NLT +P L + L LS+N L + L L++ +
Sbjct: 11 SHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431
L+ ++ G+ L L ++ N Q ++P +L + LD+S N L+
Sbjct: 67 LT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 432 FFLQNLNLSSNH 443
LQ L L N
Sbjct: 124 GELQELYLKGNE 135
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 9/158 (5%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
L + N L ++ + L L+ + + L + ++ N+L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 78 GEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI-SNA 136
+P L +L++LD N+L SLP L L+ L N+ +P + +
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT 147
Query: 137 SNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHL 172
L +L++ N + ++P+ L L L + N L
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 7e-08
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 8/148 (5%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLS 61
N L L ++L L + L+ ++ G L L L + NQ +P
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQ 97
Query: 62 ELKRMRSIGFGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
L + + N+L+ +P L L L N+L+ +LP + P LE L+
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 121 GNNQFTGPIPASI-SNASNLMRLTIQKN 147
NN T +PA + + NL L +Q+N
Sbjct: 156 ANNNLTE-LPAGLLNGLENLDTLLLQEN 182
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 5/136 (3%)
Query: 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFG 72
G+L L TL + N L +P L +L L + N+ L L ++ +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 73 ANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA 131
N+L +P + L L N L LP+ + L NL+ L N IP
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 132 SISNASNLMRLTIQKN 147
+ L + N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
+P +L L L V FN L+ + L L+ L N+ P L+ ++
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 68 SIGFGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123
+ N L+ E+P + L +L L N L ++P F L N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGN 205
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 9e-14
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 9/182 (4%)
Query: 265 LQRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNN 322
++L L+ NK L +PS LT L L N+L+ ++P+ + + KNL L +++N
Sbjct: 39 TKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96
Query: 323 LTGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSL 380
L +P V L +L+ L L +NQL LP F L L L + N+L
Sbjct: 97 LQ-ALPIGVFDQLVNLA-ELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 381 GSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440
L++L + N + +F L ++ L L N L F++ L+ L L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 441 SN 442
N
Sbjct: 214 EN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 58/257 (22%), Positives = 86/257 (33%), Gaps = 81/257 (31%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
+ L + N LS +F L+ L L N+ ++++ G
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--------------LQTLPAGI---- 80
Query: 78 GEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNAS 137
F L +L L N+LQ +LP + L NL L NQ +P +
Sbjct: 81 ----FK--ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRV---- 128
Query: 138 NLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197
F L KL +S N L +
Sbjct: 129 -----------FDS-------LTKLTYLSLGYNELQS----------------------- 147
Query: 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRIL 256
LP+ V + T LK + NNQL +P G L L+ L L +NQ
Sbjct: 148 --------LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 257 GSIGDLQKLQRLRLKGN 273
G+ L+KL+ L+L+ N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
L+KLR L ++ N L F L +LE L N+ +L +
Sbjct: 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 69 IGFGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
+ N+L +P ++ +L+ L+ L N+LQ SLP + L +L+ L NNQ
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171
Query: 128 PIPASI-SNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLN 170
+P + L L + N +VP + ++L KL+ + N
Sbjct: 172 -VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 13/163 (7%)
Query: 265 LQRLRLKGNKFLGEIPSSV--GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNN 321
L L N L + + LT L +L N L I S + NL LDLS+N
Sbjct: 41 TALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98
Query: 322 NLTGTIPTEV-IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN-- 378
+L T+ + L +L L L N + + F + L L +S+N++S P
Sbjct: 99 HLH-TLDEFLFSDLQALE-VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 379 --SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419
+L L ++ N + + L L +N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 5e-12
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVI--GLSSLSIYLDLSKNQLNGPLPSNFGIL 359
++P SL LLDLS+NNL+ + E L++L L LS N LN F +
Sbjct: 32 NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLH-SLLLSHNHLNFISSEAFVPV 87
Query: 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419
NL LD+S N L LE L++ N ++F + +Q L LS+N
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 420 LSGRIPKYFENFF---FLQNLNLSSNHFEGEVPIKGVFSNSSA-----ISLDGN 465
+S + ++ L L+LSSN + ++P A + L N
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLP-LTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 18/179 (10%)
Query: 129 IPASISNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186
+P S+ S L + N S + L L + S NHL + +
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------AF 84
Query: 187 VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLD 245
V L +++S N+ + +L L+ + NN + + ++ L+ L
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDL-QALEVLLLYNNHI-VVVDRNAFEDMAQLQKLY 142
Query: 246 LGDNQFT---GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLL--FTLSFEGNRL 299
L NQ + ++ L KL L L NK + + L L N L
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 5e-12
Identities = 48/303 (15%), Positives = 96/303 (31%), Gaps = 29/303 (9%)
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE 193
S L+ + + L ++ + S +
Sbjct: 269 SRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQ 328
Query: 194 MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG 253
+ + + +L R + + + S L + L+ L+ +
Sbjct: 329 KECVLLKDRPECWCRDSATD-EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL- 385
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI-----PSSLG 308
L I ++ L L + E L + + S
Sbjct: 386 --LTIILLMRALDPL-----LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438
Query: 309 KCKNLILLDLSNNNLTGTIPTEVIGLSSLSI--YLDLSKNQLNGPLPSNFGILKNLGVLD 366
+ ++ +L L++ +LT + L L + +LDLS N+L LP L+ L VL
Sbjct: 439 EYADVRVLHLAHKDLT-----VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQ 492
Query: 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS--SFSSLRGIQNLDLSRNNLSGRI 424
S+N L + + + RL++L++ N Q + S + L+L N+L +
Sbjct: 493 ASDNALE-NVDG-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC-QE 548
Query: 425 PKY 427
Sbjct: 549 EGI 551
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 1e-11
Identities = 49/346 (14%), Positives = 94/346 (27%), Gaps = 32/346 (9%)
Query: 37 GNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96
+ S+ + + + + R LS + S + L
Sbjct: 224 NDQSAWFYHRWLLGRAEPHDVLCCVHVSREE------ACLSVCFSRPLTVGSRMGTLLLM 277
Query: 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSL 156
V++ S+ + + + + V
Sbjct: 278 VDEAPLSVEWRTPDGRNRPSHVWLCDLPA--ASLNDQLPQHTFRVIWTGSDSQKECVLLK 335
Query: 157 ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTR 216
+ R S + L S+ ++ L+ S + PE+ L T
Sbjct: 336 DRPECWCRDSATDEQL-------FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 388
Query: 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLD--------LGDNQFTGRILGSIGDLQKLQRL 268
+ L L+ +D ++F + ++ L
Sbjct: 389 ILLMR--ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446
Query: 269 RLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP 328
L + + L L+ L NRL ++P +L + L +L S+N L +
Sbjct: 447 HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD 502
Query: 329 TEVIGLSSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLDVSENKLS 373
V L L L L N+L L +L++ N L
Sbjct: 503 -GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-08
Identities = 41/250 (16%), Positives = 76/250 (30%), Gaps = 50/250 (20%)
Query: 225 NQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVG 284
L +L + T + + ++LQ L + L I +
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393
Query: 285 NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIY---- 340
L L +L L +D + ++ + +S+
Sbjct: 394 ALDPL-----------LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 341 ---LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397
L L+ L + + L + LD+S N+L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR------------------------ 476
Query: 398 GNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNS 457
+P + ++LR ++ L S N L + N LQ L L +N + I+ + S
Sbjct: 477 -ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCP 533
Query: 458 S--AISLDGN 465
++L GN
Sbjct: 534 RLVLLNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
L L + L + N L +P + L LE L A+ N + ++ L R++ +
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515
Query: 72 GANKLSG-EIPFSIYNLSSLSLLDFPVNQLQG--SLPSDIGFTLPNLEVL 118
N+L + + L LL+ N L + + LP++ +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSG 374
+ L N + P L +DLS NQ++ L + F L++L L + NK++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLR-RIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITE 94
Query: 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434
+ L+ L++N N +F L + L L N L F +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 435 QNLNLSSNHFE 445
Q ++L+ N F
Sbjct: 155 QTMHLAQNPFI 165
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 266 QRLRLKGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNL 323
+RL+ N + IP L + N++ + + ++L L L N +
Sbjct: 35 TEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92
Query: 324 TGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 382
T +P + GL SL L L+ N++N F L NL +L + +NKL +
Sbjct: 93 T-ELPKSLFEGLFSLQ-LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 383 CVRLEQLVMNGN 394
++ + + N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLL 289
IP+ L + + L N G+ +KL+R+ L N+ + E+ L L
Sbjct: 26 IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSL 82
Query: 290 FTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQ 347
+L GN++ +P SL +L LL L+ N + + + L +L+ L L N+
Sbjct: 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLN-LLSLYDNK 139
Query: 348 LNGPLPSNFGILKNLGVLDVSEN 370
L F L+ + + +++N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG 78
+ + N + P +F L + + NQ P+ L+ + S+ NK++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93
Query: 79 EIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNAS 137
E+P S+ L SL LL N++ L D L NL +L+ +N+ + S
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 138 NLMRLTIQKN 147
+ + + +N
Sbjct: 153 AIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
PG KLR + + N +S P +F L SL L N+ L ++
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 69 IGFGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
+ ANK++ + + +L +L+LL N+LQ ++ L ++ ++ N F
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
+ + + + + +N + P + +L ++ ++ N P +F LR + +L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456
N ++ FE F LQ L L++N + F +
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKIN-CLR-VDAFQD 126
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 215 TRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGN 273
L+ + N++ + +L NL LL L DN+ G+ L+ +Q + L N
Sbjct: 104 FSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQK 264
L L + N++ +P L L +L+LL L N+ + + DL
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 265 LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297
L L L NK + L + T+ N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 6e-11
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 11/172 (6%)
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQK 264
+ + + L + N + ++ G L +L+ L + IG L+
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 265 LQRLRLKGNKFLG-EIPSSVGNLTLLFTLSFEGNRLEGSIP----SSLGKCKNLIL-LDL 318
L+ L + N ++P NLT L L N+++ SI L + L L LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184
Query: 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSEN 370
S N + I L L L NQL F L +L + + N
Sbjct: 185 SLNPMN-FIQPGAFKEIRLK-ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378
N IP L + LDLS N L +F L VLD+S ++
Sbjct: 15 MELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 379 SLGSCVRLEQLVMNGNFFQGNIPS-SFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFLQN 436
+ S L L++ GN Q ++ +FS L +Q L NL+ + + + L+
Sbjct: 71 AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKE 128
Query: 437 LNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCSIK 483
LN++ N + + FSN + NL L LS+ I+
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLT--------NL----EHLDLSSNKIQ 162
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 39/238 (16%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE-TLSELKRMRSIGFGANKL 76
+ L + FN L SF + L+ L + + + I + L + ++ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 77 SGEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASIS 134
+ LSSL L L SL + L L+ LN +N +P S
Sbjct: 89 Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 135 NASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRL 192
N +NL L + N + L L+++ ++ SL+ N
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN------------------ 187
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG-LGNLVNLELLDLGDN 249
M I F + RLK + NQL ++P G L +L+ + L N
Sbjct: 188 PMNFIQPGAFKEI----------RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 50/267 (18%), Positives = 84/267 (31%), Gaps = 68/267 (25%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
S LD N L+ L S F+ P L+VL+ + TI+
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ----------------TIEDG 70
Query: 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207
+ L L + + N + + L
Sbjct: 71 AYQS-------LSHLSTLILTGNPIQS-------------------------------LA 92
Query: 208 ESVGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRIL-GSIGDLQKL 265
+ + L++ L ++ + G+L L+ L++ N L +L L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 266 QRLRLKGNKFLGEIPSSV----GNLTLL-FTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320
+ L L NK + I + + LL +L N + I K L L L
Sbjct: 152 EHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDT 209
Query: 321 NNLTGTIPTEVI-GLSSLSIYLDLSKN 346
N L ++P + L+SL + L N
Sbjct: 210 NQLK-SVPDGIFDRLTSLQ-KIWLHTN 234
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 6e-10
Identities = 67/447 (14%), Positives = 131/447 (29%), Gaps = 137/447 (30%)
Query: 51 QFVGQIPETLSELKRMRSI------GFG----------ANKLSGEIPFSIY--NLSSLSL 92
Q ++ + L EL+ +++ G G + K+ ++ F I+ NL + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 93 LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASN-LMRLTIQK----- 146
+ + LQ L I PN + + I I + L RL K
Sbjct: 195 PETVLEMLQ-KLLYQID---PNWTSRSDH----SSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 147 -------------NGFSGKVPSL---------ENLYKLQRVSFSLNHLGNG--EKDDLEF 182
N F+ L + L SL+H +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 183 VSSLVNAS----RLEMMEIS---INNFGGMLPESVGNLSTRLKRF-TVGNNQLFGNIPSG 234
+ ++ E++ + + ++ ES+ + + V ++L I S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294
L L E + +L IP+ + L+L++
Sbjct: 363 LNVLEPAEYRKM---------------FDRLSVFP-PSAH----IPTIL--LSLIW---- 396
Query: 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP--- 351
+ ++ + + K L++ T +IP SIYL+L N
Sbjct: 397 -FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---------SIYLELKVKLENEYALH 446
Query: 352 --LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409
+ ++ I K D+ L + +G L+ + + F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERM------TLF----- 493
Query: 410 IQNLDLSRNNLSGRIPKYFENFFFLQN 436
F +F FL+
Sbjct: 494 ---------------RMVFLDFRFLEQ 505
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 11/168 (6%)
Query: 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV-IGLSSL 337
IP+ L L + L ++ L L+L N L T+ V L+ L
Sbjct: 33 IPADTEKLDL------QSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397
L L+ NQL F L L L + N+L +L++L +N N Q
Sbjct: 86 G-TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 398 GNIPSS-FSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444
+IP+ F L +Q L LS N L F+ LQ + L N F
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLL 289
+PSG+ + E LDL + L KL L L N+ L + + V +LT L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTEL 85
Query: 290 FTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQ 347
TL N+L S+P + L L L N L ++P+ V L+ L L L+ NQ
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK-ELRLNTNQ 142
Query: 348 LNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394
L +P+ F L NL L +S N+L + +L+ + + GN
Sbjct: 143 LQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 59/202 (29%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
L+ + L+ L+ L+ NQLQ +L + + L L L NNQ +P +
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS-LPLGV 102
Query: 134 -SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRL 192
+ + L +L + N +L+
Sbjct: 103 FDHLTQLDKLYLGGN-------------QLKS---------------------------- 121
Query: 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQF 251
LP V + T+LK + NQL +IP+G L NL+ L L NQ
Sbjct: 122 -------------LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 252 TGRILGSIGDLQKLQRLRLKGN 273
G+ L KLQ + L GN
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDL L + F L L L++ N+L L L + N
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVF 454
F L + L L N L F+ L+ L L++N + +P G F
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP-AGAF 151
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG 78
L + L+ ++F L+ L +L+ NQ +L + ++G N+L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 79 EIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA- 136
+P ++ +L+ L L NQL+ SLPS + L L+ L NQ IPA +
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKL 154
Query: 137 SNLMRLTIQKNGF-SGKVPSLENLYKLQRV 165
+NL L++ N S + + L KLQ +
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF----VGQI 56
L L+KL L + +N L F +L+ L L A NQ +G +
Sbjct: 44 STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG-V 102
Query: 57 PETLSELKRMRSIGFGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNL 115
+ L++L ++ G N+L +P ++ L+ L L NQLQ S+P+ L NL
Sbjct: 103 FDHLTQLDKL---YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157
Query: 116 EVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147
+ L+ NQ + L +T+ N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 5e-09
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPS-SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKN 312
L + + L L ++ + L + + L L L+ + L P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L L+LS N L ++ + + SL L LS N L+
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQE-LVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-08
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSN 355
L +NL L + N + + GL L L + K+ L P
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLRFVAPDA 75
Query: 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397
F L L++S N L + + L++LV++GN
Sbjct: 76 FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEV 331
+ + L L E + + L L L + + L + +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75
Query: 332 -IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372
LS L+LS N L L +L L +S N L
Sbjct: 76 FHFTPRLS-RLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-05
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 310 CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVS 368
L + + + G +L+ L + Q L L L L +
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLT-ELYIENQQHLQHLELRDLRGLGELRNLTIV 64
Query: 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
++ L P++ RL +L ++ N + + L +Q L LS N L
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 5e-04
Identities = 19/120 (15%), Positives = 28/120 (23%), Gaps = 27/120 (22%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPS-SFGNLSSLEFLSAAVNQFVGQIPETLSELKRM 66
L L L + + L L L+ +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-------------- 68
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
R + A F LS L+ N L+ SL +L+ L N
Sbjct: 69 RFVAPDA--------FH--FTPRLSRLNLSFNALE-SLSWKT-VQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 8e-04
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKY-FENFFFLQNLNLSSNHFEGEVPIKGVFSNS 457
+ + L + + L+NL + + V F +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA-PDAFHFT 79
Query: 458 SAIS-LDGNDNLCGGISELHLSTCSIKE 484
+S L+ + N +S + S++E
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSLQE 107
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 65/416 (15%), Positives = 129/416 (31%), Gaps = 65/416 (15%)
Query: 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT----GPIPASISNASNLMRLT 143
+ LD +L + +++ L +V+ + T I +++ L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 144 IQKNGFSGK-VPSL-----ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197
++ N V + K+Q++S L S+L L+ + +
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL--TGAGCGVLSSTLRTLPTLQELHL 120
Query: 198 SINNFGG----MLPESVGNLSTRLKRFTVGNNQL----FGNIPSGLGNLVNLELLDLGDN 249
S N G +L E + + RL++ + L + S L + + L + +N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180
Query: 250 QFTGRILGSIGDLQK-----LQRLRLKGNKF----LGEIPSSVGNLTLLFTLSFEGNRLE 300
+ + K L+ L+L+ ++ V + L L+ N+L
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 301 GS-----IPSSLGKCKNLILLDLSNNNLT---GTIPTEVIGLSSLSIYLDLSKNQLNGPL 352
P L L L + +T V+ L L+ N+L
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL---- 296
Query: 353 PSNFGIL----------KNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQG 398
+ G L L V + + L L +L ++ N +
Sbjct: 297 -GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Query: 399 NIPSSFS-----SLRGIQNLDLSRNNLS----GRIPKYFENFFFLQNLNLSSNHFE 445
++ L L+ ++S + L+ L+LS+N
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 74/443 (16%), Positives = 146/443 (32%), Gaps = 85/443 (19%)
Query: 12 LGSLSKLRTLAVHFNNLSGE----IPSSFGNLSSLEFLSAAVNQF----VGQIPETLSEL 63
L L + + + + L+ I S+ +L L+ N+ V + + L
Sbjct: 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83
Query: 64 K-RMRSIGFGANKLSGE----IPFSIYNLSSLSLLDFPVNQLQGS----LPSDIGFTLPN 114
+++ + L+G + ++ L +L L N L + L +
Sbjct: 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143
Query: 115 LEVLNFGNNQFTGPIPASISNA----SNLMRLTIQKNGFSGK-VPSL-----ENLYKLQR 164
LE L + +++ + LT+ N + V L ++ +L+
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 165 VSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGG----MLPESVGNLSTRLKRF 220
+ + + + + + + L + + N G L + + S+RL+
Sbjct: 204 LKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261
Query: 221 TVGNNQL----FGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFL 276
+ + G++ L +L+ L L N+ +GD +G + L
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--------LGD---------EGARLL 304
Query: 277 GEIPSSVGNLTLLFTLSFEGNRLEG----SIPSSLGKCKNLILLDLSNNNLTGTIPTEVI 332
E L +L + S L + + L+ L +SNN L
Sbjct: 305 CETLLE--PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------ 356
Query: 333 GLSSLS----------IYLDLSKNQLN----GPLPSNFGILKNLGVLDVSENKLSGEIPN 378
G+ L L L+ ++ L + +L LD+S N L
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416
Query: 379 SLGSCVR-----LEQLVMNGNFF 396
L VR LEQLV+ ++
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 53/317 (16%), Positives = 90/317 (28%), Gaps = 62/317 (19%)
Query: 213 LSTRLKRFTVGNNQL-FGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDL----QKLQR 267
+S ++ + +L L L +++ L D T I L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 268 LRLKGN-------KFLGEIPSSVGNLTLLFTLSFEGNRLE----GSIPSSLGKCKNLILL 316
L L+ N + + + + LS + L G + S+L L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQT--PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 317 DLSNNNLTGTIPTEVIGLSSLS----------IYLDLSKNQLN----GPLPSNFGILKNL 362
LS+N L GL L L L L+ PL S +
Sbjct: 119 HLSDNLLGDA------GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 363 GVLDVSENKLSGE----IPNSLGSC-VRLEQLVMNGNFFQ----GNIPSSFSSLRGIQNL 413
L VS N ++ + L +LE L + ++ +S ++ L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 414 DLSRNNLSGR-----IPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468
L N L P L+ L + + G +
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLR------A 282
Query: 469 CGGISELHLSTCSIKES 485
+ EL L+ + +
Sbjct: 283 KESLKELSLAGNELGDE 299
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 31/225 (13%)
Query: 152 KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVG 211
+V L + + + DL L ++ +N +S+
Sbjct: 11 QVFPDPGLANAVKQNLGKQSV-----TDLVSQKELSG---VQNFNGDNSNI-----QSLA 57
Query: 212 NLS--TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLR 269
+ T LK + +NQ+ ++ S L +L LE L + N+ + + L RL
Sbjct: 58 GMQFFTNLKELHLSHNQI-SDL-SPLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLF 112
Query: 270 LKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT 329
L N+ S+ +L L LS N+L+ SI LG L +LDL N + T
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEI-----T 163
Query: 330 EVIGLSSLS--IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372
GL+ L ++DL+ + L + + +
Sbjct: 164 NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
LS ++ +N+ + ++L+ L + NQ + + L +L ++ +
Sbjct: 37 QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ-ISDL-SPLKDLTKLEELSV 92
Query: 72 GANKLSGEIPFSIYNLSSLSL--LDFPVNQLQGSLPSDIGF--TLPNLEVLNFGNNQFTG 127
N+L ++ + S L L N+L D L NLE+L+ NN+
Sbjct: 93 NRNRLK-----NLNGIPSACLSRLFLDNNEL-----RDTDSLIHLKNLEILSIRNNKLKS 142
Query: 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLV 187
+ + S L L + N + L L K+ + + N +
Sbjct: 143 IVM--LGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199
Query: 188 NASRLEMMEISINN 201
+ IS
Sbjct: 200 TVKDPDGRWISPYY 213
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270
++ + NN+ +G+ L L ++ +N+ T G+ + + L
Sbjct: 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 271 KGNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIP 328
N+ L + + L L TL NR+ + + S ++ LL L +N +T T+
Sbjct: 89 TSNR-LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145
Query: 329 TEV-IGLSSLSIYLDLSKNQLN 349
L SLS L+L N N
Sbjct: 146 PGAFDTLHSLS-TLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-08
Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 38/170 (22%)
Query: 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVI-GLSS 336
IP L L N + + K L ++ SNN +T I G S
Sbjct: 30 IPQYTAELRL------NNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82
Query: 337 LSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF 395
++ + L+ N+L + F L++L L + N+++ +
Sbjct: 83 VN-EILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVG------------------ 121
Query: 396 FQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNLSSNHF 444
SF L ++ L L N ++ + F+ L LNL +N F
Sbjct: 122 -----NDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 19 RTLAVHFNNLSG-EIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
L ++ N + E F L L ++ + N+ + I +N+L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 78 GEIPFSI-YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136
+ + L SL L N++ + +D L ++ +L+ +NQ T P +
Sbjct: 95 -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 137 SNLMRLTIQKN 147
+L L + N
Sbjct: 153 HSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 34/153 (22%)
Query: 317 DLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLDVSENKLSGE 375
D SN L IP + + L L+ N+ F L L ++ S NK++ +
Sbjct: 17 DCSNQKLN-KIPE---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-D 71
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435
I +F G+ + L+ N L K F+ L+
Sbjct: 72 IE-----------------------EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108
Query: 436 NLNLSSNHFEGEVPIKGVFSNSSA---ISLDGN 465
L L SN V F S+ +SL N
Sbjct: 109 TLMLRSNRIT-CVG-NDSFIGLSSVRLLSLYDN 139
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G L +LR + N ++ +F S + + N+ + L+ ++++
Sbjct: 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110
Query: 70 GFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
+N+++ S LSS+ LL NQ+ ++ TL +L LN N F
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 50/301 (16%), Positives = 90/301 (29%), Gaps = 64/301 (21%)
Query: 235 LGNLVNLELLDLGDNQFTGR----ILGSIGDLQKLQRLRLKGNKF-------LGEIPSSV 283
+ ++E L + T + + + ++ + L GN L E +S
Sbjct: 1 MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 284 GNLTLLFTLSFEGNRLEGSIP-------SSLGKCKNLILLDLSNNNLTGTIPTEVIGL-- 334
+L + R++ IP +L KC L + LS+N PT L
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLID 116
Query: 335 -----SSLSIYLDLSKNQL-------------NGPLPSNFGILKNLGVLDVSENKLSGE- 375
+ L +L L N L + L + N+L
Sbjct: 117 FLSKHTPLE-HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175
Query: 376 ---IPNSLGSCVRLEQLVMNGNFF-----QGNIPSSFSSLRGIQNLDLSRNNLSGR---- 423
+ S L + M N + + + + ++ LDL N +
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235
Query: 424 IPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTCSIK 483
+ +++ L+ L L+ G + A S N L L L I+
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSAR----GAAAVVDAFSKLENIGL----QTLRLQYNEIE 287
Query: 484 E 484
Sbjct: 288 L 288
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 67/359 (18%), Positives = 106/359 (29%), Gaps = 75/359 (20%)
Query: 155 SLENLYKLQRVSFSLNHLGNGEKDDL-EFVSSLVNASRLEMMEISINNFGGMLPESVGNL 213
L ++ + S N +G L E ++S + E +I +PE++ L
Sbjct: 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86
Query: 214 STRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDL----QKLQRLR 269
L L + L DN F + D L+ L
Sbjct: 87 L------------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128
Query: 270 LKGN-------KFLGE------IPSSVGNLTLLFTLSFEGNRLEG----SIPSSLGKCKN 312
L N + + N L ++ NRLE + +
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188
Query: 313 LILLDLSNNNLT--GTIPTEVIGLSSLS--IYLDLSKNQLNGP----LPSNFGILKNLGV 364
L + + N + G + GL+ LDL N L NL
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248
Query: 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRI 424
L +++ LS G+ ++ N G+Q L L N +
Sbjct: 249 LGLNDCLLSAR-----GAAAVVDAFSKLEN-------------IGLQTLRLQYNEIELDA 290
Query: 425 PKYF-----ENFFFLQNLNLSSNHF--EGEV--PIKGVFSNSSAISLDGNDNLCGGISE 474
+ E L L L+ N F E +V I+ VFS LD D++ E
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDE 349
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 50/279 (17%), Positives = 93/279 (33%), Gaps = 63/279 (22%)
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGF------TLPNLEVLNFGNNQFTG----PIPASISN 135
+L D +++ +P + P L + +N F P+ +S
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 136 ASNLMRLTIQKNGFS--------------GKVPSLENLYKLQRVSFSLNHLGNGEKDDLE 181
+ L L + NG +N L+ + N L NG +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW- 179
Query: 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNL 241
+ + L +++ N PE + +L + GL L
Sbjct: 180 -AKTFQSHRLLHTVKMVQNGIR---PEGIEHL-----------------LLEGLAYCQEL 218
Query: 242 ELLDLGDNQFT---GRILGS-IGDLQKLQRLRLKGN-------KFLGEIPSSVGNLTLLF 290
++LDL DN FT L + L+ L L + + S + N+ L
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ- 277
Query: 291 TLSFEGNRLEG----SIPSSLG-KCKNLILLDLSNNNLT 324
TL + N +E ++ + + K +L+ L+L+ N +
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 8e-08
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTLL 289
+P+G+ N ++L L DNQ T G L L+ L L N+ LG +P V +LT L
Sbjct: 34 VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQL 90
Query: 290 FTLSFEGNRLEGSIPS----SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345
L N+L +PS L L L + N LT +P + L+ L+ +L L +
Sbjct: 91 TVLDLGTNQLT-VLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLT-HLALDQ 144
Query: 346 NQLNGPLPSNFGILKNL 362
NQL F L +L
Sbjct: 145 NQLKSIPHGAFDRLSSL 161
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+ T + + +NQ+ P +L+NL+ L LG NQ +G L +L L L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 272 GNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
N+ L +PS+V L L L N+L +P + + +L L L N L +IP
Sbjct: 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG 153
Query: 331 VI-GLSSLS-IYL 341
LSSL+ YL
Sbjct: 154 AFDRLSSLTHAYL 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL----SGEIPNSLGSCVRLEQLVMNGNF 395
L L NQ+ P F L NL L + N+L G + +SL +L L + N
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSL---TQLTVLDLGTNQ 99
Query: 396 FQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFS 455
+ F L ++ L + N L+ +P+ E L +L L N + +P G F
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IP-HGAFD 156
Query: 456 NSSA---ISLDGN--DNLCGGISELHLST 479
S+ L GN D C I ++L
Sbjct: 157 RLSSLTHAYLFGNPWDCECRDI--MYLRN 183
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKL 265
LP +V + LK + N+L +P G+ L +L L L NQ G+ L L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 266 QRLRLKGN 273
L GN
Sbjct: 162 THAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF----VGQIPETLSELKRMRSIGFGAN 74
+ L +H N ++ P F +L +L+ L NQ VG + ++L++L + G N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSLTQLTVL---DLGTN 98
Query: 75 KLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGF-TLPNLEVLNFGNNQFTGPIPAS 132
+L+ +P ++++ L L L N+L LP G L +L L NQ +
Sbjct: 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPR--GIERLTHLTHLALDQNQLKSIPHGA 154
Query: 133 ISNASNLMRLTIQKN 147
S+L + N
Sbjct: 155 FDRLSSLTHAYLFGN 169
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 230 NIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLL 289
+ + L L + L L N +I + ++ L+ L L N + +I + L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNL-IKKIENLDAVADTL 95
Query: 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKNQ 347
L N++ S+ S + K NL +L +SNN +T E+ L++L L L+ N
Sbjct: 96 EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNP 151
Query: 348 LNGPLPSNFGI----------LKNLGVLD 366
L N L NL LD
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 264 KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNL 323
+ L + ++ +++ L L+ N +E I SSL +NL +L L N +
Sbjct: 26 EKVELHGMIPP-IEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82
Query: 324 TGTIPTEVIGLSSLSI---YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS--GEIPN 378
++ L +++ L +S NQ+ S L NL VL +S NK++ GEI +
Sbjct: 83 K-----KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEI-D 134
Query: 379 SLGSCVRLEQLVMNGN 394
L + +LE L++ GN
Sbjct: 135 KLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 32/152 (21%)
Query: 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP 351
L +E + ++L K L LS NN+ ++ LS +
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-----KISSLSGM-------------- 69
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411
+NL +L + N + +I N LE+L ++ N ++ S L ++
Sbjct: 70 --------ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLR 118
Query: 412 NLDLSRNNLSG-RIPKYFENFFFLQNLNLSSN 442
L +S N ++ L++L L+ N
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
L L NQ +P K+L ++D+S N++S S + +L L+++ N +
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 401 PSSFSSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNLSSN 442
P +F L+ ++ L L N++S +P+ F + L +L + +N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSL 337
IP V L L +GN+ +P L K+L L+DLSNN ++ T+ + ++ L
Sbjct: 29 IPRDVTELYL------DGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 338 SIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIP----NSLGSCVRLEQLVMN 392
L LS N+L +P F LK+L +L + N +S +P N L + L L +
Sbjct: 81 L-TLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA---LSHLAIG 134
Query: 393 GN 394
N
Sbjct: 135 AN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
NQ +P L N +L L+DL +N+ + S ++ +L L L N+ L IP
Sbjct: 40 GNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRT 97
Query: 284 -GNLTLLFTLSFEGNRLEGSIP-SSLGKCKNLILLDLSNN 321
L L LS GN + +P + L L + N
Sbjct: 98 FDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 340 YLDLSKNQLNG-PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398
L L+ N+L FG L +L L++ N+L+G PN+ +++L + N +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91
Query: 399 NIPS-SFSSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNLSSNHF 444
I + F L ++ L+L N +S + FE+ L +LNL+SN F
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-06
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 233 SGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292
+ N V LDL + I L + + N+ + ++ L L TL
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTL 69
Query: 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKN 346
NR+ +L L L+NN+L ++ L+SL YL + +N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 5/115 (4%)
Query: 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364
+ LDL + I L +D S N++ L F +L+ L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDA-IDFSDNEIR-KL-DGFPLLRRLKT 68
Query: 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG-NIPSSFSSLRGIQNLDLSRN 418
L V+ N++ + L +L++ N +SL+ + L + RN
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS--SFSSLRGIQNLDLS 416
LD+ K+ I N + + + + + N I F LR ++ L ++
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVN 72
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFE--GEVPIKGVFSNSSAISLDGN 465
N + + L L L++N G++ + + + + N
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 237 NLVNLELLDLGDNQFT-GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295
+++ L L +++ G++ G + ++L+ L L I +++ L L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELS 72
Query: 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKN---QLNG 350
NR+ G + KC NL L+LS N + + + L L LDL LN
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVTNLND 130
Query: 351 PLPSNFGILKNLGVLD 366
+ F +L L LD
Sbjct: 131 YRENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 291 TLSFEGNRL-EGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKNQ 347
L + +R EG + + + L L N LT + L L+ L+LS N+
Sbjct: 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNR 75
Query: 348 LNGPLPSNFGILKNLGVLDVSENKLSG-EIPNSLGSCVRLEQLVMNGN 394
++G L NL L++S NK+ L L+ L +
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS--SFSSLRGIQNLDLS 416
+K L VLD S + G++ LE L + S + L ++ L+LS
Sbjct: 19 VKEL-VLDNSRSNE-GKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELS 72
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
N +SG + E L +LNLS N +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 23/151 (15%)
Query: 240 NLELLDLGDNQFTGRILGSIG--DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297
NL+ L++ ++ I DL L++L L + LF
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF------- 246
Query: 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKNQLNG----P 351
S + NL L + + + + L +D+S L
Sbjct: 247 --------SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298
Query: 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGS 382
L + +K+L +++ N LS E+ L
Sbjct: 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 24/182 (13%)
Query: 184 SSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG--NLVNL 241
L L ++I N + + LK + + L ++ + +L NL
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 242 ELLDLGDNQFTGRILGSIGDLQ---------KLQRLRLKGNKFLGEIPSSVGN---LTLL 289
E L L G + + L+ L + + + L L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 290 FTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345
T+ L + + K K+L +++ N L+ + E+ SL + +D+S
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL--QKSLPMKIDVSD 339
Query: 346 NQ 347
+Q
Sbjct: 340 SQ 341
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 285 NLTLLFTLSFEGNRL-EGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYL 341
+ L + + +G I + NL L L N L V L L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG-EIPNSLGSCVRLEQLVMNGN 394
+LS+N++ G L L NL L++S NKL L L+ L +
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
Query: 237 NLVNLELLDLGDNQFT-GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295
+ L L + + G+I G + L+ L L L + S++ L L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELS 79
Query: 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS--IYLDLSKN---QLNG 350
NR+ G + K NL L+LS N L + + L L LDL LN
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLND 137
Query: 351 PLPSNFGILKNLGVLD 366
S F +L L LD
Sbjct: 138 YRESVFKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
+D+ + ++ L VLD ++ G+I V LE L + +
Sbjct: 8 MDMKRRIHLELRNRTPAAVREL-VLDNCKSND-GKIEGLTAEFVNLEFLSLINV----GL 61
Query: 401 PS--SFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445
S + L ++ L+LS N + G + E L +LNLS N +
Sbjct: 62 ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 50/407 (12%), Positives = 111/407 (27%), Gaps = 54/407 (13%)
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS-NASNLMRLTI 144
+ + +L+ + + LE + T I+ + N L +
Sbjct: 78 HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137
Query: 145 QK-NGFS--GKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINN 201
GFS G L+ + + + + L + L ++I+
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--TYTSLV--SLNISC 193
Query: 202 FGGML-PESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIG 260
+ ++ L TR NL+ L L ++ +
Sbjct: 194 LASEVSFSALERLVTRCP---------------------NLKSLKLNRAVPLEKLATLLQ 232
Query: 261 DLQKLQRLRLKG------NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314
+L+ L G + ++ L LS + + +P+ C L
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292
Query: 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374
L+LS + +++ L + + L K+L L V ++
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352
Query: 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF-ENFFF 433
PN + L + M ++++ ++ N
Sbjct: 353 MEPNVALTEQGLVSVSMG--------------CPKLESVLYFCRQMTNAALITIARNRPN 398
Query: 434 LQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480
+ L + + + ++ + C + L LS
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH---CKDLRRLSLSGL 442
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+ + + N L L +L L LG N+ G L L L L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 272 GNKFLGEIPSSV-GNLTLLFTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPT 329
N+ L +P+ V LT L L+ N+L+ S+P + K L L L N L ++P
Sbjct: 85 TNQ-LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141
Query: 330 EVI-GLSSLS-IYL 341
V L+SL I+L
Sbjct: 142 GVFDRLTSLQYIWL 155
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN-LTLL 289
+P+G+ LDL N G +L L +L L GNK L +P+ V N LT L
Sbjct: 22 VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSL 78
Query: 290 FTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVIG-LSSLSIYLDLSKNQ 347
L+ N+L+ S+P+ + K L L L+ N L ++P V L+ L L L +NQ
Sbjct: 79 TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLK-DLRLYQNQ 135
Query: 348 L 348
L
Sbjct: 136 L 136
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 43/146 (29%), Positives = 58/146 (39%), Gaps = 11/146 (7%)
Query: 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399
YLDL N L F L +L L + NKL L L ++ N Q
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 400 IPSSFSSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNLSSNHFEGEVPIKGVFSNSS 458
F L ++ L L+ N L +P F+ L++L L N + VP GVF +
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VP-DGVFDRLT 148
Query: 459 A---ISLDGN--DNLCGGISELHLST 479
+ I L N D C GI +LS
Sbjct: 149 SLQYIWLHDNPWDCTCPGI--RYLSE 172
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399
L+L N+L F L L L +S+N++ +L L ++ N Q +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-S 90
Query: 400 IPSS-FSSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNLSSN 442
+P+ F L ++ L L N L +P F+ LQ + L +N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 230 NIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV-GNLTL 288
IPS + L+L N+ G L +L +L L N+ + +P V LT
Sbjct: 25 GIPS------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTK 77
Query: 289 LFTLSFEGNRLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVI-GLSSLS-IYL 341
L L N+L+ S+P+ + K L L L N L ++P + L+SL I+L
Sbjct: 78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 93 LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGK 152
+ + + +++ + N+ + I N+ L + N
Sbjct: 24 ANLKKKSVT-DAVTQNELN--SIDQIIANNSDIKS-VQG-IQYLPNVRYLALGGNKLH-D 77
Query: 153 VPSLENLYKLQRVSFSLNHLG---NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPES 209
+ +L+ L L + + N L NG D L N L ++E + + LP+
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFD------KLTNLKELVLVENQLQS----LPDG 127
Query: 210 VGNLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRL 268
V + T L + +NQL ++P G+ L NL LDL NQ G L +L+ L
Sbjct: 128 VFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 269 RLKGNKFLGEIP 280
RL N+ L +P
Sbjct: 187 RLYQNQ-LKSVP 197
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.85 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.82 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.74 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.71 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.7 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.68 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.58 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.55 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.54 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.51 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.49 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.49 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.48 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.48 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.46 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.29 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.27 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.23 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.19 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.89 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.84 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.68 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.49 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.49 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.48 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.29 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.2 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.48 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.34 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.26 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.98 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 89.22 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 88.94 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=446.51 Aligned_cols=471 Identities=33% Similarity=0.522 Sum_probs=347.8
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|.+.+..+. ..+++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|
T Consensus 188 n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 188 NKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp SEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC
T ss_pred CcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC
Confidence 344444433 4566666666666666654444 6666666666666666665566666666666666666666654444
Q ss_pred hhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC--cccc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENL 159 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~l 159 (488)
.. .+++|++|++++|.+.+.+|..+...+++|++|++++|++....|..+..+++|++|++++|.+.+..+. +..+
T Consensus 265 ~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp CC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred cc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 33 5566666666666665555555553345666666666665555555566666666666666655433332 4555
Q ss_pred cccceeeccccccCCCCCCchh-------------------hhhhhcc--CCCccEEecCCCcccccCchhhhhhhcccc
Q 041473 160 YKLQRVSFSLNHLGNGEKDDLE-------------------FVSSLVN--ASRLEMMEISINNFGGMLPESVGNLSTRLK 218 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~-------------------~~~~l~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 218 (488)
++|++|+++.|.+.......+. ....+.. ++.|+.++++++.+.+..+..+... ++|+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~ 421 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELV 421 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCC
Confidence 5555555555544311111110 1111112 4567778888777776777777666 5788
Q ss_pred EEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCc
Q 041473 219 RFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298 (488)
Q Consensus 219 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (488)
+|++++|.+.+..|..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 88888888877778888888888888888888877777778888888888888888887778888888888888888888
Q ss_pred cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCc------------------------
Q 041473 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS------------------------ 354 (488)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~------------------------ 354 (488)
+.+..|.++..+++|++|++++|++.+.+|..+..++.+ ++|++++|++.+.+|.
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 888888888888888888888888888888888888777 7888888887655553
Q ss_pred ----------------------------------------------cccCCCCccEEEccCCcccCCCccccccCCCCCE
Q 041473 355 ----------------------------------------------NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388 (488)
Q Consensus 355 ----------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (488)
.+..+++|++|++++|.+++.+|..+.++++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 2344578999999999999999999999999999
Q ss_pred EecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCc
Q 041473 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 389 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
|++++|.++...|..+.++++|+.|+|++|++++.+|..+..+++|++|++++|++++.+|..+.+.++....+.|||..
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcchhh
Q 041473 469 CGGISELHLSTCSIK 483 (488)
Q Consensus 469 c~~~~~l~~~~c~~~ 483 (488)
||.. ++.|.-.
T Consensus 741 cg~~----l~~C~~~ 751 (768)
T 3rgz_A 741 CGYP----LPRCDPS 751 (768)
T ss_dssp ESTT----SCCCCSC
T ss_pred cCCC----CcCCCCC
Confidence 9963 4467643
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=433.99 Aligned_cols=373 Identities=35% Similarity=0.542 Sum_probs=227.4
Q ss_pred cCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 13 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..|. +..+++|++|++++|.+++..|..+.++++|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred ccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 334444444444444332222 25566666666666666655555 677777777777777777666777777777777
Q ss_pred EecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCC-CCCceeecccCCCccCCCC-cccccccceeecccc
Q 041473 93 LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA-SNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLN 170 (488)
Q Consensus 93 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 170 (488)
|++++|.+.+.+|.. .+++|++|++++|++....|..+... ++|++|++++|.+.+..+. +..+++|++|+++.|
T Consensus 252 L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 777777776555543 46777888887777776677776664 8888888888887755544 788888888888888
Q ss_pred ccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccC--CCCCCEEEccC
Q 041473 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGN--LVNLELLDLGD 248 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~L~~ 248 (488)
.+... .....+..++.|+.++++.+.+.+.++..+....++|++|++++|.+.+..+..+.. +++|++|++++
T Consensus 329 ~l~~~-----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 329 NFSGE-----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp EEEEE-----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred cccCc-----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 76421 111235677788888888888776777766665446666666666655444444443 45555555555
Q ss_pred CcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccc
Q 041473 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP 328 (488)
Q Consensus 249 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 328 (488)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 55554445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccc
Q 041473 329 TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 329 ~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 397 (488)
..+..++.+ ++|++++|++.+.+|.++..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 484 ~~l~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 484 SGLSNCTNL-NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HHHhcCCCC-CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 555555544 55555555555555555555555555555555555555555555555555555555444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=417.21 Aligned_cols=459 Identities=22% Similarity=0.222 Sum_probs=363.7
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|.+.+..|.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+....|..|+.+++|++|++++|.++...
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 47778888888888888888888888888777888888888888888888888777888888888888888888888666
Q ss_pred chhhhccCCCcEEecccCCcCCCCC-cchhccCCCCcEEEcCCCcccccCCccccCCCCCc--eeecccCCCccCCCCcc
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLP-SDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLM--RLTIQKNGFSGKVPSLE 157 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~ 157 (488)
+..+.++++|++|++++|.+. .++ ..+. .+++|++|++++|.+....+..+..+++|+ ++++++|.+....+...
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHIS-SIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCC-CCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred cchhccCCcccEEECCCCccc-ccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 777888888888888888887 442 2333 488888888888888766677788888888 78888888776655544
Q ss_pred cccccceeecc----------------------------------------------------ccccCCCCCCchhhhhh
Q 041473 158 NLYKLQRVSFS----------------------------------------------------LNHLGNGEKDDLEFVSS 185 (488)
Q Consensus 158 ~l~~L~~L~l~----------------------------------------------------~~~~~~~~~~~~~~~~~ 185 (488)
....|+.+++. ++.+.... ...
