Citrus Sinensis ID: 041494

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MMPYKKKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQNQSKPFENKWTRFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHccccccccccccEcccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHcHccHHcccccccccEEEEEccHHEEEcEEEEEc
Coil and Loop (DISEMBL)
mmpykkkdlcrnfqrgscqygerckflhvtqqqpnpfgfgvqnnpqskgtnnynfgnkqnqskpfenkwtrfspitgggvpasrqpdnqpqsanhkcsdpdscKRIIAEDFelerplwkltcyghwknapcdivgdiSYEELRAAAyddakcgssLHSIVERERNLLNSNLMKfdnllrnpytgpcnsalsgqspfaaaspnafsptpqdstapslssfnqvgslpsLEALTKFVDQlfsgplhhqimplanqvpfqipaRLQVLSEQTIFHRQVVVQS
Flexible Loop (DISEMBL)
mmpykkkdlcrnfqRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQNQSKPFENKWTRFSPITGGGVPASRQPDNQpqsanhkcsdpdSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS
Low Complexity Region (SEG)
MMPYKKKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQNQSKPFENKWTRFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQspfaaaspnafsptpQDSTAPSLSSFNQVGSLPSLEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS
Disordered region (IsUnstruct)
********LCRNFQRGSCQYGERCKFLHVTQ***********************************************************************CKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPYT********************************************LEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVV***
Disordered Region (DISOPRED)
*****KK**CRNFQRGSCQYGERCKF*******************************************************************************IIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGS***S**ERERNLLNSNLMKFDN***************************************************************************************VLSEQTIFHRQVVV**
Disordered Region (DISEMBL)
MMPYKKKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQNQSKPFENKWTRFSPITGGGV*******************PDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSPFAA******************SSFNQVGSLPSLEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS
Disordered Region (DISPRO)
*MPYKKKDLCRNFQRGSCQYGERCKFLHVTQQQPNP****V******************************************************KCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPY**************************************QVGSLPSLEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMPYKKKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQNQSKPFENKWTRFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEALTKFVDQLFSGPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9FWS3	435	Zinc finger CCCH domain-c	yes	no	0.763	0.489	0.532	2e-60
Q5Z807	390	Zinc finger CCCH domain-c	yes	no	0.752	0.538	0.405	1e-43
Q94131	335	Pharynx and intestine in	yes	no	0.100	0.083	0.535	0.0002
O74315	475	Nucleoporin-like protein	yes	no	0.290	0.170	0.304	0.0002

>sp|Q9FWS3|C3H16_ARATH Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis thaliana GN=At1g75340 PE=2 SV=2

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 158/229 (68%), Gaps = 16/229 (6%)

Query: 6   KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQSK------GTNNYNFG-N 57
           +K+LCRNFQRGSC+YGE C+FLH  Q +PN PFGFG QN  Q +       +N + FG  
Sbjct: 2   RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGVQ 61

Query: 58  KQNQSKP--FENKWTRF--SPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
               S+P  F+N W+R   +P  GG   +++Q   Q Q A+HKC+DP +CKR++ +DF+ 
Sbjct: 62  SGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKN 121

Query: 114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
           ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G  L SIVERERNL NS + +
Sbjct: 122 ERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAE 181

Query: 174 FDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQ-DSTAPSLSSFNQ 221
           F+N LRNPY G   S  + QSPFAA +P+ F  + Q +S +P+ S FNQ
Sbjct: 182 FENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQ 227

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z807|C3H46_ORYSJ Zinc finger CCCH domain-containing protein 46 OS=Oryza sativa subsp. japonica GN=Os06g0704300 PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 143/259 (55%), Gaps = 49/259 (18%)

Query: 5   KKKDLCRNFQRGSCQYGERCKFLHVT--------QQQPNPFGFGVQNNPQSKGT------ 50
           +++++CRNFQRGSC+YG +C++LH +        Q +PNPFGFG  +  Q + +      
Sbjct: 3   RRQEICRNFQRGSCKYGAQCRYLHASPHQQQQQQQAKPNPFGFGTGSRQQQQPSFGSQFQ 62

Query: 51  ---------NNYNFG---------NKQNQSKPFENKWTRFSPITGGGVPASRQPDNQPQS 92
                    N + FG         N    +KPF+NKW R          A + P  Q Q+
Sbjct: 63  QQQQQQQKPNPFGFGVQGANAQSRNAPGPAKPFQNKWVRDPSAPTKQTEAVQPP--QAQA 120

Query: 93  ANHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKC 152
           A+  C DP SC++ I+EDF+ E P+WKLTCY H +N PC+I GDIS+EELRA AY++ K 
Sbjct: 121 AHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCNIKGDISFEELRAKAYEEGKQ 180

Query: 153 GSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSP-------FAAASPNAFS 205
           G SL SIVE ERNL N+ LM+F NLL        NSA   Q+P       F     N+  
Sbjct: 181 GHSLQSIVEGERNLQNAKLMEFTNLL--------NSARPSQTPSFPTMSSFPEVKNNSSF 232

Query: 206 PTPQDSTAPSLSSFNQVGS 224
              Q +  P  SSF+Q+G+
Sbjct: 233 GASQTNGPPVFSSFSQIGA 251

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans GN=pie-1 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 6   KKDLCRNFQRGSCQYGERCKFLHVTQQQ 33
           ++ +C NF+RG+C+YG RC+F+HV Q Q
Sbjct: 186 RRQICHNFERGNCRYGPRCRFIHVEQMQ 213

Seems to protect germline blastomeres from somatic differentiation. May be a general transcriptional repressor.

Caenorhabditis elegans (taxid: 6239)

>sp|O74315|AMO1_SCHPO Nucleoporin-like protein amo1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amo1 PE=4 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 100 PDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSI 159
           P+   + I +D +  +P W  T Y   +N P    GD+S EELR  AY  AK  +++ + 
Sbjct: 63  PNRRMKDINDDLKNAKPQWPFTGYSVVENLPSIYEGDVSPEELRWWAY-QAKATNNMQAY 121

Query: 160 VERERNLLNSNLMKFDNLLRNP 181
            +R++ L++    K   + R+P
Sbjct: 122 EQRQKQLMDDVEAKAAAVKRSP 143

Involved in the cell polarity process where it is required for the correct termination of microtubule growth at the cell ends during interphase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
359483114	383	PREDICTED: zinc finger CCCH domain-conta	0.813	0.592	0.633	6e-74
255546842	282	nucleic acid binding protein, putative [	0.813	0.804	0.619	5e-73
449485330	360	PREDICTED: zinc finger CCCH domain-conta	0.777	0.602	0.638	9e-72
297745122	394	unnamed protein product [Vitis vinifera]	0.759	0.538	0.611	3e-71
449442787	377	PREDICTED: zinc finger CCCH domain-conta	0.770	0.570	0.613	3e-67
42563228	435	zinc finger CCCH domain-containing prote	0.763	0.489	0.532	1e-58
297842277	441	zinc finger (CCCH-type) family protein [	0.763	0.482	0.554	1e-58
10120449	343	Hypothetical protein [Arabidopsis thalia	0.795	0.647	0.516	2e-58
334183920	398	zinc finger CCCH domain-containing prote	0.763	0.535	0.489	8e-55
356543280	374	PREDICTED: zinc finger CCCH domain-conta	0.759	0.566	0.490	3e-53

>gi|359483114|ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containing protein 16-like [Vitis vinifera]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 152/240 (63%), Positives = 179/240 (74%), Gaps = 13/240 (5%)

Query: 5   KKKDLCRNFQRGSCQYGERCKFLHVTQQQPNP--FGFGVQN-------NPQSKGTNNYNF 55
           +KK+ CRNFQRGSCQYGERCKFLHVTQQQP P   GFG Q        N Q + +N + F
Sbjct: 3   RKKEPCRNFQRGSCQYGERCKFLHVTQQQPKPNVSGFGAQTSSNFQHTNVQQQRSNPFGF 62

Query: 56  GNKQNQ-SKPFENKWTRFSPIT-GGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
           G + N   KPFENKWTRFSP+T G    +SRQ DNQ Q ANHKC+DP+SCKR I EDFE 
Sbjct: 63  GVQSNSLPKPFENKWTRFSPLTTGSSSSSSRQSDNQVQPANHKCTDPESCKRQIVEDFEH 122

Query: 114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
           ERP+WKLTCYGH K+APCDIVGDISYEELR AAYDDA  G SL SIVERER+LLNS L++
Sbjct: 123 ERPIWKLTCYGHCKSAPCDIVGDISYEELRLAAYDDAGRGLSLQSIVERERSLLNSKLIE 182

Query: 174 FDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEALTK 233
           FD+LLR PY  P NS L+ QSP  A +P+A S T Q++T PS SSF+Q+ + P++   T+
Sbjct: 183 FDSLLRKPYAAPPNSTLAIQSP--APNPDASSLTAQNNTPPSASSFSQLSTSPNMGFGTR 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546842|ref|XP_002514479.1| nucleic acid binding protein, putative [Ricinus communis] gi|223546378|gb|EEF47879.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 145/234 (61%), Positives = 180/234 (76%), Gaps = 7/234 (2%)

Query: 6   KKDLCRNFQRGSCQYGERCKFLHVTQQQPNP----FGFGVQNNPQSKGTNNYNFGNK-QN 60
           +K++CRNFQRGSCQYGERCKFLHV  QQ       FGFG Q   Q++ ++ + FG + ++
Sbjct: 4   RKEVCRNFQRGSCQYGERCKFLHVNNQQQQSNNNSFGFGSQQKQQNQSSSPFGFGTQSKS 63

Query: 61  QSKPFENKWTRFSPIT-GGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPLWK 119
            +KPFENKWTRFSPI+     P+SRQPDNQPQ ANHKC+DPDSCKR IAEDF+ E+PLWK
Sbjct: 64  STKPFENKWTRFSPISNAAATPSSRQPDNQPQPANHKCTDPDSCKRQIAEDFQNEKPLWK 123

Query: 120 LTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLR 179
           LTCYGH KN PCDI GD+SYEELRA AYD+AK G +L SIVERERNLL+S L++F+NLLR
Sbjct: 124 LTCYGHSKNGPCDIGGDVSYEELRALAYDEAKHGLTLQSIVERERNLLSSKLIEFENLLR 183

Query: 180 NPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEALTK 233
           NPY  P  SA S QSPF   +PNA  P+ Q++  PS+SSF+Q+G+  ++   T+
Sbjct: 184 NPYAAPPKSAFS-QSPFPGVTPNAILPSGQNNPPPSVSSFSQLGASLNMATRTR 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485330|ref|XP_004157135.1| PREDICTED: zinc finger CCCH domain-containing protein 16-like [Cucumis sativus]

 Score =  276 bits (705), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 145/227 (63%), Positives = 169/227 (74%), Gaps = 10/227 (4%)

Query: 2   MPYKKKDLCRNFQRGSCQYGERCKFLHVTQQ----QPNPFGFGVQNNPQSKGTNNYNFGN 57
           M YKK+  CR+FQRG+CQYGERCKFLH TQQ    +PNPFGFGV NN QSK     +FG+
Sbjct: 1   MHYKKQP-CRDFQRGTCQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAV--ADFGS 57

Query: 58  KQNQSKPFENKWTRFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPL 117
           KQNQ KPFENKWTR  P T  G   SR+PDN   S+NHKC+D +SCKR IAEDF+ ERPL
Sbjct: 58  KQNQYKPFENKWTR--PSTPAGNAQSRKPDNHLPSSNHKCTDGESCKRQIAEDFQNERPL 115