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~------~~~ 273 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS------SNT 273 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC------TTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC------HHH
Confidence 43444444443 33332211 122
Q ss_pred hccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCC-CccccccCCCC
Q 041473 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQK 264 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~ 264 (488)
+..++.|+.++++++.+. .++..+... ++|++|++++|.+....+..+..+++|++|++++|.+.. .....+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 456678888888888776 455555554 578888888888877767778888888888888887763 33445778888
Q ss_pred ccEEEcccccccCCC--CccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchh-hhcccCceeEE
Q 041473 265 LQRLRLKGNKFLGEI--PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE-VIGLSSLSIYL 341 (488)
Q Consensus 265 L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~L 341 (488)
|++|++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. +..++.+ ++|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEE
Confidence 899999888877544 556788899999999999888777888888999999999999887665544 5666666 899
Q ss_pred EccCCcccccCCccccCCCCccEEEccCCcccCC---CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE---IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 342 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 9999999888888899999999999999998752 2356888999999999999999888899999999999999999
Q ss_pred ccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++++..|..+..+++| +|++++|++++..|. .+.+++|+.++++|||+.|++
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9998999999999999 999999999976664 567899999999999999976
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-50 Score=404.63 Aligned_cols=459 Identities=19% Similarity=0.159 Sum_probs=313.2
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|++.+..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....|..|.++++|++|++++|.++...+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 44555555555555555555555555554445555555555555555555554445555555555555555555553343
Q ss_pred hhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCc----eeecccCCCccCCCCc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLM----RLTIQKNGFSGKVPSL 156 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~ 156 (488)
..+.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++....+..+..+.+++ ++++++|.+....+..
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 445555555555555555542 2344433 455555555555555544444444333332 4555555554444443
Q ss_pred ccccccceeeccccccCCC---------------------------------------------------CCCchhhhhh
Q 041473 157 ENLYKLQRVSFSLNHLGNG---------------------------------------------------EKDDLEFVSS 185 (488)
Q Consensus 157 ~~l~~L~~L~l~~~~~~~~---------------------------------------------------~~~~~~~~~~ 185 (488)
....+|+.++++++.+... ...-......
T Consensus 201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence 3333666666666543200 0000011111
Q ss_pred hccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCc
Q 041473 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKL 265 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 265 (488)
+..++.|+.++++++.+.. ++ .+... ++|++|++.+|.+. .+|. + .+++|++|++++|.... ...+..+++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~-l~-~l~~~-~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY-LE-DVPKH-FKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSI--SFKKVALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC-CC-CCCTT-CCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCE--ECCCCCCTTC
T ss_pred cccCCCCCEEEecCccchh-hh-hcccc-ccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCcc--chhhccCCCC
Confidence 4445666666666665532 22 33333 47777888777773 4553 4 77788888888775432 2255678889
Q ss_pred cEEEcccccccCC--CCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccc-hhhhcccCceeEEE
Q 041473 266 QRLRLKGNKFLGE--IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP-TEVIGLSSLSIYLD 342 (488)
Q Consensus 266 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~L~ 342 (488)
++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+..+ ..+..++.+ ++|+
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~ 430 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLD 430 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEE
Confidence 9999998887644 3667788999999999999887 456788889999999999999986666 566677777 8999
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccC-CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSG-EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++...+..|.++++|++|++++|+++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 99999998888999999999999999999986 37888999999999999999999888899999999999999999999
Q ss_pred CccchhhhccccCceeeccCcccccccCCccccC-CcceeeecCCCCcccc
Q 041473 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFS-NSSAISLDGNDNLCGG 471 (488)
Q Consensus 422 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~l~l~~n~~~c~~ 471 (488)
+..|..|..+++|++|++++|+++...+....++ +|+.|++++||+.|++
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 8889999999999999999999985444456665 6999999999999976
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=395.80 Aligned_cols=470 Identities=21% Similarity=0.218 Sum_probs=363.3
Q ss_pred cCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhc
Q 041473 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYN 86 (488)
Q Consensus 7 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 86 (488)
.+|..+. +.+++|++++|.+++..+.+|.++++|++|++++|.+....|.+|.++++|++|++++|.++...|..+.+
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4555544 37999999999999877899999999999999999999888999999999999999999999888999999
Q ss_pred cCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccc--
Q 041473 87 LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQ-- 163 (488)
Q Consensus 87 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~-- 163 (488)
+++|++|++++|.++ .++...+..+++|++|++++|++....+..+..+++|++|++++|.+....+. +..+++|+
T Consensus 104 l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 999999999999998 55433344799999999999999864445555699999999999998876554 78888888
Q ss_pred eeeccccccCCCCCCchhhh-----------------hh--------------------------hccC--CCccEEecC
Q 041473 164 RVSFSLNHLGNGEKDDLEFV-----------------SS--------------------------LVNA--SRLEMMEIS 198 (488)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~-----------------~~--------------------------l~~~--~~L~~l~l~ 198 (488)
.+++++|.+.......+... .. +..+ ..++.++++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 88888887764332211110 00 0000 156677777
Q ss_pred CCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC
Q 041473 199 INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 278 (488)
++.+.+..+..+... ++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 263 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 263 KHYFFNISSNTFHCF-SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TCCCSSCCTTTTTTC-TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred cCccCccCHHHhccc-cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 776665555445554 57888888888777 5566677888888888888887766667777788888888888876643
Q ss_pred CC-ccccCCccccEEecCCCccCCCC--CccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-c
Q 041473 279 IP-SSVGNLTLLFTLSFEGNRLEGSI--PSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP-S 354 (488)
Q Consensus 279 ~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~ 354 (488)
.+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+ .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-ELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC-SEEECTTCCEECCTTCC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC-CeEECCCCcCCCcccch
Confidence 33 44778888888888888877554 6677788888888888888876667777777776 788888888875544 3
Q ss_pred cccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccccc---CcccccCCCCCCEEeccCcccCCccchhhhcc
Q 041473 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN---IPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 431 (488)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|++++..|..|..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 477888888888888888877777788888888888888887652 23567788888888888888887778888888
Q ss_pred ccCceeeccCcccccccC-CccccCCcceeeecCCCCc---------cccccccccCcchhh
Q 041473 432 FFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL---------CGGISELHLSTCSIK 483 (488)
Q Consensus 432 ~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~---------c~~~~~l~~~~c~~~ 483 (488)
++|++|++++|++++..| ....+++| .|++++|... +..++.|++++|++.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 888888888888887554 45667778 8888888765 345677888887653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-48 Score=396.49 Aligned_cols=463 Identities=22% Similarity=0.229 Sum_probs=301.2
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|.+.+..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+.+|..+++|++|++++|.++...
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 46777777778888888888888888888777777888888888888888877666667888888888888888877555
Q ss_pred chhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCcccc--CCCCCceeecccCCCccCCCC---
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS--NASNLMRLTIQKNGFSGKVPS--- 155 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~--- 155 (488)
+..|.++++|++|++++|.+.+..+..+. .+++|++|++++|.+....+..+. .+++|++|++++|.+....+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 66777888888888888877744343333 577777777777766543333322 345666666666555443322
Q ss_pred -------------------------------------------------cccccc--cceeeccccccCCCCCCchhhhh
Q 041473 156 -------------------------------------------------LENLYK--LQRVSFSLNHLGNGEKDDLEFVS 184 (488)
Q Consensus 156 -------------------------------------------------~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~ 184 (488)
+..++. |+.|++++|.+... ...
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~------~~~ 266 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV------GND 266 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE------CTT
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc------Ccc
Confidence 111211 44444444433221 112
Q ss_pred hhccCCCccEEecCCCcccccCchhhhhh--------------------------------hccccEEEccccccccccc
Q 041473 185 SLVNASRLEMMEISINNFGGMLPESVGNL--------------------------------STRLKRFTVGNNQLFGNIP 232 (488)
Q Consensus 185 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~--------------------------------~~~L~~L~l~~~~~~~~~~ 232 (488)
.+..++.|+.++++++.+.+..+..+... .++|++|++++|.+....+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 23344555555555554433322222111 1345555555555554444
Q ss_pred hhccCCCCCCEEEccCCc----------------------------CCCCccccccCCCCccEEEcccccccCCCC-ccc
Q 041473 233 SGLGNLVNLELLDLGDNQ----------------------------FTGRILGSIGDLQKLQRLRLKGNKFLGEIP-SSV 283 (488)
Q Consensus 233 ~~l~~l~~L~~L~L~~~~----------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 283 (488)
..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+..+ ..+
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 426 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc
Confidence 445555555555554432 222223334444555555555554433222 344
Q ss_pred cCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc--cccchhhhcccCceeEEEccCCcccccCCccccCCCC
Q 041473 284 GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT--GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361 (488)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~ 361 (488)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..++.+ ++|++++|.+.+..+..|..+++
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhccccc
Confidence 45555555555555555444555555666666666666543 3456666677777 88999999888777778888899
Q ss_pred ccEEEccCCcccCCCc--------cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhcccc
Q 041473 362 LGVLDVSENKLSGEIP--------NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFF 433 (488)
Q Consensus 362 L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 433 (488)
|++|++++|.+++..+ ..+.++++|++|++++|.+....+..|.++++|+.|++++|+++...+..|..+++
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence 9999999998874321 23678899999999999998666678999999999999999999777788899999
Q ss_pred CceeeccCcccccccCC-cc-ccCCcceeeecCCCCcccc
Q 041473 434 LQNLNLSSNHFEGEVPI-KG-VFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 434 L~~L~l~~n~~~~~~~~-~~-~~~~L~~l~l~~n~~~c~~ 471 (488)
|+.|++++|++++..+. .+ .+++|+.+++++|||.|++
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999999865543 23 6889999999999999987
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=389.37 Aligned_cols=474 Identities=20% Similarity=0.198 Sum_probs=306.9
Q ss_pred CcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhcc
Q 041473 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNL 87 (488)
Q Consensus 8 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 87 (488)
+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....|..|..+++|++|++++|.++...+..|.++
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 555443 689999999999997777889999999999999999998889999999999999999999995555579999
Q ss_pred CCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC---cccccccce
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS---LENLYKLQR 164 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~L~~ 164 (488)
++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. ...+++|+.
T Consensus 97 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 97 TNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp TTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999999999998 66655555899999999999999877788899999999999999988766554 235589999
Q ss_pred eeccccccCCCCCCchhhhhhh---------------------ccCCCccEEecCCCcccccCchhhhhhh-ccccEEEc
Q 041473 165 VSFSLNHLGNGEKDDLEFVSSL---------------------VNASRLEMMEISINNFGGMLPESVGNLS-TRLKRFTV 222 (488)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~l---------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l 222 (488)
|++++|.+.......+.....+ ...+.|+.++++++.+.+..+..+.... ++|++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 9999998765443322211111 1225677777777776666565555542 24788888
Q ss_pred cccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEc--------------------------------
Q 041473 223 GNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL-------------------------------- 270 (488)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l-------------------------------- 270 (488)
++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 887777666667777777778877777666554444555555555555
Q ss_pred -ccccccCCCCccccCCccccEEecCCCc----------------------------cCCCCCccccCCCCCcEEEccCC
Q 041473 271 -KGNKFLGEIPSSVGNLTLLFTLSFEGNR----------------------------LEGSIPSSLGKCKNLILLDLSNN 321 (488)
Q Consensus 271 -~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------~~~~~~~~~~~~~~L~~L~l~~~ 321 (488)
++|.+.+..+..+..+++|++|++++|. +.+..+.++..+++|+.|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 4444443333334444444444443332 11112223333344444444444
Q ss_pred cCccccc-hhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc--CCCccccccCCCCCEEecCCccccc
Q 041473 322 NLTGTIP-TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS--GEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 322 ~~~~~~~-~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
.+.+.++ ..+..++.+ +++++++|.+.+..+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|.++.
T Consensus 416 ~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp CCEEECCSGGGTTCTTC-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred cCccccCcccccCcccc-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 4433222 222233333 44444444444334444444444555555544443 2445556666666666666666665
Q ss_pred cCcccccCCCCCCEEeccCcccCCccc--------hhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCc-
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGRIP--------KYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL- 468 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~- 468 (488)
..+.+|.++++|+.|++++|+++...+ ..|.++++|++|++++|.++...+ ..+.+++|+.|++++|...
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 555566666666666666666653311 225566666666666666663222 2455667777777776432
Q ss_pred --------cccccccccCcchhhhc
Q 041473 469 --------CGGISELHLSTCSIKES 485 (488)
Q Consensus 469 --------c~~~~~l~~~~c~~~~~ 485 (488)
+.+++.|++++|++...
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCHhHhCCCCCCCEEECCCCcCCcc
Confidence 45566677777766543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=379.61 Aligned_cols=455 Identities=22% Similarity=0.193 Sum_probs=365.5
Q ss_pred CcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhcc
Q 041473 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNL 87 (488)
Q Consensus 8 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 87 (488)
+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....|.+|.++++|++|++++|.++...|..|.++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 444443 789999999999997778899999999999999999998889999999999999999999997779999999
Q ss_pred CCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccc-cCCccccCCCCCceeecccCCCccCCCC-cccccccc--
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQ-- 163 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~-- 163 (488)
++|++|++++|.+. .++...+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+....+. +..+.+|+
T Consensus 104 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 104 TSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp TTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred ccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 99999999999998 6664444589999999999999875 4688999999999999999999876554 67776665
Q ss_pred --eeeccccccCCCCCCchhhhhhhccCCCccEEecCCCccc--------------------------------------
Q 041473 164 --RVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFG-------------------------------------- 203 (488)
Q Consensus 164 --~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-------------------------------------- 203 (488)
+++++.+.+...+... .....|+.++++++.+.
T Consensus 183 l~~L~l~~n~l~~~~~~~-------~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQA-------FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp CCEEECTTCCCCEECTTT-------TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred cceeeccCCCcceeCccc-------ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 7999998876433221 11224555555554332
Q ss_pred --------------------ccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCC
Q 041473 204 --------------------GMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ 263 (488)
Q Consensus 204 --------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 263 (488)
+..+. +.. .++++.+++.++.+.. .+ .+..+++|++|++++|.+. ..+ .+ .++
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~ 328 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK-FHC-LANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLP 328 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS-CGG-GTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCS
T ss_pred hhhhhccHhheeccccccccccccc-ccc-CCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCC
Confidence 11111 222 2577888888887753 44 6777888888888888884 344 34 788
Q ss_pred CccEEEcccccccCCCCccccCCccccEEecCCCccCCC--CCccccCCCCCcEEEccCCcCccccchhhhcccCceeEE
Q 041473 264 KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS--IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341 (488)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L 341 (488)
+|++|++++|...... .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+..++.+ ++|
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L 404 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL-QHL 404 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC-CEE
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC-Cee
Confidence 8888888888544322 566889999999999988755 3777888899999999999887 566777777777 899
Q ss_pred EccCCcccccCC-ccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc-cCcccccCCCCCCEEeccCcc
Q 041473 342 DLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG-NIPSSFSSLRGIQNLDLSRNN 419 (488)
Q Consensus 342 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 419 (488)
++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ..+..+.++++|+.|++++|.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999999987766 678889999999999999988888889999999999999999886 468889999999999999999
Q ss_pred cCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCc--------c-ccccccccCcchhh
Q 041473 420 LSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL--------C-GGISELHLSTCSIK 483 (488)
Q Consensus 420 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~--------c-~~~~~l~~~~c~~~ 483 (488)
+++..|..|..+++|++|++++|++++..| ....+++|+.|++++|... . ..++.|++++|++.
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 998888899999999999999999987655 4667899999999999865 2 24778888887654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-47 Score=394.45 Aligned_cols=451 Identities=22% Similarity=0.218 Sum_probs=252.6
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccc-cccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEe
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFV-GQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLD 94 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 94 (488)
+++++|++++|.+++..+..|.++++|++|++++|... .+.|.+|.++++|++|++++|.+....|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 45666666666655555555666666666666655332 23355556666666666666665555555566666666666
Q ss_pred cccCCcCCCCCcc-hhccCCCCcEEEcCCCcccccCC-ccccCCCCCceeecccCCCccCCCC-cccc--cccceeeccc
Q 041473 95 FPVNQLQGSLPSD-IGFTLPNLEVLNFGNNQFTGPIP-ASISNASNLMRLTIQKNGFSGKVPS-LENL--YKLQRVSFSL 169 (488)
Q Consensus 95 l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l--~~L~~L~l~~ 169 (488)
+++|.+.+.++.. .+..+++|++|++++|.+....+ ..+.++++|++|++++|.+....+. +..+ ++|+.++++.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 6666555333332 22245566666666665543322 3455566666666665555443322 3333 4455555554
Q ss_pred cccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhh------------------------------------h
Q 041473 170 NHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN------------------------------------L 213 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~------------------------------------~ 213 (488)
|.+.......+...........|+.++++++.+....+..+.. .
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 4443311111110000001112444444444322211111110 0
Q ss_pred -hccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEE
Q 041473 214 -STRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 214 -~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
.++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 1345555555555554444555555555555555555554444455555555555555555554444455555555555
Q ss_pred ecCCCccCCCCCccccCCCCCcEEEccCCcCcc------------------ccch----------------------hhh
Q 041473 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG------------------TIPT----------------------EVI 332 (488)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------~~~~----------------------~~~ 332 (488)
++++|.+....+..+..+++|++|++++|.+++ .+|. .+.
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 555555554444445555555555555554431 1111 112
Q ss_pred cccCceeEEEccCCcccccCCc-cccCCCCccEEEccCCccc-----CCCccccccCCCCCEEecCCccccccCcccccC
Q 041473 333 GLSSLSIYLDLSKNQLNGPLPS-NFGILKNLGVLDVSENKLS-----GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS 406 (488)
Q Consensus 333 ~~~~l~~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 406 (488)
.++.+ ++|++++|.+.+..+. .+..+++|++|++++|.+. +..+..|..+++|+.|++++|.++...+..|.+
T Consensus 424 ~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 33444 5666666666533222 3444567777777777665 233355777888888999998888778888888
Q ss_pred CCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 407 LRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 407 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+++|+.|+|++|++++..+..+. ++|+.|++++|.+++..| ..+.+|+.++++|||+.|++
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS--CCCSSCCEEEEEEECCCCSS
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh--hHhCCcCEEEecCCCccccc
Confidence 89999999999988877666655 789999999999887666 34679999999999999965
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=378.37 Aligned_cols=445 Identities=24% Similarity=0.224 Sum_probs=316.2
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEec
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 95 (488)
+++++|++++|.+++..+.+|.++++|++|++++|.+....+.+|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35667777776666555556666777777777777666565666666777777777776666555566666677777777
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCcccc-cCCccccCCCCCceeecccCCCccCCCC-ccccccc----ceeeccc
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKL----QRVSFSL 169 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L----~~L~l~~ 169 (488)
++|.+. .++...+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+....+. +..+++| +.++++.
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 776666 4444333356667777776666653 2466666666777777766666544332 4455555 5555555
Q ss_pred cccCCCCCCch------------------hhhhhhccCCCc--------------------------------cEEecCC
Q 041473 170 NHLGNGEKDDL------------------EFVSSLVNASRL--------------------------------EMMEISI 199 (488)
Q Consensus 170 ~~~~~~~~~~~------------------~~~~~l~~~~~L--------------------------------~~l~l~~ 199 (488)
+.+.......+ .....+..++.+ +.+++..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 54443221110 011111111222 2222222
Q ss_pred C-cccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC
Q 041473 200 N-NFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 200 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 278 (488)
+ .+.+..+..+... +++++++++++.+. ..|.++..+ +|++|++++|.+..... ..+++|+.|++++|.+...
T Consensus 267 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 267 LDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp TTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCB
T ss_pred chhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccc
Confidence 2 2223333444444 58888888888877 466667777 88999998888773332 3578899999999887654
Q ss_pred CCccccCCccccEEecCCCccCCCC--CccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-cc
Q 041473 279 IPSSVGNLTLLFTLSFEGNRLEGSI--PSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP-SN 355 (488)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~~ 355 (488)
.+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+. .++..+..++.+ ++|++++|.+.+..+ ..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL-EHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTC-CEEECTTSEEESCTTSCT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCC-CEEEccCCccccccchhh
Confidence 443 67899999999999887543 567788999999999999988 445457777777 899999999986655 57
Q ss_pred ccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccc-ccCcccccCCCCCCEEeccCcccCCccchhhhccccC
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ-GNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 434 (488)
+..+++|++|++++|.+....+..+..+++|++|++++|.+. ...|..+..+++|+.|++++|++++..|..|..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 888999999999999999888889999999999999999987 4678889999999999999999998889999999999
Q ss_pred ceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 435 QNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 435 ~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++|++++|++++..+. ...+++|+.|++++||+.|++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999876553 567899999999999999875
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=383.61 Aligned_cols=439 Identities=21% Similarity=0.208 Sum_probs=320.0
Q ss_pred cEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc-chhhhccCCCcEEeccc
Q 041473 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI-PFSIYNLSSLSLLDFPV 97 (488)
Q Consensus 19 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~ 97 (488)
+..+.+++.++ .+|. ..++|+.|++++|.+....+..|..+++|++|++++|.....+ |..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46788888888 5665 4578999999999999888999999999999999999554344 78899999999999999
Q ss_pred CCcCCCCCcchhccCCCCcEEEcCCCcccccCCcc--ccCCCCCceeecccCCCccCCC--CcccccccceeeccccccC
Q 041473 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPAS--ISNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLG 173 (488)
Q Consensus 98 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~ 173 (488)
|.+.+..|..+. .+++|++|++++|.+....+.. +..+++|++|++++|.+....+ .+..+++|++|++++|.+.
T Consensus 83 N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999844455555 7999999999999998655554 8899999999999999987654 3899999999999999887
Q ss_pred CCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhh-----ccccEEEccccccccccchhcc------------
Q 041473 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLS-----TRLKRFTVGNNQLFGNIPSGLG------------ 236 (488)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~------------ 236 (488)
......+.... . +.|+.++++.+.+....+..+.... ..|+.|++++|.+....+..+.
T Consensus 162 ~~~~~~l~~l~---~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 162 LVCEHELEPLQ---G-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCSGGGHHHH---H-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred eeCHHHccccc---C-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 65443333221 1 7899999999988766554433321 1499999999866543332221
Q ss_pred ------------------------C--CCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCcccc
Q 041473 237 ------------------------N--LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290 (488)
Q Consensus 237 ------------------------~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 290 (488)
+ .++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 1 26899999999999877788899999999999999999888888899999999
Q ss_pred EEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-----------------
Q 041473 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP----------------- 353 (488)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~----------------- 353 (488)
+|++++|.+.+..+..+..+++|+.|++++|.+....+..+..++.+ ++|++++|.+.+...
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-CEEEEETCCSCCCSSCCSCSEEEEESCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-CEEECCCCCCCcccCCCCcchhccCCCCcccc
Confidence 99999999998889999999999999999999986666667777777 899999988763211
Q ss_pred -c----------------------cccCCCCccEEEccCCcccCCCcc-ccccCCCCCEEecCCccccc-----cCcccc
Q 041473 354 -S----------------------NFGILKNLGVLDVSENKLSGEIPN-SLGSCVRLEQLVMNGNFFQG-----NIPSSF 404 (488)
Q Consensus 354 -~----------------------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~-----~~~~~~ 404 (488)
. .+..+++|++|++++|.++...+. .+..+++|+.|++++|.+.. ..+..|
T Consensus 397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 0 011334444444444444422111 23334555555555555431 222345
Q ss_pred cCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCc
Q 041473 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 405 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
.++++|+.|++++|.+++..|..|.++++|+.|++++|.+++ +|.....++|+.|++++|...
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQLL 539 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCCSCCCEEEEEEECCC
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhhccccEEECCCCcCC
Confidence 555666666666666665555556666666666666666653 332333356666666666544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=360.06 Aligned_cols=448 Identities=20% Similarity=0.254 Sum_probs=332.3
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|+++. +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++....+.+|..+++|++|++++|.+++..+
T Consensus 15 ~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred Ccccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 34443 444443 789999999999987778889999999999999999988888889999999999999999997777
Q ss_pred hhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCc-ccccCCccccCCCCCceeecccCCCccCCC-Cccc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQ-FTGPIPASISNASNLMRLTIQKNGFSGKVP-SLEN 158 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 158 (488)
..+.++++|++|++++|.+.+ ..|..+. .+++|++|++++|. +....+..+..+++|++|++++|.+.+..+ .+..
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 779999999999999999873 2344444 78999999999988 443334678899999999999999887544 4888
Q ss_pred ccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccC--chhhhhhhccccEEEccccccccccch---
Q 041473 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGML--PESVGNLSTRLKRFTVGNNQLFGNIPS--- 233 (488)
Q Consensus 159 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 233 (488)
+++|+.++++.+.... ........++.|+.++++++.+.+.. +..+....++++++++.++.+.+..+.
T Consensus 171 l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 171 IRDIHHLTLHLSESAF------LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp CSEEEEEEEECSBSTT------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred cccCceEecccCcccc------cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 8889999988877642 11122345778888888888765431 112222234666676666655432222
Q ss_pred -hccCCCCCCEEEccCCcCCCC------------------------------c-----cccccCCCCccEEEcccccccC
Q 041473 234 -GLGNLVNLELLDLGDNQFTGR------------------------------I-----LGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 234 -~l~~l~~L~~L~L~~~~~~~~------------------------------~-----~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
.+..+++|+.+++++|.+.+. . ...+...++|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 223445555555555443211 0 001122356888888888776
Q ss_pred CCCccc-cCCccccEEecCCCccCCCCC---ccccCCCCCcEEEccCCcCccccc--hhhhcccCceeEEEccCCccccc
Q 041473 278 EIPSSV-GNLTLLFTLSFEGNRLEGSIP---SSLGKCKNLILLDLSNNNLTGTIP--TEVIGLSSLSIYLDLSKNQLNGP 351 (488)
Q Consensus 278 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~~L~l~~~~~~~~ 351 (488)
..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..++.+ ++|++++|.+. .
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~ 401 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-P 401 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTCCCC-C
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCCCCc-c
Confidence 445444 578999999999998876543 336678899999999998873321 346667777 89999999988 6
Q ss_pred CCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhcc
Q 041473 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431 (488)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 431 (488)
+|..+..+++|++|++++|.++ .++..+ .++|+.|++++|+++.. ..++++|++|++++|+++ .+|. ...+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccC
Confidence 7777888889999999999987 555444 36899999999988743 357899999999999998 5565 4678
Q ss_pred ccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 432 FFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 432 ~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++|++|++++|++++..|. ...+++|+.|++++||+.|++
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 9999999999999976664 678999999999999999876
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=357.52 Aligned_cols=448 Identities=21% Similarity=0.206 Sum_probs=358.1
Q ss_pred CcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEeccc
Q 041473 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPV 97 (488)
Q Consensus 18 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (488)
.+.++.++..++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456777777777 5665543 5799999999999888888999999999999999999977788899999999999999
Q ss_pred CCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccC--CCCcccccccceeeccccccCCC
Q 041473 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGK--VPSLENLYKLQRVSFSLNHLGNG 175 (488)
Q Consensus 98 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~ 175 (488)
|.+. .++...+..+++|++|++++|++....+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+...
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 9998 56655555899999999999999855555789999999999999998763 34489999999999999988654
Q ss_pred CCCchhhhhhhccCCCc-cEEecCCCcccccCchhhhhhhccccEEEcccc-----------------------------
Q 041473 176 EKDDLEFVSSLVNASRL-EMMEISINNFGGMLPESVGNLSTRLKRFTVGNN----------------------------- 225 (488)
Q Consensus 176 ~~~~~~~~~~l~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------- 225 (488)
....+.. +..++.+ +.++++.+.+....+..+... ++++++++++
T Consensus 165 ~~~~~~~---l~~L~~~~~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 165 YCTDLRV---LHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CGGGGHH---HHTCTTCCCEEECTTCCCCEECTTTTTTC--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cHHHccc---hhccchhhhhcccCCCCceecCHHHhccC--cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 3322222 2222111 577777776654444333322 4555555443
Q ss_pred -----------------------------ccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccccccc
Q 041473 226 -----------------------------QLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFL 276 (488)
Q Consensus 226 -----------------------------~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 276 (488)
.+....+..+..+++|++|+++++.+.. .+..+..+ +|++|++++|.+.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc
Confidence 3333455667778999999999998874 55566667 9999999999887
Q ss_pred CCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCcccc--chhhhcccCceeEEEccCCcccccCCc
Q 041473 277 GEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTI--PTEVIGLSSLSIYLDLSKNQLNGPLPS 354 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~~L~l~~~~~~~~~~~ 354 (488)
..+. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..++.+ ++|++++|.+.+..+.
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL-KYLDLSFNGVITMSSN 391 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC-CEEECCSCSEEEEEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCcc-CEEECCCCcccccccc
Confidence 4443 4788999999999988755544 67899999999999987443 6777788887 8999999999855544
Q ss_pred cccCCCCccEEEccCCcccCCCc-cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC-Cccchhhhccc
Q 041473 355 NFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS-GRIPKYFENFF 432 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~ 432 (488)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+.++++|+.|++++|.+. +.+|..+..++
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 8899999999999999986655 57889999999999999999888899999999999999999998 56889999999
Q ss_pred cCceeeccCcccccccC-CccccCCcceeeecCCCCc---------cccccccccCcchhh
Q 041473 433 FLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL---------CGGISELHLSTCSIK 483 (488)
Q Consensus 433 ~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~---------c~~~~~l~~~~c~~~ 483 (488)
+|++|++++|++++..| ....+++|+.|++++|... +..++.|++++|++.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 99999999999997755 5678899999999999654 566788999998764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=353.77 Aligned_cols=447 Identities=21% Similarity=0.226 Sum_probs=285.4
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|++.+ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+....|..|..+++|++|++++|.++ .+
T Consensus 9 ~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 9 KNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp TSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec
Confidence 355663 555554 78888888888887666677888888888888888887777778888888888888888887 45
Q ss_pred chhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCcccccCCccccCCCCC--ceeecccCCC--ccCCCC
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL--MRLTIQKNGF--SGKVPS 155 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~ 155 (488)
|.. .+++|++|++++|.+.+ .+|..+. .+++|++|++++|++.. ..+..+++| ++|++++|.+ ....+.
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 555 67888888888888873 3455555 68888888888887764 345556666 8888888776 333222
Q ss_pred -ccccc-ccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCc-------ccccCchhhhhhhccccEEEccccc
Q 041473 156 -LENLY-KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINN-------FGGMLPESVGNLSTRLKRFTVGNNQ 226 (488)
Q Consensus 156 -~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~ 226 (488)
+..+. ....+++..+.+... .....+..++.|+.++++.+. +.+.++ .+... ++++.+++.++.
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~ 231 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHF-----ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTN-PKLSNLTLNNIE 231 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCC-----CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGC-TTCCEEEEEEEE
T ss_pred cccccccceEEEEeccCcchhh-----hhhhhhhcccceeeccccccccccccceeecchh-hhccc-cchhhccccccc
Confidence 33322 112233333332211 111223345666666666654 222222 23333 467777777666
Q ss_pred cccccchhc---cCCCCCCEEEccCCcCCCCccccc-----cCCCCccEEEcccccccCCCCccccCC---ccccEEecC
Q 041473 227 LFGNIPSGL---GNLVNLELLDLGDNQFTGRILGSI-----GDLQKLQRLRLKGNKFLGEIPSSVGNL---TLLFTLSFE 295 (488)
Q Consensus 227 ~~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~ 295 (488)
+.......+ ...++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ ......+..+ ++|+.|+++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcC
Confidence 543221111 123567777777776665455555 6667777777777766 2221333332 457777777
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc--cCCccccCCCCccEEEccCCccc
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG--PLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+|.+.... ....+++|++|++++|.+.+..|..+..++.+ ++|++++|.+.+ ..|..+..+++|++|++++|.++
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 77665322 12456777777777777776667666666666 777777777764 33456677777888888888777
Q ss_pred CCCcc-ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-c
Q 041473 374 GEIPN-SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-K 451 (488)
Q Consensus 374 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 451 (488)
+.+|. .+..+++|++|++++|.++...+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+. .
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 54554 366777888888888877654444433 67788888888777 5666666777888888888877743222 5
Q ss_pred cccCCcceeeecCCCCcccc
Q 041473 452 GVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~c~~ 471 (488)
..+++|+.|++++||+.|++
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCH
T ss_pred ccCCcccEEECcCCCCcccC
Confidence 56777788888888877754
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=357.44 Aligned_cols=367 Identities=18% Similarity=0.231 Sum_probs=212.7
Q ss_pred ccccccccchhhhccCCCcEEecccCCcCCC-----------------CCcchh-ccCCCCcEEEcCCCcccccCCcccc
Q 041473 73 ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGS-----------------LPSDIG-FTLPNLEVLNFGNNQFTGPIPASIS 134 (488)
Q Consensus 73 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~ 134 (488)
+|.+++ +|..+.++++|++|++++|.+++. +|..+. ..+++|++|++++|++....|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 456665 788888888888888888888853 777654 2588888888888888778888888
Q ss_pred CCCCCceeecccCC-Ccc-CCC-Ccccc------cccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCccccc
Q 041473 135 NASNLMRLTIQKNG-FSG-KVP-SLENL------YKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGM 205 (488)
Q Consensus 135 ~l~~L~~L~l~~~~-~~~-~~~-~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 205 (488)
++++|++|++++|. +.+ ..+ .+..+ ++|+.|++++|.+...+. ...+..++.|+.++++.+.+.+.
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-----~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-----ETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-----HHHHTTCTTCCEEECCSCCCEEE
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-----hhhhccCCCCCEEeCcCCcCccc
Confidence 88888888888887 665 333 24443 666666666665542110 01334445555555555554444
Q ss_pred CchhhhhhhccccEEEccccccccccchhccCCCC-CCEEEccCCcCCCCccccccCC--CCccEEEcccccccCCCCcc
Q 041473 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN-LELLDLGDNQFTGRILGSIGDL--QKLQRLRLKGNKFLGEIPSS 282 (488)
Q Consensus 206 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~ 282 (488)
++ .+... ++|++|++++|.++ .+|..+..+++ |++|++++|.+. ..+..+..+ ++|+.|++++|.+.+..|..
T Consensus 346 ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 44 33333 35555555555554 34444555555 555555555554 233333332 24555555555554444444
Q ss_pred cc-------CCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcc
Q 041473 283 VG-------NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355 (488)
Q Consensus 283 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~ 355 (488)
+. .+++|++|++++|.+....+..+..+++|++|++++|.++ .+|........ ..
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~ 483 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------EN 483 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EE
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------cc
Confidence 43 3445555555555544222222333445555555555444 33332221110 00
Q ss_pred ccCCCCccEEEccCCcccCCCccccc--cCCCCCEEecCCccccccCcccccCCCCCCEEec------cCcccCCccchh
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLG--SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL------SRNNLSGRIPKY 427 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~~ 427 (488)
+..+++|++|++++|.++ .+|..+. .+++|++|++++|+++. .|..+.++++|+.|++ ++|++.+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 112236667777777666 5665554 66677777777776664 5666666677777776 445666667777
Q ss_pred hhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 428 FENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 428 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+..+++|++|++++|++ +.+|.. ..++|+.|++++||+.|-.
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred HhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 77777777777777777 355543 3367777777777776644
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=345.32 Aligned_cols=439 Identities=19% Similarity=0.224 Sum_probs=354.5
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccc-c
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG-E 79 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~ 79 (488)
+|++.+..|.+|..+++|++|++++|.+++..|.+|.++++|++|++++|.+.. +|.. .+++|++|++++|.++. .
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCcccccc
Confidence 578888889999999999999999999997778999999999999999999984 4444 89999999999999985 4
Q ss_pred cchhhhccCCCcEEecccCCcCCCCCcchhccCCCC--cEEEcCCCcc--cccCCccccCCC-CCceeecccCCCccCCC
Q 041473 80 IPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNL--EVLNFGNNQF--TGPIPASISNAS-NLMRLTIQKNGFSGKVP 154 (488)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~ 154 (488)
.|..+.++++|++|++++|.+.+ ..+ ..+++| +.|++++|.+ ....|..+..+. +...+++++|.+.+..+
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~-~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK---SSV-LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG---GGG-GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred chhhhccCCcceEEEecCcccch---hhc-cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 67899999999999999998873 233 367888 9999999998 666777777665 33456777777765544
Q ss_pred C--cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhh--hhccccEEEccccccccc
Q 041473 155 S--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN--LSTRLKRFTVGNNQLFGN 230 (488)
Q Consensus 155 ~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 230 (488)
. +..+++|+.++++.|...............+..++.|+.++++.+.+.+.....+.. ..++|++|++++|.+.+.
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 3 778999999999987522111111134457788899999999988766543332222 124899999999999877
Q ss_pred cchhc-----cCCCCCCEEEccCCcCCCCccccccCC---CCccEEEcccccccCCCCccccCCccccEEecCCCccCCC
Q 041473 231 IPSGL-----GNLVNLELLDLGDNQFTGRILGSIGDL---QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302 (488)
Q Consensus 231 ~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 302 (488)
.|..+ ..+++|+.++++++.+ ......+..+ .+|+.|++++|.+.... ....+++|++|++++|.+.+.
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred cccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence 88877 8899999999999988 3332333333 67999999999876332 136889999999999999988
Q ss_pred CCccccCCCCCcEEEccCCcCcc--ccchhhhcccCceeEEEccCCcccccCC-ccccCCCCccEEEccCCcccCCCccc
Q 041473 303 IPSSLGKCKNLILLDLSNNNLTG--TIPTEVIGLSSLSIYLDLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNS 379 (488)
Q Consensus 303 ~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 379 (488)
.|..+..+++|++|++++|.+.+ .+|..+..++.+ ++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 89999999999999999999985 456677788888 899999999997344 45888999999999999998777766
Q ss_pred cccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 380 LGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+. ++|+.|++++|+++ ..|..+..+++|++|++++|+++...+..+..+++|++|++++|+++|.++..+.
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 53 79999999999999 5666666999999999999999954444589999999999999999998775443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=353.29 Aligned_cols=438 Identities=18% Similarity=0.176 Sum_probs=341.0
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccc-c
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG-E 79 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~ 79 (488)
+|++.+..|.+|..+++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|+.+++|++|++++|.++. .
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 578889999999999999999999999997778899999999999999999998888889999999999999999985 3
Q ss_pred cchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-ccc
Q 041473 80 IPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LEN 158 (488)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~ 158 (488)
.+..+.++++|++|++++|...+.+|...+..+++|++|++++|.+....|..+..+++|++|+++++........ +..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence 4678899999999999999854477765555799999999999999888889999999999999988876543322 345
Q ss_pred ccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhh---hhccccEEEcccccccc------
Q 041473 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN---LSTRLKRFTVGNNQLFG------ 229 (488)
Q Consensus 159 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~------ 229 (488)
+++|+.+++++|.+........ ......+.|+.+++.++.+.+..+..+.. ..+.++.+++.+|.+..
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 271 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC
T ss_pred cccccEEEccCCcccccccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc
Confidence 7889999998888765421111 11123445555665555444332222211 11244444444443321
Q ss_pred ------------------------c-----cchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC
Q 041473 230 ------------------------N-----IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP 280 (488)
Q Consensus 230 ------------------------~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 280 (488)
. .+......++|++|++++|.+.......+..+++|++|++++|.+.+..+
T Consensus 272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc
Confidence 1 11112335689999999998875444444678999999999999876443
Q ss_pred ---ccccCCccccEEecCCCccCCCCC--ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcc
Q 041473 281 ---SSVGNLTLLFTLSFEGNRLEGSIP--SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355 (488)
Q Consensus 281 ---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~ 355 (488)
..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+..++.+ ++|++++|.+. .++..
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~ 428 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTC 428 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTT
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccch
Confidence 346789999999999999985432 45788999999999999998 788887777777 89999999988 34443
Q ss_pred ccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCc
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 435 (488)
+ .++|++|++++|.+++. + ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+
T Consensus 429 ~--~~~L~~L~Ls~N~l~~~-~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 429 I--PQTLEVLDVSNNNLDSF-S---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp S--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred h--cCCceEEECCCCChhhh-c---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 3 26899999999999843 2 46899999999999998 4554 45789999999999999988888999999999
Q ss_pred eeeccCcccccccCCcc
Q 041473 436 NLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 436 ~L~l~~n~~~~~~~~~~ 452 (488)
.|++++|++++.+|..+
T Consensus 501 ~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 501 KIWLHTNPWDCSCPRID 517 (549)
T ss_dssp EEECCSSCBCCCHHHHH
T ss_pred EEEecCCCccCCCccHH
Confidence 99999999999888543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=352.51 Aligned_cols=357 Identities=18% Similarity=0.240 Sum_probs=269.6
Q ss_pred ccccccccchhhcCCCCccEEEeeccccccc-----------------cchhhh--ccCCCcEEecccCCcCCCCCcchh
Q 041473 49 VNQFVGQIPETLSELKRMRSIGFGANKLSGE-----------------IPFSIY--NLSSLSLLDFPVNQLQGSLPSDIG 109 (488)
Q Consensus 49 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~ 109 (488)
+|.+++ +|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 356666 788899999999999999999864 888888 999999999999999888997777
Q ss_pred ccCCCCcEEEcCCCc-ccc-cCCccccCC------CCCceeecccCCCccCCC--CcccccccceeeccccccCCCCCCc
Q 041473 110 FTLPNLEVLNFGNNQ-FTG-PIPASISNA------SNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLGNGEKDD 179 (488)
Q Consensus 110 ~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~ 179 (488)
.+++|++|++++|+ +++ ..|..+..+ ++|++|++++|.+...+. .+..+++|+.|+++.|.+..
T Consensus 271 -~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g----- 344 (636)
T 4eco_A 271 -ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----- 344 (636)
T ss_dssp -TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-----
T ss_pred -cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-----
Confidence 79999999999998 876 677777665 899999999999985555 58899999999999988762
Q ss_pred hhhhhhhccCCCccEEecCCCcccccCchhhhhhhcc-ccEEEccccccccccchhccCCC--CCCEEEccCCcCCCCcc
Q 041473 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTR-LKRFTVGNNQLFGNIPSGLGNLV--NLELLDLGDNQFTGRIL 256 (488)
Q Consensus 180 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~~~ 256 (488)
... .+..++.|+.++++++.+. .++..+.... + |++|++++|.++ .+|..+..+. +|++|++++|.+.+..+
T Consensus 345 -~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 345 -KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp -ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred -chh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 111 5667789999999999887 6777777764 6 999999999998 6777776654 89999999999988777
Q ss_pred cccc-------CCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCc-cccCCC-------CCcEEEccCC
Q 041473 257 GSIG-------DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS-SLGKCK-------NLILLDLSNN 321 (488)
Q Consensus 257 ~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-------~L~~L~l~~~ 321 (488)
..+. .+++|++|++++|.+....+..+..+++|++|++++|.+. .+|. .+.... +|+.|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 7777 7789999999999998555555677999999999999998 4444 333222 6777777777
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec------CCcc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM------NGNF 395 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------~~n~ 395 (488)
.++ .+|..+.. ..+++|++|++++|.+++ +|..+..+++|++|++ ++|.
T Consensus 499 ~l~-~lp~~~~~-----------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 499 KLT-KLSDDFRA-----------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp CCC-BCCGGGST-----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred cCC-ccChhhhh-----------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 666 55544430 134455555555555553 4545555555555555 3455
Q ss_pred ccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 396 FQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 396 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+....|..+.++++|++|++++|++. .+|..+. ++|+.|++++|++.+
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 55566666677777777777777773 5555444 577777777776664
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=342.18 Aligned_cols=449 Identities=22% Similarity=0.196 Sum_probs=306.3
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
++++|++++|.|++..+.+|.++++|++|++++|.+..+.+.+|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68899999988886667788889999999999998887778888889999999999988886666778888899999999
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccc-cCCccccCCCCCceeecccCCCccCCCC-cccccccc----eeecccc
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQ----RVSFSLN 170 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~----~L~l~~~ 170 (488)
+|.++ .++...+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+....+. +..+.+++ .++++.+
T Consensus 133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 98888 6776655578889999998888764 3466778888899999888887655433 33333322 3334433
Q ss_pred ccCCCCCCc------------------hhhhhhhccCCCccEEecCCCcc------ccc---------------------
Q 041473 171 HLGNGEKDD------------------LEFVSSLVNASRLEMMEISINNF------GGM--------------------- 205 (488)
Q Consensus 171 ~~~~~~~~~------------------~~~~~~l~~~~~L~~l~l~~~~~------~~~--------------------- 205 (488)
.+....... ......+..+..++...+..... ...
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 332111100 01111222333333332211100 000
Q ss_pred ------CchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc-------------------cccc
Q 041473 206 ------LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL-------------------GSIG 260 (488)
Q Consensus 206 ------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-------------------~~l~ 260 (488)
.... ......++.+.+..+.+.... .+.....++.|++.++.+..... ....