Query: 118 WKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNL 177
           WKLTCYGH KN PCDIVGD+SYEELR  AYD+AK G SL SIVERERNLLNS L +F+ L
Sbjct: 116 WKLTCYGHNKNEPCDIVGDVSYEELRTIAYDEAKRGISLQSIVERERNLLNSKLAEFEGL 175

Query: 178 LRNPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGS 224
           L  PY  P N A   QS F+  +  +  P+ Q++T PSLSSF+Q+G+
Sbjct: 176 LLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNT-PSLSSFSQLGA 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745122|emb|CBI38961.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/242 (61%), Positives = 173/242 (71%), Gaps = 30/242 (12%)

Query: 18  CQYGERCKFLHVTQQQP-------------------------NPFGFGVQNNPQSKGTNN 52
           CQYGERCKFLHVTQQQP                         NPFGFGVQ+N   KGT++
Sbjct: 14  CQYGERCKFLHVTQQQPKPNVSGFGAQTSSNFQHTNVQQQRSNPFGFGVQSNSLPKGTSD 73

Query: 53  YNFGNKQNQSKPFENKWTRFSPIT-GGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDF 111
             FG+KQN  KPFENKWTRFSP+T G    +SRQ DNQ Q ANHKC+DP+SCKR I EDF
Sbjct: 74  --FGSKQNHFKPFENKWTRFSPLTTGSSSSSSRQSDNQVQPANHKCTDPESCKRQIVEDF 131

Query: 112 ELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNL 171
           E ERP+WKLTCYGH K+APCDIVGDISYEELR AAYDDA  G SL SIVERER+LLNS L
Sbjct: 132 EHERPIWKLTCYGHCKSAPCDIVGDISYEELRLAAYDDAGRGLSLQSIVERERSLLNSKL 191

Query: 172 MKFDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEAL 231
           ++FD+LLR PY  P NS L+ QSP  A +P+A S T Q++T PS SSF+Q+ + P++   
Sbjct: 192 IEFDSLLRKPYAAPPNSTLAIQSP--APNPDASSLTAQNNTPPSASSFSQLSTSPNMGFG 249

Query: 232 TK 233
           T+
Sbjct: 250 TR 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442787|ref|XP_004139162.1| PREDICTED: zinc finger CCCH domain-containing protein 16-like [Cucumis sativus]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/225 (61%), Positives = 164/225 (72%), Gaps = 10/225 (4%)

Query: 4   YKKKDLCRNFQRGSCQYGERCKFLHVTQQ----QPNPFGFGVQNNPQSKGTNNYNFGNKQ 59
           Y++ ++C +    SCQYGERCKFLH TQQ    +PNPFGFGV NN QSK     +FG+KQ
Sbjct: 20  YQEVNVC-DRSTESCQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAV--ADFGSKQ 76

Query: 60  NQSKPFENKWTRFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPLWK 119
           NQ KPFENKWTR  P T  G   SR+PDN   S+NHKC+D +SCKR IAEDF+ ERPLWK
Sbjct: 77  NQYKPFENKWTR--PSTPTGNAQSRKPDNHLPSSNHKCTDGESCKRQIAEDFQNERPLWK 134

Query: 120 LTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLR 179
           LTCYGH KN PCDIVGD+SYEELR  AYD+AK G SL SIVERERNLLNS L +F+ LL 
Sbjct: 135 LTCYGHNKNEPCDIVGDVSYEELRTIAYDEAKRGISLQSIVERERNLLNSKLAEFEGLLL 194

Query: 180 NPYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGS 224
            PY  P N A   QS F+  +  +  P+ Q++T PSLSSF+Q+G+
Sbjct: 195 KPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNT-PSLSSFSQLGA 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563228|ref|NP_565108.2| zinc finger CCCH domain-containing protein 16 [Arabidopsis thaliana] gi|229621710|sp|Q9FWS3.2|C3H16_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 16; Short=AtC3H16 gi|332197582|gb|AEE35703.1| zinc finger CCCH domain-containing protein 16 [Arabidopsis thaliana]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 158/229 (68%), Gaps = 16/229 (6%)

Query: 6   KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQSK------GTNNYNFG-N 57
           +K+LCRNFQRGSC+YGE C+FLH  Q +PN PFGFG QN  Q +       +N + FG  
Sbjct: 2   RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGVQ 61

Query: 58  KQNQSKP--FENKWTRF--SPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
               S+P  F+N W+R   +P  GG   +++Q   Q Q A+HKC+DP +CKR++ +DF+ 
Sbjct: 62  SGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKN 121

Query: 114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
           ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G  L SIVERERNL NS + +
Sbjct: 122 ERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAE 181

Query: 174 FDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQ-DSTAPSLSSFNQ 221
           F+N LRNPY G   S  + QSPFAA +P+ F  + Q +S +P+ S FNQ
Sbjct: 182 FENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQ 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842277|ref|XP_002889020.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297334861|gb|EFH65279.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/231 (55%), Positives = 161/231 (69%), Gaps = 18/231 (7%)

Query: 6   KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQS-----KGTNNYNFG--- 56
           +K+LCRNFQRGSC+YGE C+FLH  Q +PN PFGFG Q  PQ        +N + FG   
Sbjct: 2   RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQQQPQQQQQQQNSSNPFGFGVQG 61

Query: 57  ---NKQNQSKPFENKWTRF--SPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDF 111
              ++ NQ +PFEN W+R   +P  GGG  A++Q   Q Q A+HKC+DP +CKR++ +DF
Sbjct: 62  GGSSRPNQFQPFENTWSRTASTPTGGGGAAAAQQAGKQTQPADHKCTDPAACKRVMQDDF 121