T Consensus 292 ~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 292 DYYLDGIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CSCEEECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred cccccchhhh-hhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 0000 011124444544444433221 23344455555555554432211 1223
Q ss_pred CCCCccEEEcccccccC--CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCc
Q 041473 261 DLQKLQRLRLKGNKFLG--EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSL 337 (488)
Q Consensus 261 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l 337 (488)
.+++|+.+++++|.+.. ..+..+....+|+.+++..+... ..+..+..+++|+.+++..+......+. .+..+..+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 45667777777665532 22333445667777777766655 3445566788888888888876544443 34445555
Q ss_pred eeEEEccCCcccccCCccccCCCCccEEEccCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEecc
Q 041473 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416 (488)
Q Consensus 338 ~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 416 (488)
+.++++.|.+....+..+..++.+++|++++|.+. ...|..|..+++|++|++++|+++...+..|.++++|++|+|+
T Consensus 448 -~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 448 -IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp -CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 78999999998888888888999999999999754 3567788899999999999999998888999999999999999
Q ss_pred CcccCCccchhhhccccCceeeccCcccccccCC-cccc-CCcceeeecCCCCcccc
Q 041473 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVF-SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 417 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~-~~L~~l~l~~n~~~c~~ 471 (488)
+|++++..+..|.++++|++|++++|++++..|. ...+ ++|+.|++++|||.|+|
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999988888999999999999999999977664 3344 78999999999999987
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=349.48 Aligned_cols=443 Identities=19% Similarity=0.229 Sum_probs=252.5
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccc-cccccccccchhh----------------------------------
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSA-AVNQFVGQIPETL---------------------------------- 60 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~---------------------------------- 60 (488)
.+++.|+|+++.+.+.+|..+.++++|++|++ ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46777777777777777777777788888887 6665533311110
Q ss_pred -----------------cCCCCccEEEeec--cccccccchhhhccCCCcEEecccCCcCC-----------------CC
Q 041473 61 -----------------SELKRMRSIGFGA--NKLSGEIPFSIYNLSSLSLLDFPVNQLQG-----------------SL 104 (488)
Q Consensus 61 -----------------~~l~~L~~L~l~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~ 104 (488)
.....++.+.+.. |.+++ +|..+.++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111222222222 55554 67777777888888888877774 16
Q ss_pred Ccch-hccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCC-Ccc-CCCC-cccc-------cccceeeccccccC
Q 041473 105 PSDI-GFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNG-FSG-KVPS-LENL-------YKLQRVSFSLNHLG 173 (488)
Q Consensus 105 ~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~-~~~l-------~~L~~L~l~~~~~~ 173 (488)
|..+ +..+++|+.|++++|.+....|..+..+++|++|++++|. +.+ ..|. +..+ ++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 6665 2357778888888777776777777778888888888776 654 2222 3333 37777777777665
Q ss_pred CCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCC-CCEEEccCCcCC
Q 041473 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN-LELLDLGDNQFT 252 (488)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~ 252 (488)
..+. ...+..++.|+.++++.|.+. .++ .+... ++|+.|++++|.+. .+|..+..+++ |++|++++|.+.
T Consensus 562 ~ip~-----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 562 EFPA-----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp BCCC-----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ccCC-----hhhhhcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 2110 113445556666666666555 344 33333 46667777776666 55555666666 777777777665
Q ss_pred CCccccccCCC--CccEEEcccccccCCCCcc---cc--CCccccEEecCCCccCCCCCcc-ccCCCCCcEEEccCCcCc
Q 041473 253 GRILGSIGDLQ--KLQRLRLKGNKFLGEIPSS---VG--NLTLLFTLSFEGNRLEGSIPSS-LGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 253 ~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 324 (488)
..+..+..++ +|+.|++++|.+.+..+.. +. .+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 3344444433 3677777777665433321 11 2346666777666666 33333 335666677777766666
Q ss_pred cccchhhhccc--------CceeEEEccCCcccccCCcccc--CCCCccEEEccCCcccCCCccccccCCCCCEEecCC-
Q 041473 325 GTIPTEVIGLS--------SLSIYLDLSKNQLNGPLPSNFG--ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG- 393 (488)
Q Consensus 325 ~~~~~~~~~~~--------~l~~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~- 393 (488)
.+|...+... .+ ++|++++|.+. .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred -ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 5554443322 23 56666666655 4444444 55666666666666653 555555666666666644
Q ss_pred -----ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCC
Q 041473 394 -----NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDN 467 (488)
Q Consensus 394 -----n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~ 467 (488)
|.+....|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+ .......+..+.+.+|+
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~- 862 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK- 862 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT-
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC-
Confidence 444445555555566666666666665 34444433 456666666665543211 11112233344444443
Q ss_pred ccccccccccCcchhhh
Q 041473 468 LCGGISELHLSTCSIKE 484 (488)
Q Consensus 468 ~c~~~~~l~~~~c~~~~ 484 (488)
..++.+|+...
T Consensus 863 ------~~~I~gC~~L~ 873 (876)
T 4ecn_A 863 ------TQDIRGCDALG 873 (876)
T ss_dssp ------TSEEESCGGGC
T ss_pred ------ccccCCCCCcc
Confidence 23466776543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=343.86 Aligned_cols=427 Identities=18% Similarity=0.195 Sum_probs=342.0
Q ss_pred CCCccccCcccccCCccCcEEec-cCCCCCCCcCcc--------------------------------------------
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAV-HFNNLSGEIPSS-------------------------------------------- 35 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l-~~~~l~~~~~~~-------------------------------------------- 35 (488)
+|++.|.+|.+|+++++|++|++ ++|.+.+..+..
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 47899999999999999999999 777554321100
Q ss_pred -------ccCCcccccccccc--cccccccchhhcCCCCccEEEeecccccc-----------------ccchhhh--cc
Q 041473 36 -------FGNLSSLEFLSAAV--NQFVGQIPETLSELKRMRSIGFGANKLSG-----------------EIPFSIY--NL 87 (488)
Q Consensus 36 -------~~~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~~~--~l 87 (488)
......++.+.+.. |.+.+ +|..|.++++|++|++++|.+++ .+|..+. ++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 01223344444444 67776 78889999999999999999996 3888877 99
Q ss_pred CCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCc-ccc-cCCccccC-------CCCCceeecccCCCccCCC--Cc
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQ-FTG-PIPASISN-------ASNLMRLTIQKNGFSGKVP--SL 156 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~--~~ 156 (488)
++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +.. ..|..+.. +++|++|++++|.+...+. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 9999999999998889997776 79999999999998 775 56665544 4599999999999995555 48
Q ss_pred ccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhcc
Q 041473 157 ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236 (488)
Q Consensus 157 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 236 (488)
..+++|+.|++++|.+...+ .+..++.|+.++++.|.+. .++..+.....+|++|++++|.+. .+|..+.
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp--------~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE--------AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC--------CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred hcCCCCCEEECCCCCcccch--------hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 99999999999999876322 5678889999999999988 777777777423999999999998 6677776
Q ss_pred CCC--CCCEEEccCCcCCCCcccc---cc--CCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccC
Q 041473 237 NLV--NLELLDLGDNQFTGRILGS---IG--DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK 309 (488)
Q Consensus 237 ~l~--~L~~L~L~~~~~~~~~~~~---l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 309 (488)
.++ +|+.|++++|.+.+..+.. +. .+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|..+..
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~ 718 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK 718 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc
Confidence 664 4999999999987544322 22 3458999999999998443344568999999999999998 55544332
Q ss_pred --------CCCCcEEEccCCcCccccchhhh--cccCceeEEEccCCcccccCCccccCCCCccEEEccC------Cccc
Q 041473 310 --------CKNLILLDLSNNNLTGTIPTEVI--GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE------NKLS 373 (488)
Q Consensus 310 --------~~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------n~l~ 373 (488)
+++|+.|++++|.++ .+|..+. .++.+ +.|++++|.+.+ +|..+..+++|+.|++++ |.+.
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred cccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 238999999999998 8888887 77777 899999999996 788888999999999976 7778
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+.+|..+..+++|++|++++|.+. .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|+...
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 899999999999999999999995 5665554 799999999999997777777666677777777776653
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=332.22 Aligned_cols=437 Identities=19% Similarity=0.180 Sum_probs=222.4
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEec
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 95 (488)
...++++++++.++ .+|..+. ++|+.|++++|.+....+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34466777777666 3444332 56777777777776666666777777777777777776555666777777777777
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCccccc-CCccccCCCCCceeecccCCCccCCCCccccccc--ceeecccccc
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP-IPASISNASNLMRLTIQKNGFSGKVPSLENLYKL--QRVSFSLNHL 172 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 172 (488)
++|.++ .+|.. .+++|++|++++|++... .|..+..+++|++|++++|.+.. ..+..+++| +.++++.|.+
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 777766 66655 466777777777766632 24566677777777777766653 234444454 6677666655
Q ss_pred --CCCCCCchhhh--------------------hhhccCCCccEEecCCCcccc----cCchhhhhhhccccEEEccccc
Q 041473 173 --GNGEKDDLEFV--------------------SSLVNASRLEMMEISINNFGG----MLPESVGNLSTRLKRFTVGNNQ 226 (488)
Q Consensus 173 --~~~~~~~~~~~--------------------~~l~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~ 226 (488)
.......+... ..+..++.|+.++++.+.... .....+... +.++.+++.++.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l-~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG-PTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC-SSCEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc-CcceEEEecCCc
Confidence 22111111000 011122333444443331000 000011111 233333333332
Q ss_pred cccc----cchhccCCCCCCEEEccCCcCCCCccccc-----cCCCCccEEEcccccccCCCC-ccccC---CccccEEe
Q 041473 227 LFGN----IPSGLGNLVNLELLDLGDNQFTGRILGSI-----GDLQKLQRLRLKGNKFLGEIP-SSVGN---LTLLFTLS 293 (488)
Q Consensus 227 ~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~---~~~L~~L~ 293 (488)
+... .+.. ...++|++|++++|.+.+..+..+ ..+++|+.+++..+.+ ..| ..+.. ..+|++|+
T Consensus 261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 2211 0011 112245555555554443333222 2233333333333322 111 11111 13455555
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCccccc--CCccccCCCCccEEEccCCc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP--LPSNFGILKNLGVLDVSENK 371 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~ 371 (488)
+++|.+.... ....+++|++|++++|.+.+..|..+..++.+ ++|++++|.+.+. .|..+..+++|++|++++|.
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 5555543221 11345666666666666665555555555555 5666666666532 23445566666666666666
Q ss_pred ccCCCcc-ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 372 LSGEIPN-SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 372 l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+++.+|. .+..+++|++|++++|.++...+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 6643443 355566666666666666543332222 46666666666666 4444444666666666666666632222
Q ss_pred -ccccCCcceeeecCCCCcccc
Q 041473 451 -KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 451 -~~~~~~L~~l~l~~n~~~c~~ 471 (488)
...+++|+.|++++|||.|++
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCH
T ss_pred HHhcCCCCCEEEecCCCcCCCc
Confidence 455666666666666666643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=327.37 Aligned_cols=433 Identities=20% Similarity=0.239 Sum_probs=330.8
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|++++ +|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+....|.+|..+++|++|++++|.++ .+
T Consensus 40 ~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 115 (562)
T 3a79_B 40 NRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI 115 (562)
T ss_dssp TSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EE
T ss_pred CCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-cc
Confidence 356665 555443 79999999999999777789999999999999999999888999999999999999999998 56
Q ss_pred chhhhccCCCcEEecccCCcCCCCC--cchhccCCCCcEEEcCCCcccccCCccccCCCCC--ceeecccCCC--ccCCC
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLP--SDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL--MRLTIQKNGF--SGKVP 154 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~ 154 (488)
|.. .+++|++|++++|.+. .++ ..+. .+++|++|++++|++... .+..++++ ++|++++|.+ ....+
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFD-VLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCS-BCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred Ccc--ccccCCEEECCCCCcc-ccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc
Confidence 665 8999999999999998 544 4554 799999999999988743 34445555 9999999887 43332
Q ss_pred C-c--------------------------ccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCc
Q 041473 155 S-L--------------------------ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207 (488)
Q Consensus 155 ~-~--------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 207 (488)
. + ..+++|+.++++.+.... .........+...+.++.+++..+.+.+...
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC--QRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH--HHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc--chHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 2 2 245567777776653110 0011344566778888889888776544322
Q ss_pred hhhhh--hhccccEEEccccccccccchhc-----cCCCCCCEEEccCCcCCCCccccccC---CCCccEEEcccccccC
Q 041473 208 ESVGN--LSTRLKRFTVGNNQLFGNIPSGL-----GNLVNLELLDLGDNQFTGRILGSIGD---LQKLQRLRLKGNKFLG 277 (488)
Q Consensus 208 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~ 277 (488)
..+.. ..++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ......+.. ..+|+.|++++|.+..
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccc
Confidence 22111 11489999999999987777766 5556666666666555 122122221 2579999999998753
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCcc--ccchhhhcccCceeEEEccCCcccc-cCCc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG--TIPTEVIGLSSLSIYLDLSKNQLNG-PLPS 354 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~ 354 (488)
.. ....+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..++.+ ++|++++|.+.+ ..+.
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSC
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChh
Confidence 32 12688999999999999998889999999999999999999984 234556777777 899999999987 4445
Q ss_pred cccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccC
Q 041473 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 434 (488)
.+..+++|++|++++|.+++..|..+. ++|++|++++|+++ ..|..+.++++|++|++++|+++...+..+..+++|
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence 688899999999999999866666553 79999999999999 455555599999999999999995444448999999
Q ss_pred ceeeccCcccccccCCccc
Q 041473 435 QNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 435 ~~L~l~~n~~~~~~~~~~~ 453 (488)
+.|++++|++.|.++..+.
T Consensus 500 ~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCEECCSCCBCCCHHHHHH
T ss_pred CEEEecCCCcCCCcchHHH
Confidence 9999999999998886554
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=306.95 Aligned_cols=385 Identities=18% Similarity=0.203 Sum_probs=228.6
Q ss_pred EEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccc-ccchhhhccCCCcEEecccC
Q 041473 20 TLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG-EIPFSIYNLSSLSLLDFPVN 98 (488)
Q Consensus 20 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~ 98 (488)
.++.+++.++ .+|. + .++|++|++++|.+....+..|..+++|++|++++|.+.. ..+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555555 3343 2 2456666666666665556666666666666666665542 22445666666666666666
Q ss_pred CcCCCCCcchhccCCCCcEEEcCCCcccccCCc--cccCCCCCceeecccCCCccCCCC--cccccccceeeccccccCC
Q 041473 99 QLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA--SISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGN 174 (488)
Q Consensus 99 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~ 174 (488)
.+.+..|..+. .+++|++|++++|++....+. .+..+++|++|++++|.+....+. +..+++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 66533333333 566666666666666532222 255666666666666666554433 4555555555555555443
Q ss_pred CCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchh--------ccCCCCCCEEEc
Q 041473 175 GEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG--------LGNLVNLELLDL 246 (488)
Q Consensus 175 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~L 246 (488)
.....+... ... .++.++++++.+....+.+ +..+++|++|++
T Consensus 169 ~~~~~l~~l----~~~-------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 169 ICEEDLLNF----QGK-------------------------HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp CCTTTSGGG----TTC-------------------------EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred cChhhhhcc----ccc-------------------------cccccccccCcccccchhhccccccccccccceeeeEec
Confidence 221111000 002 3333333333333221111 123345555666
Q ss_pred cCCcCCCCccccccC---CCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCcccc--CCCCCcEEEccCC
Q 041473 247 GDNQFTGRILGSIGD---LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLG--KCKNLILLDLSNN 321 (488)
Q Consensus 247 ~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 321 (488)
++|.+.+..+..+.. ..+|+.|++++|....... ..+.+....+..+. ..++|+.|++++|
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred CCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCc
Confidence 555554333332222 2556666666554331100 00011111111111 2356777777777
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 401 (488)
.+.+..|..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++...+
T Consensus 286 ~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 286 KIFALLKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cccccchhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 7766666666666666 677777777776667778888889999999998886667788888999999999998887778
Q ss_pred ccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
..|.++++|++|++++|++++..+..+..+++|++|++++|++++.+|....
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 8888899999999999998877777788889999999999999988885443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=316.81 Aligned_cols=477 Identities=23% Similarity=0.233 Sum_probs=342.5
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|++++..+.+|.++++|++|++++|.++++.+++|.++++|++|++++|++....+.+|.++++|++|++++|.++...
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 58999999999999999999999999999777889999999999999999999888889999999999999999999666
Q ss_pred chhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCcccccCCccccCCCCC----ceeecccCCCccCCCC
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL----MRLTIQKNGFSGKVPS 155 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~ 155 (488)
+..|.++++|++|++++|.+.. ..|..+. .+++|++|++++|++....+..+..+.++ ..++++.+.+....+.
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 6779999999999999999973 2344444 79999999999999886666665544332 2455565555433322
Q ss_pred cccccccceeeccccc-------------------------c------CCCCCCch---------------------hhh
Q 041473 156 LENLYKLQRVSFSLNH-------------------------L------GNGEKDDL---------------------EFV 183 (488)
Q Consensus 156 ~~~l~~L~~L~l~~~~-------------------------~------~~~~~~~~---------------------~~~ 183 (488)
......++.+.+..+. . .......+ ...
T Consensus 220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 299 (635)
T 4g8a_A 220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII 299 (635)
T ss_dssp TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence 2111112222211110 0 00000000 001
Q ss_pred hhhccCCCccEEecCCCcccccCchhh------------------hhhhccccEEEccccccccccchhccCCCCCCEEE
Q 041473 184 SSLVNASRLEMMEISINNFGGMLPESV------------------GNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLD 245 (488)
Q Consensus 184 ~~l~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 245 (488)
..+.....++.+.+..+.+........ ......++.+.+..+..... .....+++|+.++
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLD 377 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEE
T ss_pred hhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccch
Confidence 112222344444444333221110000 00012444455544443321 2234678999999
Q ss_pred ccCCcCCC--CccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCC-CccccCCCCCcEEEccCCc
Q 041473 246 LGDNQFTG--RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI-PSSLGKCKNLILLDLSNNN 322 (488)
Q Consensus 246 L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 322 (488)
++.|.+.. ..+..+..+.+|+.+++..+... ..+..+..+++|+.+++..+...... ...+..+++++.++++.|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 99987753 23344556789999999998776 34456778999999999988766443 3567889999999999999
Q ss_pred CccccchhhhcccCceeEEEccCCcc-cccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc
Q 041473 323 LTGTIPTEVIGLSSLSIYLDLSKNQL-NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401 (488)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 401 (488)
+....+..+...+.+ +++++++|.+ ....|..|..+++|++|++++|.+++..|..|.++++|++|++++|+++...+
T Consensus 457 l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred cccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 987777777777777 8999999975 44578889999999999999999998888999999999999999999998888
Q ss_pred ccccCCCCCCEEeccCcccCCccchhhhcc-ccCceeeccCcccccccCCccccCCcce---eeecCCCCcccc------
Q 041473 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENF-FFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGNDNLCGG------ 471 (488)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~---l~l~~n~~~c~~------ 471 (488)
..|.++++|+.|+|++|+++...|..|..+ ++|+.|++++|++.|.|...+...-++. .........|.+
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g 615 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 615 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence 999999999999999999999999999888 5899999999999999886554332321 112223356765
Q ss_pred --ccccccCcchhh
Q 041473 472 --ISELHLSTCSIK 483 (488)
Q Consensus 472 --~~~l~~~~c~~~ 483 (488)
+.++|+ .|+++
T Consensus 616 ~~l~~~~~-~C~~~ 628 (635)
T 4g8a_A 616 MPVLSLNI-TCQMT 628 (635)
T ss_dssp CBGGGCCC-CC---
T ss_pred CEeeeecc-CCCCC
Confidence 556777 48875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=304.32 Aligned_cols=376 Identities=22% Similarity=0.200 Sum_probs=249.6
Q ss_pred cccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCC
Q 041473 44 FLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123 (488)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (488)
.++.+++.+. .+|. +. ++|++|++++|.++...+..+.++++|++|++++|.+.+.++...+..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3455555554 3343 22 678888888888887778888888888888888887765665555557888888888888
Q ss_pred cccccCCccccCCCCCceeecccCCCccCCC---CcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCC
Q 041473 124 QFTGPIPASISNASNLMRLTIQKNGFSGKVP---SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN 200 (488)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~ 200 (488)
++....|..+..+++|++|++++|.+.+..+ .+..+++|++|++++|
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n------------------------------ 139 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN------------------------------ 139 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS------------------------------
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC------------------------------
Confidence 8876667778888888888888877653211 1333333333333333
Q ss_pred cccccCchh-hhhhhccccEEEccccccccccchhccCC--CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC
Q 041473 201 NFGGMLPES-VGNLSTRLKRFTVGNNQLFGNIPSGLGNL--VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 201 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
.+.+..+.. +... ++|++|++++|.+....+..+..+ .+++.|+++++.+.......+..
T Consensus 140 ~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 202 (455)
T 3v47_A 140 NIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------- 202 (455)
T ss_dssp BCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------
T ss_pred ccCccCcccccCCC-CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------------
Confidence 222222222 1122 345555555555444444444333 34455555555444322211100
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccC---CCCCcEEEccCCcCcc----------ccchhhhc--ccCceeEEE
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK---CKNLILLDLSNNNLTG----------TIPTEVIG--LSSLSIYLD 342 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~----------~~~~~~~~--~~~l~~~L~ 342 (488)
.....+..+++|++|++++|.+.+..+..+.. .++|+.|++++|...+ ..+..+.. ...+ ++++
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~ 281 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KTCD 281 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC-CEEE
T ss_pred cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc-eEEE
Confidence 00000113344555555555444333332222 1445555555443221 11112222 2344 8999
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
+++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+++
T Consensus 282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 99999998889999999999999999999997778899999999999999999998888999999999999999999998
Q ss_pred ccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
..|..|..+++|++|++++|++++..+. ...+++|+.|++++||+.|++
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 8899999999999999999999865443 467899999999999999876
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=293.55 Aligned_cols=256 Identities=20% Similarity=0.224 Sum_probs=206.5
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
+|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 55555555555555555667777778888888777776666677777888888888887775555567778888888888
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+.+..+..+..+++|+.|++++|...+.++........+ ++|++++|.+....+..+..+++|++|++++|.++..
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 888776666677888888888888887766677666655555 7888888888855556788889999999999999877
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccC
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFS 455 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 455 (488)
.+..|..+++|++|++++|++....+..|.++++|+.|++++|.++...+..|..+++|++|++++|++.+.++..+.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHh
Confidence 77788899999999999999998888999999999999999999998888888999999999999999999888878777
Q ss_pred CcceeeecCCCCccccc
Q 041473 456 NSSAISLDGNDNLCGGI 472 (488)
Q Consensus 456 ~L~~l~l~~n~~~c~~~ 472 (488)
....+.+.++...|.+-
T Consensus 344 ~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 344 RRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTTSSCCTTCCCBEEES
T ss_pred hhhccccCccCceeCCc
Confidence 77778888898999763
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=283.06 Aligned_cols=394 Identities=25% Similarity=0.316 Sum_probs=246.4
Q ss_pred CCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCc-------------cEEEeecccccccc
Q 041473 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM-------------RSIGFGANKLSGEI 80 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~l~~~~ 80 (488)
...+|+++++++|.+ +.+|.++.++++|++|++++|.+.+..|..++.+++| ++|++++|.++ .+
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 358899999999999 4889999999999999999999988889988888775 89999999887 34
Q ss_pred chhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCccccc
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLY 160 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 160 (488)
|.. .++|++|++++|.++ .+|.. .++|+.|++++|++.. .+.. .++|++|++++|.+.. .+.+..++
T Consensus 87 p~~---~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCT
T ss_pred CCC---cCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCC
Confidence 442 368999999999988 57753 4789999999998873 3321 2689999999998886 44688899
Q ss_pred ccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCC
Q 041473 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 240 (488)
+|+++++++|.+...+. ....|+.++++++.+.+ ++ .+... ++|++|++++|.++. .|.. .++
T Consensus 154 ~L~~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~-l~-~~~~l-~~L~~L~l~~N~l~~-l~~~---~~~ 216 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEE-LP-ELQNL-PFLTAIYADNNSLKK-LPDL---PLS 216 (454)
T ss_dssp TCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCSS-CCCC---CTT
T ss_pred CCCEEECCCCcCcccCC----------CcccccEEECcCCcCCc-Cc-cccCC-CCCCEEECCCCcCCc-CCCC---cCc
Confidence 99999999888765332 12478888888887765 33 34444 588888888888774 3322 257
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
|++|++++|.+.. .+ .+..+++|++|++++|.+.. .+. .+++|++|++++|.+.+ +|.. .++|++|++++
T Consensus 217 L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 8888888888773 33 37788888888888888764 332 24788888888888874 4432 36788888888
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+++ ++. .+..+++|++++|.+.+ ++. ..++|++|++++|.++ .+|.. +++|++|++++|.++. .
T Consensus 287 N~l~~-l~~----~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l~~-l 352 (454)
T 1jl5_A 287 NIFSG-LSE----LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE-V 352 (454)
T ss_dssp SCCSE-ESC----CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-C
T ss_pred CccCc-ccC----cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCccc-ccccc---CCcCCEEECCCCcccc-c
Confidence 88773 332 11233788888888874 221 1257888888888888 45543 5788888888888874 4
Q ss_pred cccccCCCCCCEEeccCcccCC--ccchhhhcc-------------ccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSG--RIPKYFENF-------------FFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++. | ..+.+++.|.+.+|
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~--~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-P--DIPESVEDLRMNSE 426 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc-c--cchhhHhheeCcCc
Confidence 44 46888889998888887 577777766 6777778877777751 1 12255666777666
Q ss_pred CCcc
Q 041473 466 DNLC 469 (488)
Q Consensus 466 ~~~c 469 (488)
...|
T Consensus 427 ~~~~ 430 (454)
T 1jl5_A 427 RVVD 430 (454)
T ss_dssp ----
T ss_pred ccCC
Confidence 5544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=281.76 Aligned_cols=345 Identities=29% Similarity=0.396 Sum_probs=164.1
Q ss_pred CcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEE
Q 041473 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118 (488)
Q Consensus 39 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 118 (488)
+++++.|+++++.+.. ++ .+..+++|++|++++|.++.. +. +.++++|++|++++|.+. .++. + ..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh-h-cCCCCCCEE
Confidence 3445555555554432 22 244455555555555555422 22 455555555555555554 3332 2 245555555
Q ss_pred EcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecC
Q 041473 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEIS 198 (488)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~ 198 (488)
++++|.+... +. +..+++|++|++++|.+... +.+..+++|+.+++.. .+.. ...+..++.|+.++++
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~-~~~~--------~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGN-QVTD--------LKPLANLTTLERLDIS 185 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEE-SCCC--------CGGGTTCTTCCEEECC
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCC-cccC--------chhhccCCCCCEEECc
Confidence 5555554422 21 45555555555555544432 2244555555555531 1110 1113344444444444
Q ss_pred CCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC
Q 041473 199 INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 278 (488)
++.+.+. ..+... ++|++|++++|.+....+ ++.+++|++|++++|.+... ..+..+++|+.|++++|.+.+.
T Consensus 186 ~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 186 SNKVSDI--SVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp SSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 4433321 112222 345555555555443322 44455555555555554432 2344455555555555554432
Q ss_pred CCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccC
Q 041473 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~ 358 (488)
.+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+ .+..+ +..
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l-------------------------~~~~~--~~~ 307 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL-------------------------EDISP--ISN 307 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC-------------------------SCCGG--GGG
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcc-------------------------cCchh--hcC
Confidence 22 4445555555555554443222 44444555555555544 42222 444
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceee
Q 041473 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLN 438 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 438 (488)
+++|++|++++|.+++..| +..+++|++|++++|.+.+. ..+.++++|+.|++++|++++..| +..+++|+.|+
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 5556666666665553333 44556666666666655532 345555666666666666654444 55556666666
Q ss_pred ccCccccc
Q 041473 439 LSSNHFEG 446 (488)
Q Consensus 439 l~~n~~~~ 446 (488)
+++|++++
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 66666554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=281.17 Aligned_cols=346 Identities=21% Similarity=0.208 Sum_probs=218.8
Q ss_pred CcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEeccc
Q 041473 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPV 97 (488)
Q Consensus 18 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (488)
-+.++.+++.++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.++...|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357777777777 5565443 5788999999998877788888999999999999988877788888889999999999
Q ss_pred CCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCC
Q 041473 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGE 176 (488)
Q Consensus 98 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 176 (488)
|.+. .+|...+..+++|++|++++|++....+..+..+++|++|++++|.+....+. +..+
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------- 151 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL----------------- 151 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-----------------
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-----------------
Confidence 8888 77766655788888888888888766666777777777777776654332211 1111
Q ss_pred CCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc
Q 041473 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256 (488)
Q Consensus 177 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 256 (488)
++|++|++++|.++...+..+..+++|+.|++++|.+.....
T Consensus 152 --------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 152 --------------------------------------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp --------------------------------------TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred --------------------------------------CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 244444444444444444445566666666666666655444
Q ss_pred ccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccC
Q 041473 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSS 336 (488)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 336 (488)
..+..+++|+.|++++|...+..+.. .....+|++|++++|.++...+..+..++.
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPN------------------------CLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTT------------------------TTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hhcccCcccceeeCCCCccccccCcc------------------------cccCccccEEECcCCcccccCHHHhcCccc
Confidence 45555566666666655443333332 223334555555555554222223333444
Q ss_pred ceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEecc
Q 041473 337 LSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416 (488)
Q Consensus 337 l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 416 (488)
+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 250 L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 L-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp C-CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred c-CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 4 555555555554555556666777777777777776666667777777777777777776666667777777777777
Q ss_pred CcccCCccc-hhhhccccCceeeccCcccccccC
Q 041473 417 RNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 417 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
+|++..... .++ ......+.+.++...+..|
T Consensus 329 ~N~l~c~c~~~~~--~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 329 SNPLACDCRLLWV--FRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SSCEECSGGGHHH--HTTTTSSCCTTCCCBEEES
T ss_pred CCCccCccchHhH--HhhhhccccCccCceeCCc
Confidence 777663321 222 2233444555555555444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=277.21 Aligned_cols=348 Identities=27% Similarity=0.373 Sum_probs=268.4
Q ss_pred cCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCc
Q 041473 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLM 140 (488)
Q Consensus 61 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 140 (488)
..+++++.|+++++.+. .++ .+..+++|++|++++|.+. .++. + ..+++|++|++++|.+... +. +..+++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADI-TP-LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccC-hh-hcCCCCCC
Confidence 34678899999998887 455 4778899999999999888 6665 3 4789999999999988743 33 88889999
Q ss_pred eeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEE
Q 041473 141 RLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRF 220 (488)
Q Consensus 141 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 220 (488)
+|++++|.+....+ +..+++|++|++++|.+... ..+..++ +|+++
T Consensus 116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~~~~l~-------------------------~L~~L 161 (466)
T 1o6v_A 116 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDI--------SALSGLT-------------------------SLQQL 161 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC--------GGGTTCT-------------------------TCSEE
T ss_pred EEECCCCCCCCChH-HcCCCCCCEEECCCCccCCC--------hhhccCC-------------------------cccEe
Confidence 99999888776543 77778888888887766532 1133333 55555
Q ss_pred EccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccC
Q 041473 221 TVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300 (488)
Q Consensus 221 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (488)
.+.+ .+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.
T Consensus 162 ~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFGN-QVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEEE-SCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecCC-cccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 5542 222221 267778888888888877643 346677888888888887765443 667888888888888877
Q ss_pred CCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc
Q 041473 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL 380 (488)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 380 (488)
+. ..+..+++|+.|++++|.+.+..+ +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++..+ +
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 305 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL-TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 305 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC-SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC-CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h
Confidence 43 457778888899998888874433 5566666 888999988875444 7788999999999999985433 7
Q ss_pred ccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCccee
Q 041473 381 GSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAI 460 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l 460 (488)
..+++|++|++++|.+.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| ...+++|+.|
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQL 380 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEE
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEE
Confidence 889999999999999986554 78899999999999999865 478899999999999999997776 8889999999
Q ss_pred eecCCCCccc
Q 041473 461 SLDGNDNLCG 470 (488)
Q Consensus 461 ~l~~n~~~c~ 470 (488)
++++|++...
T Consensus 381 ~l~~n~~~~~ 390 (466)
T 1o6v_A 381 GLNDQAWTNA 390 (466)
T ss_dssp ECCCEEEECC
T ss_pred eccCCcccCC
Confidence 9999998873
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=277.49 Aligned_cols=384 Identities=24% Similarity=0.270 Sum_probs=267.9
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCccc-------------ccccccccccccccchhhcCCCCcc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSL-------------EFLSAAVNQFVGQIPETLSELKRMR 67 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~~~~l~~L~ 67 (488)
+|.+ +.+|++++++++|++|++++|.+.+..|..+.++++| ++|+++++.+.+. |. ..++|+
T Consensus 20 ~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~ 94 (454)
T 1jl5_A 20 SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLE 94 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCS
T ss_pred cCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCC
Confidence 3667 8999999999999999999999988899999988875 8899999988753 33 237899
Q ss_pred EEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccC
Q 041473 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147 (488)
Q Consensus 68 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (488)
+|++++|.+++ +|.. +++|++|++++|.+. .++.. .++|++|++++|++.. .| .+..+++|++|++++|
T Consensus 95 ~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 95 SLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred EEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 99999999985 6643 479999999999998 56542 3699999999999984 66 5999999999999999
Q ss_pred CCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcccccc
Q 041473 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL 227 (488)
Q Consensus 148 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 227 (488)
.+...... .++|++|++++|.+...+ .+..++.|+.++++++.+.+ ++.. .++|++|++++|.+
T Consensus 164 ~l~~lp~~---~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 164 SLKKLPDL---PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCC
T ss_pred cCcccCCC---cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcC
Confidence 98864432 358999999999887532 36788999999999998764 3322 25899999999998
Q ss_pred ccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccc
Q 041473 228 FGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSL 307 (488)
Q Consensus 228 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 307 (488)
. .+|. ++.+++|++|++++|.+.+.. . .+++|+.|++++|.+.+ .+. .+++|++|++++|.+.+. +. +
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~l-~~-~ 295 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGL-SE-L 295 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEE-SC-C
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCcc-cC-c
Confidence 8 5554 889999999999999887532 2 24799999999999875 343 248999999999998752 21 1
Q ss_pred cCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCC
Q 041473 308 GKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387 (488)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (488)
.++|+.|++++|.+++ ++ ..+..+++|++++|.+.+ +|.. +++|++|++++|.++ .+|. .+++|+
T Consensus 296 --~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp --CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred --CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 2689999999999883 33 233334899999999985 4543 589999999999998 6776 478999
Q ss_pred EEecCCccccc--cCcccccCC-------------CCCCEEeccCcccCC--ccchhhhccccCceeeccCcccccccC
Q 041473 388 QLVMNGNFFQG--NIPSSFSSL-------------RGIQNLDLSRNNLSG--RIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 388 ~L~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
+|++++|.+.. ..|..+..+ ++|+.|++++|++++ .+| ++++.|.+.+|.+.+..+
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccc
Confidence 99999999987 567777776 899999999999986 444 357778889998876544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=269.00 Aligned_cols=362 Identities=19% Similarity=0.243 Sum_probs=219.4
Q ss_pred cccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhh
Q 041473 5 VGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSI 84 (488)
Q Consensus 5 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 84 (488)
.+.-+.+++.+++|++|++++|.+++. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++ ++ +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c
Confidence 344445666677777777777777743 4 567777777777777777643 2 6677777777777777764 22 6
Q ss_pred hccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccce
Q 041473 85 YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQR 164 (488)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 164 (488)
.++++|++|++++|.++ .++ + ..+++|++|++++|++.. . .+..+++|++|++++|...+.. .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-eec--C-CCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc-ccccCCcCCE
Confidence 67777777777777776 454 2 256777777777777763 2 2566777777777776443333 3556666777
Q ss_pred eeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEE
Q 041473 165 VSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELL 244 (488)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 244 (488)
|++++|.+...+ +..++.|+.++++.+.+.+. .+... ++|++|++++|.++. +| ++.+++|++|
T Consensus 175 L~ls~n~l~~l~---------l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 175 LDCSFNKITELD---------VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp EECCSSCCCCCC---------CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred EECCCCccceec---------cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 777666654321 33444555555555544332 12222 344444444444443 22 3444444444
Q ss_pred EccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc
Q 041473 245 DLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 245 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 324 (488)
++++|.+.+.. +..+++|+.|+++++ +|+.+++++|...+..| +..+++|+.|++++|...
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 44444444322 223344444444332 34455555555444443 356778888888888766
Q ss_pred cccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccc
Q 041473 325 GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF 404 (488)
Q Consensus 325 ~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 404 (488)
+.+|... ..+ +.++ +..+++|++|++++|.+++ ++ +..+++|+.|++++|++++
T Consensus 300 ~~l~~~~---~~L-~~L~-------------l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~------ 353 (457)
T 3bz5_A 300 YLLDCQA---AGI-TELD-------------LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD------ 353 (457)
T ss_dssp CEEECTT---CCC-SCCC-------------CTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB------
T ss_pred ceeccCC---Ccc-eEec-------------hhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC------
Confidence 5555322 111 2222 3445788889999998885 33 7788889999999988873
Q ss_pred cCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 405 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
++.|..|++++|.+.+. ..+..|..+++++|.+++.+|.
T Consensus 354 --l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 354 --FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp --CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred --ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 35666777888877744 3556788888999998888774
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=260.51 Aligned_cols=260 Identities=29% Similarity=0.500 Sum_probs=238.3
Q ss_pred ccccEEEcccccccc--ccchhccCCCCCCEEEccC-CcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccE
Q 041473 215 TRLKRFTVGNNQLFG--NIPSGLGNLVNLELLDLGD-NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 291 (488)
.+++.|+++++.+.+ ..|..+..+++|++|++++ +.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 378999999999987 7888999999999999995 8888778888999999999999999998788888999999999
Q ss_pred EecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCc
Q 041473 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371 (488)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 371 (488)
|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+...+++|++++|.+.+..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999899999999999999999999999889999988884449999999999988999998887 9999999999
Q ss_pred ccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 372 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
+++..|..+..+++|+.|++++|.++...+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988899999999999999999999855554 788999999999999999899999999999999999999999999998
Q ss_pred cccCCcceeeecCCCCccccccccccCcc
Q 041473 452 GVFSNSSAISLDGNDNLCGGISELHLSTC 480 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~c~~~~~l~~~~c 480 (488)
+.+++|+.+++++||+.|+. +++.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~----p~~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS----PLPAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST----TSSCC
T ss_pred ccccccChHHhcCCCCccCC----CCCCC
Confidence 99999999999999999985 44456
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=261.43 Aligned_cols=334 Identities=20% Similarity=0.225 Sum_probs=180.8
Q ss_pred CCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCcee
Q 041473 63 LKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142 (488)
Q Consensus 63 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 142 (488)
+.++++|+++++.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 466777777777766433344566777777777777666 4444333356677777777776665555556666666666
Q ss_pred ecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 143 TIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 143 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
++++|.+....+. +..++ +|++|+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~-------------------------------------------------------~L~~L~ 147 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTP-------------------------------------------------------KLTTLS 147 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCT-------------------------------------------------------TCCEEE
T ss_pred ECCCCccCcCCHHHhcCCC-------------------------------------------------------CCcEEE
Confidence 6666655433322 22333 344444
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (488)
+++|.+....+..+..+++|++|++++|.+.... +..+++|+.|++++|.+.. +...++|++|++++|.+..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc-----cCCCCcceEEECCCCeeee
Confidence 4444444333444555566666666666554321 3344556666666654431 2233455666666655542
Q ss_pred CCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc
Q 041473 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381 (488)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 381 (488)
. +.. ..++|+.|++++|.+++. ..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++ .++..+.
T Consensus 220 ~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 292 (390)
T 3o6n_A 220 V-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292 (390)
T ss_dssp E-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSS
T ss_pred c-ccc--ccccccEEECCCCCCccc--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccC
Confidence 2 211 124566666666655522 233344444 55555555555444555555666666666666665 3444445
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceee
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAIS 461 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~ 461 (488)
.+++|++|++++|.+. ..+..+..+++|++|++++|+++.. + +..+++|++|++++|++.+.. ....+..+....
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~ 367 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPA 367 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTT
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhc
Confidence 5566666666666655 3344455556666666666666533 2 445556666666666665432 223344455555
Q ss_pred ecCCCCccccc
Q 041473 462 LDGNDNLCGGI 472 (488)
Q Consensus 462 l~~n~~~c~~~ 472 (488)
+.+++..|.+-
T Consensus 368 ~~~~~~~c~~~ 378 (390)
T 3o6n_A 368 VDDADQHCKID 378 (390)
T ss_dssp BCCCCSCCCTT
T ss_pred ccccCceeccc
Confidence 55565555543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=262.73 Aligned_cols=349 Identities=19% Similarity=0.196 Sum_probs=215.5
Q ss_pred CCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCC
Q 041473 26 NNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLP 105 (488)
Q Consensus 26 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 105 (488)
.......+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++ ++ +..+++|++|++++|.++ .++
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~-~~~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc-eee
Confidence 334434445667777888888888777643 4 57777888888888887774 33 667777888888887777 444
Q ss_pred cchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhh
Q 041473 106 SDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSS 185 (488)
Q Consensus 106 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
+. .+++|++|++++|++.. .+ +..+++|++|++++|.+.+. .+..+++|++++++.|....
T Consensus 102 --~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~----------- 162 (457)
T 3bz5_A 102 --VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKIT----------- 162 (457)
T ss_dssp --CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCC-----------
T ss_pred --cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccc-----------
Confidence 33 57778888887777763 33 66777777777777776653 25566666666666553211
Q ss_pred hccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCc
Q 041473 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKL 265 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 265 (488)
.+ .+... ++|++|++++|.++. .+ ++.+++|++|++++|.+.+. .+..+++|
T Consensus 163 -------------------~~--~~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L 214 (457)
T 3bz5_A 163 -------------------KL--DVTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQL 214 (457)
T ss_dssp -------------------CC--CCTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTC
T ss_pred -------------------cc--ccccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCC
Confidence 11 01111 366666666666654 22 56667777777777777643 25667777
Q ss_pred cEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccC
Q 041473 266 QRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345 (488)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~ 345 (488)
+.|++++|.+.+ .| +..+++|++|++++|.+.+.. ...+++|+.|+++++.+. .+++++
T Consensus 215 ~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~---------------~L~l~~ 273 (457)
T 3bz5_A 215 TFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL---------------EIDLTH 273 (457)
T ss_dssp SEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCS---------------CCCCTT
T ss_pred CEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCC---------------EEECCC
Confidence 777777777764 33 667777777777777776543 334566666666665432 344555
Q ss_pred CcccccCCccccCCCCccEEEccCCcccCCCcc--------ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 346 NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN--------SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
|.+.+.+| +..+++|+.|++++|...+.+|. .+.++++|++|++++|+++.. .+.++++|+.|++++
T Consensus 274 n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 274 NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVN 348 (457)
T ss_dssp CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCS
T ss_pred CccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCC
Confidence 55443333 34556677777777765444332 133445666666666666642 256666666666666
Q ss_pred cccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 418 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
|++++ ++.|..|++++|.+.+. +.+..+..+++++|
T Consensus 349 N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 349 AHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNN 384 (457)
T ss_dssp SCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTT
T ss_pred CCCCC--------ccccccccccCCcEEec----ceeeecCccccccC
Confidence 66663 24555566666666554 23455566666666
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=251.08 Aligned_cols=194 Identities=24% Similarity=0.325 Sum_probs=95.3
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
+..+++|++|+++++.+..... +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 3444445555555544432221 3444455555555554432211 3444455555555544442222 34444555
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.++ ..+ + +..+++|++|++++|.++. + ..+..+++|++|++++|
T Consensus 225 ~L~l~~n~l~-~~~------------------------~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 225 SLKIGNNKIT-DLS------------------------P--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EEECCSSCCC-CCG------------------------G--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred EEEccCCccC-CCc------------------------c--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCC
Confidence 5555555443 111 1 3344555555555555542 2 23445555566666555
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCC
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGND 466 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 466 (488)
.+.+. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| ...+++|+.|++++|+
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 55532 235555666666666666655555556666666666666666554433 4455555555555554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=249.21 Aligned_cols=212 Identities=23% Similarity=0.339 Sum_probs=143.5
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
+..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+ ++|+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l------------------------~~L~ 180 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANL------------------------TDLY 180 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGC------------------------TTCS
T ss_pred hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccC------------------------CCCC
Confidence 444555555555555333222 224455555555555555442221 3444 4455
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.+. .++. +..++.+ +++++++|.+.+..+ +..+++|++|++++|.++. .+. +..+++|++|++++|
T Consensus 181 ~L~l~~n~l~-~~~~-~~~l~~L-~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 181 SLSLNYNQIE-DISP-LASLTSL-HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp EEECTTSCCC-CCGG-GGGCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred EEEccCCccc-cccc-ccCCCcc-ceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCC
Confidence 5555555444 2222 3333344 555555555553322 5677899999999999984 443 889999999999999
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCc-----
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNL----- 468 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~----- 468 (488)
.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+. ...+++|+.|++++|+..
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 329 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGG
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccCh
Confidence 99853 5688999999999999999865 4688999999999999999876543 567899999999999976
Q ss_pred --cccccccccCcchhhh
Q 041473 469 --CGGISELHLSTCSIKE 484 (488)
Q Consensus 469 --c~~~~~l~~~~c~~~~ 484 (488)
+..+++|++++|++++
T Consensus 330 ~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIKK 347 (347)
T ss_dssp GGCTTCSEESSSCC----
T ss_pred hhhhccceeehhhhcccC
Confidence 5568899999999874
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=273.34 Aligned_cols=344 Identities=19% Similarity=0.223 Sum_probs=222.1
Q ss_pred CCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCcee
Q 041473 63 LKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142 (488)
Q Consensus 63 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 142 (488)
+.+++.++++++.+....+..+.++++|++|++++|.+. .++...+..+++|+.|++++|.+....+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456677777777666444445566677777777777666 3433333356667777776666665555556666666666
Q ss_pred ecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 143 TIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 143 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
++++|.+...++. +..++ +|++|+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~-------------------------------------------------------~L~~L~ 153 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTP-------------------------------------------------------KLTTLS 153 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCT-------------------------------------------------------TCCEEE
T ss_pred EeeCCCCCCCCHHHhccCC-------------------------------------------------------CCCEEE
Confidence 6666655433332 22333 455555
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (488)
+++|.+....+..++.+++|++|++++|.+.... +..+++|+.|++++|.+.. +...++|++|++++|.+..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence 5555555445555666667777777776665432 3445667777777665441 3344567777777776653
Q ss_pred CCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc
Q 041473 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381 (488)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 381 (488)
.. ..+ .++|+.|++++|.+++ +..+..++.+ ++|++++|.+.+..|..|..+++|++|++++|.++ .+|..+.
T Consensus 226 ~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 298 (597)
T 3oja_B 226 VR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298 (597)
T ss_dssp EE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSS
T ss_pred cc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccc
Confidence 22 222 2567777777777763 2445555655 67777777777667777778888888888888887 4566666
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceee
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAIS 461 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~ 461 (488)
.+++|+.|++++|.+. ..|..+..+++|+.|++++|.++... +..+++|+.|++++|++.+.+. ...+..+....
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~ 373 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPA 373 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTT
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhc
Confidence 7788888888888887 45666677888888888888887442 5567788888888888886543 33455666666
Q ss_pred ecCCCCccccccccccCcchh
Q 041473 462 LDGNDNLCGGISELHLSTCSI 482 (488)
Q Consensus 462 l~~n~~~c~~~~~l~~~~c~~ 482 (488)
+.+++..|+.-..+...-|+.
T Consensus 374 ~~~~~~~C~~~~~~~~~~cc~ 394 (597)
T 3oja_B 374 VDDADQHCKIDYQLEHGLCCK 394 (597)
T ss_dssp BCCCCCCCCTTCEEETTEEEE
T ss_pred cccccccCCcchhccCCcccc
Confidence 778888888777766666653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=258.79 Aligned_cols=309 Identities=20% Similarity=0.201 Sum_probs=185.0
Q ss_pred CcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEE
Q 041473 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118 (488)
Q Consensus 39 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 118 (488)
+++++.++++++.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence 466677777777666555555666777777777777766555556667777777777777766 4444433356777777
Q ss_pred EcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEec
Q 041473 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197 (488)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 197 (488)
++++|++....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+...+ +..++.|+.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHANV 193 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GGGCTTCSEEEC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------cccccccceeec
Confidence 7777766633333356677777777777766655443 666677777777666554321 222333444444
Q ss_pred CCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC
Q 041473 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
+.+ .+.. +...++|++|++++|.+..... ..+++|+.|++++|.+.+
T Consensus 194 ~~n-------------------------~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 194 SYN-------------------------LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CSS-------------------------CCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCC
T ss_pred ccc-------------------------cccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCcc
Confidence 433 3321 1222345555555555543211 123456666666665553
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~ 357 (488)
. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++..+..++.+ ++|++++|++. .+|..+.
T Consensus 241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGHH
T ss_pred c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCC-CEEECCCCcce-ecCcccc
Confidence 2 34556666666666666666555666666666666666666665 344444445555 66777777666 4445566
Q ss_pred CCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
.+++|++|++++|.++ .++ +..+++|++|++++|.+..
T Consensus 316 ~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp HHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred ccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence 6777888888888777 333 5567788888888887764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=264.39 Aligned_cols=308 Identities=19% Similarity=0.203 Sum_probs=175.3
Q ss_pred CcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEE
Q 041473 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118 (488)
Q Consensus 39 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 118 (488)
+.+++.++++++.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 466777777777777666666777777888888777777666667777777888888877777 5555544467778888
Q ss_pred EcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEec
Q 041473 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197 (488)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 197 (488)
++++|.+....+..|..+++|++|++++|.+....+. +..+++|+.|++++|.+...+ +..++.|+.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~l 199 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHANV 199 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEEC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhhc
Confidence 8877777744444467777788888877777766554 677777777777777665321 223344555555
Q ss_pred CCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC
Q 041473 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
+++.+.. +...++|++|++++|.+...... ..++|+.|++++|.+.+
T Consensus 200 ~~n~l~~------------------------------l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 200 SYNLLST------------------------------LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD 246 (597)
T ss_dssp CSSCCSE------------------------------EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC
T ss_pred ccCcccc------------------------------ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC
Confidence 5443322 11223344444444443321111 11344455555544432
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~ 357 (488)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..++.+ ++|++++|.+. .+|..+.
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCC-cEEECCCCCCC-ccCcccc
Confidence 133444555555555555554444444555555555555555544 233333334444 45555555554 3344445
Q ss_pred CCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccc
Q 041473 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 397 (488)
.+++|++|++++|.++. ++ +..+++|+.|++++|.+.
T Consensus 322 ~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCC
Confidence 55556666666655552 22 334555666666665554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-34 Score=277.80 Aligned_cols=160 Identities=18% Similarity=0.099 Sum_probs=83.2
Q ss_pred CccccEEecCCCccCCC----CCccccCCCCCcEEEccCCcCccccchhhhcc-----cCceeEEEccCCccccc----C
Q 041473 286 LTLLFTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGL-----SSLSIYLDLSKNQLNGP----L 352 (488)
Q Consensus 286 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~l~~~L~l~~~~~~~~----~ 352 (488)
+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+... +.+ ++|++++|.+.+. .
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHH
Confidence 34444444444444321 23333344555555555554442222222111 122 5555555555432 2
Q ss_pred CccccCCCCccEEEccCCcccCCCcccccc-----CCCCCEEecCCccccc----cCcccccCCCCCCEEeccCcccCCc
Q 041473 353 PSNFGILKNLGVLDVSENKLSGEIPNSLGS-----CVRLEQLVMNGNFFQG----NIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 353 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ ..+..+..+++|++|++++|+++..
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 334455567777777777666443333322 5677777777777764 4455666677777777777777654
Q ss_pred cchhhh-c----cccCceeeccCccccc
Q 041473 424 IPKYFE-N----FFFLQNLNLSSNHFEG 446 (488)
Q Consensus 424 ~~~~l~-~----l~~L~~L~l~~n~~~~ 446 (488)
....+. . ..+|+.|.+.++....
T Consensus 414 ~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 414 GILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHhccCCcchhheeecccccCH
Confidence 333332 1 2346666666665543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=233.16 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=117.6
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCC--CccccccCCCCccEEEcccccccCCCCccccCCccccEEe
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG--RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 293 (488)
+|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. .+..+ .++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEE
Confidence 56666666666665555566777777777777776642 334445555666666666655542 22211 13444444
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+.+..+..+..+++|+ +|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~-------------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLA-------------------------KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCC-------------------------EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhcCCCCCC-------------------------EEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 444444433333444444444 4444444444444445666677777777777777
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccC------CCCCCEEeccCcccCC--ccchhhhccccCceeeccCcc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS------LRGIQNLDLSRNNLSG--RIPKYFENFFFLQNLNLSSNH 443 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 443 (488)
.+|..+..+++|++|++++|.++...+..|.. .+.|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 66666777777777777777777665555543 3677788888887753 456677777778888887774
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=232.41 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=93.9
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
++++++++++.++ .+|..+ .++|+.|++++|.+....+..|..+++|++|++++|.++...|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888888888777 555544 2578888888888876767778888888888888888876667778888888888888
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCc
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFS 150 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 150 (488)
+|.+. .+|..++ ++|++|++++|++....+..+..+++|++|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 88877 7776553 67888888877777544455667777777777766553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-33 Score=270.66 Aligned_cols=379 Identities=16% Similarity=0.108 Sum_probs=262.2
Q ss_pred CCccEEEeeccccccccchh-hhccCCCcEEecccCCcCCC----CCcchhccCCCCcEEEcCCCcccccCCccc-cCCC
Q 041473 64 KRMRSIGFGANKLSGEIPFS-IYNLSSLSLLDFPVNQLQGS----LPSDIGFTLPNLEVLNFGNNQFTGPIPASI-SNAS 137 (488)
Q Consensus 64 ~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~ 137 (488)
++|++|+++++.++...... +..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+....+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 57899999999887443333 77889999999999987621 233333 57889999999888764333322 2333
Q ss_pred ----CCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhh
Q 041473 138 ----NLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNL 213 (488)
Q Consensus 138 ----~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 213 (488)
+|++|++++|.+..... ......+..++.|+.++++++.+.+.....+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~-------------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGC-------------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH-------------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred hCCCceeEEEccCCCCCHHHH-------------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 57777777776553210 0223334444555555555555443333322221
Q ss_pred ----hccccEEEcccccccccc----chhccCCCCCCEEEccCCcCCCCcccccc-----CCCCccEEEcccccccCC--
Q 041473 214 ----STRLKRFTVGNNQLFGNI----PSGLGNLVNLELLDLGDNQFTGRILGSIG-----DLQKLQRLRLKGNKFLGE-- 278 (488)
Q Consensus 214 ----~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-- 278 (488)
.++|++|++++|.++... +..+..+++|++|++++|.+.......+. ..++|++|++++|.+.+.
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 236888888888776532 45566778999999998887643333332 256899999999987753
Q ss_pred --CCccccCCccccEEecCCCccCCCC-----CccccCCCCCcEEEccCCcCccc----cchhhhcccCceeEEEccCCc
Q 041473 279 --IPSSVGNLTLLFTLSFEGNRLEGSI-----PSSLGKCKNLILLDLSNNNLTGT----IPTEVIGLSSLSIYLDLSKNQ 347 (488)
Q Consensus 279 --~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~L~l~~~~ 347 (488)
++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+++. ++..+..++.+ ++|++++|.
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~ 295 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCC
Confidence 3455667899999999999876432 22333588999999999998843 56666667777 899999999
Q ss_pred ccccCCccccC-----CCCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccCcccccC-----CCCCCEE
Q 041473 348 LNGPLPSNFGI-----LKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS-----LRGIQNL 413 (488)
Q Consensus 348 ~~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L 413 (488)
+.+..+..+.. .++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .++|++|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 87544433332 36999999999999854 4566778899999999999998655544432 6799999
Q ss_pred eccCcccCC----ccchhhhccccCceeeccCcccccc-cCC----c-cccCCcceeeecCCCCcc
Q 041473 414 DLSRNNLSG----RIPKYFENFFFLQNLNLSSNHFEGE-VPI----K-GVFSNSSAISLDGNDNLC 469 (488)
Q Consensus 414 ~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~-~~~----~-~~~~~L~~l~l~~n~~~c 469 (488)
++++|.++. .++..+..+++|++|++++|++++. ... . ....+|+.|.+.++.+.+
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 999999986 6788889999999999999998853 111 0 123467888887776654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=236.24 Aligned_cols=255 Identities=29% Similarity=0.488 Sum_probs=226.4
Q ss_pred CCccEEecCCCcccc--cCchhhhhhhccccEEEccc-cccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCcc
Q 041473 190 SRLEMMEISINNFGG--MLPESVGNLSTRLKRFTVGN-NQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266 (488)
Q Consensus 190 ~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 266 (488)
.+++.++++++.+.+ .++..+..+ ++|++|++++ +.+....|..++.+++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356777777777766 667777766 5899999995 888878888899999999999999999877888899999999
Q ss_pred EEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCC-CCcEEEccCCcCccccchhhhcccCceeEEEccC
Q 041473 267 RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK-NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345 (488)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~ 345 (488)
+|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+.+|..+..+. + ++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcC
Confidence 999999999888888899999999999999999888899999888 999999999999988998888876 4 8999999
Q ss_pred CcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc
Q 041473 346 NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.++...|..+..+++|++|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988999999999999999999999855554 7889999999999999998899999999999999999999998888
Q ss_pred hhhhccccCceeeccCcccccccC
Q 041473 426 KYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 426 ~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
.. ..+++|+.+++++|+..+..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CC-ccccccChHHhcCCCCccCCC
Confidence 76 889999999999999665433
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-29 Score=230.68 Aligned_cols=245 Identities=22% Similarity=0.294 Sum_probs=133.3
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
++++++++++.++ .+|..+. ++|+.|++++|.+....+..|..+++|++|++++|.++...|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6777777776666 4444332 467777777777766666567777777777777777765556667777777777777
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCC
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 176 (488)
+|.++ .+|..++ ++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------- 161 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------------- 161 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-----------------------
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC-----------------------
Confidence 77766 5665543 56777777766666444445566666666666655442100
Q ss_pred CCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc
Q 041473 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256 (488)
Q Consensus 177 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 256 (488)
..+..+... ++|++|++++|.++. .|..+ .++|++|++++|.+....+
T Consensus 162 ----------------------------~~~~~~~~l-~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 162 ----------------------------IENGAFQGM-KKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp ----------------------------BCTTGGGGC-TTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECT
T ss_pred ----------------------------cChhhccCC-CCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCH
Confidence 000011111 233333333333331 11111 1455555555555554444
Q ss_pred ccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc
Q 041473 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 324 (488)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 45555555555555555554444434445555555555555544 34444444555555555555444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=229.75 Aligned_cols=198 Identities=20% Similarity=0.262 Sum_probs=108.9
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCC--CccccccCCCCccEEEcccccccCCCCccccCCccccEEe
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG--RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 293 (488)
+|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+.. .+..+ .++|++|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~--~~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL--PETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS--CSSCSCCB
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc--cCCCCEEE
Confidence 55555555555554444456666666666666666542 333444444 55555555555543 22222 14555555
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+++|++|++++|.++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-------------------------MIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-------------------------CCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCC-------------------------cCChhHhhCCCCCCEEECCCCcCe
Confidence 5555554444444444444544444444443 333334555566666666666666
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccC------CCCCCEEeccCcccC--CccchhhhccccCceeeccCcc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS------LRGIQNLDLSRNNLS--GRIPKYFENFFFLQNLNLSSNH 443 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 443 (488)
.+|..+..+++|++|++++|.++...+..|.. .++|+.|++++|++. ...|.+|..+++|+.+++++|+
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55656666666666666666666555555543 255677777777665 4566667777777777777664
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=226.96 Aligned_cols=250 Identities=22% Similarity=0.220 Sum_probs=197.1
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
+.++.++..++. +|.. ..+++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 445555555543 2322 2457778888877777666666777778888888887777666667777888888888887
Q ss_pred c-cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 298 R-LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 298 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
. +....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 665556777778888888888888775556666666666 78888888887666667888899999999999998555
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 456 (488)
+..+..+++|++|++++|.+....+..|.++++|+.|++++|.+++..+..+..+++|++|++++|++.+.++..+....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 56688899999999999999888888999999999999999999987778899999999999999999988887777788
Q ss_pred cceeeecCCCCcccc
Q 041473 457 SSAISLDGNDNLCGG 471 (488)
Q Consensus 457 L~~l~l~~n~~~c~~ 471 (488)
++.+....+...|..
T Consensus 250 l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSL 264 (285)
T ss_dssp HHHCCSEECCCBEEE
T ss_pred HHhcccccCccccCC
Confidence 888888888888876
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=231.40 Aligned_cols=236 Identities=25% Similarity=0.310 Sum_probs=160.7
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+.++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46777777777777666667777777777777777777666667777777777777777777555556777777777777
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
++|.+....+..|..+++|++|++++|+..+.++. .+..++.+ ++|++++|.+. .+| .+..+++|++|++++|.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 77777755556677777777777777543324333 44455555 67777777666 333 3556667777777777776
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+..+..|.++++|++|++++|++....+..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++.+.+...+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHH
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHH
Confidence 55566666777777777777777666666677777777777777777766666666677777777777777766654443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-30 Score=260.40 Aligned_cols=411 Identities=13% Similarity=0.065 Sum_probs=207.1
Q ss_pred ccCcccccCCccCcEEeccCCCCC---CCcCcc------------ccCCcccccccccccccccccchhhcC-CC-CccE
Q 041473 6 GKVPGKLGSLSKLRTLAVHFNNLS---GEIPSS------------FGNLSSLEFLSAAVNQFVGQIPETLSE-LK-RMRS 68 (488)
Q Consensus 6 ~~l~~~l~~~~~L~~L~l~~~~l~---~~~~~~------------~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~ 68 (488)
..++..+..+++|++|+++++..- +..|.. +..+++|+.|+++++.+....+..+.. ++ +|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 344455567778888888764321 111111 125667777777777665444444444 23 3777
Q ss_pred EEeeccc-ccc-ccchhhhccCCCcEEecccCCcCCCCCc---chhccCCCCcEEEcCCCccc----ccCCccccCCCCC
Q 041473 69 IGFGANK-LSG-EIPFSIYNLSSLSLLDFPVNQLQGSLPS---DIGFTLPNLEVLNFGNNQFT----GPIPASISNASNL 139 (488)
Q Consensus 69 L~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L 139 (488)
|++++|. ++. .++....++++|++|++++|.+.+.-.. .+...+++|++|+++++.+. ...+..+..+++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 7777665 221 1223334667777777777766533211 12335677777777766654 1223334456677
Q ss_pred ceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccE
Q 041473 140 MRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKR 219 (488)
Q Consensus 140 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 219 (488)
++|+++++.+......+..+++|+++.++....... .......+..+++ |+.
T Consensus 223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~~~~-------------------------L~~ 274 (592)
T 3ogk_B 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG---MPEKYMNLVFPRK-------------------------LCR 274 (592)
T ss_dssp CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT---CTTSSSCCCCCTT-------------------------CCE
T ss_pred cEEeccCccHHHHHHHHhhhhHHHhhcccccccccc---hHHHHHHhhcccc-------------------------ccc
Confidence 777777666554433355566666666654221100 0011222333344 444
Q ss_pred EEccccccccccchhccCCCCCCEEEccCCcCCCCcc-ccccCCCCccEEEcccccccCCCCccccCCccccEEecCC--
Q 041473 220 FTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL-GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG-- 296 (488)
Q Consensus 220 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-- 296 (488)
+.+.++.. ...+..+..+++|++|++++|.+..... ..+..+++|++|++.++-.....+.....+++|++|++++
T Consensus 275 L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 275 LGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp EEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred cCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCc
Confidence 44443321 1233334445555555555554332111 2234455555555552211111112223445555555552
Q ss_pred ---------CccCCC-CCccccCCCCCcEEEccCCcCccccchhhhc-ccCceeEEEcc----CCccccc-----CCccc
Q 041473 297 ---------NRLEGS-IPSSLGKCKNLILLDLSNNNLTGTIPTEVIG-LSSLSIYLDLS----KNQLNGP-----LPSNF 356 (488)
Q Consensus 297 ---------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~~L~l~----~~~~~~~-----~~~~~ 356 (488)
+.+++. .+.....+++|++|+++.+.+++..+..+.. ++.+ ++|+++ .+.+++. ++..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHH
Confidence 222211 1111233556666666555555444444433 3333 556654 3334321 11224
Q ss_pred cCCCCccEEEccCCc--ccCCCccccc-cCCCCCEEecCCcccccc-CcccccCCCCCCEEeccCcccCCc-cchhhhcc
Q 041473 357 GILKNLGVLDVSENK--LSGEIPNSLG-SCVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGR-IPKYFENF 431 (488)
Q Consensus 357 ~~l~~L~~L~l~~n~--l~~~~~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l 431 (488)
..+++|++|++++|. +++..+..+. .+++|++|++++|.+++. .+..+.++++|++|+|++|+++.. ++..+..+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 456777777776543 4433333332 367777777777777642 334456677777777777776544 33344567
Q ss_pred ccCceeeccCccccc
Q 041473 432 FFLQNLNLSSNHFEG 446 (488)
Q Consensus 432 ~~L~~L~l~~n~~~~ 446 (488)
++|++|++++|+++.
T Consensus 513 ~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 513 PSLRYLWVQGYRASM 527 (592)
T ss_dssp SSCCEEEEESCBCCT
T ss_pred CccCeeECcCCcCCH
Confidence 777777777777664
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=230.28 Aligned_cols=236 Identities=23% Similarity=0.279 Sum_probs=162.5
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+++++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46777777777777666677777777777777777777666667777777777777777777555556777777777777
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
++|.+....+..+..+++|+.|++++|+..+.++. .+..++.+ ++|++++|.+.+. | .+..+++|++|++++|.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 77777755555677777777777777543334443 34455555 6777777776632 3 3556667777777777776
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+..|..|.++++|++|++++|.+....+..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++.+.+...+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence 66666677777777777777777666666677777777777777777766666666677777777777777766664443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=221.68 Aligned_cols=257 Identities=25% Similarity=0.266 Sum_probs=202.1
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCc--cccccCCCCccEEEcccccccCCCCccccCCccccEE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI--LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
+++++|+++++.++...+..+..+++|++|++++|.+.... +..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 47888888888887555555788888999999888776332 345556788899999888877 445567788889999
Q ss_pred ecCCCccCCCCC-ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc-cCCccccCCCCccEEEccCC
Q 041473 293 SFEGNRLEGSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLDVSEN 370 (488)
Q Consensus 293 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n 370 (488)
++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 998888875544 567788889999999888886677777777777 888888888875 46778888889999999999
Q ss_pred cccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccc-cCceeeccCcccccccC
Q 041473 371 KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~ 449 (488)
.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+..+..++ +|++|++++|++++.++
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 88866678888889999999999988877777788889999999999999888888888885 89999999999988766
Q ss_pred Cccc---cCCcceeeecCCCCcccccc
Q 041473 450 IKGV---FSNSSAISLDGNDNLCGGIS 473 (488)
Q Consensus 450 ~~~~---~~~L~~l~l~~n~~~c~~~~ 473 (488)
..+. +...+.+.+..+...|..-+
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hHHHHHHHHhhhhhhccccccccCCch
Confidence 4333 44555666677777776543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=219.28 Aligned_cols=250 Identities=24% Similarity=0.269 Sum_probs=213.4
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCC--CccccCCccccEEec
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI--PSSVGNLTLLFTLSF 294 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l 294 (488)
.+.++..++.++. +|..+ .+++++|+++++.+.......|..+++|++|++++|.+.... +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4567777776663 34333 368999999999998777777899999999999999876332 455667999999999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccc-hhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP-TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999988 566678899999999999999984443 466677777 89999999999888888999999999999999998
Q ss_pred C-CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-c
Q 041473 374 G-EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-K 451 (488)
Q Consensus 374 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 451 (488)
+ ..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+. .
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 5788899999999999999999988889999999999999999999988888899999999999999999986653 4
Q ss_pred ccc-CCcceeeecCCCCcccc
Q 041473 452 GVF-SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 452 ~~~-~~L~~l~l~~n~~~c~~ 471 (488)
..+ ++|+.|++++|++.|++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSG
T ss_pred HhhhccCCEEEccCCCeeccc
Confidence 445 59999999999999976
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-30 Score=258.04 Aligned_cols=312 Identities=13% Similarity=0.073 Sum_probs=213.1
Q ss_pred cccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccc---cccchh
Q 041473 158 NLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLF---GNIPSG 234 (488)
Q Consensus 158 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~ 234 (488)
.+++|+.|+++.+.+..... ......+..+++|+.++++.+.+.+ ++..+... ++|+++.++..... ...+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISP--KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCH--HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTSSSC
T ss_pred cCCCccEEEeeccCCCccCH--HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHHHHH
Confidence 44555555555554432111 1333445567778888888776653 44444444 68888888754322 123345
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC-ccccCCccccEEecCCCccCCCCCccccCCCCC
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP-SSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 313 (488)
+..+++|+.+++++.... ..+..+..+++|++|++++|.+.+... ..+..+++|++|+++++...+..+.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 678899999999886433 456667788999999999998543322 335789999999998433222233444668999
Q ss_pred cEEEccC-----------CcCccc-cchhhhcccCceeEEEccCCcccccCCccccC-CCCccEEEcc----CCcccCC-
Q 041473 314 ILLDLSN-----------NNLTGT-IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI-LKNLGVLDVS----ENKLSGE- 375 (488)
Q Consensus 314 ~~L~l~~-----------~~~~~~-~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~- 375 (488)
++|++++ +.+++. ++.....++.+ ++|+++.+.+.+..+..+.. +++|++|+++ .+.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC-SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccC-eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 9999994 345433 22223345666 89999888887665555555 8899999997 4566632
Q ss_pred ----CccccccCCCCCEEecCCcc--ccccCcccc-cCCCCCCEEeccCcccCCc-cchhhhccccCceeeccCcccccc
Q 041473 376 ----IPNSLGSCVRLEQLVMNGNF--FQGNIPSSF-SSLRGIQNLDLSRNNLSGR-IPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 376 ----~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
++..+.++++|++|++++|. +++.....+ ..+++|++|++++|.++.. .+..+.++++|++|++++|+++..
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 33346779999999998654 554444333 4589999999999998864 455668899999999999997643
Q ss_pred -cCC-ccccCCcceeeecCCCCcccccccc
Q 041473 448 -VPI-KGVFSNSSAISLDGNDNLCGGISEL 475 (488)
Q Consensus 448 -~~~-~~~~~~L~~l~l~~n~~~c~~~~~l 475 (488)
++. ...+++|+.|++++|+..-.+++.|
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 332 3468999999999999776665544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=224.12 Aligned_cols=273 Identities=19% Similarity=0.171 Sum_probs=206.8
Q ss_pred cEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccc
Q 041473 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKG 272 (488)
Q Consensus 193 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 272 (488)
...+.+.+.+. .+|..+ ++++++|+++++.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 34 ~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 34445544443 233322 24788899998888876666788889999999999988876677788889999999999
Q ss_pred ccccCCCCccccCCccccEEecCCCccCCCCC-ccccCCCCCcEEEccCCc-CccccchhhhcccCceeEEEccCCcccc
Q 041473 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKNLILLDLSNNN-LTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
|.+....+..+..+++|++|++++|.+.+... ..+..+++|++|++++|. +.+..+..+..++.+ ++|++++|.+.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCCCCcCc
Confidence 98885555557888999999999998884443 467888999999999884 554445666677666 889999998887
Q ss_pred cCCccccCCCCccEEEccCCcccCCCcc-ccccCCCCCEEecCCccccccCccccc---CCCCCCEEeccCcccCC----
Q 041473 351 PLPSNFGILKNLGVLDVSENKLSGEIPN-SLGSCVRLEQLVMNGNFFQGNIPSSFS---SLRGIQNLDLSRNNLSG---- 422 (488)
Q Consensus 351 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~---- 422 (488)
..+..+..+++|++|++++|.+. .++. .+..+++|++|++++|.+....+..+. ....++.++++++.+..
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 77888888899999999999887 4444 344688999999999988865444333 35678888888888775
Q ss_pred ccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.+|..+..+++|++|++++|+++...+. ...+++|+.|++++||+.|++
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3677788889999999999988843333 367889999999999998865
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=212.10 Aligned_cols=224 Identities=18% Similarity=0.239 Sum_probs=128.7
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
..++.|+++++.+. .+|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 35666666666655 34444555666666666666655 34445555666666666666655 44555566666666666
Q ss_pred CCCccCCCCCccccC---------CCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEE
Q 041473 295 EGNRLEGSIPSSLGK---------CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVL 365 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L 365 (488)
++|...+..|..+.. +++|++|++++|.++ .+|..+..++.+ ++|++++|.+. .+|..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCC-cCchhhccCCCCCEE
Confidence 665555555544432 556666666666555 555555555554 55666666555 233345555566666
Q ss_pred EccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccc
Q 041473 366 DVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
++++|.+.+.+|..+..+++|++|++++|.+....|..+.++++|++|+|++|++.+.+|..+..+++|+.+++..+.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666555555555555556666666666555555555555566666666666655555666666666666665554443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=207.87 Aligned_cols=234 Identities=21% Similarity=0.204 Sum_probs=201.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccccc-ccCCCCccccCCccccEEe
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK-FLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 293 (488)
+++++|+++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 589999999999987777788999999999999999887777888999999999999997 7766677889999999999
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999998888889999999999999999985555557777777 89999999999777778999999999999999999
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+..|..+..+++|++|++++|.++...+..+..+++|+.|++++|++....+. ......++.+..+.+.+.+..|.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCch
Confidence 77789999999999999999999987778899999999999999999854331 12234566777888888887774
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=222.60 Aligned_cols=249 Identities=25% Similarity=0.268 Sum_probs=190.6
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
...++..+..++ .+|..+ .++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445555555555 334333 26788888888888777777788888888888888888766667788888888888888
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCC-cccccCCccccCCCCccEEEccCCcccCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN-QLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
|.++...+..+..+++|++|++++|.+....+..+..++.+ ++|++++| .+....+..|..+++|++|++++|.++ .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL-RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc-CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 88886666678888888888888888875555566666666 78888884 444444557788888888888888887 5
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-cccc
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVF 454 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~ 454 (488)
+| .+..+++|++|++++|.++...+..|.++++|+.|++++|+++...+..|..+++|++|++++|+++...+. ...+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 467788888888888888877788888888888888888888877788888888888888888888754433 4567
Q ss_pred CCcceeeecCCCCcccc
Q 041473 455 SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 455 ~~L~~l~l~~n~~~c~~ 471 (488)
++|+.|++++|||.|++
T Consensus 279 ~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTCCEEECCSSCEECSS
T ss_pred cCCCEEEcCCCCccCCC
Confidence 88888888888888876
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=223.93 Aligned_cols=249 Identities=24% Similarity=0.241 Sum_probs=201.2
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
...++..+..++. +|..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4456665555553 34333 36789999999988877778888899999999999988877777888899999999999
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCC-cccccCCccccCCCCccEEEccCCcccCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN-QLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
|.+....+..+..+++|++|++++|.+....+..+..++.+ ++|++++| .+....+..|..+++|++|++++|.++ .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 99887777778889999999999998885555566677777 88999884 455445567888899999999999888 4
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-cccc
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVF 454 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~ 454 (488)
+| .+..+++|++|++++|.+....+..|.++++|+.|++++|.++...+..|.++++|++|++++|++++..+. ...+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 477888999999999999888888899999999999999999888888889999999999999988854433 4568
Q ss_pred CCcceeeecCCCCcccc
Q 041473 455 SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 455 ~~L~~l~l~~n~~~c~~ 471 (488)
++|+.|++++|||.|++
T Consensus 290 ~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCEECST
T ss_pred cCCCEEEccCCCcCCCC
Confidence 88999999999999887
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=211.28 Aligned_cols=223 Identities=20% Similarity=0.259 Sum_probs=201.2
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILL 316 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (488)
..+.+++|+++++.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 45556777999999999999998 77888999999999999999998 778899999999999
Q ss_pred EccCCcCccccchhhhc---------ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCC
Q 041473 317 DLSNNNLTGTIPTEVIG---------LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387 (488)
Q Consensus 317 ~l~~~~~~~~~~~~~~~---------~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (488)
++++|.+.+.+|..+.. ++.+ ++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L-~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNL-QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTC-CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCC-CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 99999888788877654 6676 89999999998 77888999999999999999999 6777899999999
Q ss_pred EEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCC
Q 041473 388 QLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGN 465 (488)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 465 (488)
+|++++|.+....+..+.++++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. .+.+++|+.+++..+
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999999888999999999999999999999999999999999999999999999988874 677889999888755
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=214.95 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=169.2
Q ss_pred ccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcc
Q 041473 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271 (488)
Q Consensus 192 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 271 (488)
++.++++++.+.+..+..+... ++|++|++++|.++...+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 3444444443332222233333 467777777776665555667777777777777777765555556667777777777
Q ss_pred cccccCCCC-ccccCCccccEEecCCCc-cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCccc
Q 041473 272 GNKFLGEIP-SSVGNLTLLFTLSFEGNR-LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349 (488)
Q Consensus 272 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~ 349 (488)
+|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+..++.+ ++|++++|.+.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQHI 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSCST
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCccc
Confidence 777664333 356677777777777763 544445566777777777777777775566666666655 67777777765
Q ss_pred ccCCccccCCCCccEEEccCCcccCCCcccc---ccCCCCCEEecCCccccc----cCcccccCCCCCCEEeccCcccCC
Q 041473 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSL---GSCVRLEQLVMNGNFFQG----NIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 350 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
......+..+++|++|++++|.+++..+..+ .....++.++++++.+.+ ..+..+.++++|+.|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 3333334456778888888887774433322 235667777887777664 345677888899999999999885
Q ss_pred ccchhhhccccCceeeccCcccccccCCc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
..+..|..+++|++|++++|++.+.+|..
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 44444688899999999999998887743
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-28 Score=247.68 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=121.2
Q ss_pred cccCCccCcEEeccCCCCCC---CcC------------ccccCCcccccccccccccccccchhhc-CCCCccEEEeecc
Q 041473 11 KLGSLSKLRTLAVHFNNLSG---EIP------------SSFGNLSSLEFLSAAVNQFVGQIPETLS-ELKRMRSIGFGAN 74 (488)
Q Consensus 11 ~l~~~~~L~~L~l~~~~l~~---~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~ 74 (488)
.+..+++|++|+++++.... ..+ ..+..+++|+.|+++++.+....+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 34556777777777654110 111 1123566677777777766544444443 5667777777766
Q ss_pred -ccccc-cchhhhccCCCcEEecccCCcCCCCCcch---hccCCCCcEEEcCCCc--ccc-cCCccccCCCCCceeeccc
Q 041473 75 -KLSGE-IPFSIYNLSSLSLLDFPVNQLQGSLPSDI---GFTLPNLEVLNFGNNQ--FTG-PIPASISNASNLMRLTIQK 146 (488)
Q Consensus 75 -~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~ 146 (488)
.++.. ++..+.++++|++|++++|.+++..+..+ ...+++|++|++++|. +.. .....+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 34322 33334466777777777766553222221 1235567777776664 110 0111123356677777766
Q ss_pred CC-CccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEE-ecCCCcccccCchhhhhhhccccEEEccc
Q 041473 147 NG-FSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM-EISINNFGGMLPESVGNLSTRLKRFTVGN 224 (488)
Q Consensus 147 ~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 224 (488)
|. +......+..+++|+.+.+..+...............+..++.|+.+ .+.... ...++..... .++|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~-~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSV-CSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHH-HTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHh-hCCCCEEEccC
Confidence 52 22211124455666666654433211111111222344555566655 222211 1112222222 24666666666
Q ss_pred ccccccc-chhccCCCCCCEEEccCCcCCCC-ccccccCCCCccEEEcc
Q 041473 225 NQLFGNI-PSGLGNLVNLELLDLGDNQFTGR-ILGSIGDLQKLQRLRLK 271 (488)
Q Consensus 225 ~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~ 271 (488)
|.++... ...+..+++|++|++.++ +... .......+++|++|++.
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 6544321 122345566666666655 2211 11112235556666653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-26 Score=211.82 Aligned_cols=257 Identities=19% Similarity=0.168 Sum_probs=156.7
Q ss_pred CccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEc
Q 041473 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270 (488)
Q Consensus 191 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 270 (488)
.++..+++.+.+.... ..+....++|++|++++|.++...+..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHH-HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhH-HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3455555555443222 2223333577777777777776666667777777777777777654332 666777777777
Q ss_pred ccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc
Q 041473 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
++|.+.+. ...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCc
Confidence 77766522 2336777777777776644332 24567777777777765445455555555 677777777665
Q ss_pred cCCccc-cCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhh
Q 041473 351 PLPSNF-GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFE 429 (488)
Q Consensus 351 ~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 429 (488)
..+..+ ..+++|++|++++|.++.. +. ...+++|++|++++|.++... ..+..+++|+.|++++|+++ .+|..+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhh
Confidence 555444 3566777777777776632 32 223667777777777766433 33666677777777777766 4555666
Q ss_pred ccccCceeeccCcccccc-cC-CccccCCcceeeec
Q 041473 430 NFFFLQNLNLSSNHFEGE-VP-IKGVFSNSSAISLD 463 (488)
Q Consensus 430 ~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~l~l~ 463 (488)
.+++|+.|++++|++.+. .+ ....+++|+.+++.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 667777777777776632 22 23445566666666
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-28 Score=245.29 Aligned_cols=415 Identities=13% Similarity=0.066 Sum_probs=244.3
Q ss_pred cEEeccCCCCCCCcCccccCCccccccccccccccc---cc------------chhhcCCCCccEEEeeccccccccchh
Q 041473 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG---QI------------PETLSELKRMRSIGFGANKLSGEIPFS 83 (488)
Q Consensus 19 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~---~~------------~~~~~~l~~L~~L~l~~~~l~~~~~~~ 83 (488)
+.+++.++... .....+..+++|+.|+++++.... .. +.....+++|++|+++++.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555443322 233456778889999999875321 11 122357889999999999888666666
Q ss_pred hh-ccCCCcEEecccC-CcCCCCCcchhccCCCCcEEEcCCCcccccCCccc----cCCCCCceeecccCC--CccC-CC
Q 041473 84 IY-NLSSLSLLDFPVN-QLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI----SNASNLMRLTIQKNG--FSGK-VP 154 (488)
Q Consensus 84 ~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~~-~~ 154 (488)
+. .+++|++|++++| .+.+.....+...+++|++|++++|.+....+.++ ..+++|++|+++++. +... ..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 65 6889999999988 44422122344468999999999988765444333 356789999998876 1100 00
Q ss_pred C-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCccc--c----cCchhhhhhhccccEE-Eccccc
Q 041473 155 S-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFG--G----MLPESVGNLSTRLKRF-TVGNNQ 226 (488)
Q Consensus 155 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~--~----~~~~~~~~~~~~L~~L-~l~~~~ 226 (488)
. +..+++|+.|++.++.... .....+..++.|+.+.+..+... . .++..+... ++|+.+ .+....
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~-~~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLE------KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC-KELRCLSGFWDAV 277 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHH------HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC-TTCCEEECCBTCC
T ss_pred HHHHhCCCCcEEecCCCCcHH------HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC-CCcccccCCcccc
Confidence 1 2445888888887762111 24455566778888876554210 0 011222222 466666 232222
Q ss_pred cccccchhccCCCCCCEEEccCCcCCCCc-cccccCCCCccEEEcccccccCC-CCccccCCccccEEecCCC-------
Q 041473 227 LFGNIPSGLGNLVNLELLDLGDNQFTGRI-LGSIGDLQKLQRLRLKGNKFLGE-IPSSVGNLTLLFTLSFEGN------- 297 (488)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~------- 297 (488)
. ...+..+..+++|++|++++|.+.... ...+..+++|++|++.+| +.+. .+.....+++|++|++.++
T Consensus 278 ~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 278 P-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp G-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred h-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 1 123344446778888888887754322 223456788888888877 3321 1222235778888877432
Q ss_pred --ccCCCCCccc-cCCCCCcEEEccCCcCccccchhhh-cccCceeEEEcc--C----Cccccc-----CCccccCCCCc
Q 041473 298 --RLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLS--K----NQLNGP-----LPSNFGILKNL 362 (488)
Q Consensus 298 --~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~--~----~~~~~~-----~~~~~~~l~~L 362 (488)
.+++.....+ ..+++|+.|.+..+.+++.....+. .++.+ ++|+++ + +.+++. .+..+..+++|
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 2221111122 2367788887777777654444443 34455 777777 2 333311 11124556778
Q ss_pred cEEEccCCcccCCCcccccc-CCCCCEEecCCccccccCcccc-cCCCCCCEEeccCcccCCccch-hhhccccCceeec
Q 041473 363 GVLDVSENKLSGEIPNSLGS-CVRLEQLVMNGNFFQGNIPSSF-SSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNL 439 (488)
Q Consensus 363 ~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l 439 (488)
++|++++ .++...+..+.. +++|+.|++++|.+++.....+ .++++|++|++++|+++..... ....+++|+.|++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 8888866 454343344433 6778888888887765444444 5677888888888877544333 3455778888888
Q ss_pred cCcccc
Q 041473 440 SSNHFE 445 (488)
Q Consensus 440 ~~n~~~ 445 (488)
++|+++
T Consensus 514 ~~~~~~ 519 (594)
T 2p1m_B 514 SSCSVS 519 (594)
T ss_dssp ESSCCB
T ss_pred eCCCCC
Confidence 888774
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=217.32 Aligned_cols=246 Identities=20% Similarity=0.177 Sum_probs=175.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
++|++|++++|.+....|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 478888888888877777778888888888888887764433 777788888888888776322 2378888888
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc-CCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG-ILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~ 373 (488)
++|.+.+..+. .+++|+.|++++|.+++..|..+..++.+ ++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88887754443 34678888888888876666666666666 7888888888766666665 6778888888888877
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc-cC-Cc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE-VP-IK 451 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~-~~ 451 (488)
+. +. +..+++|+.|++++|.++...+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+. .| ..
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 33 32 3347788888888888875443 4777788888888888877 4666777778888888888887732 22 24
Q ss_pred cccCCcceeeec-------CCCCcccccccc
Q 041473 452 GVFSNSSAISLD-------GNDNLCGGISEL 475 (488)
Q Consensus 452 ~~~~~L~~l~l~-------~n~~~c~~~~~l 475 (488)
+.++.++.++++ +++..|.+....
T Consensus 259 ~~l~~L~~l~~~~~~~~~~~~~~~c~~~~~~ 289 (487)
T 3oja_A 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289 (487)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred HhCCCCcEEeccccccccCCCcccccCCccc
Confidence 456667777775 777777765443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=206.71 Aligned_cols=239 Identities=18% Similarity=0.195 Sum_probs=151.3
Q ss_pred cCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccE
Q 041473 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQR 267 (488)
Q Consensus 188 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 267 (488)
.++.|+.++++++.+....+..+... ++|++|++++|.++...+ +..+++|++|++++|.+.+. ...++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCE
Confidence 34567777777776665555555554 467777777777664433 66677777777777765422 22366777
Q ss_pred EEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhh-cccCceeEEEccCC
Q 041473 268 LRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKN 346 (488)
Q Consensus 268 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~~~ 346 (488)
|++++|.+....+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .++.+ ++|++++|
T Consensus 104 L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred EECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCC
Confidence 7777776654322 2356677777777777655555666667777777777776654444443 34444 67777777
Q ss_pred cccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC-Cccc
Q 041473 347 QLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS-GRIP 425 (488)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 425 (488)
.+.+... ...+++|++|++++|.++ .+|..+..+++|++|++++|.++ ..+..+..+++|+.|++++|++. ..++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccccc--ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 7664322 223667777777777776 44445666777777777777776 34555666777777777777776 5566
Q ss_pred hhhhccccCceeeccCc
Q 041473 426 KYFENFFFLQNLNLSSN 442 (488)
Q Consensus 426 ~~l~~l~~L~~L~l~~n 442 (488)
.++..+++|+.+++.+|
T Consensus 256 ~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHhccccceEEECCCc
Confidence 66677777777777655
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=191.73 Aligned_cols=208 Identities=23% Similarity=0.239 Sum_probs=173.3
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
...+.++++++.+... +..+. +++++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3578899999888753 33333 67999999999988776678889999999999999998666677788999999999
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
++|.+.+..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 9999885445555666766 899999999987777788889999999999999885555668889999999999999987
Q ss_pred cCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
..+..|.++++|++|++++|+++...+..|..+++|+.|++++|++.+.++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 7777888899999999999999877777788889999999999999887763
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=195.20 Aligned_cols=208 Identities=23% Similarity=0.199 Sum_probs=170.7
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
++.++++++++++++.+..... .+. ++++.|++++|.+....+..+..+++|++|++++|.+.+..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5677889999999988875433 332 689999999999887777788899999999999998874433 26788999
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.+. .+|..+..++.+ ++|++++|++.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999888 777777777777 88999999988777788888899999999999888666666788889999999999
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+++...+..|.++++|+.|++++|+++ .+|..+...++|+.+++++|++.+.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 988777777888899999999999888 6677777778899999999998887653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=207.25 Aligned_cols=245 Identities=20% Similarity=0.196 Sum_probs=149.2
Q ss_pred CccEEecCCCcccccCchhhhhhhccccEEEcccccccc-ccchhcc-------CCCCCCEEEccCCcCCCCccccc--c
Q 041473 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFG-NIPSGLG-------NLVNLELLDLGDNQFTGRILGSI--G 260 (488)
Q Consensus 191 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~l--~ 260 (488)
.|+.+++.++.+ .++..+.. .++.|+++++.+.. ..+..+. .+++|++|++++|.+.+..+..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 344444444444 33333332 36666666666632 2333333 57788888888887775555544 6
Q ss_pred CCCCccEEEcccccccCCCCccccCC-----ccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCcccc--chhhhc
Q 041473 261 DLQKLQRLRLKGNKFLGEIPSSVGNL-----TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTI--PTEVIG 333 (488)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~ 333 (488)
.+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+.. +..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-- 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--
Confidence 777888888888877755 5555555 77788888877777666677777777777777777755331 1111
Q ss_pred ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC--CCc-cccccCCCCCEEecCCccccccCc-ccccCCCC
Q 041473 334 LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG--EIP-NSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRG 409 (488)
Q Consensus 334 ~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 409 (488)
.+..+++|++|++++|.++. .++ ..+..+++|++|++++|.+....+ ..+..+++
T Consensus 196 ---------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 196 ---------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp ---------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred ---------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 12445566666666666651 111 223455666777777766665443 34455667
Q ss_pred CCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCc
Q 041473 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 410 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
|++|++++|.++ .+|..+. ++|++|++++|++++. |....+++|+.|++++|++.