Query: 112 ELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNL 171
           + ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G  L SIVERERNL NS +
Sbjct: 122 KNERPMWKLTCYGHWKYFPCDVTGDISYEELRAMAYEEAKRGIPLQSIVERERNLQNSKI 181

Query: 172 MKFDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQ-DSTAPSLSSFNQ 221
            +F+N LRNPY G   S  + QSPFAA +P+ F PT Q +S+ P  S FNQ
Sbjct: 182 AEFENFLRNPYKG---SVTANQSPFAATTPSIFPPTGQINSSPPGFSGFNQ 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10120449|gb|AAG13074.1|AC023754_12 Hypothetical protein [Arabidopsis thaliana]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 16/238 (6%)

Query: 6   KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQSK------GTNNYNFGNK 58
           +K+LCRNFQRGSC+YGE C+FLH  Q +PN PFGFG QN  Q +       +N + FG +
Sbjct: 2   RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGVQ 61

Query: 59  QN-QSKP--FENKWTRF--SPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
               S+P  F+N W+R   +P  GG   +++Q   Q Q A+HKC+DP +CKR++ +DF+ 
Sbjct: 62  SGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKN 121

Query: 114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
           ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G  L SIVERERNL NS + +
Sbjct: 122 ERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAE 181

Query: 174 FDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQ-DSTAPSLSSFNQVGSLPSLEA 230
           F+N LRNPY G   S  + QSPFAA +P+ F  + Q +S +P+ S FNQ  +  +  A
Sbjct: 182 FENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQQTAFSNTNA 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183920|ref|NP_001185401.1| zinc finger CCCH domain-containing protein 16 [Arabidopsis thaliana] gi|332197583|gb|AEE35704.1| zinc finger CCCH domain-containing protein 16 [Arabidopsis thaliana]

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 122/249 (48%), Positives = 159/249 (63%), Gaps = 36/249 (14%)

Query: 6   KKDLCRNFQRGS--------------------CQYGERCKFLHVTQQQPN-PFGFGVQNN 44
           +K+LCRNFQRGS                    C+YGE C+FLH  Q +PN PFGFG QN 
Sbjct: 2   RKELCRNFQRGSLGFVFYILGFNLKSIDVRRCCRYGENCRFLHPQQAKPNNPFGFGTQNQ 61

Query: 45  PQSK------GTNNYNFGNKQN-QSKP--FENKWTRF--SPITGGGVPASRQPDNQPQSA 93
            Q +       +N + FG +    S+P  F+N W+R   +P  GG   +++Q   Q Q A
Sbjct: 62  QQQQQQQQQNSSNPFGFGVQSGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPA 121

Query: 94  NHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCG 153
           +HKC+DP +CKR++ +DF+ ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G
Sbjct: 122 DHKCTDPAACKRVMQDDFKNERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRG 181

Query: 154 SSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQ-DST 212
             L SIVERERNL NS + +F+N LRNPY G   S  + QSPFAA +P+ F  + Q +S 
Sbjct: 182 IPLQSIVERERNLQNSKIAEFENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSP 238

Query: 213 APSLSSFNQ 221
           +P+ S FNQ
Sbjct: 239 SPAFSGFNQ 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543280|ref|XP_003540090.1| PREDICTED: zinc finger CCCH domain-containing protein 16-like [Glycine max]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 154/255 (60%), Gaps = 43/255 (16%)

Query: 7   KDLCRNFQRGSCQYGERCKFLHVTQQQP-------------------------------- 34
           +D+CRNFQRGSCQYGERC++LHV QQ+                                 
Sbjct: 2   RDICRNFQRGSCQYGERCRYLHVQQQRKPNVNGFGGQSSSHQQQNTNPFGFGSGSGSQQQ 61

Query: 35  ---NPFGFGVQNNPQSKGTNNYNFGNKQNQSKPFENKWTR-FSPITGGGVPASRQPDNQP 90
              NPFGFG  N+ Q  G  +    NK NQ KPFENKW R  S     GV +   P    
Sbjct: 62  QKGNPFGFGKHNSSQLNGGPHSE--NKPNQYKPFENKWNRQSSKPQQNGVKSENNPK--- 116

Query: 91  QSANHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDA 150
           QS +H C+DP++CKR IA DFE E+PLW LTCY H K APCDIVGDISYEELRA+AY+DA
Sbjct: 117 QSEHHICTDPENCKRQIAVDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRASAYEDA 176

Query: 151 KCGSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSPFA-AASPNAFSPTPQ 209
             G SL SIVE+ERN+L S L++FD LL  PY  P +S+L  Q+P +  A+ N FS T Q
Sbjct: 177 NRGMSLQSIVEKERNILKSKLVEFDKLLSEPYKIPISSSLGSQTPQSIGANANPFS-TSQ 235

Query: 210 DSTAPSLSSFNQVGS 224
            +   S+SSF+Q+ +
Sbjct: 236 SNGPLSVSSFSQLST 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2018452	435	AT1G75340 [Arabidopsis thalian	0.763	0.489	0.519	1.4e-57
ASPGD|ASPL0000075245	512	nup42 [Emericella nidulans (ta	0.448	0.244	0.301	4e-05

TAIR|locus:2018452 AT1G75340 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 119/229 (51%), Positives = 150/229 (65%)

Query:     6 KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQSK------GTNNYNFGNK 58
             +K+LCRNFQRGSC+YGE C+FLH  Q +PN PFGFG QN  Q +       +N + FG +
Sbjct:     2 RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGVQ 61

Query:    59 QN-QSKP--FENKWTRF-SPITGGGVPAS-RQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
                 S+P  F+N W+R  S  TGGG  AS +Q   Q Q A+HKC+DP +CKR++ +DF+ 
Sbjct:    62 SGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKN 121

Query:   114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
             ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G  L SIVERERNL NS + +
Sbjct:   122 ERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAE 181

Query:   174 FDNLLRNPYTGPCNSALSGQXXXXXXXXXXXXXXXQ-DSTAPSLSSFNQ 221
             F+N LRNPY G   S  + Q               Q +S +P+ S FNQ
Sbjct:   182 FENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQ 227

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

ASPGD|ASPL0000075245 nup42 [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 41/136 (30%), Positives = 66/136 (48%)

Query:    55 FGNK-QNQSKPFENKWT---RFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAED 110
             FG++ +N+    +  +T   RF  ++ GG   SR    Q Q +  + ++       I  D
Sbjct:    14 FGDRCKNEHPRSQQTFTGGNRFGALSAGGGFNSRGFSGQNQQSKQEPANYGITTADIKAD 73

Query:   111 FELE--RPLWKLTCYGHWKNAPCDIVG----DISYEELRAAAYDDAKCGSSLHSIVERER 164
                   RP+W  +CYG  KNAP  + G    + S+EELR   Y+ A  G+   +I E E 
Sbjct:    74 LTAGEGRPIWVFSCYGPGKNAPRQLFGGPQREQSFEELRLRHYEAAAAGNPGPAIQEAE- 132

Query:   165 NLLNSNLMKFDNLLRN 180
             N+ N  + + + +LRN
Sbjct:   133 NMYNEAVNQMEVVLRN 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      279       264   0.00092  114 3  11 22  0.49    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.59u 0.09s 25.68t   Elapsed:  00:00:01
  Total cpu time:  25.59u 0.09s 25.68t   Elapsed:  00:00:01
  Start:  Fri May 10 16:13:01 2013   End:  Fri May 10 16:13:02 2013

GO:0034399 "nuclear periphery" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0071963 "establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0030951 "establishment or maintenance of microtubule cytoskeleton polarity" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	6e-06

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 5  KKKDLCRNFQR-GSCQYGERCKFLHV 29
           K +LCR F R G+C+YG+RCKF H 
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 6  KKDLCRNFQRGSCQYGERCKFLHV 29
          K +LC+ F+RG C  G+RCKF H 
Sbjct: 3  KTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.3
smart00356	27	ZnF_C3H1 zinc finger.	97.98
KOG2185	486	consensus Predicted RNA-processing protein, contai	97.65
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	96.7
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.35
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	96.02
KOG1040	325	consensus Polyadenylation factor I complex, subuni	93.81
COG5152	259	Uncharacterized conserved protein, contains RING a	93.17
KOG1763	343	consensus Uncharacterized conserved protein, conta	92.55
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	91.01
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	83.75
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	80.51

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.30  E-value=1.8e-07  Score=59.20  Aligned_cols=24  Identities=50%  Similarity=1.259  Sum_probs=19.2

Q ss_pred             Cccccccccc-ccccCCCcccccCC
Q 041494            6 KKDLCRNFQR-GSCQYGERCKFLHV   29 (279)
Q Consensus         6 ~~~vCrfF~~-G~CrfG~~Crf~H~   29 (279)
                      ++.+|++|++ |.|+||++|+|.|+
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccccChhhccCCccCCCCCcCccCC
Confidence            4689999998 99999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=97.98  E-value=3.4e-06  Score=51.67  Aligned_cols=25  Identities=56%  Similarity=1.271  Sum_probs=22.1

Q ss_pred             CcccccccccccccCCCcccccCCC
Q 041494            6 KKDLCRNFQRGSCQYGERCKFLHVT   30 (279)
Q Consensus         6 ~~~vCrfF~~G~CrfG~~Crf~H~~   30 (279)
                      +..+|++|+.|.|++|++|+|.|..
T Consensus         3 k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCccCCCCCCCCCcCCCCcC
Confidence            3458999999999999999999973

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=97.65  E-value=1.4e-05  Score=78.99  Aligned_cols=29  Identities=31%  Similarity=0.778  Sum_probs=26.4

Q ss_pred             CCCcccccccccccccCCCcccccCCCCC
Q 041494            4 YKKKDLCRNFQRGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         4 ~~~~~vCrfF~~G~CrfG~~Crf~H~~~~   32 (279)
                      .+.|.+|+||+.|+||||.+|||.|....
T Consensus       137 h~sMkpC~ffLeg~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  137 HESMKPCKFFLEGRCRFGENCRFSHGLDV  165 (486)
T ss_pred             chhhccchHhhccccccCcccccccCccc
Confidence            37899999999999999999999998764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=8.6e-05  Score=71.94  Aligned_cols=25  Identities=28%  Similarity=1.030  Sum_probs=24.1

Q ss_pred             ccccccccccccCCCcccccCCCCC
Q 041494            8 DLCRNFQRGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         8 ~vCrfF~~G~CrfG~~Crf~H~~~~   32 (279)
                      +||+||++|.|+||+.|||+|..+.
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhcccccccccceeeeeccCch
Confidence            9999999999999999999999984

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=96.70  E-value=0.0007  Score=63.13  Aligned_cols=27  Identities=48%  Similarity=1.190  Sum_probs=24.3

Q ss_pred             Cccccccccc-ccccCCCcccccCCCCC
Q 041494            6 KKDLCRNFQR-GSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         6 ~~~vCrfF~~-G~CrfG~~Crf~H~~~~   32 (279)
                      +.++|.+|++ |.|+||.+|+|.|+...
T Consensus       176 kt~lC~~f~~tG~C~yG~rC~F~H~~~~  203 (332)
T KOG1677|consen  176 KTKLCPKFQKTGLCKYGSRCRFIHGEPE  203 (332)
T ss_pred             CCcCCCccccCCCCCCCCcCeecCCCcc
Confidence            4578999997 99999999999999874

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.35  E-value=0.0018  Score=38.22  Aligned_cols=19  Identities=32%  Similarity=0.761  Sum_probs=17.2