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 777777777766 4454444 6677777777777644 55666667777777777654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-25 Score=215.64 Aligned_cols=218 Identities=22% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEcc
Q 041473 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLS 319 (488)
Q Consensus 240 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (488)
+|++|++++|.+....+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555444444444445555555555554442222 444455555555555444211 12445555555
Q ss_pred CCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc-cCCCCCEEecCCccccc
Q 041473 320 NNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG-SCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~ 398 (488)
+|.+.+..+.. ++.+ ++|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.++.
T Consensus 108 ~N~l~~~~~~~---l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSC-EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCC-CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 55444222221 2222 4455555555444444444445555555555555443444333 34555555555555443
Q ss_pred cCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..+....+++|+.|++++|++.|++
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 21 11234455555555555543222 244445555555555555433233334445555555555555444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-26 Score=209.74 Aligned_cols=243 Identities=23% Similarity=0.217 Sum_probs=190.6
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC-CCCcccc-------CCccccEEecCCCccCCCCCcc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG-EIPSSVG-------NLTLLFTLSFEGNRLEGSIPSS 306 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~ 306 (488)
++..++|++++++++.+ ..+..+.. .++.|++++|.+.. ..+..+. ++++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44556788888888877 34443332 27888888887742 2333333 6889999999999998878876
Q ss_pred c--cCCCCCcEEEccCCcCccccchhhhcc-----cCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC--Cc
Q 041473 307 L--GKCKNLILLDLSNNNLTGTIPTEVIGL-----SSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE--IP 377 (488)
Q Consensus 307 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 377 (488)
+ ..+++|++|++++|.+++. |..+..+ +.+ ++|++++|.+.+..+..+..+++|++|++++|.+.+. .+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGL-KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTC-CEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCC-cEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 5 7889999999999999855 7777666 555 8999999999988888999999999999999997644 23
Q ss_pred ccc--ccCCCCCEEecCCccccc---cCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccccCCc
Q 041473 378 NSL--GSCVRLEQLVMNGNFFQG---NIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 378 ~~~--~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
..+ ..+++|++|++++|.++. .....+.++++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 789999999999999983 233556788999999999999997764 56677899999999999998 56643
Q ss_pred cccCCcceeeecCCCCc-------cccccccccCcchhhhc
Q 041473 452 GVFSNSSAISLDGNDNL-------CGGISELHLSTCSIKES 485 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~-------c~~~~~l~~~~c~~~~~ 485 (488)
-. ++|+.|++++|... ...+++|+++++++...
T Consensus 272 ~~-~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC-SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred cc-CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 33 89999999999776 34567888999988754
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=193.31 Aligned_cols=211 Identities=23% Similarity=0.216 Sum_probs=144.4
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888777666666777788888888888777555566777788888888888777666667777778888888
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCccccc-CCccccCCCCccEEEccCCcccCCCccccccCCCCC----EEecCC
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE----QLVMNG 393 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~l~~ 393 (488)
++|.+.+..+..+..++.+ ++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 8777764444455555555 6777777776643 366667777777777777777655455555555555 677777
Q ss_pred ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 394 NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
|.+....+..+.. .+|+.|++++|.+++..+..|..+++|+.|++++|++.+.++..
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 7776544444433 36777777777777555556666777777777777777666543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=193.98 Aligned_cols=207 Identities=22% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEE
Q 041473 263 QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~ 342 (488)
+++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL-QKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC-CEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc-cEEE
Confidence 345556665555554444445555556666665555554444455555556666666555554444444444444 5555
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCC-CccccccCCCCCEEecCCccccccCcccccCCCCCC----EEeccC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE-IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ----NLDLSR 417 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~ 417 (488)
+++|.+.+..+..+..+++|++|++++|.++.. +|..+..+++|++|++++|.++...+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 555555544444455555566666665555532 355555555666666666555544444444444444 555555
Q ss_pred cccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 418 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
|.+....+..+. ..+|++|++++|.+++..+. ...+++|+.|++++||+.|++
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 555533333332 23555566665555533222 244555555666666655544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=186.54 Aligned_cols=202 Identities=25% Similarity=0.281 Sum_probs=127.0
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
..+.++++++.++. +|..+ .+++++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45566666666653 33322 2456677777766665555566666677777777666664444455666677777777
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+.+..+..+..+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 766665555556666667777777776664444445555555 6677777766655555566666777777777766644
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
.+..|..+++|++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 4455666667777777777666555556666667777777777665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=202.46 Aligned_cols=268 Identities=28% Similarity=0.326 Sum_probs=151.7
Q ss_pred CccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeec
Q 041473 65 RMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTI 144 (488)
Q Consensus 65 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 144 (488)
++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++. .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 4666666666666 4454443 56666666666665 5554 2456666666666555 2333 3455555555
Q ss_pred ccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccc
Q 041473 145 QKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGN 224 (488)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 224 (488)
++|.+..... .+ ++|++|++++
T Consensus 109 s~N~l~~l~~---~l-------------------------------------------------------~~L~~L~L~~ 130 (622)
T 3g06_A 109 FSNPLTHLPA---LP-------------------------------------------------------SGLCKLWIFG 130 (622)
T ss_dssp CSCCCCCCCC---CC-------------------------------------------------------TTCCEEECCS
T ss_pred cCCcCCCCCC---CC-------------------------------------------------------CCcCEEECCC
Confidence 5554432211 11 2444444444
Q ss_pred cccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCC
Q 041473 225 NQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP 304 (488)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 304 (488)
|.++. +|. .+++|++|++++|.+.... . .+++|+.|++++|.+.. ++ ..+++|+.|++++|.+.+ +|
T Consensus 131 N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 131 NQLTS-LPV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LP 197 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCCc-CCC---CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CC
Confidence 44432 222 1255666666666554321 1 23556666666666553 22 345666666666666653 23
Q ss_pred ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCC
Q 041473 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 384 (488)
Q Consensus 305 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 384 (488)
.. .++|+.|++++|.++ .+|..+ +.+ ++|++++|.+.+ +| ..+++|++|++++|.++ .+|. .++
T Consensus 198 ~~---~~~L~~L~L~~N~l~-~l~~~~---~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 198 TL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CC---CTTCCEEECCSSCCS-SCCCCC---TTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred Cc---cchhhEEECcCCccc-ccCCCC---CCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 22 356677777777666 444321 223 666666666663 33 33467777777777776 4554 456
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccc
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF 432 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 432 (488)
+|+.|++++|.++ .+|..+.++++|+.|++++|++++..|..+..++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 7777777777777 4566677777777777777777766666665554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=199.77 Aligned_cols=266 Identities=23% Similarity=0.273 Sum_probs=182.9
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEec
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 95 (488)
..+++|+++++.++ .+|..+. ++|++|++++|.+.. +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35889999999998 6666554 789999999999874 343 5789999999999988 4555 6789999999
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCC
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNG 175 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 175 (488)
++|.++ .+|. .+++|+.|++++|++. .+|.. +++|++|++++|.+..... ..++|+.|++++|.+...
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence 999988 6776 3678999999999887 45543 4889999999998876433 346788888888877653
Q ss_pred CCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCc
Q 041473 176 EKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI 255 (488)
Q Consensus 176 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 255 (488)
+ ..++.|+.++++.|.+.+ ++. ..++|+.|++.+|.++. +|. .+++|++|++++|.+....
T Consensus 177 ~----------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 177 P----------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp C----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred c----------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC
Confidence 2 234667777777776553 221 12466777777766653 222 2356677777776665422
Q ss_pred cccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhh
Q 041473 256 LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI 332 (488)
Q Consensus 256 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 332 (488)
..+++|+.|++++|.+. .+|. .+++|++|++++|.+. .+|..+..+++|+.|++++|++.+..|..+.
T Consensus 238 ----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 ----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp ----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 33466677777776665 2332 4566667777776666 4566666666677777777766655555443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=186.57 Aligned_cols=200 Identities=24% Similarity=0.240 Sum_probs=148.9
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
++++++++.++.++. +|..+ .+++++|++++|.+....+..+..+++|++|++++|.+....+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 467888888877764 33333 2678888888888876666777888888888888887764332 267788888888
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+. .+|..+..+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888877 566677778888888888888875555666667666 788888888886667777778888888888888884
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
..+..|..+++|+.|++++|+++ ..|..+..+++|+.|++++|++..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 44455677888888888888887 455566666788888888887763
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=181.44 Aligned_cols=220 Identities=24% Similarity=0.233 Sum_probs=153.3
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
+..+.+.++.+... .....+++|++|++.++.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33444444444322 224456777777777776653 23466677777777777776642 2566777788888887
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
|.+.+..+..+..+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77776666667777778888888877774444445556665 67777777777666666777788888888888887555
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.. .+++|+.+++++|.+++.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 5667778888888888888877666777888888888888887763 345778888888888877663
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=179.76 Aligned_cols=212 Identities=23% Similarity=0.229 Sum_probs=164.8
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
+..+++.++.+.. ......+++|+.|++.++.+... + .+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTS--EECHHHHTTCCEEECTTSCCCCC-T-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccc--ccccccccceeeeeeCCCCcccc-c-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 3445555555542 23355678899999999887633 2 477889999999999988743 4678889999999999
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+++..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++...
T Consensus 95 n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 98885555556667776 88999999888777777888888999999999888666666788889999999999888777
Q ss_pred cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
+..+.++++|+.|++++|++++..+..+..+++|+.|++++|++.+.+| +++.+++.+|
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n 232 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN 232 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHH
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHH
Confidence 7778888899999999998887777778888889999999988887666 4555555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=171.92 Aligned_cols=181 Identities=23% Similarity=0.266 Sum_probs=156.6
Q ss_pred CCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEE
Q 041473 263 QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~ 342 (488)
.+.+.++++++.+. .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEE
Confidence 45788999998877 4454443 689999999999998888889999999999999999987666667777777 8999
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
+++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999997777888899999999999999996666667889999999999999997777789999999999999999998
Q ss_pred ccchhhhccccCceeeccCcccccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
..+..|..+++|+.|++++|++.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888899999999999999999886
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-23 Score=195.17 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=178.3
Q ss_pred EecCCCcccccCchhhhhhhccccEEEccccccccccc----hhccCCC-CCCEEEccCCcCCCCccccccCC-----CC
Q 041473 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIP----SGLGNLV-NLELLDLGDNQFTGRILGSIGDL-----QK 264 (488)
Q Consensus 195 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l-----~~ 264 (488)
..++.+.+.+.++..+.. .++|++|++++|.++...+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456667666555554433 3569999999998886665 6677787 89999999998876655555543 88
Q ss_pred ccEEEcccccccCCCCcc----ccCC-ccccEEecCCCccCCCCCccc----cC-CCCCcEEEccCCcCccccc----hh
Q 041473 265 LQRLRLKGNKFLGEIPSS----VGNL-TLLFTLSFEGNRLEGSIPSSL----GK-CKNLILLDLSNNNLTGTIP----TE 330 (488)
Q Consensus 265 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~ 330 (488)
|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+ .. +++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999887655543 3344 789999999998876555433 33 3689999999998875433 33
Q ss_pred hhcccCceeEEEccCCcccccCCccc----cCC-CCccEEEccCCcccCC----Ccccccc-CCCCCEEecCCccccccC
Q 041473 331 VIGLSSLSIYLDLSKNQLNGPLPSNF----GIL-KNLGVLDVSENKLSGE----IPNSLGS-CVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 331 ~~~~~~l~~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~ 400 (488)
+...+..+++|++++|.+.+..+..+ ..+ ++|++|++++|.++.. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444233889999998876555433 334 5899999999988853 3444544 458999999999888654
Q ss_pred c----ccccCCCCCCEEeccCcccCCc-------cchhhhccccCceeeccCcccccc
Q 041473 401 P----SSFSSLRGIQNLDLSRNNLSGR-------IPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 401 ~----~~~~~l~~L~~L~l~~n~~~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
. ..+..+++|+.|++++|.+... ++..+..+++|++|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 3456678899999999985533 234566777888899999988755
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=183.34 Aligned_cols=228 Identities=21% Similarity=0.191 Sum_probs=142.3
Q ss_pred cccEEEccccccccccch---hccCCCCCCEEEccCCcCCCCccccc--cCCCCccEEEcccccccCCCC----ccccCC
Q 041473 216 RLKRFTVGNNQLFGNIPS---GLGNLVNLELLDLGDNQFTGRILGSI--GDLQKLQRLRLKGNKFLGEIP----SSVGNL 286 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~~ 286 (488)
.++.+.+.++.+...... ....+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466666666655421111 11223557777777777665555555 666777777777776664333 223356
Q ss_pred ccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEE
Q 041473 287 TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366 (488)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 366 (488)
++|++|++++|.+.+..+..+..+++|++|++++|++.+.... ..+..+..+++|++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEE
Confidence 6666677766666655556666666666666666654321000 0112234567777788
Q ss_pred ccCCcccCCCcc----ccccCCCCCEEecCCccccccCcccccCC---CCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 367 VSENKLSGEIPN----SLGSCVRLEQLVMNGNFFQGNIPSSFSSL---RGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 367 l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
+++|.++ .++. .+..+++|++|++++|.+....|..+..+ ++|++|++++|+++ .+|..+. ++|++|++
T Consensus 204 Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 8887776 3333 24567788888888888876656555555 68888888888887 5555553 68888888
Q ss_pred cCcccccccCCccccCCcceeeecCCCCcc
Q 041473 440 SSNHFEGEVPIKGVFSNSSAISLDGNDNLC 469 (488)
Q Consensus 440 ~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c 469 (488)
++|++++ +|....+++|+.|++++|++..
T Consensus 280 s~N~l~~-~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNR-APQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCS-CCCTTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCC-CchhhhCCCccEEECcCCCCCC
Confidence 8888874 3545667788888888887654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=170.04 Aligned_cols=181 Identities=21% Similarity=0.199 Sum_probs=158.0
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
...++++++++.+.... ..+. ++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778999999887443 3343 68999999999999887778999999999999999999888888999999999999
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
++|.+++..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQL-DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCC-CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999985555666777777 899999999997777778999999999999999996666679999999999999999998
Q ss_pred cCcccccCCCCCCEEeccCcccCCc
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
..+..|..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7788899999999999999999865
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=173.57 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=95.5
Q ss_pred CCCEEEccCCcCCCCccccccCCCCccEEEccccc-ccCCCCccccCCccccEEecCC-CccCCCCCccccCCCCCcEEE
Q 041473 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK-FLGEIPSSVGNLTLLFTLSFEG-NRLEGSIPSSLGKCKNLILLD 317 (488)
Q Consensus 240 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 317 (488)
++++|++++|.+....+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+....+.+|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44555555555444444444445555555555553 4333333444555555555554 444433334444555555555
Q ss_pred ccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCcc---EEEccCC-cccCCCccccccCCCCC-EEecC
Q 041473 318 LSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLG---VLDVSEN-KLSGEIPNSLGSCVRLE-QLVMN 392 (488)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~ 392 (488)
+++|.++ .+|. +..+++|+ +|++++| .++...+..|.++++|+ +|+++
T Consensus 112 l~~n~l~-~lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLK-MFPD--------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCC-SCCC--------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCc-cccc--------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 5555544 2332 23333333 5555555 44433333455555555 55555
Q ss_pred CccccccCcccccCCCCCCEEeccCcc-cCCccchhhhcc-ccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFENF-FFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
+|.++...+..|.. ++|+.|++++|+ ++...+..|.++ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 55555333334443 555555555553 554444555555 556666666555552 3322 4555555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-22 Score=174.32 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=135.9
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCc-CccccchhhhcccCceeEEEccC-CcccccCCccccCCCCccEE
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNN-LTGTIPTEVIGLSSLSIYLDLSK-NQLNGPLPSNFGILKNLGVL 365 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~L~l~~-~~~~~~~~~~~~~l~~L~~L 365 (488)
++++|++++|.+++..+.++..+++|++|++++|. ++...+..+..++.+ ++|++++ |.+....+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L-~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV-THIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC-CEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC-cEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555555554444455555566666666664 442233344444444 5666665 66665556678888999999
Q ss_pred EccCCcccCCCccccccCCCCC---EEecCCc-cccccCcccccCCCCCC-EEeccCcccCCccchhhhccccCceeecc
Q 041473 366 DVSENKLSGEIPNSLGSCVRLE---QLVMNGN-FFQGNIPSSFSSLRGIQ-NLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
++++|.++ .+|. +..+++|+ +|++++| .+....+..|.++++|+ .|++++|.++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 99999998 4675 88888998 9999999 99877778899999999 9999999999555555655 899999999
Q ss_pred Ccc-cccccC-Ccccc-CCcceeeecCCCCc------cccccccccCcc
Q 041473 441 SNH-FEGEVP-IKGVF-SNSSAISLDGNDNL------CGGISELHLSTC 480 (488)
Q Consensus 441 ~n~-~~~~~~-~~~~~-~~L~~l~l~~n~~~------c~~~~~l~~~~c 480 (488)
+|+ ++...+ ....+ ++|+.|++++|+.. ...++.|++++|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 996 774433 34567 89999999999765 334556666655
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=190.63 Aligned_cols=236 Identities=20% Similarity=0.228 Sum_probs=126.6
Q ss_pred CCCccEEecCCCcccccCc----hhhhhhhccccEEEccccccccccchhccCC-----CCCCEEEccCCcCCCCcccc-
Q 041473 189 ASRLEMMEISINNFGGMLP----ESVGNLSTRLKRFTVGNNQLFGNIPSGLGNL-----VNLELLDLGDNQFTGRILGS- 258 (488)
Q Consensus 189 ~~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~L~~~~~~~~~~~~- 258 (488)
.+.|+.++++++.+.+... ..+...+.+|++|++++|.++...+..+..+ ++|++|++++|.+....+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3446667776666655544 3333332256667776666665544444443 66667777666665443332
Q ss_pred ---ccCC-CCccEEEcccccccCCCCccc----cC-CccccEEecCCCccCCCCCc----cccCCC-CCcEEEccCCcCc
Q 041473 259 ---IGDL-QKLQRLRLKGNKFLGEIPSSV----GN-LTLLFTLSFEGNRLEGSIPS----SLGKCK-NLILLDLSNNNLT 324 (488)
Q Consensus 259 ---l~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~ 324 (488)
+..+ ++|++|++++|.+.+..+..+ .. +++|++|++++|.+....+. .+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2333 566677776666654433322 22 24666777766666533222 223333 6667777766665
Q ss_pred cccchhhh----cc-cCceeEEEccCCccccc----CCccccC-CCCccEEEccCCcccCCCc----cccccCCCCCEEe
Q 041473 325 GTIPTEVI----GL-SSLSIYLDLSKNQLNGP----LPSNFGI-LKNLGVLDVSENKLSGEIP----NSLGSCVRLEQLV 390 (488)
Q Consensus 325 ~~~~~~~~----~~-~~l~~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ 390 (488)
+..+..+. .. ..+ ++|++++|.+.+. ++..+.. .++|++|++++|.++...+ ..+..+++|++|+
T Consensus 181 ~~~~~~l~~~l~~~~~~L-~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 181 SKNCAELAKFLASIPASV-TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GSCHHHHHHHHHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred hhhHHHHHHHHHhCCCCC-CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 44443332 22 233 6666766666542 2223333 2466677777666664333 2334556667777
Q ss_pred cCCccccccC-------cccccCCCCCCEEeccCcccCCccc
Q 041473 391 MNGNFFQGNI-------PSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 391 l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
+++|.+.... +..+..+++|+.|++++|++....+
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 7666633222 2344555666666677666664433
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-21 Score=174.65 Aligned_cols=195 Identities=26% Similarity=0.343 Sum_probs=163.5
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
...+++|++|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45678999999999988753 257889999999999999885544 88999999999999998853 4688899999
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.+. .++. +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus 111 ~L~l~~n~l~-~~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP-LAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCC-CCGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred EEECCCCCCC-Cchh-hcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence 9999999998 4443 6677777 899999999985443 7888999999999999984 444 888999999999999
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
.+....+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9985443 7889999999999999986553 7889999999999999975
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=187.43 Aligned_cols=252 Identities=18% Similarity=0.237 Sum_probs=167.2
Q ss_pred CCccEEecCCCcccccCchhhhhh-hccccEEEccccccccccchhccCCCCCCEEEccCCcCCCC-ccccccCCCCccE
Q 041473 190 SRLEMMEISINNFGGMLPESVGNL-STRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR-ILGSIGDLQKLQR 267 (488)
Q Consensus 190 ~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~ 267 (488)
..++.++++.+.+.+ ..+... .+.++.+++.++.+....+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 346777887765542 222222 24788888888877755444 55678888888888876543 4556677788888
Q ss_pred EEcccccccCCCCccccCCccccEEecCCC-ccCCC-CCccccCCCCCcEEEccCC-cCccc-cchhhhccc-CceeEEE
Q 041473 268 LRLKGNKFLGEIPSSVGNLTLLFTLSFEGN-RLEGS-IPSSLGKCKNLILLDLSNN-NLTGT-IPTEVIGLS-SLSIYLD 342 (488)
Q Consensus 268 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~l~~~L~ 342 (488)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ .+ ++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEE
Confidence 888888766555566777888888888887 45432 4445667788888888888 77643 455566666 55 7888
Q ss_pred ccCCc--cc-ccCCccccCCCCccEEEccCCc-ccCCCccccccCCCCCEEecCCcc-ccccCcccccCCCCCCEEeccC
Q 041473 343 LSKNQ--LN-GPLPSNFGILKNLGVLDVSENK-LSGEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 343 l~~~~--~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
+++|. +. ..++..+..+++|++|++++|. ++...+..+..+++|++|++++|. +.......+.++++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 88873 33 2345556667788888888887 555666677777888888888874 3333333566778888888888
Q ss_pred cccCCccchhhhcc-ccCceeeccCcccccccCC
Q 041473 418 NNLSGRIPKYFENF-FFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 418 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~ 450 (488)
| +... .+..+ .+++.|++++|.+++..|.
T Consensus 282 ~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 282 I-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp S-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred c-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 7 3322 23333 2466666777777766553
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=173.77 Aligned_cols=192 Identities=24% Similarity=0.358 Sum_probs=162.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+++++|++.++.+.. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 589999999999875 33 58889999999999999886554 88899999999999998753 3 5889999999999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+.+. + .+..+++|++|++++|.+.+ ++. +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 99999853 3 48899999999999999984 443 6677777 899999999985443 8889999999999999984
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
++. +..+++|++|++++|++.... .+..+++|+.|++++|+++..
T Consensus 188 -~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 188 -ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred -Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 443 788999999999999998554 388999999999999999853
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-22 Score=193.52 Aligned_cols=249 Identities=22% Similarity=0.261 Sum_probs=156.8
Q ss_pred ccccEEEccccccccccc----hhccCCCCCCEEEccCCcCCC---Ccccc-------ccCCCCccEEEcccccccC---
Q 041473 215 TRLKRFTVGNNQLFGNIP----SGLGNLVNLELLDLGDNQFTG---RILGS-------IGDLQKLQRLRLKGNKFLG--- 277 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~---~~~~~-------l~~l~~L~~L~l~~~~~~~--- 277 (488)
++|++|++++|.+....+ ..+..+++|++|++++|.+.. ..+.. +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 356666666665554322 234566677777776654332 11222 2456677777777776654
Q ss_pred -CCCccccCCccccEEecCCCccCCCCCcc----ccCC---------CCCcEEEccCCcCc-cccc---hhhhcccCcee
Q 041473 278 -EIPSSVGNLTLLFTLSFEGNRLEGSIPSS----LGKC---------KNLILLDLSNNNLT-GTIP---TEVIGLSSLSI 339 (488)
Q Consensus 278 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~~~~l~~ 339 (488)
.++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+. ..++ ..+..++.+ +
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-H 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-C
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc-C
Confidence 23344566677777777777664322222 2222 67777888777775 2333 244455555 7
Q ss_pred EEEccCCcccc-----cCCccccCCCCccEEEccCCccc----CCCccccccCCCCCEEecCCcccccc----Cccccc-
Q 041473 340 YLDLSKNQLNG-----PLPSNFGILKNLGVLDVSENKLS----GEIPNSLGSCVRLEQLVMNGNFFQGN----IPSSFS- 405 (488)
Q Consensus 340 ~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~- 405 (488)
+|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.++.. .+..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 77887777652 23336677888888888888885 46677778888888888888888754 344553
Q ss_pred -CCCCCCEEeccCcccCC----ccchhh-hccccCceeeccCcccccccCC----ccccCCcceeeecC
Q 041473 406 -SLRGIQNLDLSRNNLSG----RIPKYF-ENFFFLQNLNLSSNHFEGEVPI----KGVFSNSSAISLDG 464 (488)
Q Consensus 406 -~l~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~l~l~~ 464 (488)
.+++|+.|+|++|.++. .+|..+ ..+++|++|++++|++++..+. ...+++++.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 37888888888888886 366666 5578888888888888865431 22344454454443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-23 Score=195.01 Aligned_cols=241 Identities=20% Similarity=0.207 Sum_probs=189.1
Q ss_pred ccchhccCCCCCCEEEccCCcCCCCcc----ccccCCCCccEEEccccccc---CCCCcc-------ccCCccccEEecC
Q 041473 230 NIPSGLGNLVNLELLDLGDNQFTGRIL----GSIGDLQKLQRLRLKGNKFL---GEIPSS-------VGNLTLLFTLSFE 295 (488)
Q Consensus 230 ~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~ 295 (488)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +..|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345667888999999999998875433 34778999999999997543 223333 3688999999999
Q ss_pred CCccCCC----CCccccCCCCCcEEEccCCcCccccchhhhc----c---------cCceeEEEccCCcccc-cCC---c
Q 041473 296 GNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIG----L---------SSLSIYLDLSKNQLNG-PLP---S 354 (488)
Q Consensus 296 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~l~~~L~l~~~~~~~-~~~---~ 354 (488)
+|.+... ++..+..+++|++|++++|.+.+..+..+.. + +.+ ++|++++|++.. ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC-cEEECCCCCCCcHHHHHHHH
Confidence 9999863 5667788999999999999987443433332 2 566 899999999862 333 3
Q ss_pred cccCCCCccEEEccCCcccC-----CCccccccCCCCCEEecCCcccc----ccCcccccCCCCCCEEeccCcccCCc--
Q 041473 355 NFGILKNLGVLDVSENKLSG-----EIPNSLGSCVRLEQLVMNGNFFQ----GNIPSSFSSLRGIQNLDLSRNNLSGR-- 423 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~-- 423 (488)
.+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ...+..+..+++|++|+|++|.++..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 56678999999999999873 23337888999999999999996 45677888999999999999999866
Q ss_pred --cchhhhc--cccCceeeccCccccc----ccCC-c-cccCCcceeeecCCCCcccc
Q 041473 424 --IPKYFEN--FFFLQNLNLSSNHFEG----EVPI-K-GVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 424 --~~~~l~~--l~~L~~L~l~~n~~~~----~~~~-~-~~~~~L~~l~l~~n~~~c~~ 471 (488)
++..+.. +++|+.|++++|+++. .+|. . ..+++|+.|++++|+....+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4566644 8999999999999987 3553 3 44799999999999887655
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-22 Score=185.08 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=188.2
Q ss_pred ccccEEEccccccccccchhccCC--CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC-CCccccCCccccE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNL--VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE-IPSSVGNLTLLFT 291 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 291 (488)
..++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35888999888765 4455666 8899999999988765554 45689999999999987644 5666788999999
Q ss_pred EecCCCccCCCCCccccCCCCCcEEEccCC-cCccc-cchhhhcccCceeEEEccCC-ccccc-CCccccCCC-CccEEE
Q 041473 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNN-NLTGT-IPTEVIGLSSLSIYLDLSKN-QLNGP-LPSNFGILK-NLGVLD 366 (488)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~ 366 (488)
|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..++.+ ++|++++| .+.+. .+..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999887667778888999999999999 56643 56667777777 89999999 87743 456677888 999999
Q ss_pred ccCCc--cc-CCCccccccCCCCCEEecCCcc-ccccCcccccCCCCCCEEeccCcc-cCCccchhhhccccCceeeccC
Q 041473 367 VSENK--LS-GEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFENFFFLQNLNLSS 441 (488)
Q Consensus 367 l~~n~--l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 441 (488)
+++|. ++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 99994 44 3556677789999999999998 666677788889999999999995 3333334678899999999999
Q ss_pred cccccccCCcccc-CCcceeeecCCCCc
Q 041473 442 NHFEGEVPIKGVF-SNSSAISLDGNDNL 468 (488)
Q Consensus 442 n~~~~~~~~~~~~-~~L~~l~l~~n~~~ 468 (488)
| ++. .....+ ..++.|++++|...
T Consensus 282 ~-i~~--~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 282 I-VPD--GTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp S-SCT--TCHHHHHHHSTTSEESCCCSC
T ss_pred c-cCH--HHHHHHHhhCcceEEecccCc
Confidence 9 332 112223 45777778777543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=172.89 Aligned_cols=203 Identities=21% Similarity=0.170 Sum_probs=131.0
Q ss_pred ccccEEEccccccccccchhc--cCCCCCCEEEccCCcCCCCcc----ccccCCCCccEEEcccccccCCCCccccCCcc
Q 041473 215 TRLKRFTVGNNQLFGNIPSGL--GNLVNLELLDLGDNQFTGRIL----GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL 288 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 288 (488)
++|++|++++|.+....|..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 469999999999888777777 889999999999999875332 34456899999999999998777788999999
Q ss_pred ccEEecCCCccCCC----CCccccCCCCCcEEEccCCcCccccchh----hhcccCceeEEEccCCcccccCCccccCCC
Q 041473 289 LFTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTE----VIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360 (488)
Q Consensus 289 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~ 360 (488)
|++|++++|.+.+. .+..+..+++|++|++++|.++ .++.. +..++.+ ++|++++|.+.+..|..+..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP-HSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC-SSEECTTSCCCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC-CEEECCCCCCCccchhhHHhcc
Confidence 99999999987532 1233467889999999999886 33332 1222333 4455555554433333333321
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
.+++|++|++++|+++ ..|..+. ++|+.|++++|++++. |. +..+++|+.|+++
T Consensus 249 ---------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 249 ---------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLD 302 (310)
T ss_dssp ---------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECS
T ss_pred ---------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECc
Confidence 0135555555555554 2233222 4555555555555532 21 3445555555555
Q ss_pred Ccccc
Q 041473 441 SNHFE 445 (488)
Q Consensus 441 ~n~~~ 445 (488)
+|+++
T Consensus 303 ~N~l~ 307 (310)
T 4glp_A 303 GNPFL 307 (310)
T ss_dssp STTTS
T ss_pred CCCCC
Confidence 55554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=174.07 Aligned_cols=245 Identities=20% Similarity=0.177 Sum_probs=149.1
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC-ccccCCccccE-EecC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP-SSVGNLTLLFT-LSFE 295 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l~ 295 (488)
+.++.+++.++ .+|..+ .+++++|++++|.+......+|.++++|++|++++|.+.+.++ ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444555554 234333 3466777777777765555566777777777777776654333 34566666554 3444
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccC-CcccccCCccccCCC-CccEEEccCCccc
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK-NQLNGPLPSNFGILK-NLGVLDVSENKLS 373 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~-~~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 373 (488)
.|.+....+.+|..+++|++|++++|.+....+..+.....+ ..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK-VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC-EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchh-hhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 566665556667777777777777777663333333333343 5666654 345544445555543 5777888888877
Q ss_pred CCCccccccCCCCCEEecCC-ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcc
Q 041473 374 GEIPNSLGSCVRLEQLVMNG-NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 452 (488)
.++.......+|+++++.+ |.++.+.+++|.++++|+.|++++|+++...+..| .+|+.|.+.+|.....+|...
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTT
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCch
Confidence 4444444556778888764 56665555677788888888888888774444333 455555555555555677777
Q ss_pred ccCCcceeeecCCCCcccc
Q 041473 453 VFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 453 ~~~~L~~l~l~~n~~~c~~ 471 (488)
.+++|+.+++++ |+.|.+
T Consensus 244 ~l~~L~~l~l~~-~~~c~~ 261 (350)
T 4ay9_X 244 KLVALMEASLTY-PSHCCA 261 (350)
T ss_dssp TCCSCCEEECSC-HHHHHH
T ss_pred hCcChhhCcCCC-Cccccc
Confidence 778888887753 455443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=157.44 Aligned_cols=179 Identities=21% Similarity=0.273 Sum_probs=134.1
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 369 (488)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56778777777 4555444 678888888888885555566666666 7888888888877788888888888888888
Q ss_pred CcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 370 NKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
|.++...+..|..+++|++|++++|.+....+..|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88885545557788888888888888887777888888888888888888887777778888888888888888887776
Q ss_pred CccccCCcceeeecCCCCccccc
Q 041473 450 IKGVFSNSSAISLDGNDNLCGGI 472 (488)
Q Consensus 450 ~~~~~~~L~~l~l~~n~~~c~~~ 472 (488)
..+....++.-.+......|.+-
T Consensus 170 l~~l~~~l~~~~~~~~~~~C~~P 192 (220)
T 2v9t_B 170 LKWLADYLHTNPIETSGARCTSP 192 (220)
T ss_dssp GHHHHHHHHHCCCBCSCCBEEES
T ss_pred cHHHHHHHHhCCCCccCCCcCCc
Confidence 54444333333334444556653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=156.80 Aligned_cols=177 Identities=21% Similarity=0.242 Sum_probs=132.6
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
+.++++++.++ .+|..+. +.+++|++++|.+++..+. .+..++.+ ++|++++|.+.+..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35666666665 3444433 3456777777777644332 34555555 777777777776666788888999999999
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 448 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 448 (488)
+|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+++..|..|..+++|+.|++++|++.+.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998777777888999999999999999888888999999999999999999888889999999999999999999888
Q ss_pred CCccccCCcceeee-cCCCCcccc
Q 041473 449 PIKGVFSNSSAISL-DGNDNLCGG 471 (488)
Q Consensus 449 ~~~~~~~~L~~l~l-~~n~~~c~~ 471 (488)
+..+....++.-.+ .+++ .|+.
T Consensus 170 ~l~~l~~~~~~~~~~~~~~-~C~~ 192 (220)
T 2v70_A 170 YLAWLGEWLRKKRIVTGNP-RCQK 192 (220)
T ss_dssp GGHHHHHHHHHSCCBCCCC-EEEE
T ss_pred chHHHHHHHHhcCccccCC-ccCC
Confidence 76555444443333 3443 6665
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=155.55 Aligned_cols=134 Identities=28% Similarity=0.319 Sum_probs=69.8
Q ss_pred ccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEE
Q 041473 287 TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366 (488)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 366 (488)
+++++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..++.+ ++|++++|.+....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-NSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-CEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 455555555555554444445555555555555555554444445444444 5555555555544444445555555555
Q ss_pred ccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 367 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+++|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555444445555555555555555555444444555555555555555544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-19 Score=153.24 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=137.2
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-ccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
-+.++++++.++ .+|..+. ...++|++++|.+.+..+ ..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 358999999988 6776553 333799999999997644 56889999999999999999776778999999999999
Q ss_pred CCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCccc
Q 041473 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNLCG 470 (488)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~c~ 470 (488)
++|.++...+..|.++++|++|++++|++++..|..|.++++|++|++++|.+++..| ....+++|+.|++++||+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999998888899999999999999999998889999999999999999999997655 567799999999999999997
Q ss_pred c
Q 041473 471 G 471 (488)
Q Consensus 471 ~ 471 (488)
+
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-19 Score=167.07 Aligned_cols=182 Identities=23% Similarity=0.203 Sum_probs=136.6
Q ss_pred ccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCcccc-CCCCCcEEEccCCcCccccchhhhcccCceeEEEc
Q 041473 265 LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLG-KCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDL 343 (488)
Q Consensus 265 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l 343 (488)
-+.++++++.+. .+|..+ .+.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..++.+ ++|++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDL 95 (361)
T ss_dssp TTEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEEC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEEC
Confidence 357888888776 344433 35688888888888866666676 78888888888888885555667777766 78888
Q ss_pred cCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccc---cCCCCCCEEeccCccc
Q 041473 344 SKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF---SSLRGIQNLDLSRNNL 420 (488)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~~ 420 (488)
++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..| ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8888876667778888888888888888886667778888888888888888886555556 4578888888888888
Q ss_pred CCccchhhhcccc--CceeeccCcccccccCC
Q 041473 421 SGRIPKYFENFFF--LQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 421 ~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~ 450 (488)
+...+..+..++. ++.|++++|++.+.+..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 8666677777776 47788888888876653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=147.97 Aligned_cols=154 Identities=24% Similarity=0.215 Sum_probs=86.8
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEc
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDV 367 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 367 (488)
++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL-TYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc-CEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 44444444444443333334444444444444444442222222333333 44445545444344444566667777777
Q ss_pred cCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc
Q 041473 368 SENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 368 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
++|.++...+..|..+++|+.|++++|.++...+..+..+++|++|++++|++.. .+++|++|++++|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 7777764444556667777777777777765555566777777777777776552 345677777777777766
Q ss_pred cC
Q 041473 448 VP 449 (488)
Q Consensus 448 ~~ 449 (488)
+|
T Consensus 181 ip 182 (208)
T 2o6s_A 181 VR 182 (208)
T ss_dssp BB
T ss_pred ee
Confidence 66
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=148.73 Aligned_cols=170 Identities=22% Similarity=0.192 Sum_probs=118.8
Q ss_pred CCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEE
Q 041473 263 QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~ 342 (488)
+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++.+ ++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-KELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-CEEE
Confidence 456666666666664444455666666666666666665555555666777777777776663333334555555 6777
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
+++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..+++|+.|++..|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 7777776556666778888999999999888555556788899999999998665 356789999999999998
Q ss_pred ccchhhhccccCceeeccCccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
.+|..++.++. ++..|..
T Consensus 180 ~ip~~~~~l~~----~~~~C~~ 197 (208)
T 2o6s_A 180 VVRNSAGSVAP----DSAKCSG 197 (208)
T ss_dssp TBBCTTSSBCT----TCSBBTT
T ss_pred eeeccCccccC----Ccccccc
Confidence 89988876655 4444543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=150.48 Aligned_cols=156 Identities=26% Similarity=0.302 Sum_probs=115.0
Q ss_pred ccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 289 LFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
.+.++++++.+. .+|..+. ++|+.|++++|.+.+..+..+..++.+ ++|++++|.+....+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777766 4554443 678888888888876666667677666 788888888775556667777888888888
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 448 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 448 (488)
+|.++...+..|..+++|++|++++|.+. ..|..+..+++|+.|++++|+++...+..|..+++|+.|++++|++.+.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88887555556677788888888888877 55666677788888888888877666667777788888888888887766
Q ss_pred C
Q 041473 449 P 449 (488)
Q Consensus 449 ~ 449 (488)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=156.78 Aligned_cols=173 Identities=24% Similarity=0.313 Sum_probs=142.9
Q ss_pred ccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCce
Q 041473 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS 338 (488)
Q Consensus 259 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 338 (488)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+..++.+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L- 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKL- 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTC-
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCCCC-
Confidence 45678999999999988744 3 37889999999999999985544 888999999999999987 444 36667777
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 8999999998853 4677889999999999998843 578889999999999999886544 888999999999999
Q ss_pred ccCCccchhhhccccCceeeccCccccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
.++.. + .+..+++|+.|++++|+++.
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 98854 3 48889999999999998875
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=157.44 Aligned_cols=222 Identities=20% Similarity=0.197 Sum_probs=164.2
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCC-CccccccCCCCccE-EEcccccccCCCCccccCCccccEE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQKLQR-LRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
+++++|++++|.++...+..|.++++|++|+|++|.+.+ .....|.+++++++ +.+.+|.+....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578899999998886666678899999999999998754 34456788888765 4556677876667788899999999
Q ss_pred ecCCCccCCCCCccccCCCCCcEEEccCC-cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC-C
Q 041473 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNN-NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE-N 370 (488)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n 370 (488)
++++|.+....+..+....++..+++.++ .+....+..+......+++|++++|.+....+..|. ..+|+++++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence 99999888666666666777888888765 455333344555555457899999998855555554 46789999975 5
Q ss_pred cccCCCc-cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 371 KLSGEIP-NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 371 ~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
.++ .+| ..|.++++|++|++++|+++...+.. +.+|+.|.+.++.-.+.+| .+..+++|+.+++.++
T Consensus 189 ~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 189 NLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 666 554 56888999999999999988655444 4556677766665554666 4778889999988754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-18 Score=160.58 Aligned_cols=177 Identities=22% Similarity=0.140 Sum_probs=131.3
Q ss_pred CEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCcccc-CCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVG-NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 242 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
+.++++++.+... +..+. +.++.|++++|.+....+..+. .+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5778887777643 33332 4578888888888766666666 788888888888888866667788888888888888
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc---ccCCCCCEEecCCcccc
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL---GSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~ 397 (488)
|.+....+..+..+..+ ++|++++|.+....+..|..+++|++|++++|.++...+..| ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88875555556666666 788888888887777788888888888888888884333334 46788888888888888
Q ss_pred ccCcccccCCCC--CCEEeccCcccCC
Q 041473 398 GNIPSSFSSLRG--IQNLDLSRNNLSG 422 (488)
Q Consensus 398 ~~~~~~~~~l~~--L~~L~l~~n~~~~ 422 (488)
...+..+..++. ++.|++++|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 666667777776 4788888888763
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=146.16 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=119.0
Q ss_pred CccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEc
Q 041473 264 KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDL 343 (488)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l 343 (488)
..+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..++.+ ++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-TVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-CEEEC
Confidence 4567777777766 344333 3788888888888887777778888888888888888873333445566666 78888
Q ss_pred cCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 344 SKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+....+..|..+++|+.|++++|++...
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888888666677788888888888888888 7777788888888888888888866667788888888888888887744
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.94 Aligned_cols=194 Identities=21% Similarity=0.302 Sum_probs=156.3
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
..+.+....+.+.. .+..+++|++|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 33444454444322 245688999999999988754 347889999999999999885544 889999999999999
Q ss_pred ccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCc
Q 041473 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP 377 (488)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 377 (488)
.+.+ ...+..+++|++|++++|.+.+ + ..+..++.+ ++|++++|.+.+. ..+..+++|++|++++|.+++..+
T Consensus 101 ~l~~--~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 101 KVKD--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCCC--GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCC--ChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 9874 3448899999999999999984 4 356677777 8999999999854 578889999999999999985444
Q ss_pred cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhh
Q 041473 378 NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428 (488)
Q Consensus 378 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 428 (488)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.......+
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred --hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCccccc
Confidence 88999999999999999854 3 48899999999999999986544333
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-18 Score=144.11 Aligned_cols=154 Identities=27% Similarity=0.367 Sum_probs=103.3
Q ss_pred cEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCc-cccCCCCccEEEccCCcccCCCccccccCCCCCEEecC
Q 041473 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS-NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 314 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 392 (488)
+.++++++.++ .+|..+.. .+ ++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45555555554 44443322 22 5666666666544432 36677777777777777776667777777777777777
Q ss_pred CccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+|.++...+..|.++++|++|++++|++++..|..|..+++|++|++++|++.+.++..+....++...+.++...|+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 7777766667777777788888888877777777777777788888888887777765555555555556666666655
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=160.03 Aligned_cols=186 Identities=26% Similarity=0.321 Sum_probs=82.7
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
+++.|+++++.++. +|..+ +++|++|++++|.+... + ..+++|++|++++|.+.. +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 33322 24555555555555422 2 223455555555555543 333 322 55555555
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+++ +|. .+++|+.|++++|.++ .+|. .++.+ ++|++++|.+.+ +|. +. ++|++|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 555543 332 3445555555555554 2333 12222 445555555443 332 32 44555555555544 3
Q ss_pred CccccccCCCC-------CEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhc
Q 041473 376 IPNSLGSCVRL-------EQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEN 430 (488)
Q Consensus 376 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 430 (488)
+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++++.+|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 333 222 33 444444444442 3333333444444444444444444444433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=160.32 Aligned_cols=182 Identities=25% Similarity=0.350 Sum_probs=146.2
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
.+++.|+++++.+.+ .+..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999998876 33333 378999999999988 455 457999999999999986 665 554 8999999
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
++|.+++ +|. .++.+ ++|++++|.+.+ +|. .+++|++|++++|.++. +|. +. ++|+.|++++|.++
T Consensus 128 s~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 9999984 666 34555 899999999985 554 56899999999999984 776 65 89999999999998
Q ss_pred cCcccccCCCCC-------CEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 399 NIPSSFSSLRGI-------QNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 399 ~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 4454 543 66 99999999999 577778789999999999999987655
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.2e-18 Score=167.50 Aligned_cols=189 Identities=23% Similarity=0.287 Sum_probs=154.5
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
+..+.+..+.+... ..+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 34445555555432 2345678999999999988743 3 47889999999999999986544 88899999999999
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+. .++ .+..++.+ ++|++++|.+.+. ..+..+++|+.|+|++|.++.. ..+..+++|+.|++++|.+....