Q ss_pred             cccccccccccCCCcccccCC
Q 041494            9 LCRNFQRGSCQYGERCKFLHV   29 (279)
Q Consensus         9 vCrfF~~G~CrfG~~Crf~H~   29 (279)
                      +||||..  |++|++|.|.|+
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            5998877  999999999996

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=96.02  E-value=0.0021  Score=62.15  Aligned_cols=26  Identities=42%  Similarity=1.055  Sum_probs=24.0

Q ss_pred             cccccccccccccCCCc-ccccCCCCC
Q 041494            7 KDLCRNFQRGSCQYGER-CKFLHVTQQ   32 (279)
Q Consensus         7 ~~vCrfF~~G~CrfG~~-Crf~H~~~~   32 (279)
                      ..|||-||+|.|.-||+ |||.|+..+
T Consensus        37 ~eVCReF~rn~C~R~d~~CkfaHP~~~   63 (331)
T KOG2494|consen   37 LEVCREFLRNTCSRGDRECKFAHPPKN   63 (331)
T ss_pred             HHHHHHHHhccccCCCccccccCCCCC
Confidence            46999999999999999 999999874

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=93.81  E-value=0.022  Score=55.07  Aligned_cols=27  Identities=37%  Similarity=0.938  Sum_probs=24.7

Q ss_pred             CCCcccccccccccccCCCcccccCCC
Q 041494            4 YKKKDLCRNFQRGSCQYGERCKFLHVT   30 (279)
Q Consensus         4 ~~~~~vCrfF~~G~CrfG~~Crf~H~~   30 (279)
                      .+..+|||||++|.|..||.|-|.|..
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~  100 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY  100 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh
Confidence            457899999999999999999999975

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.17  E-value=0.032  Score=51.61  Aligned_cols=27  Identities=41%  Similarity=1.134  Sum_probs=23.3

Q ss_pred             Ccccccccc-cccccCCCcccccCCCCC
Q 041494            6 KKDLCRNFQ-RGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         6 ~~~vCrfF~-~G~CrfG~~Crf~H~~~~   32 (279)
                      ...||+-|. .|+|-||+.|+|.|.+..
T Consensus       140 qpdVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         140 QPDVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             CcccccchhhcccccCCchhhhhhhhhh
Confidence            346899887 799999999999999874

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=92.55  E-value=0.038  Score=53.36  Aligned_cols=28  Identities=36%  Similarity=0.816  Sum_probs=24.8

Q ss_pred             CCcccccccccccccCCCcccccCCCCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~~   32 (279)
                      ...+||-||.+|.|.-|++|+|.|....
T Consensus        90 PKSvvCafFk~g~C~KG~kCKFsHdl~~  117 (343)
T KOG1763|consen   90 PKSVVCAFFKQGTCTKGDKCKFSHDLAV  117 (343)
T ss_pred             chHHHHHHHhccCCCCCCcccccchHHH
Confidence            3457899999999999999999998764

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=91.01  E-value=0.096  Score=48.95  Aligned_cols=28  Identities=46%  Similarity=1.133  Sum_probs=24.1

Q ss_pred             CCcccccccc-cccccC-CCcccccCCCCC
Q 041494            5 KKKDLCRNFQ-RGSCQY-GERCKFLHVTQQ   32 (279)
Q Consensus         5 ~~~~vCrfF~-~G~Crf-G~~Crf~H~~~~   32 (279)
                      .+..+|++|. .|.|+| |++|||.|....
T Consensus       130 ~kt~lc~~~~~~g~c~y~ge~crfah~~~e  159 (332)
T KOG1677|consen  130 YKTPLCRSFRKSGTCKYRGEQCRFAHGLEE  159 (332)
T ss_pred             ccCCcceeeecCccccccCchhhhcCCccc
Confidence            3557899999 589999 999999998775

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.75  E-value=0.36  Score=46.65  Aligned_cols=26  Identities=42%  Similarity=1.171  Sum_probs=22.7

Q ss_pred             cccccccc-cccccCCCcccccCCCCC
Q 041494            7 KDLCRNFQ-RGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         7 ~~vCrfF~-~G~CrfG~~Crf~H~~~~   32 (279)
                      ..||+=|- .|.|-||++|+|.|.+..
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~D  212 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSD  212 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhh
Confidence            35899887 799999999999999764

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=80.51  E-value=0.93  Score=43.47  Aligned_cols=28  Identities=36%  Similarity=0.758  Sum_probs=24.4

Q ss_pred             CCcccccccccccccCCCcccccCCCCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~~   32 (279)
                      .+.++|++|++|+|.-|.+|-|.|...-
T Consensus       102 ~s~V~c~~~~~g~c~s~~~c~~lh~~d~  129 (285)
T COG5084         102 SSSVVCKFFLRGLCKSGFSCEFLHEYDL  129 (285)
T ss_pred             cCCcccchhccccCcCCCccccccCCCc
Confidence            4668899999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	7e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	7e-05

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 2  MPYKKKDLCRNFQRGSCQYGERCKFLH 28
          M  +K  +C+++ RG C+ G++C+FLH
Sbjct: 11 MSGEKTVVCKHWLRGLCKKGDQCEFLH 37

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 1  MMPYKKKDLCRNFQR-GSCQYGERCKFLH 28
            P  K +LC  F+  G C YG RC F+H
Sbjct: 44 RHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 4  YKKKDLCRNFQR-GSCQYGERCKFLH 28
          YK + LCR +   G C+YG +C+F H
Sbjct: 10 YKTE-LCRTYSESGRCRYGAKCQFAH 34

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 40.1 bits (93), Expect = 7e-05
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 5  KKKDLCRNFQRGSCQYGERCKFLH 28
          KK++LC+ +  G C   E C ++H
Sbjct: 11 KKRELCKFYITGFCARAENCPYMH 34

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 10/24 (41%), Positives = 19/24 (79%)