T Consensus 97 N~l~-~l~-~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIK-DLS-SLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCC-CCT-TSTTCTTC-CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCC-CCh-hhccCCCC-CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 9987 444 56677777 8999999999853 4588899999999999999844 57888999999999999998655
Q ss_pred cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+ +..+++|+.|+|++|+++.. ..+..+++|+.|++++|+++.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5 88999999999999999864 368899999999999999875
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=141.06 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=80.7
Q ss_pred cCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCcc
Q 041473 284 GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLG 363 (488)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~ 363 (488)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++ . +..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-------------------------l~~l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-------------------------ISGLSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-------------------------GTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-------------------------hhcCCCCC
Confidence 45666777777777666 333 4566666777777666443 221 2 33445555
Q ss_pred EEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc-cCCccchhhhccccCceeeccCc
Q 041473 364 VLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
+|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|. +. .++ .+..+++|++|++++|
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTB
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCC
Confidence 55555555554444455555555555555555554444555555555555555555 33 233 3555555555555555
Q ss_pred ccccccCCccccCCcceeeecCCC
Q 041473 443 HFEGEVPIKGVFSNSSAISLDGND 466 (488)
Q Consensus 443 ~~~~~~~~~~~~~~L~~l~l~~n~ 466 (488)
+++. ++....+++|+.|++++|+
T Consensus 170 ~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 170 GVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCC-CTTGGGCSSCCEEEECBC-
T ss_pred CCcC-hHHhccCCCCCEEEeeCcc
Confidence 5542 3344445555555555554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=140.35 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=105.2
Q ss_pred cCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCcee
Q 041473 260 GDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI 339 (488)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 339 (488)
..+++|+.|++++|.+. ..+ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPN--------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCC---------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChh---------
Confidence 56789999999999988 444 5888999999999999765 4457888999999999999877434433
Q ss_pred EEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcc-ccccCcccccCCCCCCEEeccCc
Q 041473 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+..+++|++|++++|.+++..+..+..+++|++|++++|. +.+ .+ .+.++++|+.|++++|
T Consensus 108 ----------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 108 ----------------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp ----------------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTB
T ss_pred ----------------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCC
Confidence 3445566666666666665555556666666666666665 442 33 4566667777777777
Q ss_pred ccCCccchhhhccccCceeeccCcccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
.++.. + .+..+++|++|++++|++.
T Consensus 170 ~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66642 2 5666677777777777654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=149.04 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=135.9
Q ss_pred CCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEE
Q 041473 262 LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L 341 (488)
+.+++.+++.++.+.+.. .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+. .++. +..++.+ ++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L-~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKL-EEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSC-CEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCC-CEE
Confidence 456777788888776443 46788999999999998873 44 6788899999999999988 4444 6777777 899
Q ss_pred EccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 342 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
++++|.+.+. +. +.. ++|++|++++|.+++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999998853 32 223 889999999999884 43 588899999999999998854 3 6788899999999999998
Q ss_pred CccchhhhccccCceeeccCcccccc
Q 041473 422 GRIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 422 ~~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 66 6788889999999999998754
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=162.03 Aligned_cols=176 Identities=23% Similarity=0.347 Sum_probs=122.3
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
+..+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ . ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34566677777777766533 245667777777777777664433 6677777777777777763 2 2566777777
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
.|++++|.+.+ ++ .+..++.+ +.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~-l~-~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD-IN-GLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC-CG-GGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC-Cc-cccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 77777777763 33 35556666 6777777777643 467778888888888888875444 778888888888888
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccc
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
.+... ..+..+++|+.|+|++|++.....
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 88753 357788888888888888875433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=153.28 Aligned_cols=295 Identities=10% Similarity=0.044 Sum_probs=143.9
Q ss_pred ccCcccccC--CccCcEEeccCCCCCCCcCccccC-Ccccccccccccccc--cccchhhcCCCCccEEEeecccccccc
Q 041473 6 GKVPGKLGS--LSKLRTLAVHFNNLSGEIPSSFGN-LSSLEFLSAAVNQFV--GQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 6 ~~l~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
|.++..+.. +++++.|.++++ +.......+.. +++|+.|++++|.+. ......+ +.++.+.+..+.+ .
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---P 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---C
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---C
Confidence 444444443 566777777664 22111122333 666777777777765 2222222 2245555555533 2
Q ss_pred chhhhc--------cCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCC---
Q 041473 81 PFSIYN--------LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGF--- 149 (488)
Q Consensus 81 ~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--- 149 (488)
...|.+ +++|+.+++.+ .++ .++...+..+++|+.+++.++.+....+..|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 445556 77777777777 666 66666666777777777777776655566666666666555443211
Q ss_pred -c-cCCCCcccccccc-eeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccc
Q 041473 150 -S-GKVPSLENLYKLQ-RVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQ 226 (488)
Q Consensus 150 -~-~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 226 (488)
. .....+..+..|+ .+.+..... . .......-.....+..+.+.+.-.. .....+...+++|+++++.++.
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~--l---~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGK--L---EDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCC--H---HHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred cccccccccccccccceeEEecCCCc--H---HHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence 0 0111133333333 222211100 0 0000111111222333333322111 1111112223456666666555
Q ss_pred cccccchhccCCCCCCEEEccCCcCCCCccccccCCCCcc-EEEcccccccCCCCccccCCccccEEecCCCccCCCCCc
Q 041473 227 LFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ-RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS 305 (488)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 305 (488)
++...+..|.++.+|+++++.++ +..+...+|.++.+|+ .+.+.+ .+....+..|.+|++|+.++++.+.+....+.
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 55444555555666666666554 4444455555555565 666655 34434445555566666666555555544555
Q ss_pred cccCCCCCcEEE
Q 041473 306 SLGKCKNLILLD 317 (488)
Q Consensus 306 ~~~~~~~L~~L~ 317 (488)
+|.++++|+.++
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 555555555554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=135.67 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=105.1
Q ss_pred cEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCC
Q 041473 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG 393 (488)
Q Consensus 314 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 393 (488)
+.++++++.++ .+|..+. ..+ ++|++++|.+. .+|..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56777777776 5665432 233 67778877777 5556777777788888888877766666677777888888888
Q ss_pred ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccccc
Q 041473 394 NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGIS 473 (488)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~~~ 473 (488)
|.++...+..|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+.+...+....++..........|.+-+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 87776666777777788888888887776666667777778888888887777666444433333322333334565533
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=150.76 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=128.0
Q ss_pred CCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCc----cCCCCCccccCCCCC
Q 041473 238 LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR----LEGSIPSSLGKCKNL 313 (488)
Q Consensus 238 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~L 313 (488)
+++|+++++.+ .+..+...+|.++++|+.+++.+|.+....+..|..+.++..+...... .......+|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88888888887 6766677778888888888888887766666777777777777665532 222344556666676
Q ss_pred c-EEEccCCcCccccchhhhc----ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCE
Q 041473 314 I-LLDLSNNNLTGTIPTEVIG----LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388 (488)
Q Consensus 314 ~-~L~l~~~~~~~~~~~~~~~----~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (488)
+ .+.+.... .++..+.. .... ..+.+.+.-...........+++|+++++++|.++...+.+|.+|++|++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 6 44444332 22222221 1111 23333332111000001112566777777777666455556777777777
Q ss_pred EecCCccccccCcccccCCCCCC-EEeccCcccCCccchhhhccccCceeeccCcccccccC-CccccCCcceee
Q 041473 389 LVMNGNFFQGNIPSSFSSLRGIQ-NLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAIS 461 (488)
Q Consensus 389 L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~ 461 (488)
+++.+| +..+...+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.++..-+ .....++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 777766 5556666777777777 777776 5655566677777777777777766653222 344455555543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=144.96 Aligned_cols=174 Identities=25% Similarity=0.309 Sum_probs=143.4
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILL 316 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (488)
.+.++..++++++.+.+.. .+..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3456677788888877433 56788999999999998874 44 58889999999999999985544 8899999999
Q ss_pred EccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccc
Q 041473 317 DLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFF 396 (488)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 396 (488)
++++|.++ .++.... ..+ ++|++++|.+.+. ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 91 ~L~~N~l~-~l~~~~~--~~L-~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 91 SVNRNRLK-NLNGIPS--ACL-SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCS-CCTTCCC--SSC-CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred ECCCCccC-CcCcccc--Ccc-cEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 99999998 4554332 455 8999999999853 358889999999999999984 44 688899999999999999
Q ss_pred cccCcccccCCCCCCEEeccCcccCCccch
Q 041473 397 QGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426 (488)
Q Consensus 397 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 426 (488)
.+. ..+..+++|+.|++++|++......
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred cch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 865 6788999999999999999865433
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=133.97 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=73.6
Q ss_pred EEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc
Q 041473 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419 (488)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 419 (488)
+++++++.+. .+|..+. ++|++|++++|.++ .+|..|..+++|+.|++++|.++...+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 3333322 45666666666665 555556666666666666666665555556666666666666666
Q ss_pred cCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCcccc
Q 041473 420 LSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 420 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++...+..|.++++|+.|++++|.++...+ ....+++|+.|++++|||.|++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 665555556666666666666666653332 2344556666666666666544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-15 Score=140.41 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=33.8
Q ss_pred ccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEc
Q 041473 53 VGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120 (488)
Q Consensus 53 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 120 (488)
+.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++ .++...+..+..|+.+.+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILL 124 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhcc
Confidence 3344555666666666666532 44344455566666666666543 33 444444444555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-18 Score=169.73 Aligned_cols=192 Identities=23% Similarity=0.207 Sum_probs=133.1
Q ss_pred CCCccEEEcccccccCCCCccccCCccccEEecCCCc-------------cCCCCCccccCCCCCcEEE-ccCCcCcccc
Q 041473 262 LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR-------------LEGSIPSSLGKCKNLILLD-LSNNNLTGTI 327 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~ 327 (488)
.++|+.|++++|.+. .+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.+.+. .+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hh
Confidence 445555555555544 344445555555555554332 2223344455555566655 3333222 11
Q ss_pred ch------hhhc--ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccccc
Q 041473 328 PT------EVIG--LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399 (488)
Q Consensus 328 ~~------~~~~--~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 399 (488)
+. .+.. ...+ ++|++++|.+.+ +|. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.++.
T Consensus 426 ~~l~l~~n~i~~l~~~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccCccCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 10 0000 1123 789999999985 565 888999999999999999 889999999999999999999985
Q ss_pred CcccccCCCCCCEEeccCcccCCcc-chhhhccccCceeeccCcccccccCCcc----ccCCcceee
Q 041473 400 IPSSFSSLRGIQNLDLSRNNLSGRI-PKYFENFFFLQNLNLSSNHFEGEVPIKG----VFSNSSAIS 461 (488)
Q Consensus 400 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~~L~~l~ 461 (488)
.| .+.++++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|... .+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55 7889999999999999999776 8999999999999999999987666433 266777764
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=128.96 Aligned_cols=174 Identities=22% Similarity=0.317 Sum_probs=123.8
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
++++++++.+. .+|..+. +++++|++++|.+.+..+. .+..++.+ ++|++++|.+.+..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666665 4454443 3677777777777644333 25566666 778888888877777888888999999999
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++++|++....+ .++.. .++...+.++...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence 999987777778899999999999999998888899999999999999999986543 22222 233344555655555
Q ss_pred cCCccccCCcceeeecCCCCcccc
Q 041473 448 VPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 448 ~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.| ..+....-.++..+...|.+
T Consensus 165 ~P--~~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 165 AP--SKVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp SS--TTTTTSBGGGSCTTTCCCCC
T ss_pred CC--hHHcCCChhhCcHhhcCcCC
Confidence 45 23444555566677777764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=126.41 Aligned_cols=133 Identities=22% Similarity=0.211 Sum_probs=90.6
Q ss_pred CCCcEEEccCCcCc-cccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEE
Q 041473 311 KNLILLDLSNNNLT-GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389 (488)
Q Consensus 311 ~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (488)
++|+.|++++|.+. +.+|..+..++.+ ++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666554 3445444455554 5666666665533 456667778888888888775566666667888888
Q ss_pred ecCCccccccCc-ccccCCCCCCEEeccCcccCCccc---hhhhccccCceeeccCccccc
Q 041473 390 VMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRIP---KYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 390 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~~ 446 (488)
++++|.++.... ..+..+++|+.|++++|+++...+ ..+..+++|++|++++|....
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888887774322 667778888888888888875554 467778888888888887764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-14 Score=134.07 Aligned_cols=332 Identities=12% Similarity=0.056 Sum_probs=166.6
Q ss_pred CcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhc
Q 041473 31 EIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF 110 (488)
Q Consensus 31 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 110 (488)
+...+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +. .+....+.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeee
Confidence 4456677777777777763 355555667777777777777654 44345556667777777666543 22 33333333
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCC
Q 041473 111 TLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNAS 190 (488)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 190 (488)
.+.. ....+... ........|.++.+|+.+.+..+........+..+.+|+.+.+..+ +.... ...+..+.
T Consensus 138 ~~~~-~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~------~~~F~~~~ 208 (394)
T 4fs7_A 138 GCDF-KEITIPEG-VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIR------DYCFAECI 208 (394)
T ss_dssp TCCC-SEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEEC------TTTTTTCT
T ss_pred cccc-cccccCcc-ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeC------chhhcccc
Confidence 3332 22222221 1223345667777777777765433322333566666666655432 11000 01111222
Q ss_pred CccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEc
Q 041473 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270 (488)
Q Consensus 191 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 270 (488)
.|+.+.+. ..... ..........|+.+.+... ........+..+..++.+.+
T Consensus 209 ~L~~i~~~-------------------------~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 209 LLENMEFP-------------------------NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISI 260 (394)
T ss_dssp TCCBCCCC-------------------------TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEE
T ss_pred ccceeecC-------------------------CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEc
Confidence 22222221 11100 0111112233444444322 11122233444444555544
Q ss_pred ccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc
Q 041473 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
..+... .....|..++.++.+......+ ...+|..+.+|+.+.+. .+ +..
T Consensus 261 ~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~-------------------------~~-i~~ 310 (394)
T 4fs7_A 261 QNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL-------------------------DS-VKF 310 (394)
T ss_dssp CCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC-------------------------TT-CCE
T ss_pred CCCcce-eeccccccccccceeccCceee---ccccccccccccccccc-------------------------cc-cce
Confidence 433211 2233344444444444433221 11233344444444432 22 222
Q ss_pred cCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhc
Q 041473 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEN 430 (488)
Q Consensus 351 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 430 (488)
+...+|..+++|+.+++..+ ++.....+|.+|++|+.+++..+ ++.+...+|.+|++|+.+++..+ +. .+..+|.+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~ 386 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFED 386 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCT
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecC
Confidence 34456777777888877644 54455667888888888888766 66677788888888888888754 22 23456777
Q ss_pred cccCcee
Q 041473 431 FFFLQNL 437 (488)
Q Consensus 431 l~~L~~L 437 (488)
+++|+.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 7777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-18 Score=167.78 Aligned_cols=122 Identities=25% Similarity=0.337 Sum_probs=100.6
Q ss_pred CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
.|+.|++++|.++ .+|. +..++.+ ++|++++|.+. .+|..+..+++|++|++++|.++ .+| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEEC
Confidence 5788888888887 4665 7777776 78888888888 67788888999999999999998 467 7888999999999
Q ss_pred CCccccccC-cccccCCCCCCEEeccCcccCCccc---hhhhccccCceeec
Q 041473 392 NGNFFQGNI-PSSFSSLRGIQNLDLSRNNLSGRIP---KYFENFFFLQNLNL 439 (488)
Q Consensus 392 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l 439 (488)
++|.++... |..+..+++|+.|++++|++++..+ ..+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998765 8889999999999999999986644 33455888988864
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=124.36 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=106.4
Q ss_pred CccCcEEeccCCCCC-CCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEE
Q 041473 15 LSKLRTLAVHFNNLS-GEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLL 93 (488)
Q Consensus 15 ~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 93 (488)
.++|++|++++|.++ +.++..+..+++|+.|++++|.+... ..+..+++|++|++++|.++..+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 477899999998887 56777788889999999999988755 668888999999999998886677777788899999
Q ss_pred ecccCCcCCCCCc-chhccCCCCcEEEcCCCcccccCC---ccccCCCCCceeecccCCCccC
Q 041473 94 DFPVNQLQGSLPS-DIGFTLPNLEVLNFGNNQFTGPIP---ASISNASNLMRLTIQKNGFSGK 152 (488)
Q Consensus 94 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 152 (488)
++++|.++ .++. ..+..+++|+.|++++|++....+ ..+..+++|+.|++++|.....
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999887 5552 333368888999998888874333 3677888888888888776543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-15 Score=123.73 Aligned_cols=135 Identities=24% Similarity=0.297 Sum_probs=103.3
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecC
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 392 (488)
.+.++++++.+. .+|..+. ..+ ++|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467888888776 5564432 333 788888888886666677788888888888888885555567788888888888
Q ss_pred CccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
+|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+.+|..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 88888766677788888888888888888666666777888888888888888776643
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=123.77 Aligned_cols=130 Identities=23% Similarity=0.283 Sum_probs=65.1
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 369 (488)
+.++++++.+. ..|..+. ++|+.|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQL-TKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccc-cEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555544 2232221 455555555555553333333444444 5555555555544444455555555555555
Q ss_pred CcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 370 NKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|++...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 555533334445555555555555555544444455555555555555555533
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=121.96 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=48.0
Q ss_pred ccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccccc-CcccccCCCCCCEEeccCcccCCccc---hhhhcc
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGRIP---KYFENF 431 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l 431 (488)
+..+++|++|++++|.+++.+|..+..+++|++|++++|.++.. .+..+..+++|++|++++|++++..+ ..+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 34455566666666666544555555566666666666665532 22455556666666666666654443 355566
Q ss_pred ccCceeecc
Q 041473 432 FFLQNLNLS 440 (488)
Q Consensus 432 ~~L~~L~l~ 440 (488)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 666666554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=155.78 Aligned_cols=119 Identities=32% Similarity=0.445 Sum_probs=55.7
Q ss_pred ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCC
Q 041473 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 384 (488)
Q Consensus 305 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 384 (488)
..+..+++|+.|++++|.+. .+|..++.++.+ ++|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFL-TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSC-SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCC-CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 33444444444444444444 344444444443 44444444444 34444444555555555555555 4454555555
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhh
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 428 (488)
+|++|++++|.++ .+|..|..+++|+.|+|++|++++.+|..+
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 5555555555554 333345555555555555555554444444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=120.71 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=102.9
Q ss_pred CCccCcEEeccCCCCC-CCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 14 SLSKLRTLAVHFNNLS-GEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
..+++++|++++|.++ +.++..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999887 57777888899999999999988755 66888899999999999988667887888899999
Q ss_pred EecccCCcCCCCC--cchhccCCCCcEEEcCCCcccccCC---ccccCCCCCceeecc
Q 041473 93 LDFPVNQLQGSLP--SDIGFTLPNLEVLNFGNNQFTGPIP---ASISNASNLMRLTIQ 145 (488)
Q Consensus 93 L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 145 (488)
|++++|.++ .++ ..+ ..+++|+.|++++|++....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~-~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIK-DLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCC-SHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCC-ChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999887 543 333 368889999999888874443 367778888888775
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=132.61 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=151.2
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
+|+++.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++++|+.+++.++.+.......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5666766554 444445556553 577777775 45545566777778888888877776655455555 5778888876
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc--
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-- 373 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-- 373 (488)
.+ +......+|..|++|+.+.+..+ ++ .++...+....+ +.+.+. +.+......+|..+++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~~L-~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRESGI-TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTCCC-SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccCCc-cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 43 55456667778888888888764 33 333333333444 677774 3344466778888888888888877654
Q ss_pred ---CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 374 ---GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 374 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
...+.+|.+|++|+.+.+.+ .+..+...+|.+|.+|+.++|..+ ++.....+|.++ +|+.+++.+|....
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 34556788888888888884 477677888888888998888654 665677888888 88888888886653
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=128.53 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=71.4
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCC-----CCccccccCCCCccEEEcccccccCCCCccccCCcccc
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFT-----GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 290 (488)
+|+.+.+. +.++.....+|.+|++|+.+.+.++... .....+|.++++|+.+.+.++ +.......|.+|++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCcc
Confidence 45555552 2233344455666666776666665443 234456666677777777633 4444455666677777
Q ss_pred EEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCc
Q 041473 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQ 347 (488)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~ 347 (488)
.+.+..+ +......+|.++ +|+.+.+.+|.........+..++..+..+.+..+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 7777543 444455666666 777777777665533334444443333455555543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.1e-15 Score=122.28 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=88.5
Q ss_pred cCCCCCcEEEccCCcCccccchhhhccc-CceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCC
Q 041473 308 GKCKNLILLDLSNNNLTGTIPTEVIGLS-SLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386 (488)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (488)
..+++|+.|++++|.+. .++. +.... .+ ++|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34455555555555555 3332 22333 33 5666666665533 456677888888888888874433445778888
Q ss_pred CEEecCCccccccCcc--cccCCCCCCEEeccCcccCCccch----hhhccccCceeeccCccccccc
Q 041473 387 EQLVMNGNFFQGNIPS--SFSSLRGIQNLDLSRNNLSGRIPK----YFENFFFLQNLNLSSNHFEGEV 448 (488)
Q Consensus 387 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~ 448 (488)
++|++++|.+.. .+. .+..+++|+.|++++|++.. .|. .+..+++|+.|++++|......
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 888888888864 343 67788888888888888873 444 4788888888888888776443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-15 Score=153.83 Aligned_cols=154 Identities=23% Similarity=0.278 Sum_probs=95.9
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~ 357 (488)
..+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++ .+|..+..++.+ ++|++++|.+. .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL-RVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC-CEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC-CEEeCcCCcCC-ccChhhc
Confidence 33455666777777777777766 45555556777777777777777 667667666666 67777777777 5577777
Q ss_pred CCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCC-CCCEEeccCcccCCccchhhhccccCce
Q 041473 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR-GIQNLDLSRNNLSGRIPKYFENFFFLQN 436 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 436 (488)
.+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+....+..+..+. .+..+++++|.+++.+|. .|+.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 7777888888877776 6677777777888888888877766666654432 222466777777766653 3455
Q ss_pred eeccCc
Q 041473 437 LNLSSN 442 (488)
Q Consensus 437 L~l~~n 442 (488)
|++++|
T Consensus 364 l~l~~n 369 (727)
T 4b8c_D 364 IEINTD 369 (727)
T ss_dssp ------
T ss_pred eEeecc
Confidence 556555
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-14 Score=115.67 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=96.2
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 57899999998 4555543 78999999999999777888999999999999999999877888899999999999999
Q ss_pred ccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
++++..+..|..+++|++|++++|++.+.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 999777778999999999999999999887643
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=118.19 Aligned_cols=134 Identities=18% Similarity=0.118 Sum_probs=94.3
Q ss_pred cccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCC
Q 041473 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSL 90 (488)
Q Consensus 11 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 90 (488)
.+..+++|++|++++|.++. ++......++|++|++++|.+... ..|..+++|++|++++|.++...+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45677888888888888873 444333334888888888887754 467788888888888888874444445778888
Q ss_pred cEEecccCCcCCCCCc-chhccCCCCcEEEcCCCcccccCCcc----ccCCCCCceeecccCCC
Q 041473 91 SLLDFPVNQLQGSLPS-DIGFTLPNLEVLNFGNNQFTGPIPAS----ISNASNLMRLTIQKNGF 149 (488)
Q Consensus 91 ~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~ 149 (488)
++|++++|.+. .+|. ..+..+++|+.|++++|.+. ..+.. +..+++|+.|+++++..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888876 6665 12336778888888888776 44543 66677777777776654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=121.87 Aligned_cols=331 Identities=12% Similarity=0.101 Sum_probs=152.5
Q ss_pred CcCccccCCc-ccccccccccccccccchhhcCCCCccEEEeeccc---cccccchhhhccCCCcEEecccCCcCCCCCc
Q 041473 31 EIPSSFGNLS-SLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK---LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPS 106 (488)
Q Consensus 31 ~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 106 (488)
+...+|.++. .|+.+.+... ++.+...+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ ++ .++.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehh
Confidence 3345566663 4666666533 454556667777777777766542 44344556666666766666543 33 4455
Q ss_pred chhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhh
Q 041473 107 DIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186 (488)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (488)
..+..+.+|+.+.+..+ +.......|..+..|+.+.+..+-.......+. ...|+.+.+...... .....+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~~~-------i~~~af 201 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKVTR-------IGTNAF 201 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTCCE-------ECTTTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccceeeEecccccc-ccceeEEEECCcccc-------cccchh
Confidence 55556677777777543 222444556666777777665442211111122 234555544322110 000111
Q ss_pred ccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCcc
Q 041473 187 VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266 (488)
Q Consensus 187 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 266 (488)
..+..++........... ....+ ...+.........+.....+.
T Consensus 202 ~~c~~l~~~~~~~~~~~~--------------------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T 4gt6_A 202 SECFALSTITSDSESYPA--------------------------IDNVL----------YEKSANGDYALIRYPSQREDP 245 (394)
T ss_dssp TTCTTCCEEEECCSSSCB--------------------------SSSCE----------EEECTTSCEEEEECCTTCCCS
T ss_pred hhccccceeccccccccc--------------------------cccee----------ecccccccccccccccccccc
Confidence 122222222222111100 00000 000000000000111112233
Q ss_pred EEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCC
Q 041473 267 RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN 346 (488)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~ 346 (488)
.+.+... +.......|.+++.|+.+.+..+... ....+|..+++|+.+.+... ++ .
T Consensus 246 ~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~-------------------- 301 (394)
T 4gt6_A 246 AFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-E-------------------- 301 (394)
T ss_dssp EEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-E--------------------
T ss_pred eEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-cc-c--------------------
Confidence 3333322 22233345666666666666544322 44556666777776665321 11 1
Q ss_pred cccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccch
Q 041473 347 QLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426 (488)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 426 (488)
....+|..+.+|+.+++..+ ++.....+|.+|++|+++.+..+ ++.+...+|.+|.+|+.+++.++... ..
T Consensus 302 ----I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~ 372 (394)
T 4gt6_A 302 ----LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WN 372 (394)
T ss_dssp ----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HH
T ss_pred ----cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hh
Confidence 12234555566666666543 33344456666677777776543 55556666777777777777665432 13
Q ss_pred hhhccccCceeeccCc
Q 041473 427 YFENFFFLQNLNLSSN 442 (488)
Q Consensus 427 ~l~~l~~L~~L~l~~n 442 (488)
.+..+..|+.+.+..+
T Consensus 373 ~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCBCCCCC--------
T ss_pred hhhccCCCCEEEeCCC
Confidence 4555666666666544
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=114.77 Aligned_cols=108 Identities=24% Similarity=0.301 Sum_probs=87.0
Q ss_pred CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
..+.++++++.++ .+|..+. ..+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l-~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTT-QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCC-cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578888888887 6776553 334 78899999888777888888889999999999888665666788889999999
Q ss_pred CCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
++|+++...+..|..+++|+.|++++|++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99988877777788889999999999988744
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=114.15 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=96.0
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|+++...+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999987 5565553 78999999999999777888999999999999999999777777899999999999999
Q ss_pred ccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+++...+..|..+++|+.|++++|++.+.++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHH
Confidence 99977777799999999999999999987764433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-12 Score=119.02 Aligned_cols=334 Identities=10% Similarity=0.069 Sum_probs=197.9
Q ss_pred cccccchhhcCCC-CccEEEeeccccccccchhhhccCCCcEEecccCC---cCCCCCcchhccCCCCcEEEcCCCcccc
Q 041473 52 FVGQIPETLSELK-RMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQ---LQGSLPSDIGFTLPNLEVLNFGNNQFTG 127 (488)
Q Consensus 52 ~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (488)
.+.+...+|.+++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++ .+....+..+.+|+.+.+..+ +..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 4556677898885 5999999875 565778899999999999998753 55 666777778899998888654 443
Q ss_pred cCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCc
Q 041473 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207 (488)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 207 (488)
.....|..+.+|+.+.+..+........+..+..|+.+.+..+. . .+ ..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~--------------------~I----------~~ 176 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T--------------------AI----------EE 176 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C--------------------EE----------CT
T ss_pred ehhhhhhhhcccccccccceeeeecccceeccccccccccccee-e--------------------Ee----------cc
Confidence 55677889999999999754333222335556666666554221 0 00 00
Q ss_pred hhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCc
Q 041473 208 ESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLT 287 (488)
Q Consensus 208 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 287 (488)
..+. . ..|+++.+.... .......+..+..++................+........-. ..+....
T Consensus 177 ~aF~-~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 242 (394)
T 4gt6_A 177 RAFT-G-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQR 242 (394)
T ss_dssp TTTT-T-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTC
T ss_pred cccc-c-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccc-----------ccccccc
Confidence 0011 1 245555554332 122334455566666655544332211111111100000000 0011122
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEc
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDV 367 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 367 (488)
.+..+.+.. .+......+|..|..|+.+.+... ... ....+|..++.|+.+.+
T Consensus 243 ~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-------------------------~~~-I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-------------------------VVS-IGTGAFMNCPALQDIEF 295 (394)
T ss_dssp CCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-------------------------CCE-ECTTTTTTCTTCCEEEC
T ss_pred ccceEEcCC-cceEcccceeeecccccEEecccc-------------------------cce-ecCcccccccccccccC
Confidence 333333322 122233445556666665554322 111 34456778889999999
Q ss_pred cCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc
Q 041473 368 SENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 368 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
.. .++.....+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.|..+ ++.....+|.+|.+|+.+++.++....
T Consensus 296 ~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~- 371 (394)
T 4gt6_A 296 SS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW- 371 (394)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-
T ss_pred CC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-
Confidence 64 455455678999999999999865 66678899999999999999765 666788999999999999999886432
Q ss_pred cCCccccCCcceeeecCC
Q 041473 448 VPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 448 ~~~~~~~~~L~~l~l~~n 465 (488)
........|+.+.+..+
T Consensus 372 -~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 372 -NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -HTCBCCCCC--------
T ss_pred -hhhhccCCCCEEEeCCC
Confidence 22333455666655443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-16 Score=131.28 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=74.9
Q ss_pred cccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCC
Q 041473 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 385 (488)
Q Consensus 306 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 385 (488)
.+..+++|++|++++|.+. .+| .+..++.+ ++|++++|.+. .+|..+..+++|++|++++|.++ .+| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCC
Confidence 4555555555555555555 244 44444444 55555555555 34444444566666666666666 333 4556666
Q ss_pred CCEEecCCccccccCc-ccccCCCCCCEEeccCcccCCccch----------hhhccccCceeeccCcccc
Q 041473 386 LEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRIPK----------YFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 386 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~~~ 445 (488)
|+.|++++|.+..... ..+..+++|++|++++|++.+..|. .+..+++|+.|| +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666666664222 3556666677777777766544332 256666666665 55554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=112.99 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=86.2
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecC
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 392 (488)
-+.++++++.+. .+|..+. ..+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDK-QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCC-cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888886 7776553 334 789999999887778888888999999999999885545567888999999999
Q ss_pred CccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
+|.+....+..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9998876667788889999999999988743
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-16 Score=131.95 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=107.0
Q ss_pred ccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCccccc
Q 041473 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFS 405 (488)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 405 (488)
.+|..+..++.+ ++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. .+ .+.
T Consensus 39 ~l~~~~~~l~~L-~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 39 KMDATLSTLKAC-KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCHHHHHHTTTC-SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred hhhHHHhcCCCC-CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 344477777777 899999999885 55 7888899999999999998 778777778999999999999885 33 577
Q ss_pred CCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccccCC-----------ccccCCcceeeecCCC
Q 041473 406 SLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVPI-----------KGVFSNSSAISLDGND 466 (488)
Q Consensus 406 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-----------~~~~~~L~~l~l~~n~ 466 (488)
.+++|+.|++++|+++...+ ..+..+++|++|++++|++.+.+|. ...+++|+.|+ +|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 88999999999999885433 5788899999999999999877665 45667777765 454
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-13 Score=127.69 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccC----cccccCCCCCCEEeccCcccCCc----cchh
Q 041473 360 KNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNI----PSSFSSLRGIQNLDLSRNNLSGR----IPKY 427 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~ 427 (488)
+.|++|++++|.++.. ++..+..+++|++|++++|.+++.. ...+..+++|+.|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4566666666655421 2223344556666666666555322 33444455666666666665533 2233
Q ss_pred hhccccCceeeccCcccc
Q 041473 428 FENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 428 l~~l~~L~~L~l~~n~~~ 445 (488)
+..+++|++|++++|+++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 344456666666666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-12 Score=117.21 Aligned_cols=141 Identities=19% Similarity=0.214 Sum_probs=84.0
Q ss_pred EEEccCC-cccccCCccccCCCCccEEEccC-CcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 340 YLDLSKN-QLNGPLPSNFGILKNLGVLDVSE-NKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 340 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
.++++++ .+. .+|. +..+++|++|+|++ |.+....+..|.++++|++|+|++|+++...+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3455 66666777777775 677655556677777777777777777766666777777777777777
Q ss_pred cccCCccchhhhccccCceeeccCcccccccCCcccc--CCcceeeecCCCCcccc---ccccccCcchhh
Q 041473 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVF--SNSSAISLDGNDNLCGG---ISELHLSTCSIK 483 (488)
Q Consensus 418 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~~L~~l~l~~n~~~c~~---~~~l~~~~c~~~ 483 (488)
|+++...+..|..++ |+.|++.+|++.+.+...+.. .......+..+...|.. +..+++..|..+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~c~~P 159 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVP 159 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTTCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCcccCCCC
Confidence 777755555555544 777777777777655532221 11122333444455543 445555556433
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.8e-10 Score=104.95 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=55.3
Q ss_pred CCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhcc
Q 041473 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431 (488)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 431 (488)
...+|..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.++
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 3446667777777777777776555667777788888887654 55566777888888888877654 554556677665
Q ss_pred ccC
Q 041473 432 FFL 434 (488)
Q Consensus 432 ~~L 434 (488)
+.+
T Consensus 356 ~~~ 358 (379)
T 4h09_A 356 SIT 358 (379)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=115.81 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=94.1
Q ss_pred cEEEccCC-cccCCCccccccCCCCCEEecCC-ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 363 GVLDVSEN-KLSGEIPNSLGSCVRLEQLVMNG-NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 363 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
..++++++ .++ .+|. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788988 888 7888 99999999999996 99998888999999999999999999998889999999999999999
Q ss_pred CcccccccCCccccCCcceeeecCCCCcccc
Q 041473 441 SNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 441 ~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+|.+++..+.......|+.|++.+|++.|++
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999965554333334999999999999975
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-13 Score=124.17 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=107.0
Q ss_pred CCCcEEEccCCcCccccchhhhcc----cCceeEEEccCCcccccCCcc-ccCCCCccEEEccCCcccCCCcccc-----
Q 041473 311 KNLILLDLSNNNLTGTIPTEVIGL----SSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSL----- 380 (488)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~----~~l~~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~----- 380 (488)
+.|+.|++++|.++......+... ...+++|++++|.+....... ...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445566666665543222222211 122366666666654322222 2234678999999998875444333
Q ss_pred ccCCCCCEEecCCccccccC----cccccCCCCCCEEeccCcccCCcc----chhhhccccCceeeccCccccccc----
Q 041473 381 GSCVRLEQLVMNGNFFQGNI----PSSFSSLRGIQNLDLSRNNLSGRI----PKYFENFFFLQNLNLSSNHFEGEV---- 448 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~---- 448 (488)
...++|++|++++|.+++.. ...+..+++|++|+|++|.+.... +..+...++|++|++++|.++..-
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 34689999999999997533 344577899999999999988543 566778889999999999997421
Q ss_pred -CCccccCCcceeeecCCCCcccc
Q 041473 449 -PIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 449 -~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
......++|+.|++++|+..-.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHH
Confidence 12334688999999999876433
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-09 Score=100.84 Aligned_cols=319 Identities=10% Similarity=0.021 Sum_probs=161.4
Q ss_pred cccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCC
Q 041473 35 SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPN 114 (488)
Q Consensus 35 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 114 (488)
++....+|+.+.+. ..++.+...+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +. .+....+. ..+
T Consensus 41 ~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTD 114 (379)
T ss_dssp TGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCC
T ss_pred ccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCC
Confidence 45666778888876 3466677778888888888888754 554566677776 6777766543 44 55555553 347
Q ss_pred CcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccE
Q 041473 115 LEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194 (488)
Q Consensus 115 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 194 (488)
|+.+.+..+- .......|.+. .++.+.+..+-.......+..+..++.+.+........... ...
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~-------~~~------ 179 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAEN-------YVL------ 179 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEET-------TEE------
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeeccc-------cee------
Confidence 8888886542 22333344433 56666655432222223355556666655443221100000 000
Q ss_pred EecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccccc
Q 041473 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK 274 (488)
Q Consensus 195 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 274 (488)
.. .. ......+..+..+..+.+..... ......+....+++.+.+..+
T Consensus 180 --~~-----------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~- 227 (379)
T 4h09_A 180 --YN-----------------KN-----------KTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG- 227 (379)
T ss_dssp --EE-----------------TT-----------SSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-
T ss_pred --cc-----------------cc-----------cceecccccccccccccccccee-EEeecccccccccceeeeccc-
Confidence 00 00 00000111122222222222111 111222333344444444332
Q ss_pred ccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCc
Q 041473 275 FLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~ 354 (488)
+.......+..+..|+.+.+..+ +......+|..+.+|+.+.+..+ +...-...+..+..+ +.+.+.++.+..+...
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L-~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL-TKVVMDNSAIETLEPR 304 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC-CEEEECCTTCCEECTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc-ccccccccccceehhh
Confidence 11122233444444444444332 22233334444555555554432 221112223333333 4555555555445556
Q ss_pred cccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCC
Q 041473 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 411 (488)
+|..+.+|+.+++..+ ++.....+|.+|++|+++.+..+ ++.+...+|.++..++
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 7888888888888754 55455678889999999998765 6667778888875443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=98.85 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=44.0
Q ss_pred CCCccEEEccCCcccCCCccccc---cCCCCCEEecCCccccccCccc----ccCCCCCCEEeccCcccCCccchhhhc-
Q 041473 359 LKNLGVLDVSENKLSGEIPNSLG---SCVRLEQLVMNGNFFQGNIPSS----FSSLRGIQNLDLSRNNLSGRIPKYFEN- 430 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~- 430 (488)
+++|++|++.+|.+....+..+. .+++|++|+++.|.+.+.+... +..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56677777766665532222221 3566667777666665433222 233466666666666665444433332
Q ss_pred cccCceeeccCcc
Q 041473 431 FFFLQNLNLSSNH 443 (488)
Q Consensus 431 l~~L~~L~l~~n~ 443 (488)
+ ...++++++.
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2445665554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-09 Score=99.40 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=57.1
Q ss_pred cCCCCCEEecCCccccccCccccc---CCCCCCEEeccCcccCCcc----chhhhccccCceeeccCcccccccCCcccc
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFS---SLRGIQNLDLSRNNLSGRI----PKYFENFFFLQNLNLSSNHFEGEVPIKGVF 454 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 454 (488)
.+++|+.|++.+|.+.+.....+. .+++|+.|+|+.|.+.... +..+..+++|+.|++++|.++... ...+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~--~~~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM--KKEL 327 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH--HHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH--HHHH
Confidence 478999999999988754433332 4789999999999888653 344466799999999999876421 1112
Q ss_pred CC--cceeeecCCC
Q 041473 455 SN--SSAISLDGND 466 (488)
Q Consensus 455 ~~--L~~l~l~~n~ 466 (488)
.. ..+++++++.
T Consensus 328 ~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHCCSEEECCSBC
T ss_pred HHHcCCEEEecCCc
Confidence 21 2456776664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-09 Score=83.81 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=58.8
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCcc-ccccCcccccCC----CCCCEEeccCcc-cCCccchhhhcccc
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSL----RGIQNLDLSRNN-LSGRIPKYFENFFF 433 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~ 433 (488)
..|+.||+++|.++......+..+++|++|++++|. +++..-..+..+ ++|++|+|++|. ++......+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777776666666777777777777774 665555555543 467777777774 66665666677777
Q ss_pred CceeeccCccc
Q 041473 434 LQNLNLSSNHF 444 (488)
Q Consensus 434 L~~L~l~~n~~ 444 (488)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 77777777753
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.4e-08 Score=78.63 Aligned_cols=94 Identities=7% Similarity=0.046 Sum_probs=74.0
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc-cCCccchhhhc----cccCceeeccCcc-cccc-cC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFEN----FFFLQNLNLSSNH-FEGE-VP 449 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~----l~~L~~L~l~~n~-~~~~-~~ 449 (488)
|........|++|++++|.+++.+-..+.+|++|++|+|++|. ++......+.. +++|++|+|++|+ ++.. +.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333334689999999999998888888999999999999995 77666666765 3589999999996 6532 44
Q ss_pred CccccCCcceeeecCCCCccc
Q 041473 450 IKGVFSNSSAISLDGNDNLCG 470 (488)
Q Consensus 450 ~~~~~~~L~~l~l~~n~~~c~ 470 (488)
....+++|+.|++++||..-+
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 556689999999999986544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.8e-08 Score=82.32 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=51.5
Q ss_pred eEEEccCC-ccccc----CCccccCCCCccEEEccCCcccCCC----ccccccCCCCCEEecCCccccccC----ccccc
Q 041473 339 IYLDLSKN-QLNGP----LPSNFGILKNLGVLDVSENKLSGEI----PNSLGSCVRLEQLVMNGNFFQGNI----PSSFS 405 (488)
Q Consensus 339 ~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~ 405 (488)
++|++++| .+... +...+...+.|++|+|++|.+.... ...+...++|++|++++|.+.+.+ ..++.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 55666655 54421 1223334455566666665554321 223334455566666665555422 23344
Q ss_pred CCCCCCEEec--cCcccCCc----cchhhhccccCceeeccCcccc
Q 041473 406 SLRGIQNLDL--SRNNLSGR----IPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 406 ~l~~L~~L~l--~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
..++|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455555555 55555533 2233344455555555555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-08 Score=82.14 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=39.3
Q ss_pred cCCCCccEEEccCC-cccCC----CccccccCCCCCEEecCCccccccCc----ccccCCCCCCEEeccCcccCCc----
Q 041473 357 GILKNLGVLDVSEN-KLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIP----SSFSSLRGIQNLDLSRNNLSGR---- 423 (488)
Q Consensus 357 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~---- 423 (488)
...+.|++|++++| .+... +...+...++|++|++++|.+.+.+. ..+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33445555555555 44321 12233344455555555555543221 2222334555555555554432
Q ss_pred cchhhhccccCceeec--cCcccc
Q 041473 424 IPKYFENFFFLQNLNL--SSNHFE 445 (488)
Q Consensus 424 ~~~~l~~l~~L~~L~l--~~n~~~ 445 (488)
+.+.+...++|++|++ ++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 2233344445555555 445444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=82.33 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=32.2
Q ss_pred cCCCCCEEecCCccccc--cCcccccCCCCCCEEeccCcccCCccchhhhccc--cCceeeccCccccccc
Q 041473 382 SCVRLEQLVMNGNFFQG--NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF--FLQNLNLSSNHFEGEV 448 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~ 448 (488)
++++|+.|++++|.++. ..+..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 34555555555555553 2223444555555555555555533 1122222 5556666666655433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-06 Score=75.81 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=60.5
Q ss_pred cCCCCccEEEccCCcccC--CCccccccCCCCCEEecCCccccccCcccccCCC--CCCEEeccCcccCCccc-------
Q 041473 357 GILKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR--GIQNLDLSRNNLSGRIP------- 425 (488)
Q Consensus 357 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~------- 425 (488)
..+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456789999999998885 3345667889999999999998854 2333333 89999999999886544
Q ss_pred hhhhccccCceee
Q 041473 426 KYFENFFFLQNLN 438 (488)
Q Consensus 426 ~~l~~l~~L~~L~ 438 (488)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467888888876
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=2.8e-05 Score=64.39 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=57.6
Q ss_pred eEEEccCC-ccccc----CCccccCCCCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccCc----cccc
Q 041473 339 IYLDLSKN-QLNGP----LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIP----SSFS 405 (488)
Q Consensus 339 ~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~ 405 (488)
++|+++++ .+... +.+.+..-+.|+.|+|++|.+.+. +.+++...+.|++|+|++|.|.+.+. +++.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 66777664 54421 223444456677777777766532 23344456677777777777665333 2333
Q ss_pred CCCCCCEEeccCcc---cCC----ccchhhhccccCceeeccCcc
Q 041473 406 SLRGIQNLDLSRNN---LSG----RIPKYFENFFFLQNLNLSSNH 443 (488)
Q Consensus 406 ~l~~L~~L~l~~n~---~~~----~~~~~l~~l~~L~~L~l~~n~ 443 (488)
.-+.|++|+|++|. +.. .+.+.+..-+.|+.|+++.|.
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 44567777776542 221 133445555666666666554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=60.63 Aligned_cols=83 Identities=7% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCccEEEccCC-cccC----CCccccccCCCCCEEecCCccccccCccc----ccCCCCCCEEeccCcccCCcc----ch
Q 041473 360 KNLGVLDVSEN-KLSG----EIPNSLGSCVRLEQLVMNGNFFQGNIPSS----FSSLRGIQNLDLSRNNLSGRI----PK 426 (488)
Q Consensus 360 ~~L~~L~l~~n-~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~~----~~ 426 (488)
+.|++|+|+++ .+.. .+.+++...+.|++|+|++|++.+.+..+ +..-+.|+.|+|++|.+.... .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555543 4432 12233444455555555555554432222 222345555555555554332 22
Q ss_pred hhhccccCceeeccCc
Q 041473 427 YFENFFFLQNLNLSSN 442 (488)
Q Consensus 427 ~l~~l~~L~~L~l~~n 442 (488)
++..-+.|++|++++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3333344555555443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00037 Score=53.81 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=30.3
Q ss_pred EEEccCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 364 VLDVSENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 364 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
.++.+++.++ ..+|..+ .++|++|+|++|.++.+.+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555555554 2444333 235666666666665555555555555555555555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0015 Score=50.45 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=42.8
Q ss_pred EEecCCcccc-ccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcc
Q 041473 388 QLVMNGNFFQ-GNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 388 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 452 (488)
.++.++++++ ..+|..+. ++|+.|+|++|+++...+..|..+++|+.|+|.+|++.+.+...+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHH
Confidence 6666777665 13333222 467888888888886666777778888888888888877666433
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=89.22 E-value=0.76 Score=33.02 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=28.5
Q ss_pred cccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 371 KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
.++.....+|.+|++|+++.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444444556666667776666654 33355666666666666666553
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=88.94 E-value=0.48 Score=34.10 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=26.3
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
.++.+...+|.+|.+|+.+.|-.+ ++.....+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444455556666666666666553 33355556666666666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 488 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-23 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.003 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-20 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-11 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 6e-10 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 4e-07 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 4e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 4e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 6e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.003 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 100 bits (249), Expect = 1e-23
Identities = 79/380 (20%), Positives = 135/380 (35%), Gaps = 33/380 (8%)
Query: 71 FGANKLSGEIPFS-IYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI 129
G ++ + + + +++L + + G + + L NL +NF NNQ T
Sbjct: 29 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEY-LNNLTQINFSNNQLTDIT 82
Query: 130 PASISNASNLMRLTIQKNGFSGKVPS-------LENLYKLQRVSFSLNHLGNGEKDDLEF 182
P + N + L+ + + N + P L+ Q
Sbjct: 83 P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 183 VSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLE 242
+++ + S L + G + L+ + + + S L L NLE
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200
Query: 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302
L +NQ + +G L L L L GN+ ++ +LT L L N++
Sbjct: 201 SLIATNNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256
Query: 303 IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362
P L L L L N ++ P L+ L+ +L N+ S LKNL
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422
L + N +S P + S +L++L N SS ++L I L N +S
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365
Query: 423 RIPKYFENFFFLQNLNLSSN 442
P N + L L+
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 78.1 bits (191), Expect = 3e-16
Identities = 76/380 (20%), Positives = 131/380 (34%), Gaps = 39/380 (10%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
L ++ TL + L++L ++ + NQ P L L ++ I N
Sbjct: 43 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
+++ P + + L + I +
Sbjct: 99 QIADITPLANLTNLTGLTLFNNQIT---------DIDPLKNLTNLNRLELSSNTISDISA 149
Query: 135 NASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194
+ + + L NL L+R+ S N + + + LE
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--------KLTNLES 201
Query: 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR 254
+ + N + P + T L ++ NQL L +L NL LDL +NQ +
Sbjct: 202 LIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN- 255
Query: 255 ILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314
L + L KL L+L N+ P + L + E N + S + KNL
Sbjct: 256 -LAPLSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLT 310
Query: 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374
L L NN++ P L+ L L + N+++ S+ L N+ L N++S
Sbjct: 311 YLTLYFNNISDISPVS--SLTKLQ-RLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365
Query: 375 EIPNSLGSCVRLEQLVMNGN 394
P L + R+ QL +N
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 75.8 bits (185), Expect = 2e-15
Identities = 69/346 (19%), Positives = 118/346 (34%), Gaps = 60/346 (17%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE------------- 58
+ L+ L + N L+ P NL+ L + NQ P
Sbjct: 62 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119
Query: 59 -----------------------TLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95
T+S++ + + G + L++L+ L+
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179
Query: 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS 155
+ L NLE L NNQ + P + +NL L++ N + +
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT 236
Query: 156 LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLST 215
L +L L + + N + N ++ L ++L +++ N + P + L+
Sbjct: 237 LASLTNLTDLDLANNQISN--------LAPLSGLTKLTELKLGANQISNISP--LAGLTA 286
Query: 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKF 275
N + S NL NL L L N + + + L KLQRL NK
Sbjct: 287 LTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKV 341
Query: 276 LGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN 321
SS+ NLT + LS N++ P L + L L++
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 52.7 bits (125), Expect = 4e-08
Identities = 48/255 (18%), Positives = 91/255 (35%), Gaps = 22/255 (8%)
Query: 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK 274
++ + G+ L NL ++ +NQ T + + +L KL + + N+
Sbjct: 44 DQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQ 99
Query: 275 FLGEIPSSVGNLTLLFTLSFEGNRLEGSIP------------SSLGKCKNLILLDLSNNN 322
P + TL + +++ L L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159
Query: 323 LTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 382
G T++ L++L+ L + S L NL L + N++S P +
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI-- 217
Query: 383 CVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
L++L +NGN + + +SL + +LDL+ N +S P L L L +N
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273
Query: 443 HFEGEVPIKGVFSNS 457
P+ G+ + +
Sbjct: 274 QISNISPLAGLTALT 288
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L N +S SS NL+++ +LSA NQ P L
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369
Query: 61 SELKRMRSIGFGAN 74
+ L R+ +G
Sbjct: 370 ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 38.8 bits (89), Expect = 0.001
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 311 KNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSEN 370
+ L N+T T+ L ++ L + + L NL ++ S N
Sbjct: 22 AEKMKTVLGKTNVTDTVSQT--DLDQVT-TLQADRLGIKSI--DGVEYLNNLTQINFSNN 76
Query: 371 KLSGEIPNSLGSCVRLEQLVMNGNFFQ 397
+L+ P L + +L ++MN N
Sbjct: 77 QLTDITP--LKNLTKLVDILMNNNQIA 101
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 261 DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320
L + + L + + +L + TL + ++ SI + NL ++ SN
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75
Query: 321 NNLTGTIP 328
N LT P
Sbjct: 76 NQLTDITP 83
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.8 bits (221), Expect = 2e-20
Identities = 68/274 (24%), Positives = 101/274 (36%), Gaps = 9/274 (3%)
Query: 211 GNLSTRLKRFTVGNNQLFGN--IPSGLGNLVNLELLDLGDN-QFTGRILGSIGDLQKLQR 267
+ R+ + L IPS L NL L L +G G I +I L +L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 268 LRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTI 327
L + G IP + + L TL F N L G++P S+ NL+ + N ++G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 328 PTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387
P S L + +S+N+L G +P F L V +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 388 QLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447
+ + S LDL N + G +P+ FL +LN+S N+ GE
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNL--NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 448 VPIKGVFSNSSAISLDGNDNLCGGISELHLSTCS 481
+P G + N LCG L C+
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGS----PLPACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 73.6 bits (179), Expect = 5e-15
Identities = 78/272 (28%), Positives = 113/272 (41%), Gaps = 14/272 (5%)
Query: 13 GSLSKLRTLAVHFNNLSG--EIPSSFGNLSSLEFLS-AAVNQFVGQIPETLSELKRMRSI 69
++ L + NL IPSS NL L FL +N VG IP +++L ++ +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 70 GFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI 129
+SG IP + + +L LDF N L G+LP I +LPNL + F N+ +G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAI 165
Query: 130 PASISNASNLMR-LTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVN 188
P S + S L +TI +N +GK+P L V S N L
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS------ 219
Query: 189 ASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGD 248
+I + LS L + NN+++G +P GL L L L++
Sbjct: 220 --DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP 280
N G I G+LQ+ NK L P
Sbjct: 278 NNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 68.2 bits (165), Expect = 3e-13
Identities = 62/282 (21%), Positives = 102/282 (36%), Gaps = 18/282 (6%)
Query: 107 DIGFTLPNLEVLNFGNNQFTG--PIPASISNASNL--MRLTIQKNGFSGKVPSLENLYKL 162
D + L+ PIP+S++N L + + N P++ L +L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 163 QRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTV 222
+ + ++ D L + L ++ S N G LP S+ + L T
Sbjct: 104 HYLYITHTNVSGAIPDFLSQI------KTLVTLDFSYNALSGTLPPSISS-LPNLVGITF 156
Query: 223 GNNQLFGNIPSGLGNLVNLEL-LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPS 281
N++ G IP G+ L + + N+ TG+I + +L +
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341
+ +G KNL LDL NN + GT+P + L L L
Sbjct: 217 FGSDKN--TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-SL 273
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSC 383
++S N L G +P G L+ V + NK P L +C
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP--LPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 62.8 bits (151), Expect = 2e-11
Identities = 65/256 (25%), Positives = 90/256 (35%), Gaps = 23/256 (8%)
Query: 168 SLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL 227
+L+ G SSL N L + I N T+L + + +
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 228 FGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN-L 286
G IP L + L LD N +G + SI L L + GN+ G IP S G+
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 287 TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN---------------------NNLTG 325
L +++ NRL G IP + + N +
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 385
+GLS LDL N++ G LP LK L L+VS N L GEIP G+ R
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQR 292
Query: 386 LEQLVMNGNFFQGNIP 401
+ N P
Sbjct: 293 FDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 61/298 (20%), Positives = 97/298 (32%), Gaps = 37/298 (12%)
Query: 61 SELKRMRSIGFGANKLSG--EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118
++ R+ ++ L IP S+ NL L+ L L L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKD 178
+ +G IP +S L+ L N SG +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP------------------------ 142
Query: 179 DLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNL 238
S+ + L + N G +P+S G+ S T+ N+L G IP NL
Sbjct: 143 -----PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298
+ + + D + K + + L NR
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR--NNR 255
Query: 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQL--NGPLPS 354
+ G++P L + K L L++S NNL G IP + L + N+ PLP+
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD-VSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIP 57
N + G +P L L L +L V FNNL GEIP GNL + + A N+ + P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 305 SSLGKCKNLILLDLSNNNLTG--TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362
+ + + LDLS NL IP+ + L L+ N L GP+P L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 363 GVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422
L ++ +SG IP+ L L L + N G +P S SSL + + N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 423 RIPKYFENFFFLQN 436
IP + +F L
Sbjct: 164 AIPDSYGSFSKLFT 177
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.6 bits (215), Expect = 6e-20
Identities = 50/272 (18%), Positives = 85/272 (31%), Gaps = 13/272 (4%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKL 162
++P I + + N+ + AS NL L + N + + L
Sbjct: 25 AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 163 QRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTV 222
++ D F RL + + L + L+ +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFH----GLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYL 136
Query: 223 GNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS 282
+N L +L NL L L N+ + + L L RL L N+ P +
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 283 VGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342
+L L TL N L +L + L L L++N L +
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFR 254
Query: 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374
S +++ LP L + ++ N L G
Sbjct: 255 GSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.7 bits (192), Expect = 7e-17
Identities = 53/247 (21%), Positives = 88/247 (35%), Gaps = 4/247 (1%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290
+P G+ + + L N+ + S + L L L N ++ L LL
Sbjct: 26 VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 291 TLSFEGNRLEGSI-PSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L N S+ P++ L L L L P GL++L L N L
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQ 142
Query: 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409
F L NL L + N++S + L++L+++ N P +F L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLC 469
+ L L NNLS + LQ L L+ N + + + +++ ++ C
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262
Query: 470 GGISELH 476
L
Sbjct: 263 SLPQRLA 269
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 4e-11
Identities = 44/285 (15%), Positives = 81/285 (28%), Gaps = 36/285 (12%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
+ + +H N +S +SF +L L N + L + + N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 78 GEI-PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136
+ P + + L L L L + L L+ L +N + +
Sbjct: 94 RSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 137 SNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMME 196
NL L + N S + L+ +
Sbjct: 153 GNLTHLFLHGNRISSVPE-----------------------------RAFRGLHSLDRLL 183
Query: 197 ISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256
+ N + P + +L + + NN + L L+ L L DN +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWVCDC- 241
Query: 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301
+ LQ+ R ++ +P + L N L+G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 1e-08
Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 5/151 (3%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N L L L L +H N +S +F L SL+ L N+ P
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
+L R+ ++ AN LS ++ L +L L N L+
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRG 255
Query: 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSG 151
+++ +P + + + N G
Sbjct: 256 SSSEVPCSLPQRL---AGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 1/164 (0%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
P L +L TL + L P F L++L++L N +T +L +
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP 128
+ N++S + L SL L N++ P L L L N +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSAL 216
Query: 129 IPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHL 172
+++ L L + N + + LQ+ S + +
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.0 bits (201), Expect = 6e-18
Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 6/235 (2%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+L + NN++ NL NL L L +N+ + G+ L KL+RL L
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV 331
N+ L L E ++ S+ + L + + L + +G
Sbjct: 88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAF 146
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
G+ LS ++ + G+ +L L + NK++ SL L +L +
Sbjct: 147 QGMKKLSYI-RIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446
+ N S ++ ++ L L+ N L ++P + ++Q + L +N+
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.1 bits (196), Expect = 3e-17
Identities = 62/292 (21%), Positives = 100/292 (34%), Gaps = 24/292 (8%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYK 161
+P D+ P+ +L+ NN+ T N NL L + N S P + L K
Sbjct: 24 KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80
Query: 162 LQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221
L+R+ S N L + + + L E+ ++ + F G+ V L T
Sbjct: 81 LERLYLSKNQLKELPEKMPKTLQELRV-HENEITKVRKSVFNGLNQMIVVELGTN----- 134
Query: 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPS 281
+ G + L + + D T G L L L GNK +
Sbjct: 135 --PLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAA 189
Query: 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341
S+ L L L N + SL +L L L+NN L +P + + +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ-VV 247
Query: 342 DLSKNQLNG------PLPSNFGILKNLGVLDVSENKLS-GEIPNSLGSCVRL 386
L N ++ P + + + N + EI S CV +
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.2 bits (160), Expect = 1e-12
Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 20/284 (7%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
L + N ++ F NL +L L N+ P + L ++ + N+L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 78 GEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNAS 137
L L + + + +++ S+ + + L + +G +
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 138 NLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197
L + I + L L + N + + SL + L + +
Sbjct: 151 KLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAA------SLKGLNNLAKLGL 202
Query: 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG---- 253
S N+ + + L+ + NN+L +P GL + ++++ L +N +
Sbjct: 203 SFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260
Query: 254 --RILGSIGDLQKLQRLRLKGNK--FLGEIPSSVGNLTLLFTLS 293
G + L N + PS+ + + +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 1e-09
Identities = 48/260 (18%), Positives = 92/260 (35%), Gaps = 22/260 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N++ G +L L TL + N +S P +F L LE L + NQ ++PE +
Sbjct: 40 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKM 98
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFT-LPNLEVLN 119
K ++ + N+++ L+ + +++ N L+ S + F + L +
Sbjct: 99 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156
Query: 120 FGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKD 178
+ T IP + +L L + N + SL+ L L ++ S N + +
Sbjct: 157 IADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213
Query: 179 DLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFG------NIP 232
L L E+ +NN + ++ + NN + P
Sbjct: 214 SLANTPHL--------RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 233 SGLGNLVNLELLDLGDNQFT 252
+ + L N
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.3 bits (129), Expect = 9e-09
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 10/173 (5%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
+ S+ L +P L + LDL N++ +F LKNL L + NK+S
Sbjct: 15 VQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435
P + V+LE+L ++ N + +L+ ++ + + + ++
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 436 NLNLSSNHFEGEVPIKGVFSNSSAISLDGN------DNLCGGISELHLSTCSI 482
E S I + L ++ELHL I
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI 183
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 2e-11
Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 20/209 (9%)
Query: 83 SIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142
+ ++S ++ L +LP D+ + +L+ N A++ + L +L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 143 TI--QKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLE------- 193
+ + +L L L L L + V+ +RL
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 194 ------MMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLG 247
N LP + + +L++ ++ NN L L L NL+ L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 248 DNQFTGRILGSIGDLQKLQRLRLKGNKFL 276
+N I L L GN +L
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 2e-08
Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 12/240 (5%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290
+P L + +L L +N L ++ +L +L L + G L +L
Sbjct: 25 LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLG 80
Query: 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350
TL N+L+ +L N ++P + L L N+L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKT 138
Query: 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGI 410
P L L ++ N L+ L L+ L++ N IP F +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Query: 411 QNLDLSRNNL--SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468
L N + I YF +LQ+ + ++ V +K + SN +++ D +D
Sbjct: 198 PFAFLHGNPWLCNCEI-LYFRR--WLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKF 254
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 6e-07
Identities = 36/186 (19%), Positives = 57/186 (30%), Gaps = 5/186 (2%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271
+L + N L+ + L L L+L + T G L L L L
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLS 85
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEV 331
N+ T+ S+P + + N T+P +
Sbjct: 86 HNQLQSLPLLGQTLPA--LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 332 IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
+ + L L+ N L L+NL L + EN L IP L +
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 392 NGNFFQ 397
+GN +
Sbjct: 203 HGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 53/211 (25%)
Query: 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVL 365
+ K + + ++ NLT +P + L + L LS+N L + L L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 366 DVSENK---------------------------------------------LSGEIPNSL 380
++ + L+ +L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 381 GSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440
L++L + GN + P + ++ L L+ NNL+ L L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 441 SNHFEGEVPIKGVFSNSS--AISLDGNDNLC 469
N +P KG F + L GN LC
Sbjct: 181 ENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.001
Identities = 29/183 (15%), Positives = 47/183 (25%), Gaps = 22/183 (12%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLS-AAVNQFVGQIPETLSELKRM 66
+P L L + N L ++ + L L+ Q+ TL L +
Sbjct: 25 LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82
Query: 67 RSIGFGANKLSG-------------------EIPFSIYNLSSLSLLDFPVNQLQGSLPSD 107
L +P + +LP
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 108 IGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSF 167
+ P LE L+ NN T ++ NL L +Q+N + L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 168 SLN 170
N
Sbjct: 203 HGN 205
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 56.4 bits (134), Expect = 6e-10
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF-GILKNLGVLDVSENKLSG 374
+D + L IP + + L L+ N+L G L +L L++ N+L+G
Sbjct: 13 VDCTGRGLK-EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434
PN+ +++L + N + F L ++ L+L N +S +P FE+ L
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Query: 435 QNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELH 476
+LNL+SN F + SL+G CG S++
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR 170
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 48.3 bits (113), Expect = 4e-07
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 6/171 (3%)
Query: 212 NLSTRLKRFTVGNNQLFGNIPSGL-GNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270
++ + +N+L GL G L +L L+L NQ TG + +Q L+L
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85
Query: 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330
NK L L TL+ N++ +P S +L L+L++N
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-- 143
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381
+ + L+ PS ++++ + D+ ++ NS G
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 32/191 (16%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQK-LQRLRLKGNKFLGEIPSSVGNLTLL 289
IP + + L L DN+ + L +L LK N+ G P++ + +
Sbjct: 23 IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349
L N+++ L L+L +N ++ +P L+SL+ S
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Query: 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409
+ L ++ P S +R
Sbjct: 141 --NCHLAWFAEWLRKKSLNGGAARCGAP---------------------------SKVRD 171
Query: 410 IQNLDLSRNNL 420
+Q DL +
Sbjct: 172 VQIKDLPHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
Query: 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRS 68
L +L+TL ++ N +S +P SF +L+SL + + +R
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL-TSLNLASNPFNCNCHLAWFAEWLRK 153
Query: 69 IGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIG 109
P + + + D P ++ + S + G
Sbjct: 154 KSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 55.2 bits (131), Expect = 7e-09
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS 402
N + + S + +L L+VS NKL E+P RLE+L+ + N +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321
Query: 403 SFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSS 441
+L+ L + N L P E+ +++L ++S
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPES---VEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP 353
+ N I S +L L++SNN L +P L L S N L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLE-RLIASFNHLAE-VP 320
Query: 354 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
+ +NL L V N L E P+ S +E L MN
Sbjct: 321 E---LPQNLKQLHVEYNPLR-EFPDIPES---VEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.7 bits (114), Expect = 9e-07
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
N I S +LE L++ +N+ + +L+RL N L E+P
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNH-LAEVPELP 323
Query: 284 GNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313
NL L E N L P ++L
Sbjct: 324 QNLK---QLHVEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
N S EI SL L+ N+L LP+ P LE L N +P
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLAE-VPELP 323
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQ 163
NL +L ++ N E++ L+
Sbjct: 324 ---QNLKQLHVEYNPLREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 9e-04
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N ++ L L V N L E+P+ LE L A+ N ++PE
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELP 323
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92
LK++ N L E P ++ L +
Sbjct: 324 QNLKQLH---VEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.5 bits (85), Expect = 0.002
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 310 CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369
+ L+L+N L+ ++P L S L S N L LP + ++L L V
Sbjct: 37 DRQAHELELNNLGLS-SLPELPPHLES----LVASCNSLT-ELPE---LPQSLKSLLVDN 87
Query: 370 NKLSG 374
N L
Sbjct: 88 NNLKA 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (123), Expect = 7e-08
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 336 SLSI-YLDLSKNQLN-GPLPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQL 389
SL I LD+ +L+ +L+ V+ + + L+ I ++L L +L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 390 VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428
+ N + + + +L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (116), Expect = 5e-07
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 239 VNLELLDLGDNQFT-GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297
++++ LD+ + + R + LQ+ Q +RL
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD--------------- 46
Query: 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSI---YLDLSKNQ 347
I S+L L L+L +N L V+ GL + S L L
Sbjct: 47 -----ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG----PLPSNFGILKNLGVLDV 367
++ LD+ L+ E++ L + L L + S + L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 368 SENKLSGEIPNSLGS-----CVRLEQLVMNGNFFQ 397
N+L + + ++++L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 340 YLDLSKNQLNG----PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR-----LEQLV 390
L L+ ++ L + +L LD+S N L L VR LEQLV
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
Query: 391 MNGNFFQGNIPSSFSSLR 408
+ ++ + +L
Sbjct: 433 LYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 285 NLTLLFTLSFEGNRLEG----SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGL----SS 336
++L L + S+ ++L +L LDLSNN L +++
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 337 LSIYLDLSKNQLNGPLPSNFGILK 360
L L L + + L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 6e-05
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL----FGNIPSGLGNLVNLELLDLG 247
++ ++I + L + + + + L +I S L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 248 DNQFTGRILGSIGDLQKLQRLRLK 271
N+ + + + +++
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQ 87
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 7e-05
Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 208 ESVGNLSTRLKRFTVGNNQL----FGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ 263
+ +G + L+ + + + ++ + L +L LDL +N + + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 264 K-----LQRLRLKGNKFLGEIPSSVGNL 286
+ L++L L + E+ + L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 86 NLSSLSLLDFPVNQLQGSLPSDIGFTL---PNLEVLNFGNNQFTGPIPASISNA-----S 137
S L +L + S S + TL +L L+ NN + +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 138 NLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHL 172
L +L + +S ++ LQ + L
Sbjct: 427 LLEQLVLYDIYWSEEMEDR-----LQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 2e-04
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 382 SCVRLEQLVMNGNFFQGN----IPSSFSSLRGIQNLDLSRNNLSGRIPKYF-----ENFF 432
L L + + + ++ + ++ LDLS N L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 433 FLQNLNLSSNHFEGEVP 449
L+ L L ++ E+
Sbjct: 427 LLEQLVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 5e-04
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 89 SLSL--LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG----PIPASISNASNLMRL 142
SL + LD +L + +++ L +V+ + T I +++ L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 143 TIQKNGFSGK-VPSLENLYKLQRVSFSLNHL 172
++ N V + LQ S + L
Sbjct: 61 NLRSNELGDVGVHCVLQG--LQTPSCKIQKL 89
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 5e-04
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 9/81 (11%)
Query: 263 QKLQRLRLKGNKF----LGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK-----CKNL 313
L+ L L + +++ L L N L + L + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 314 ILLDLSNNNLTGTIPTEVIGL 334
L L + + + + L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 8e-04
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 27/91 (29%)
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
++ LD+ +LS L L+ Q + L L
Sbjct: 3 DIQSLDIQCEELSDARWAEL-----------------------LPLLQQCQVVRLDDCGL 39
Query: 421 SGR----IPKYFENFFFLQNLNLSSNHFEGE 447
+ I L LNL SN
Sbjct: 40 TEARCKDISSALRVNPALAELNLRSNELGDV 70
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 8e-08
Identities = 35/245 (14%), Positives = 75/245 (30%), Gaps = 7/245 (2%)
Query: 73 ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPAS 132
+ ++ + +D + ++ S I L+ L+ + + PI +
Sbjct: 31 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90
Query: 133 ISNASNLMRLTIQKNGF---SGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
++ SNL+RL + L + +L ++ S + +
Sbjct: 91 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 150
Query: 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGD- 248
++L + N L V + + L + L L+ L L
Sbjct: 151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210
Query: 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLG 308
L +G++ L+ L++ G G + L L + ++G
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIG 267
Query: 309 KCKNL 313
KN
Sbjct: 268 NKKNQ 272
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 38/300 (12%), Positives = 77/300 (25%), Gaps = 34/300 (11%)
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+++ L ++ L S ++ F + P F+ ++ ++ N+
Sbjct: 3 QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59
Query: 127 G-PIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSL--NHLGNGEKDDLEF 182
+ +S S L L+++ S + +L L R++ S + L
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 183 VSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLE 242
S L + + + + + ++ N Q +
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179
Query: 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302
L L LQ L L +
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-----------------------YDIIPE 216
Query: 303 IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362
LG+ L L + GT+ L L ++ + G KN
Sbjct: 217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH----LQINCSHFTTIARPTIGNKKNQ 272
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 37/246 (15%), Positives = 83/246 (33%), Gaps = 11/246 (4%)
Query: 244 LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG-S 302
LDL + G + + R + F+ + + + + + + +E +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQG-VIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 303 IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSL-SIYLDLSKNQLNGPLPSNFGILKN 361
+ L +C L L L L+ I + S+L + L L +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 362 LGVLDV------SENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL 415
L L++ +E + + + + +L N + ++ + + +LDL
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 416 SRN-NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISE 474
S + L + F +LQ+L+LS + + + + +L + G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 475 LHLSTC 480
L
Sbjct: 243 LLKEAL 248
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 26/131 (19%)
Query: 266 QRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG 325
Q L L G ++ + + ++ + ++ + + +DLSN+ +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60
Query: 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 385
L L L + +LS I N+L
Sbjct: 61 ------------------------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 96
Query: 386 LEQLVMNGNFF 396
L +L ++G
Sbjct: 97 LVRLNLSGCSG 107
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 38/277 (13%), Positives = 86/277 (31%), Gaps = 19/277 (6%)
Query: 141 RLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN 200
L + V L ++F + F + R++ M++S +
Sbjct: 4 TLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHF-----SPFRVQHMDLSNS 56
Query: 201 NFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF--------T 252
+ + ++L+ ++ +L I + L NL L+L
Sbjct: 57 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116
Query: 253 GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKN 312
+ +L + +T L + N + + + + +C N
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176
Query: 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK-NQLNGPLPSNFGILKNLGVLDVSENK 371
L+ LDLS++ + + + +L LS+ + G + L L V
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236
Query: 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR 408
G + + L+ +N + F + + +
Sbjct: 237 PDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399
L L+ L + L + LD+S N+L P +L + LE V+ +
Sbjct: 2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALE 56
Query: 400 IPSSFSSLRGIQNLDLSRNNL-SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452
++L +Q L L N L + + L LNL N E I+
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 5e-06
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
+ L + L L+ + LDL N+ ++ L+ L+ L + + E V
Sbjct: 7 HKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVL--QASDNALENVDGV 61
Query: 284 GNLTLLFTLSFEGNRLEG-SIPSSLGKCKNLILLDLSNNNLTG 325
NL L L NRL+ + L C L+LL+L N+L
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 1e-05
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
L L++ +LT + + L ++ +LDLS N+L P+ L+ L VL S+N L
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVT-HLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58
Query: 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434
+ ++ L N Q S + L+L N+L E +
Sbjct: 59 DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 5e-05
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 244 LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI 303
L L T +L + L + L L N+ L +P ++ L L L N
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA--LEN 57
Query: 304 PSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350
+ L L L NN L + + + + L+L N L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 9/111 (8%)
Query: 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE--TLSELKRMRSIGFGANKL 76
R L + +L+ + L + L + N+ P L L+ +++ +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 77 SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127
G L N+LQ S + P L +LN N
Sbjct: 59 DGVANLPRLQE-----LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.4 bits (106), Expect = 5e-06
Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 21/217 (9%)
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
L N + G + T + + DL + L G + I V L L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTG-VTTI-EGVQYLNNLIGLELKD 72
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK----------- 345
N++ P + L + I + ++
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 346 --NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSS 403
+ + + + +S L + +L L + N P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 404 FSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440
+SL + + L N +S P N L + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 26/236 (11%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
L N + G + T + + ++ + L+ G + + ++ L L + N
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI 231
+ + + + S + +S + + + +
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 232 PSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291
L + N+ L N I + + NL+ L T
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSI-----------------GNAQVSDLTPLANLSKLTT 177
Query: 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQ 347
L + N++ P L NLI + L NN ++ P + S+L + L+ NQ
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF-IVTLT-NQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 19/217 (8%)
Query: 63 LKRMRSIGFGANKLSGEIPFS-IYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFG 121
L I G + ++ + + + +++LS V ++G + + L NL L
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQY-LNNLIGLELK 71
Query: 122 NNQFTGPIPAS--------ISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLG 173
+NQ T P + + L ++ S K L + +
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPS 233
DL ++++ + L ++ + + ++L +N++ P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 234 GLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270
L +L NL + L +NQ + + + + L + L
Sbjct: 191 -LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.5 bits (83), Expect = 0.004
Identities = 32/222 (14%), Positives = 76/222 (34%), Gaps = 17/222 (7%)
Query: 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMR 141
F L++ + + + ++ L + L+ T + +NL+
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67
Query: 142 LTIQKNGF--SGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISI 199
L ++ N + +L + +L+ L ++ L + ++ ++
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 200 NNFGGMLPESVGNLSTRLKRFTVGNNQLF------GNIPSGLGNLVNLELLDLGDNQFTG 253
+ +L + ++ + N Q + + L NL L L DN+ +
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 254 RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295
+ + L L + LK N+ P + N + LF ++
Sbjct: 188 --ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 6e-05
Identities = 31/227 (13%), Positives = 58/227 (25%), Gaps = 8/227 (3%)
Query: 103 SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKL 162
+PSD+ N L F + + S +L ++ I +N + +
Sbjct: 22 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78
Query: 163 QRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTV 222
+ + N + E +L N L + I + + + +
Sbjct: 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138
Query: 223 GNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS 282
+ + N G +L L N + Q + N
Sbjct: 139 NIHTIERNSFVG--LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196
Query: 283 VGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT 329
+ L R+ L K L N +PT
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 101 QGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLE 157
LP+D+ +L+ + + N L + K+P+LE
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPTLE 242
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 5/215 (2%)
Query: 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290
IPS L N L + G+ L+++ + N L I + V +
Sbjct: 23 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80
Query: 291 ---TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQ 347
+ N L + + LL + ++ L + + + + N
Sbjct: 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 348 LNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSL 407
S G+ +L +++N + + E + + N + F
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 408 RGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442
G LD+SR + EN L+ + +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (83), Expect = 0.003
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLS 46
S L + + NL L S
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 7/144 (4%)
Query: 226 QLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN 285
+L N V LDL + I L + + N+
Sbjct: 6 ELIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPL 61
Query: 286 LTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLS- 344
L L TL NR+ +L L L+NN+L + + YL +
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121
Query: 345 --KNQLNGPLPSNFGILKNLGVLD 366
+ + VLD
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLD 145
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 17/198 (8%)
Query: 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMR 141
FS + + + ++ + L +++ + N+ I N+ +
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQG--IQYLPNVTK 72
Query: 142 LTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINN 201
L + N + P L NL L + N + + ++ + +I+
Sbjct: 73 LFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131
Query: 202 FGGMLPESVGNLSTRLKRFTVGNNQLFGNI---------PSGLGNLVNLELLDLGDNQFT 252
L + + + L L L+ L L N +
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191
Query: 253 GRILGSIGDLQKLQRLRL 270
L ++ L+ L L L
Sbjct: 192 D--LRALAGLKNLDVLEL 207
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 17/205 (8%)
Query: 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
+L T + + +L + ++ + + L + L G
Sbjct: 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNF 356
N+L P + +L N +V LSSL L L S+
Sbjct: 78 NKLTDIKPLA----------NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
L +L L+ + ++ S + + + +I + L +QNL LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 186
Query: 417 RNNLSGRIPKYFENFFFLQNLNLSS 441
+N++S + L L L S
Sbjct: 187 KNHISD--LRALAGLKNLDVLELFS 209
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 6e-04
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK-NQLNGPLPSNFGILK 360
+ + K + L L L + +I + L++ + + L +
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLR-----SDPDLVAQNIDVVLNRRSSMAATLRIIEENIP 65
Query: 361 NLGVLDVSENKLSG--EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418
L L++S N+L ++ + + L+ L ++GN + ++ L L N
Sbjct: 66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125
Query: 419 NLSGRIPKYF 428
+LS
Sbjct: 126 SLSDTFRDQS 135
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.9 bits (86), Expect = 0.002
Identities = 41/324 (12%), Positives = 84/324 (25%), Gaps = 27/324 (8%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGE----IPSSFGNLSSLEFLSAAVNQFVGQIP 57
E V L ++ + + N + E + + + LE +
Sbjct: 17 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD 76
Query: 58 ETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI--GFTLPNL 115
E L+ + KL + L L
Sbjct: 77 EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 136
Query: 116 EVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLEN-----LYKLQRVSFSLN 170
+ NA L + +N L V
Sbjct: 137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV-Q 195
Query: 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN---LSTRLKRFTVGNNQL 227
+ E + + L L+++++ N F + ++ L+ + + L
Sbjct: 196 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255
Query: 228 FGNIPSGLGN------LVNLELLDLGDNQFTGRILGSIGD-----LQKLQRLRLKGNKFL 276
+ + + + L+ L L N+ + ++ + L L L GN+F
Sbjct: 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF- 314
Query: 277 GEIPSSVGNLTLLFTLSFEGNRLE 300
E V + +F+ G E
Sbjct: 315 SEEDDVVDEIREVFSTRGRGELDE 338
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.003
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 2/120 (1%)
Query: 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSNFGILK 360
L +NL L + N + + GL L + K+ L P F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL-TIVKSGLRFVAPDAFHFTP 80
Query: 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
L L++S N L ++ E ++ + L
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.2 bits (82), Expect = 0.004
Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 48/209 (22%)
Query: 94 DFPVNQLQGSLPSDIGFTLPNLE---VLNFGNNQFTGPIPASISNASNLMRLTIQKNGFS 150
D P+NQ+ FT L G T + S ++ + L + G
Sbjct: 5 DTPINQI---------FTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK 53
Query: 151 GKVPSLENLYKLQRVSFSLNHLGNGEK-----------DDLEFVSSLVNASRLEMMEISI 199
+ +E L L +++FS N L + + ++ + + L +
Sbjct: 54 -SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 112
Query: 200 NNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI--------------------PSGLGNLV 239
+ T L R + +N + L NL
Sbjct: 113 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT 172
Query: 240 NLELLDLGDNQFTGRILGSIGDLQKLQRL 268
LE LD+ N+ + + + L L+ L
Sbjct: 173 TLERLDISSNKVSD--ISVLAKLTNLESL 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.76 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.74 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.66 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.61 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.54 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.49 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.48 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.45 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.36 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.3 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.43 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.4 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.9 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.83 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.33 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.24 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=6.3e-29 Score=227.62 Aligned_cols=254 Identities=29% Similarity=0.488 Sum_probs=231.0
Q ss_pred cccEEEcccccccc--ccchhccCCCCCCEEEccC-CcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEE
Q 041473 216 RLKRFTVGNNQLFG--NIPSGLGNLVNLELLDLGD-NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 216 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
++++|+++++.+.. .+|..++.+++|++|++++ |.+.+..|..+.++++|++|++++|.+....+..+..++.|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 68899999988775 3678899999999999987 67776788889999999999999999988788888999999999
Q ss_pred ecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcc
Q 041473 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372 (488)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 372 (488)
+++.|.+.+..|..+..++.++.+++++|.+.+.+|..+.....+.+.+.+++|++.+..+..+..+.. ..+++.++..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999998999999999999999999999998999999888888789999999999888888877654 4799999998
Q ss_pred cCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcc
Q 041473 373 SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 452 (488)
.+.+|..+..+++++.+++.+|.+.... ..+..+++|+.|++++|++++.+|+.|..+++|++|++++|.+++.+|..+
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~ 288 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence 8889999999999999999999998544 467888999999999999999999999999999999999999999999988
Q ss_pred ccCCcceeeecCCCCcccc
Q 041473 453 VFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 453 ~~~~L~~l~l~~n~~~c~~ 471 (488)
.+++|+.++++||+..|+.
T Consensus 289 ~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 289 NLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TGGGSCGGGTCSSSEEEST
T ss_pred cCCCCCHHHhCCCccccCC
Confidence 9999999999999999985
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=1.2e-25 Score=212.35 Aligned_cols=356 Identities=26% Similarity=0.339 Sum_probs=220.9
Q ss_pred EeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCc
Q 041473 21 LAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQL 100 (488)
Q Consensus 21 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (488)
..+..+.+++.+. ...+.+|++|++++++++.. +.+..+++|++|++++|.+++ ++ .+.++++|++|++++|.+
T Consensus 27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQI 100 (384)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccc
Confidence 3455555554332 34567788888888888643 457788889999999988884 33 378888999999999888
Q ss_pred CCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCc
Q 041473 101 QGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDD 179 (488)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 179 (488)
. .++. +. .+++|+.|++.++.+.... .......+.......+.+...... ................
T Consensus 101 ~-~i~~-l~-~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 167 (384)
T d2omza2 101 A-DITP-LA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-------- 167 (384)
T ss_dssp C-CCGG-GT-TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC--------
T ss_pred c-cccc-cc-ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccch--------
Confidence 7 5543 33 6888999998888776322 233444555555544433221110 0000000000000000
Q ss_pred hhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccc
Q 041473 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSI 259 (488)
Q Consensus 180 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l 259 (488)
...+... ..........+.. ........+++++.++++++.+....+ +
T Consensus 168 ---~~~~~~~-------------------------~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~ 215 (384)
T d2omza2 168 ---LKPLANL-------------------------TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--L 215 (384)
T ss_dssp ---CGGGTTC-------------------------TTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred ---hhhhccc-------------------------ccccccccccccc--ccccccccccccceeeccCCccCCCCc--c
Confidence 0000000 1122222222221 122334556677777777776654332 3
Q ss_pred cCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCcee
Q 041473 260 GDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI 339 (488)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 339 (488)
..+++|++|++++|.+.+. ..+..+++|+.+++++|.+.+.. .+..+++|++++++++.+.+ ++. +..+... +
T Consensus 216 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~l-~ 288 (384)
T d2omza2 216 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN-ISP-LAGLTAL-T 288 (384)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CGG-GTTCTTC-S
T ss_pred cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCC-CCc-ccccccc-c
Confidence 4456777777777766532 24566777777777777776432 35667778888887777763 332 3344444 6
Q ss_pred EEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc
Q 041473 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419 (488)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 419 (488)
.+.++.+.+.+ ...+..++++++|++++|.+++. + .+..+++|++|++++|++++ .+ .+.++++|++|++++|+
T Consensus 289 ~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 289 NLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQ 362 (384)
T ss_dssp EEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC
T ss_pred ccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCc
Confidence 77777777763 23466778889999999988743 3 37788899999999998874 33 57888999999999999
Q ss_pred cCCccchhhhccccCceeeccCc
Q 041473 420 LSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 420 ~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
+++..| +.++++|+.|+|++|
T Consensus 363 l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 363 ISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCChh--hccCCCCCEeeCCCC
Confidence 886554 788899999999887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=5.8e-25 Score=207.49 Aligned_cols=357 Identities=25% Similarity=0.338 Sum_probs=250.1
Q ss_pred ccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCc
Q 041473 45 LSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQ 124 (488)
Q Consensus 45 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (488)
..+..+.+++... ...+.+|++|+++++.++. + .++..+++|++|++++|+++ .++. +. .+++|++|++++|+
T Consensus 27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~ 99 (384)
T d2omza2 27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQ 99 (384)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSC
T ss_pred HHhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc-cc-CCcccccccccccc
Confidence 3455555543332 3466788999999998873 3 46778899999999999888 6654 33 68899999999988
Q ss_pred ccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccc
Q 041473 125 FTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGG 204 (488)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 204 (488)
+... + .+..+++|+.+++.++.+.+... ......+.......+.+....
T Consensus 100 i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---------------------------- 148 (384)
T d2omza2 100 IADI-T-PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS---------------------------- 148 (384)
T ss_dssp CCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG----------------------------
T ss_pred cccc-c-ccccccccccccccccccccccc-ccccccccccccccccccccc----------------------------
Confidence 8632 2 37788888888888776654322 222233333333322221100
Q ss_pred cCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCcccc
Q 041473 205 MLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVG 284 (488)
Q Consensus 205 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 284 (488)
..... ........ .... .....+...+.........+... ....+..+++++.+.+++|.+.+..+ ..
T Consensus 149 --~~~~~---~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~ 216 (384)
T d2omza2 149 --ALSGL---TSLQQLSF-GNQV--TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LG 216 (384)
T ss_dssp --GGTTC---TTCSEEEE-EESC--CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred --ccccc---cccccccc-cccc--chhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--cc
Confidence 00000 00111111 1111 11123444455555555555443 34456678899999999998875543 46
Q ss_pred CCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccE
Q 041473 285 NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV 364 (488)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~ 364 (488)
.+++|+++++++|.+.. ...+..+++|+.+++++|.+++..+ +...+.+ ++++++++.+.+.. .+..++.++.
T Consensus 217 ~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L-~~L~l~~~~l~~~~--~~~~~~~l~~ 289 (384)
T d2omza2 217 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL-TELKLGANQISNIS--PLAGLTALTN 289 (384)
T ss_dssp GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC-SEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccC-CEeeccCcccCCCC--cccccccccc
Confidence 67899999999999874 3467889999999999999884332 5566666 89999999987443 3677889999
Q ss_pred EEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccc
Q 041473 365 LDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 365 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
+.+.+|.+.+ + ..+..+++++.|++++|++.+.. .+..+++|++|++++|+++. ++ .+.++++|++|++++|++
T Consensus 290 l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l 363 (384)
T d2omza2 290 LELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI 363 (384)
T ss_dssp EECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC
T ss_pred cccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC
Confidence 9999999873 3 35778999999999999998543 47889999999999999984 33 689999999999999999
Q ss_pred ccccCCccccCCcceeeecCC
Q 041473 445 EGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 445 ~~~~~~~~~~~~L~~l~l~~n 465 (488)
++.. ....+++|+.|+|++|
T Consensus 364 ~~l~-~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 364 SDLT-PLANLTRITQLGLNDQ 383 (384)
T ss_dssp CBCG-GGTTCTTCSEEECCCE
T ss_pred CCCh-hhccCCCCCEeeCCCC
Confidence 8544 4788999999999987
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-25 Score=202.62 Aligned_cols=247 Identities=22% Similarity=0.235 Sum_probs=201.6
Q ss_pred EEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC-CCc
Q 041473 220 FTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE-GNR 298 (488)
Q Consensus 220 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~ 298 (488)
+...++.++ .+|..+ .+++++|+|++|.+....+.+|.++++|++|+++++.+....+..+..++.++++.+. .+.
T Consensus 16 v~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 344444444 334333 2567888888888876667778888888888888888876666677777888887765 445
Q ss_pred cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcc
Q 041473 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378 (488)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 378 (488)
+....+..+..+++|++|++++|.+....+..+.....+ +.+++++|.+++..+..|..+++|++|++++|.++...+.
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhccc-chhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence 665667778888899999999888774445555555555 7899999998877778888899999999999999877778
Q ss_pred ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcc
Q 041473 379 SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSS 458 (488)
Q Consensus 379 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~ 458 (488)
+|.++++|+++++.+|+++...+..|.++++|++|++++|.+.+..+.+|..+++|++|++++|++.++++..+....++
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~ 251 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHH
Confidence 89999999999999999998889999999999999999999998888999999999999999999999998877778888
Q ss_pred eeeecCCCCccc
Q 041473 459 AISLDGNDNLCG 470 (488)
Q Consensus 459 ~l~l~~n~~~c~ 470 (488)
......+...|.
T Consensus 252 ~~~~~~~~~~C~ 263 (284)
T d1ozna_ 252 KFRGSSSEVPCS 263 (284)
T ss_dssp HCCSEECCCBEE
T ss_pred hCcCCCCceEeC
Confidence 888888888885
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.93 E-value=1.6e-25 Score=204.78 Aligned_cols=252 Identities=29% Similarity=0.487 Sum_probs=216.7
Q ss_pred CccEEecCCCcccc--cCchhhhhhhccccEEEccc-cccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccE
Q 041473 191 RLEMMEISINNFGG--MLPESVGNLSTRLKRFTVGN-NQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQR 267 (488)
Q Consensus 191 ~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 267 (488)
+++.++++++.+.+ .++..+..+ ++|++|++++ +.+.+.+|..++++++|++|++++|.+.+..+..+..+.+|+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcC-ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 45556666655443 356677776 5899999987 6777778889999999999999999998777778888999999
Q ss_pred EEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCC-cEEEccCCcCccccchhhhcccCceeEEEccCC
Q 041473 268 LRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL-ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN 346 (488)
Q Consensus 268 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~ 346 (488)
+++++|.+....|..+..++.++++++++|.+.+..|..+..+.++ +.+++++|++++..+..+...... .++++.+
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~--~l~l~~~ 207 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--FVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS--EEECCSS
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 9999999888888899999999999999999988889888887775 889999999998888777665443 6899999
Q ss_pred cccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccch
Q 041473 347 QLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426 (488)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 426 (488)
...+.++..+..+++++.+++++|.+...+ ..+..+++|+.|++++|+++...|..+.++++|++|+|++|++++.+|+
T Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 998888989999999999999999998554 4678899999999999999988999999999999999999999988884
Q ss_pred hhhccccCceeeccCcccccc
Q 041473 427 YFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 427 ~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+..+++|+.+++++|+..+-
T Consensus 287 -~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 287 -GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -STTGGGSCGGGTCSSSEEES
T ss_pred -cccCCCCCHHHhCCCccccC
Confidence 57899999999999986553
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=3e-23 Score=188.78 Aligned_cols=252 Identities=21% Similarity=0.260 Sum_probs=206.0
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+.+++|++++|.++...+.++.++++|++|+++++.+....+..|..+++|++|++++|.+... +.. ..+.++.+.+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~--~~~~l~~L~~ 107 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEK--MPKTLQELRV 107 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSS--CCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-ccc--hhhhhhhhhc
Confidence 5799999999998866666789999999999999999877788899999999999999988743 332 3467888999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCc--cccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLT--GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 372 (488)
.+|.+.+..+..+........+....+... ...+..+..++.+ +++++++|.+. .++..+ +++|++|++++|..