Query: 5  KKKDLCRNFQRGSCQYGERCKFLH 28
          +K  +C+++ RG C+ G++C+FLH
Sbjct: 8  EKTVVCKHWLRGLCKKGDQCEFLH 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.88
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.85
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.77
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	97.65
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.54
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.47
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.45
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.37
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.23
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.14
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.08
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.01
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	96.94
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.92
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.89
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	95.74
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	95.55
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	94.75
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	90.67
3mmy_B	56	Nuclear pore complex protein NUP98; mRNA export, n	89.93
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	85.47
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	81.12

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.88  E-value=3e-06  Score=63.54  Aligned_cols=27  Identities=37%  Similarity=0.968  Sum_probs=24.8

Q ss_pred             CCcccccccccccccCCCcccccCCCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~   31 (279)
                      ++.+||+||++|.|++|+.|+|.|...
T Consensus        14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~   40 (72)
T 2rhk_C           14 EKTVVCKHWLRGLCKKGDQCEFLHEYD   40 (72)
T ss_dssp             CCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred             CcCeeCHHHhcCCCCCCCCCCCccccc
Confidence            567899999999999999999999965

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=5.1e-06  Score=62.57  Aligned_cols=29  Identities=34%  Similarity=0.844  Sum_probs=25.4

Q ss_pred             CCCcccccccccccccCCCcccccCCCCC
Q 041494            4 YKKKDLCRNFQRGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         4 ~~~~~vCrfF~~G~CrfG~~Crf~H~~~~   32 (279)
                      ..+.+||+||++|.|++|++|+|.|....
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred             CCcceeCHhHccCcCCCCCCCCCcccccc
Confidence            35678999999999999999999998753

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.77  E-value=7.5e-06  Score=64.67  Aligned_cols=25  Identities=36%  Similarity=0.921  Sum_probs=23.6

Q ss_pred             CCcccccccccccccCCCcccccCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHV   29 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~   29 (279)
                      +++.+|+||++|.|++|++|+|.|.
T Consensus        11 ~k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCCccCcccccCcCCCCCCCCCCCC
Confidence            5778999999999999999999998

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=97.65  E-value=1.8e-05  Score=58.45  Aligned_cols=28  Identities=39%  Similarity=1.036  Sum_probs=24.3

Q ss_pred             CCcccccccc-cccccCCCcccccCCCCC
Q 041494            5 KKKDLCRNFQ-RGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         5 ~~~~vCrfF~-~G~CrfG~~Crf~H~~~~   32 (279)
                      .+..+|++|+ .|.|+||++|+|.|....
T Consensus        10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e   38 (77)
T 1m9o_A           10 YKTELCRTYSESGRCRYGAKCQFAHGLGE   38 (77)
T ss_dssp             CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence            4568999996 899999999999998753

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=1.4e-05  Score=63.33  Aligned_cols=29  Identities=45%  Similarity=1.016  Sum_probs=25.5

Q ss_pred             CCCcccccccccccccCCC-cccccCCCCC
Q 041494            4 YKKKDLCRNFQRGSCQYGE-RCKFLHVTQQ   32 (279)
Q Consensus         4 ~~~~~vCrfF~~G~CrfG~-~Crf~H~~~~   32 (279)
                      .++..|||+|++|.|+.|+ .|+|.|+...
T Consensus        17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~   46 (98)
T 2e5s_A           17 TDKLEVCREFQRGNCARGETDCRFAHPADS   46 (98)
T ss_dssp             SSEEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred             hhhhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence            3567899999999999999 8999999763

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.47  E-value=2.8e-05  Score=57.61  Aligned_cols=28  Identities=39%  Similarity=1.032  Sum_probs=24.3

Q ss_pred             CCCcccccccccccccCCC-cccccCCCC
Q 041494            4 YKKKDLCRNFQRGSCQYGE-RCKFLHVTQ   31 (279)
Q Consensus         4 ~~~~~vCrfF~~G~CrfG~-~Crf~H~~~   31 (279)
                      ..+..||++|++|.|+.|+ .|+|.|+..
T Consensus         3 ~~k~~vC~~f~~G~C~rg~~~C~f~H~~~   31 (70)
T 3d2q_A            3 TDRLEVCREYQRGNCNRGENDCRFAHPAD   31 (70)
T ss_dssp             -CEEEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred             cccchhCHHHhcCCCCCCCCCCCCccCcc
Confidence            3567899999999999999 599999864

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=3e-05  Score=58.69  Aligned_cols=23  Identities=35%  Similarity=0.969  Sum_probs=21.7

Q ss_pred             ccccccccccccCCCcccccCCC
Q 041494            8 DLCRNFQRGSCQYGERCKFLHVT   30 (279)
Q Consensus         8 ~vCrfF~~G~CrfG~~Crf~H~~   30 (279)
                      .+|+.|+.|.|.||++|+|+|..
T Consensus        21 ~LC~~~~~G~C~~G~~C~FAHG~   43 (69)
T 2d9m_A           21 SICDRYMNGTCPEGNSCKFAHGN   43 (69)
T ss_dssp             SBCHHHHHSCCSSCSSCSSBSSH
T ss_pred             ccCcccCcCCCCCCCccCCcCCH
Confidence            79999999999999999999974

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.37  E-value=5.8e-05  Score=58.27  Aligned_cols=27  Identities=41%  Similarity=0.976  Sum_probs=24.4

Q ss_pred             CCcccccccccccccCCC-cccccCCCC
Q 041494            5 KKKDLCRNFQRGSCQYGE-RCKFLHVTQ   31 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~-~Crf~H~~~   31 (279)
                      ...+||++|++|.|.-|+ .|+|+|+..
T Consensus         7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~   34 (83)
T 3d2n_A            7 LTLEVCREFQRGTCSRPDTECKFAHPSK   34 (83)
T ss_dssp             GEEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred             ccchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence            356899999999999997 999999976