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L-~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~ 183 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL-SYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI 183 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC-CEEECCSSCCC-SCCSSC--CTTCSEEECTTSCC
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCcccccccccc-CccccccCCcc-ccCccc--CCccCEEECCCCcC
Confidence 998888666666777788888888887543 2334455566666 89999999887 344333 57899999999999
Q ss_pred cCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC---
Q 041473 373 SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP--- 449 (488)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--- 449 (488)
+...+..|..++.++.|++++|.+....+..+.++++|++|++++|+++ .+|.+|..+++|++|++++|+++. ++
T Consensus 184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~ 261 (305)
T d1xkua_ 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSND 261 (305)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTS
T ss_pred CCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhh
Confidence 8788888999999999999999999888889999999999999999998 567889999999999999999874 32
Q ss_pred -----CccccCCcceeeecCCCCcccccccc
Q 041473 450 -----IKGVFSNSSAISLDGNDNLCGGISEL 475 (488)
Q Consensus 450 -----~~~~~~~L~~l~l~~n~~~c~~~~~l 475 (488)
......+|+.|+++||||.+..++..
T Consensus 262 f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~ 292 (305)
T d1xkua_ 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292 (305)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred ccCcchhcccCCCCEEECCCCcCccCcCCHh
Confidence 23456889999999999988776643
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.9e-22 Score=183.40 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEe
Q 041473 311 KNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLV 390 (488)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 390 (488)
++|+.|++++|......+..+...+.+ ++|++++|.+.+..+..+..+++|++|++++|.++ .+|.++..+++|++|+
T Consensus 171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 171 PSLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248 (305)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTC-CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred CccCEEECCCCcCCCCChhHhhccccc-cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence 445555555554443334444444333 45555555555455556666777777777777777 5666777777777777
Q ss_pred cCCccccccCccccc------CCCCCCEEeccCcccC--Cccchhhhcc
Q 041473 391 MNGNFFQGNIPSSFS------SLRGIQNLDLSRNNLS--GRIPKYFENF 431 (488)
Q Consensus 391 l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~~~--~~~~~~l~~l 431 (488)
+++|+++.+....|. ..++|+.|+|++|++. ...|.+|..+
T Consensus 249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~ 297 (305)
T d1xkua_ 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297 (305)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence 777777754444433 3456666666666654 2344444443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.5e-23 Score=184.92 Aligned_cols=205 Identities=23% Similarity=0.214 Sum_probs=130.9
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILL 316 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (488)
....+.+++.+++.+.. .|..+. +++++|++++|.+....+..|.++++|++|++++|.++. ++ .+..+++|++|
T Consensus 8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL 82 (266)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence 33455566777776664 333332 467788888877765555667777778888877777763 22 34566777777
Q ss_pred EccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccc
Q 041473 317 DLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFF 396 (488)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 396 (488)
++++|++. ..+..+..++.+ ++++++++.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|++
T Consensus 83 ~Ls~N~l~-~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l 160 (266)
T d1p9ag_ 83 DLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (266)
T ss_dssp ECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccc-cccccccccccc-ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence 77777766 445555555555 6666666666655555666666666666666666644445555666666666666666
Q ss_pred cccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 397 QGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 397 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
+...++.|..+++|++|+|++|+++ .+|+.+..+++|+.|+++||++.|.+.
T Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 6555566666666666666666666 555555566666666666666666554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.1e-23 Score=184.04 Aligned_cols=234 Identities=21% Similarity=0.199 Sum_probs=197.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcc-cccccCCCCccccCCccccEEe
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK-GNKFLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~ 293 (488)
+.+++|++++|.++...+..+.++++|++|+++++.+.......+.....++.+... .+.+....+..+.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 578999999999987777789999999999999999987777788888899998775 4556656677899999999999
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+....+..+...++|+.+++++|.+++..+..+.....+ ++|++++|.+.+..+.+|..+++|+.+++++|.++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~ 190 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccch-hhcccccCcccccchhhhccccccchhhhhhcccc
Confidence 99999887777788888999999999999985555566666666 89999999999888899999999999999999999
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
...|..|..+++|++|++++|.+....+..|..+++|++|++++|++...-+ ...-...++.+....+.+.+..|.
T Consensus 191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~ 266 (284)
T d1ozna_ 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ 266 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESG
T ss_pred ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCch
Confidence 8889999999999999999999998888999999999999999999885432 112223566677777788876663
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.6e-21 Score=173.16 Aligned_cols=197 Identities=24% Similarity=0.261 Sum_probs=109.5
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
+.+++.+++.++. +|..+. +++++|+|++|.+....+..|..+++|++|++++|.++. ++ .++.+++|++|++++
T Consensus 12 ~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 12 HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred CeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence 3444555555542 333331 356666666666655444556666666666666665542 22 234556666666666
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
|++. ..+..+..+++|+.|++++|.+....+..+..+..+ +++.+++|.+....+..+..++.++.+++++|.++...
T Consensus 87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred cccc-ccccccccccccccccccccccceeecccccccccc-ccccccccccceeccccccccccchhcccccccccccC
Confidence 6655 334455556666666666665553333333334444 56666666665555555555666666666666666444
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+..|..+++|++|++++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 455556666666666666665 34444445566666666666554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.9e-21 Score=186.37 Aligned_cols=241 Identities=17% Similarity=0.113 Sum_probs=102.4
Q ss_pred hhhccCCCccEEecCCCcccccCch----hhhhhhccccEEEccccccccc----cchhccCCCCCCEEEccCCcCCCC-
Q 041473 184 SSLVNASRLEMMEISINNFGGMLPE----SVGNLSTRLKRFTVGNNQLFGN----IPSGLGNLVNLELLDLGDNQFTGR- 254 (488)
Q Consensus 184 ~~l~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~- 254 (488)
..+.....++.+.++.+........ .+.........+.+..+.+... ....+...+.++.+++.++.....
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 3344555666666665544322111 1112122345555555544321 111233455666666666644311
Q ss_pred ----ccccccCCCCccEEEcccccccCCCC----ccccCCccccEEecCCCccCCCCCcc-----ccCCCCCcEEEccCC
Q 041473 255 ----ILGSIGDLQKLQRLRLKGNKFLGEIP----SSVGNLTLLFTLSFEGNRLEGSIPSS-----LGKCKNLILLDLSNN 321 (488)
Q Consensus 255 ----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~ 321 (488)
..........++.+++++|.+..... ..+...+.++.+++++|.+....... ....+.|+.+++++|
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~ 322 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 11222334556666666665432111 11233455555555555543211110 112234555555555
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC----cccc-ccCCCCCEEecCCccc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI----PNSL-GSCVRLEQLVMNGNFF 396 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~~~~L~~L~l~~n~l 396 (488)
.+.......+. ..+...++|++|++++|.+.... +..+ ...+.|++|++++|.+
T Consensus 323 ~l~~~~~~~l~---------------------~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 381 (460)
T d1z7xw1 323 SFTAACCSHFS---------------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 381 (460)
T ss_dssp CCBGGGHHHHH---------------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred chhhhhhhhcc---------------------cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCC
Confidence 44422111111 11122344555555555554221 1122 1234455555555555
Q ss_pred cccC----cccccCCCCCCEEeccCcccCCccchhhh-----ccccCceeeccCcccc
Q 041473 397 QGNI----PSSFSSLRGIQNLDLSRNNLSGRIPKYFE-----NFFFLQNLNLSSNHFE 445 (488)
Q Consensus 397 ~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~ 445 (488)
++.. .+.+..+++|++|+|++|+++......|. ....|+.|++.+|.+.
T Consensus 382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence 4321 22333445555555555555533222221 1124555666555554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.78 E-value=1.1e-16 Score=148.08 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=36.9
Q ss_pred CCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeee
Q 041473 383 CVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISL 462 (488)
Q Consensus 383 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l 462 (488)
+++|++|++++|++.. .|. .+++|+.|++++|+++ .+|+. +++|++|++++|+++ .+|. .+.+|+.|.+
T Consensus 283 ~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~--~~~~L~~L~~ 351 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD--IPESVEDLRM 351 (353)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC--CCTTCCEEEC
T ss_pred CCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc--cccccCeeEC
Confidence 4556666666665552 222 2456666666666665 33322 345666677777655 4443 2345555554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.76 E-value=7.3e-16 Score=142.54 Aligned_cols=190 Identities=26% Similarity=0.327 Sum_probs=102.6
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+.++.+.+..+...... . .....+.+......+.. ...+..++.++.+++++|.... .+ ....++..+.+
T Consensus 162 ~~l~~L~l~~n~~~~~~-~---~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~ 231 (353)
T d1jl5a_ 162 PFLTAIYADNNSLKKLP-D---LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNV 231 (353)
T ss_dssp TTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEEC
T ss_pred ccceecccccccccccc-c---ccccccccccccccccc--cccccccccccccccccccccc-cc---ccccccccccc
Confidence 35666666666544221 1 11223445554443331 1234456777777777765442 22 23455666666
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
..+.+... +. ..+.+...++..+.+.+ +. .++......++..+.+.+. ...+++|++|++++|.++
T Consensus 232 ~~~~~~~~-~~---~~~~l~~~~~~~~~~~~-l~----~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~- 297 (353)
T d1jl5a_ 232 RDNYLTDL-PE---LPQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI- 297 (353)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-
T ss_pred cccccccc-cc---ccccccccccccccccc-cc----cccchhcccccccCccccc----cccCCCCCEEECCCCccC-
Confidence 66655421 11 12445566655554431 11 1222224455555555422 233577888888888887
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
.+|.. +++|+.|++++|+++. .++ .+++|++|++++|+++ .+|+.. .+|+.|.+
T Consensus 298 ~lp~~---~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 298 ELPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM 351 (353)
T ss_dssp CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred ccccc---cCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence 56643 5678888888888874 333 2457888888888877 455432 24555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.3e-17 Score=145.73 Aligned_cols=221 Identities=19% Similarity=0.165 Sum_probs=149.1
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCC-CccccCCccccEEecCC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI-PSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~ 296 (488)
+.++.++..++ .+|..+ .+++++|++++|.+.......|.++++|++|++++|.+.+.. +..|..++.++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 45555555555 344333 246888888888887666667788888888888888766533 34577788888887754
Q ss_pred -CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCC-CccEEEccCCcccC
Q 041473 297 -NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK-NLGVLDVSENKLSG 374 (488)
Q Consensus 297 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 374 (488)
+.+....+..+..+++|+.+++++|.+....+.........+..+...++.+....+..|..++ .++.+++++|.++.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 4565566677788888888888888776332222222222224555666666655556666654 78889999988884
Q ss_pred CCccccccCCCCCEE-ecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 375 EIPNSLGSCVRLEQL-VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
++......+++.++ .+.+|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++.+.
T Consensus 168 -i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 168 -IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235 (242)
T ss_dssp -ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred -cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence 44333345555555 56777888666777888999999999999988666667777777777776543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.74 E-value=2.4e-18 Score=144.11 Aligned_cols=173 Identities=23% Similarity=0.305 Sum_probs=101.2
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCcccc-chhhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTI-PTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
++++.++++++ .+|..+. +++++|++++|.++..+ +..+..++.+ ++|++++|.+....+..|..+++|++|+++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceE-eeeeccccccccccccccccccccceeeec
Confidence 45666666666 4555443 56777777777765333 3334445555 666666666665666666666666666666
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+|+++...+.+|.++++|++|++++|+++.+.+++|.++++|++|+|++|++..... .++. ..++...+..+.+++.
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~ 164 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence 666664445566666666666666666666666666666666666666666653321 2222 2345555555555554
Q ss_pred cCCccccCCcceeeecCCCCccc
Q 041473 448 VPIKGVFSNSSAISLDGNDNLCG 470 (488)
Q Consensus 448 ~~~~~~~~~L~~l~l~~n~~~c~ 470 (488)
.| ..+..++.++++.|...|.
T Consensus 165 ~p--~~l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 165 AP--SKVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp SS--TTTTTSBGGGSCTTTCCCC
T ss_pred CC--hhhcCCEeeecCHhhCcCC
Confidence 44 2344455556666655553
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=2.6e-17 Score=141.96 Aligned_cols=202 Identities=25% Similarity=0.320 Sum_probs=104.7
Q ss_pred EEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCc
Q 041473 219 RFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298 (488)
Q Consensus 219 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (488)
.+++....+++.. .++.+.+|+.|++.++.+.+. ..+..+++|++|++++|.+.+..+ +.++++++++++++|.
T Consensus 23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (227)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence 3444455544332 345567788888888877643 346778888888888887764332 6777888888888777
Q ss_pred cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcc
Q 041473 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378 (488)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 378 (488)
++. ...+.++++|+.++++++...+.. .+...+.. ..+.++++.+... ..+..+++|++|++++|.+... .
T Consensus 97 ~~~--i~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~-~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~ 167 (227)
T d1h6ua2 97 LKN--VSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNL-QVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--T 167 (227)
T ss_dssp CSC--CGGGTTCTTCCEEECTTSCCCCCG--GGTTCTTC-CEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred ccc--cccccccccccccccccccccccc--hhccccch-hhhhchhhhhchh--hhhccccccccccccccccccc--h
Confidence 652 234667777777777777654221 12222222 3444444444311 1233344444555444444311 1
Q ss_pred ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 379 SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 379 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
.+.++++|++|++++|++++. + .+.++++|++|++++|++++..+ +.++++|++|++
T Consensus 168 ~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~l 224 (227)
T d1h6ua2 168 PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (227)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEe
Confidence 233444444444444444321 1 13444444444444444442211 334444444444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=2.7e-17 Score=141.82 Aligned_cols=202 Identities=22% Similarity=0.285 Sum_probs=129.4
Q ss_pred EEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcC
Q 041473 244 LDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNL 323 (488)
Q Consensus 244 L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 323 (488)
+++..+.+.+ ...+..+.+|+.|.+.+|.+.+. + .+..+++|++|++++|.+.+.. .+..+++++.+++++|.+
T Consensus 24 ~~l~~~~~~d--~~~~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 24 IAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTTCSSTTS--EECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCC--cCCHHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence 3444444442 22344566777777777777643 2 3667777777777777776433 266777777777777776
Q ss_pred ccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCccc
Q 041473 324 TGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSS 403 (488)
Q Consensus 324 ~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 403 (488)
+ .++ .+..++.+ ++++++++...+. ..+...+.+..+.++++.+... ..+..+++|++|++++|.+... ..
T Consensus 98 ~-~i~-~l~~l~~L-~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~ 168 (227)
T d1h6ua2 98 K-NVS-AIAGLQSI-KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TP 168 (227)
T ss_dssp S-CCG-GGTTCTTC-CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred c-ccc-cccccccc-ccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hh
Confidence 5 333 34455555 6777777766532 2344556777777777766532 2355677777777777776532 23
Q ss_pred ccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeec
Q 041473 404 FSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLD 463 (488)
Q Consensus 404 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~ 463 (488)
+.++++|+.|++++|++++. + .+.++++|++|++++|+++ .++....+++|+.|+++
T Consensus 169 l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt-~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 169 LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLT 225 (227)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEE
T ss_pred hcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC-CCcccccCCCCCEEEee
Confidence 66777777777777777643 2 3677777777777777776 44556667777777765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.9e-19 Score=173.40 Aligned_cols=387 Identities=18% Similarity=0.129 Sum_probs=200.2
Q ss_pred ccccccccccccccccc-chhhcCCCCccEEEeecccccc----ccchhhhccCCCcEEecccCCcCCCCCcchh----c
Q 041473 40 SSLEFLSAAVNQFVGQI-PETLSELKRMRSIGFGANKLSG----EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIG----F 110 (488)
Q Consensus 40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~ 110 (488)
++|+.|++++++++... ...+..++++++|+|++|.++. .+...+..+++|++|++++|.+++.-...+. .
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 35788888888876432 3346777888888888888763 3344566778888888888876521111111 1
Q ss_pred cCCCCcEEEcCCCccccc----CCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhh
Q 041473 111 TLPNLEVLNFGNNQFTGP----IPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186 (488)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (488)
...+|++|++++|+++.. .+..+..+++|++|++++|.+...... .....+
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~-------------------------~l~~~l 136 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-------------------------LLCEGL 136 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-------------------------HHHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhh-------------------------hhhhcc
Confidence 234678888887776533 223455667777777777655421100 001111
Q ss_pred cc-CCCccEEecCCCcccccCchhhh---hhhccccEEEcccccccccc----chhc-cCCCCCCEEEccCCcCCCCc--
Q 041473 187 VN-ASRLEMMEISINNFGGMLPESVG---NLSTRLKRFTVGNNQLFGNI----PSGL-GNLVNLELLDLGDNQFTGRI-- 255 (488)
Q Consensus 187 ~~-~~~L~~l~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~----~~~l-~~l~~L~~L~L~~~~~~~~~-- 255 (488)
.. .....................+. .....++.+.++.+...... ...+ ........+.+..+......
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 216 (460)
T d1z7xw1 137 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 216 (460)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred cccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 10 01111222222211111111110 11134555555554432110 0011 11223444555544333211
Q ss_pred --cccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccc----cch
Q 041473 256 --LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGT----IPT 329 (488)
Q Consensus 256 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~ 329 (488)
...+...+.++.+.+.++.+.+.... ..........+.++.+++++|.+... ...
T Consensus 217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~-------------------~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~ 277 (460)
T d1z7xw1 217 DLCGIVASKASLRELALGSNKLGDVGMA-------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 277 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHH-------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred cccccccccccccccchhhccccccccc-------------------hhhcccccccccccccccccccccccccccccc
Confidence 11122334455555554433211000 00111222234455555555544311 111
Q ss_pred hhhcccCceeEEEccCCcccccCCc----c-ccCCCCccEEEccCCcccCCCc----cccccCCCCCEEecCCccccccC
Q 041473 330 EVIGLSSLSIYLDLSKNQLNGPLPS----N-FGILKNLGVLDVSENKLSGEIP----NSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 330 ~~~~~~~l~~~L~l~~~~~~~~~~~----~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
.+...+.+ +.+++++|.+.+.... . ......|+.+++++|.+..... ..+..+++|++|++++|.+++.+
T Consensus 278 ~l~~~~~l-~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g 356 (460)
T d1z7xw1 278 VLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356 (460)
T ss_dssp HHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred cccccccc-cccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc
Confidence 12222233 4555555554321111 1 1223578999999998874433 33456789999999999987543
Q ss_pred c----ccc-cCCCCCCEEeccCcccCCc----cchhhhccccCceeeccCcccccc-----cCCcc-ccCCcceeeecCC
Q 041473 401 P----SSF-SSLRGIQNLDLSRNNLSGR----IPKYFENFFFLQNLNLSSNHFEGE-----VPIKG-VFSNSSAISLDGN 465 (488)
Q Consensus 401 ~----~~~-~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~-----~~~~~-~~~~L~~l~l~~n 465 (488)
. +.+ ...+.|++|++++|.++.. +++.+..+++|++|++++|+++.. ..... ....|+.|++.+|
T Consensus 357 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~ 436 (460)
T d1z7xw1 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence 2 223 3467899999999999854 456677889999999999998742 11111 2346888888888
Q ss_pred CCcccc
Q 041473 466 DNLCGG 471 (488)
Q Consensus 466 ~~~c~~ 471 (488)
.+....
T Consensus 437 ~~~~~~ 442 (460)
T d1z7xw1 437 YWSEEM 442 (460)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 776443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=3e-17 Score=137.28 Aligned_cols=155 Identities=26% Similarity=0.366 Sum_probs=130.5
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccc-cCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
.+.++.+++.++ .+|..+. ..+++|++++|.+.. ..+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence 457888888888 7776553 333789999999975 44667888999999999999998777888889999999999
Q ss_pred CCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++|++....+++|.++++|++|+|++|+++...+.+|..+++|+++++++|++.+.++..+....++...+.++...|+.
T Consensus 86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence 99999988888999999999999999999988888899999999999999999887776666677888888888888865
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=5e-16 Score=131.69 Aligned_cols=164 Identities=26% Similarity=0.325 Sum_probs=88.1
Q ss_pred CCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEE
Q 041473 262 LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L 341 (488)
+.+|++|++++|.+... + .+..+++|++|++++|.+++.. .+..+++|+.|++++|+++ .++
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~------------- 106 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS------------- 106 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-------------
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-------------
Confidence 45667777777766532 2 2556666777777666665322 2455666666666666655 222
Q ss_pred EccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 342 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
.+..+++|+.|++++|.+. .+ ..+..+++++.+++++|.+++ ...+..+++|+.+++++|+++
T Consensus 107 -------------~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~ 169 (210)
T d1h6ta2 107 -------------SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS 169 (210)
T ss_dssp -------------GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred -------------ccccccccccccccccccc-cc-ccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 2334455555555555544 22 234455555555555555542 223444555666666666555
Q ss_pred CccchhhhccccCceeeccCcccccccCCccccCCcceeeec
Q 041473 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLD 463 (488)
Q Consensus 422 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~ 463 (488)
+.. .+.++++|++|++++|+++ .++....+++|+.|+++
T Consensus 170 ~i~--~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 170 DIV--PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELF 208 (210)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEE
T ss_pred ccc--cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEcc
Confidence 322 2455556666666666554 34445555555555554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=9.1e-16 Score=128.96 Aligned_cols=161 Identities=24% Similarity=0.348 Sum_probs=83.2
Q ss_pred CCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeE
Q 041473 261 DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIY 340 (488)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 340 (488)
.++++++|+++++.+... . .+..+++|++|++++|.+++.. .+.++++|++|++++|.+. .++ .+
T Consensus 38 ~l~~l~~L~l~~~~i~~l-~-~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~-~l--------- 102 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT-PL--------- 102 (199)
T ss_dssp HHTTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GG---------
T ss_pred HhcCCCEEECCCCCCCCc-c-ccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccc-cc---------
Confidence 456777777777776632 2 3566777777777777766432 2666777777777776654 222 13
Q ss_pred EEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCccc
Q 041473 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420 (488)
Q Consensus 341 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 420 (488)
..++.|+.|++++|..... ..+..+++|+.|++++|++.. . ..+..+++|+.|++.+|++
T Consensus 103 ----------------~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l 162 (199)
T d2omxa2 103 ----------------ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQV 162 (199)
T ss_dssp ----------------TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCC
T ss_pred ----------------ccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccc
Confidence 3344444444444444311 123344555555555554431 1 2344455555555555554
Q ss_pred CCccchhhhccccCceeeccCcccccccCCccccCCcce
Q 041473 421 SGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSA 459 (488)
Q Consensus 421 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 459 (488)
+... .+.++++|++|++++|+++ .++....+++|++
T Consensus 163 ~~l~--~l~~l~~L~~L~ls~N~i~-~i~~l~~L~~L~~ 198 (199)
T d2omxa2 163 TDLK--PLANLTTLERLDISSNKVS-DISVLAKLTNLES 198 (199)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSE
T ss_pred cCCc--cccCCCCCCEEECCCCCCC-CCccccCCCCCCc
Confidence 4321 2445555555555555544 2333344444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=9.8e-16 Score=128.73 Aligned_cols=176 Identities=24% Similarity=0.352 Sum_probs=124.8
Q ss_pred EccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccC
Q 041473 221 TVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300 (488)
Q Consensus 221 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (488)
.+..+.+++... ...++++++|+++++.+... ..++.+++|++|++++|.+.+..+ ++++++|++|++++|.+.
T Consensus 24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence 344555543322 34578999999999988743 357789999999999999875433 889999999999999887
Q ss_pred CCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc
Q 041473 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL 380 (488)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 380 (488)
.. + .+..+++|+.+++++|.... .+ .+..+++|+.|++++|.+. .++ .+
T Consensus 98 ~~-~-~l~~l~~L~~L~l~~~~~~~-~~--------------------------~~~~l~~L~~L~l~~n~l~-~~~-~l 146 (199)
T d2omxa2 98 DI-T-PLANLTNLTGLTLFNNQITD-ID--------------------------PLKNLTNLNRLELSSNTIS-DIS-AL 146 (199)
T ss_dssp CC-G-GGTTCTTCSEEECCSSCCCC-CG--------------------------GGTTCTTCSEEECCSSCCC-CCG-GG
T ss_pred cc-c-cccccccccccccccccccc-cc--------------------------ccchhhhhHHhhhhhhhhc-ccc-cc
Confidence 33 2 47889999999998887652 11 1234566777777777765 333 46
Q ss_pred ccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCcee
Q 041473 381 GSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNL 437 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 437 (488)
..+++|++|++.+|.+++. ..+.++++|++|++++|++++. + .+.++++|++|
T Consensus 147 ~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 147 SGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp TTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred cccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence 6677777777777777643 2467777888888888877643 2 46677777764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=8.4e-16 Score=130.31 Aligned_cols=179 Identities=23% Similarity=0.323 Sum_probs=110.3
Q ss_pred EccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccC
Q 041473 221 TVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300 (488)
Q Consensus 221 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (488)
.+....+++..+ ...+.+|++|+++++.+.... .+..+++|++|++++|.+.+.. .++.+++|++|++++|.++
T Consensus 30 ~l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccC--HHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence 344444443332 234678999999999887533 4778999999999999988543 3678999999999999987
Q ss_pred CCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc
Q 041473 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL 380 (488)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 380 (488)
+ ++ .+..+++|+.|++++|.+. .++ .+..+ +.++.+++++|.++. +..+
T Consensus 104 ~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l-------------------------~~l~~l~~~~n~l~~--~~~~ 152 (210)
T d1h6ta2 104 D-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHL-------------------------PQLESLYLGNNKITD--ITVL 152 (210)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGC-------------------------TTCCEEECCSSCCCC--CGGG
T ss_pred c-cc-ccccccccccccccccccc-ccc-ccccc-------------------------ccccccccccccccc--cccc
Confidence 4 33 5788999999999998765 222 23333 344444444444431 1123
Q ss_pred ccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 381 GSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
..+++|+++++++|++.+.. .+.++++|++|++++|++++ ++ .+.++++|++|+|+
T Consensus 153 ~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 153 SRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp GGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred cccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 34455555555555544221 24455555555555555542 22 34555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.9e-16 Score=136.07 Aligned_cols=202 Identities=16% Similarity=0.115 Sum_probs=150.4
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCC-CccccccCCCCccEEEccc-ccccCCCCccccCCccccEE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQKLQRLRLKG-NKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 292 (488)
+.+++|+++++.++...+..|.++++|++|++++|.+.. .....|..+++++++.+.. +.+....+..+.++++|+++
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 478999999999986666678999999999999998765 3456788889999998865 55665666778899999999
Q ss_pred ecCCCccCCCCCc-cccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccE-EEccCC
Q 041473 293 SFEGNRLEGSIPS-SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGV-LDVSEN 370 (488)
Q Consensus 293 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~-L~l~~n 370 (488)
+++++.+....+. .+..+..+..+...++.+....+..+.......+.++++++++....+..+.. +++.+ +++++|
T Consensus 109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n 187 (242)
T d1xwdc1 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNN 187 (242)
T ss_dssp EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCT
T ss_pred ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhhhcccccccc
Confidence 9999988744332 23344556666666667764444555555545588999999998655555544 45544 456778
Q ss_pred cccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 371 KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
.++...+..|.++++|++|++++|+++...+..|.++++|+.+++.+
T Consensus 188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 88844456789999999999999999977677788877777776654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.2e-16 Score=138.19 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=117.5
Q ss_pred CCCCCCEEEccCCcCCCC-ccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCc-cCCC-CCccccCCCCC
Q 041473 237 NLVNLELLDLGDNQFTGR-ILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR-LEGS-IPSSLGKCKNL 313 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L 313 (488)
...+|++|+++++.+... ....+..+++|++|++++|.+.+.....+..+++|++|++++|. ++.. .......+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 345677777777665432 23345566777777777776655444556667777777777653 3311 11223456777
Q ss_pred cEEEccCCc-Cccc-cchhhhcccCceeEEEccCCc--cccc-CCccccCCCCccEEEccCC-cccCCCccccccCCCCC
Q 041473 314 ILLDLSNNN-LTGT-IPTEVIGLSSLSIYLDLSKNQ--LNGP-LPSNFGILKNLGVLDVSEN-KLSGEIPNSLGSCVRLE 387 (488)
Q Consensus 314 ~~L~l~~~~-~~~~-~~~~~~~~~~l~~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~ 387 (488)
++|++++|. +++. +...+......++.++++++. +.+. +......+++|++|++++| .+++.....+..+++|+
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence 777777763 3311 222233333333667766542 2211 1222345677888888776 45655666677777888
Q ss_pred EEecCCc-cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 388 QLVMNGN-FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 388 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+|++++| .+++.....+.++++|+.|++++|--....+.....+|+|+ +..++++.
T Consensus 204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~ 260 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT 260 (284)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred EEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCC
Confidence 8888776 46655556667777888888877722222222224445543 45555553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.3e-15 Score=135.61 Aligned_cols=62 Identities=27% Similarity=0.276 Sum_probs=31.7
Q ss_pred cCCCCCCEEEccCCc-CCCCccccccCCCCccEEEcccc-cccCCCCccccCCccccEEecCCC
Q 041473 236 GNLVNLELLDLGDNQ-FTGRILGSIGDLQKLQRLRLKGN-KFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 236 ~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
.++++|++|+++++. +.+.....+..+++|++|++++| .+++.....++++++|++|+++++
T Consensus 172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 345556666665543 33333444455556666666654 233333334455566666666555
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.8e-15 Score=117.70 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=84.1
Q ss_pred ccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCc
Q 041473 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91 (488)
Q Consensus 12 l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 91 (488)
|.+...+|+|++++|.|+ .++..+..+++|++|++++|.+... ..|..+++|++|++++|.++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 456667788888888777 4466667777788888888877643 2467777788888888777744444456677777
Q ss_pred EEecccCCcCCCCCc-chhccCCCCcEEEcCCCcccccCCc----cccCCCCCceee
Q 041473 92 LLDFPVNQLQGSLPS-DIGFTLPNLEVLNFGNNQFTGPIPA----SISNASNLMRLT 143 (488)
Q Consensus 92 ~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~ 143 (488)
+|++++|.+. .++. .....+++|++|++++|++. ..+. .+..+++|+.||
T Consensus 91 ~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred cceecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 7777777776 5543 22335677777777777665 2332 344556666655
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.5e-14 Score=116.30 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=58.4
Q ss_pred CCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEE
Q 041473 310 CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389 (488)
Q Consensus 310 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (488)
+.++++|++++|.++ .++..+..+..+ ++|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L-~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 17 AVRDRELDLRGYKIP-VIENLGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCcCcEEECCCCCCC-ccCccccccccC-CEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence 334444444444444 223222222222 3444444444321 124445556666666666553333334455566666
Q ss_pred ecCCccccccCc-ccccCCCCCCEEeccCcccCCcc---chhhhccccCceee
Q 041473 390 VMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRI---PKYFENFFFLQNLN 438 (488)
Q Consensus 390 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~ 438 (488)
++++|.+.+... ..+..+++|++|++++|+++... +..+..+|+|+.||
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 666665553221 34555566666666666554321 12345555665554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=8e-14 Score=106.35 Aligned_cols=103 Identities=26% Similarity=0.260 Sum_probs=77.9
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
++|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++.. + .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 35777788776 333 3677788888888888887 6677778888888888888888743 3 4778888888888888
Q ss_pred ccCCcc-chhhhccccCceeeccCccccc
Q 041473 419 NLSGRI-PKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 419 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
++.+.. ...+..+++|+.|++++|+++.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 887543 3567788888888888888864
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8e-14 Score=111.20 Aligned_cols=108 Identities=20% Similarity=0.128 Sum_probs=61.8
Q ss_pred EEEccCCcccccCCccccCCCCccEEEccCC-cccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSEN-KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
.++.+++.+. ..|..+..+++|++|+++++ .++...+..|.++++|+.|++++|+++.+.+.+|.++++|++|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 3555555554 34445555666666666544 355333445666666666666666666555666666666666666666
Q ss_pred ccCCccchhhhccccCceeeccCcccccccC
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
+++...+..|.. .+|+.|+|++|++.+.+.
T Consensus 91 ~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~ 120 (156)
T d2ifga3 91 ALESLSWKTVQG-LSLQELVLSGNPLHCSCA 120 (156)
T ss_dssp CCSCCCSTTTCS-CCCCEEECCSSCCCCCGG
T ss_pred CCcccChhhhcc-ccccccccCCCcccCCch
Confidence 666444444433 356666666666655443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.48 E-value=1.2e-14 Score=133.56 Aligned_cols=136 Identities=20% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCCCcEEEccCCcCcccc----chhhhcccCceeEEEccCCccccc-----CCccccCCCCccEEEccCCcccCC----C
Q 041473 310 CKNLILLDLSNNNLTGTI----PTEVIGLSSLSIYLDLSKNQLNGP-----LPSNFGILKNLGVLDVSENKLSGE----I 376 (488)
Q Consensus 310 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~l~~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~ 376 (488)
.+.|+.+.+++|.+.... ...+.....+ +++++++|.+... +...+...++|++|++++|.++.. +
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred Ccccceeecccccccccccccccchhhhhhhh-cccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence 345555555555543221 1122223333 5555555554321 223455667788888888877532 3
Q ss_pred ccccccCCCCCEEecCCccccccCcccc----cC--CCCCCEEeccCcccCCcc----chhhh-ccccCceeeccCcccc
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSF----SS--LRGIQNLDLSRNNLSGRI----PKYFE-NFFFLQNLNLSSNHFE 445 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~--l~~L~~L~l~~n~~~~~~----~~~l~-~l~~L~~L~l~~n~~~ 445 (488)
...+..+++|++|++++|.+++.+...+ .. .+.|++|++++|.+.... ...+. .+++|+.|++++|.+.
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 3456677888888888888775433322 22 357888888888876442 33332 4577888888888876
Q ss_pred c
Q 041473 446 G 446 (488)
Q Consensus 446 ~ 446 (488)
.
T Consensus 316 ~ 316 (344)
T d2ca6a1 316 E 316 (344)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=2.5e-13 Score=103.53 Aligned_cols=118 Identities=26% Similarity=0.357 Sum_probs=78.3
Q ss_pred cEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCC
Q 041473 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG 393 (488)
Q Consensus 314 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 393 (488)
+.|++++|.++ .++ .+..+..+ ++|++++|.+. .+|..+..+++|++|++++|.++ .++ .+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L-~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCC-CEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence 35666666665 433 24455555 66666666666 44556677778888888888887 444 477788888888888
Q ss_pred ccccccC-cccccCCCCCCEEeccCcccCCc---cchhhhccccCcee
Q 041473 394 NFFQGNI-PSSFSSLRGIQNLDLSRNNLSGR---IPKYFENFFFLQNL 437 (488)
Q Consensus 394 n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L 437 (488)
|++.+.. ...+..+++|+.|++++|+++.. .......+|+|+.+
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 8887543 25677788888888888887633 22344556777665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.45 E-value=1.1e-14 Score=133.78 Aligned_cols=233 Identities=19% Similarity=0.171 Sum_probs=144.7
Q ss_pred ccCCCCCCEEEccCCcCCCC----ccccccCCCCccEEEcccccccCC----------CCccccCCccccEEecCCCccC
Q 041473 235 LGNLVNLELLDLGDNQFTGR----ILGSIGDLQKLQRLRLKGNKFLGE----------IPSSVGNLTLLFTLSFEGNRLE 300 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~~ 300 (488)
+.....+++|++++|.+... ....+...++|+.++++++..... +...+..+++|++|++++|.+.
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 106 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence 44455566666666655321 122344456666666665532211 1122455678888888888776
Q ss_pred CCC----CccccCCCCCcEEEccCCcCccccchhh-------------hcccCceeEEEccCCccccc----CCccccCC
Q 041473 301 GSI----PSSLGKCKNLILLDLSNNNLTGTIPTEV-------------IGLSSLSIYLDLSKNQLNGP----LPSNFGIL 359 (488)
Q Consensus 301 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~l~~~L~l~~~~~~~~----~~~~~~~l 359 (488)
... ...+..+++|+.|++++|.+.......+ ...+.+ +.+.++++.+... +...+...
T Consensus 107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L-~~l~l~~n~i~~~~~~~l~~~l~~~ 185 (344)
T d2ca6a1 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAKTFQSH 185 (344)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred cccccchhhhhcccccchheecccccccccccccccccccccccccccccCccc-ceeecccccccccccccccchhhhh
Confidence 432 2334457889999998887652211111 122333 6888888876532 22334557
Q ss_pred CCccEEEccCCcccCC-----CccccccCCCCCEEecCCcccccc----CcccccCCCCCCEEeccCcccCCccchhh--
Q 041473 360 KNLGVLDVSENKLSGE-----IPNSLGSCVRLEQLVMNGNFFQGN----IPSSFSSLRGIQNLDLSRNNLSGRIPKYF-- 428 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-- 428 (488)
+.|++|++++|.+... +...+..+++|+.|++++|.++.. ....+..+++|++|++++|.+.......+
T Consensus 186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~ 265 (344)
T d2ca6a1 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 265 (344)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence 7899999999987632 234567788999999999987643 23456678899999999998876533333
Q ss_pred --hc--cccCceeeccCcccccc-----cCCc-cccCCcceeeecCCCCc
Q 041473 429 --EN--FFFLQNLNLSSNHFEGE-----VPIK-GVFSNSSAISLDGNDNL 468 (488)
Q Consensus 429 --~~--l~~L~~L~l~~n~~~~~-----~~~~-~~~~~L~~l~l~~n~~~ 468 (488)
.. .+.|++|++++|.+... .... ...++|+.|+++||...
T Consensus 266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 33 35689999999987642 1111 23567888888888654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.1e-12 Score=104.55 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=79.8
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCc-cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN-FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
..+.++.+++.+. ..|..+..+++|++|++.++ .++.+.+.+|.++++|+.|++++|+++...+.+|.++++|++|+|
T Consensus 9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 3456777777776 56667777778888888665 477666677888888888888888887777777888888888888
Q ss_pred cCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 440 SSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 440 ~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++|+++...+..-...+|+.|+|+||||.|++
T Consensus 88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C 119 (156)
T d2ifga3 88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (156)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred cCCCCcccChhhhccccccccccCCCcccCCc
Confidence 88887744333333446778888888887765
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.30 E-value=7.6e-14 Score=116.31 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=63.6
Q ss_pred cchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccC
Q 041473 327 IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS 406 (488)
Q Consensus 327 ~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 406 (488)
++..+..+..+ ++|++++|.+.. ++ .+..+++|++|++++|.++ .++..+..+++|++|++++|.++.. ..+.+
T Consensus 40 l~~sl~~L~~L-~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~ 113 (198)
T d1m9la_ 40 MDATLSTLKAC-KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK 113 (198)
T ss_dssp CHHHHHHTTTC-CEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred hhhHHhccccc-ceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence 34444444444 555555555552 22 3555566666666666665 4444444445666666666666532 23555
Q ss_pred CCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccc
Q 041473 407 LRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 407 l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+++|+.|++++|+++.... ..+..+++|+.|++++|++...
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 5666666666666653321 3456666666666666666543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.25 E-value=1.7e-13 Score=114.07 Aligned_cols=131 Identities=22% Similarity=0.279 Sum_probs=73.6
Q ss_pred ccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCC
Q 041473 307 LGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386 (488)
Q Consensus 307 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (488)
+..+++|++|++++|.++ .++ .+..++.+ ++|++++|.+. .++..+..++.|++|++++|.++ .++ .+..+++|
T Consensus 44 l~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L-~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L 117 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNL 117 (198)
T ss_dssp HHHTTTCCEEECSEEEES-CCC-CHHHHTTC-CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHS
T ss_pred HhcccccceeECcccCCC-Ccc-cccCCccc-cChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccc
Confidence 334444444444444444 222 23333333 44555555444 22333333456777777777776 332 45667777
Q ss_pred CEEecCCccccccCc-ccccCCCCCCEEeccCcccCCccch----------hhhccccCceeeccCcccc
Q 041473 387 EQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRIPK----------YFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 387 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~~~ 445 (488)
+.|++++|+++.... ..+..+++|+.|++++|++....+. .+..+|+|+.|| +.+++
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence 777777777764322 4567778888888888876543221 256677888775 55554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.6e-08 Score=78.38 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=76.3
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccc--cchhhhccCCCcEEe
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGE--IPFSIYNLSSLSLLD 94 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~ 94 (488)
..+.|++++.... ..+..+..+..++...+... ..+..+..+++|++|++++|.++.. .+..+..+++|++|+
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 4566676553322 12334444555555544433 3445566788899999999888743 234567788888888
Q ss_pred cccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCc-------cccCCCCCceee
Q 041473 95 FPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA-------SISNASNLMRLT 143 (488)
Q Consensus 95 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~l~~L~~L~ 143 (488)
+++|.++ .++........+|+.|++.+|++...... .+..+|+|+.||
T Consensus 98 Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 98 LSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 8888887 66653333456788888888877643321 245667777765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-08 Score=81.49 Aligned_cols=66 Identities=20% Similarity=0.095 Sum_probs=33.4
Q ss_pred ccCCCCCEEecCCccccccC--cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 381 GSCVRLEQLVMNGNFFQGNI--PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
..+++|++|++++|+++... +..+..+++|+.|++++|.++...+-.+....+|+.++++||++..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 34555555555555555322 2334455556666666665554333223333455666666665553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.90 E-value=4.6e-06 Score=66.17 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=54.2
Q ss_pred ccCCCCccEEEccCCcccC----CCccccccCCCCCEEecCCccccccCc----ccccCCCCCCEEeccCcccCCc----
Q 041473 356 FGILKNLGVLDVSENKLSG----EIPNSLGSCVRLEQLVMNGNFFQGNIP----SSFSSLRGIQNLDLSRNNLSGR---- 423 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~---- 423 (488)
+...+.|++|++++|.+.. .+...+...+.|++|++++|.++..+. .++...++|++|++++|.+...
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence 3344567777777776652 223344556777777777777765332 3455567778888877754422
Q ss_pred ---cchhhhccccCceeeccCccc
Q 041473 424 ---IPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 424 ---~~~~l~~l~~L~~L~l~~n~~ 444 (488)
+.+.+...++|+.|+++.+..
T Consensus 120 ~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 120 EMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCccEeeCcCCCc
Confidence 345555667777777766543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.83 E-value=3.4e-06 Score=66.95 Aligned_cols=88 Identities=8% Similarity=0.093 Sum_probs=65.8
Q ss_pred CCCCccEEEccCC-cccCC----CccccccCCCCCEEecCCccccccCc----ccccCCCCCCEEeccCcccCCcc----
Q 041473 358 ILKNLGVLDVSEN-KLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIP----SSFSSLRGIQNLDLSRNNLSGRI---- 424 (488)
Q Consensus 358 ~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~---- 424 (488)
..+.|++|+|+++ .+... +...+...++|++|++++|.+.+... +.+...+.|++|++++|.+....
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4578999999874 45532 33456678899999999998875333 34556789999999999988553
Q ss_pred chhhhccccCceeeccCcccc
Q 041473 425 PKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 425 ~~~l~~l~~L~~L~l~~n~~~ 445 (488)
..++...++|++|++++|...
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSC
T ss_pred HHHHHhCCcCCEEECCCCcCC
Confidence 345666788999999988654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.33 E-value=3.4e-05 Score=60.96 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=18.1
Q ss_pred CCCCccEEEccCCcccCCC----ccccccCCCCCEEecCCcccc
Q 041473 358 ILKNLGVLDVSENKLSGEI----PNSLGSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~ 397 (488)
..+.|++|++++|.+.... ...+...++++.+++++|.+.
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3445555555555443211 122333455555555555444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.24 E-value=1.8e-05 Score=62.65 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=34.8
Q ss_pred CcccccCCccCcEEeccCC-CCCC----CcCccccCCcccccccccccccccc----cchhhcCCCCccEEEeeccccc
Q 041473 8 VPGKLGSLSKLRTLAVHFN-NLSG----EIPSSFGNLSSLEFLSAAVNQFVGQ----IPETLSELKRMRSIGFGANKLS 77 (488)
Q Consensus 8 l~~~l~~~~~L~~L~l~~~-~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~ 77 (488)
+.....+.+.|++|+++++ .++. .+..++...++|+.|++++|.+... +...+...+.++.++++++.+.
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3334445566666666652 3332 1223344555666666666654321 2223445556666666665554
|