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.23  E-value=0.00011  Score=57.50  Aligned_cols=27  Identities=41%  Similarity=1.009  Sum_probs=24.5

Q ss_pred             CcccccccccccccCCC-cccccCCCCC
Q 041494            6 KKDLCRNFQRGSCQYGE-RCKFLHVTQQ   32 (279)
Q Consensus         6 ~~~vCrfF~~G~CrfG~-~Crf~H~~~~   32 (279)
                      ...|||.|++|.|.-|+ .|||+|+...
T Consensus        16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A           16 TLEVCRQFQRGTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred             hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence            46799999999999999 9999999763

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.14  E-value=0.00012  Score=54.97  Aligned_cols=27  Identities=30%  Similarity=0.814  Sum_probs=24.2

Q ss_pred             CCccccccccc-ccccCCCcccccCCCCC
Q 041494            5 KKKDLCRNFQR-GSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         5 ~~~~vCrfF~~-G~CrfG~~Crf~H~~~~   32 (279)
                      .++.+|+||++ |.|. |++|+|.|..+.
T Consensus        36 ~~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A           36 TKMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             TTSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CcCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            35679999999 9999 999999999874

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.08  E-value=0.00016  Score=56.99  Aligned_cols=25  Identities=28%  Similarity=0.697  Sum_probs=22.4

Q ss_pred             cccccccc-cccccCCCcccccCCCC
Q 041494            7 KDLCRNFQ-RGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         7 ~~vCrfF~-~G~CrfG~~Crf~H~~~   31 (279)
                      ..+|+||+ .|.|+||++|+|.|...
T Consensus        36 ~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            47899995 89999999999999964

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.01  E-value=0.0002  Score=53.59  Aligned_cols=27  Identities=30%  Similarity=0.807  Sum_probs=24.4

Q ss_pred             CCccccccccc-ccccCCCcccccCCCCC
Q 041494            5 KKKDLCRNFQR-GSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         5 ~~~~vCrfF~~-G~CrfG~~Crf~H~~~~   32 (279)
                      .++.+|+||++ |.|.+ ++|+|.|+.+.
T Consensus        42 ~~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           42 TKMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            45789999999 99999 99999999874

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=96.94  E-value=0.00017  Score=53.35  Aligned_cols=26  Identities=23%  Similarity=0.807  Sum_probs=23.5

Q ss_pred             CCcccccccccccccCCCcccccCCCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~   31 (279)
                      .++.+|++|++|+|..| .|+|.|+.+
T Consensus        40 ~~~~vC~~flkG~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A           40 NTVTVCMDYIKGRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             TEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred             CcceeccccCcCCCCCC-CcCeeCCHH
Confidence            46789999999999999 999999864

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.92  E-value=0.00014  Score=53.59  Aligned_cols=25  Identities=44%  Similarity=1.190  Sum_probs=0.0

Q ss_pred             ccccccc-ccccccCCCcccccCCCC
Q 041494            7 KDLCRNF-QRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         7 ~~vCrfF-~~G~CrfG~~Crf~H~~~   31 (279)
                      ..+|++| +.|.|+||++|+|.|...
T Consensus        50 ~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           50 TELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             --------------------------
T ss_pred             CCcccchhhCcCCCCcCcCCCCCCCC
Confidence            4689855 589999999999999854

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.89  E-value=0.00019  Score=56.86  Aligned_cols=26  Identities=23%  Similarity=0.792  Sum_probs=24.0

Q ss_pred             CCcccccccccccccCCCcccccCCCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~   31 (279)
                      .++.+|++|++|+|..| +|+|.|+.+
T Consensus        54 ~~~~vC~~flkG~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           54 NTVTVCMDYIKGRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             CEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             CccccchhhccCCCCCC-CcCccCChH
Confidence            57789999999999999 999999975

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=95.74  E-value=0.0025  Score=57.32  Aligned_cols=26  Identities=31%  Similarity=0.770  Sum_probs=23.9

Q ss_pred             cccccccccccccCCCcccccCCCCC
Q 041494            7 KDLCRNFQRGSCQYGERCKFLHVTQQ   32 (279)
Q Consensus         7 ~~vCrfF~~G~CrfG~~Crf~H~~~~   32 (279)
                      .-+|-||.+|.|+.|+.|.|.|..|.
T Consensus        70 ~~~C~ffakG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred             CeEcCccccCCCCCCCCCCccCCCCC
Confidence            35899999999999999999999885

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=95.55  E-value=0.0034  Score=48.32  Aligned_cols=25  Identities=28%  Similarity=0.647  Sum_probs=23.0

Q ss_pred             CcccccccccccccCCCcccccCCCC
Q 041494            6 KKDLCRNFQRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         6 ~~~vCrfF~~G~CrfG~~Crf~H~~~   31 (279)
                      .+.+|++|++|+|..+ .|+|.|+..
T Consensus        42 ~~~vC~dflkG~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A           42 RVIACFDSLKGRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             EEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred             ceeehhHhhhccccCC-CcceeCChH
Confidence            4789999999999999 899999975

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=94.75  E-value=0.0069  Score=47.29  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=23.2

Q ss_pred             CcccccccccccccCCCcccccCCCC
Q 041494            6 KKDLCRNFQRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         6 ~~~vCrfF~~G~CrfG~~Crf~H~~~   31 (279)
                      .+.+|..|++|+|..+ .|+|.|+.+
T Consensus        50 ~~~vC~dflkG~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           50 RVIACFDSLKGRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             BEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             ceeeehhhhhCcCCCC-CcceecCHH
Confidence            5789999999999998 899999976

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=90.67  E-value=0.069  Score=48.38  Aligned_cols=25  Identities=32%  Similarity=0.782  Sum_probs=18.6

Q ss_pred             CcccccccccccccCCCcccccCCCC
Q 041494            6 KKDLCRNFQRGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         6 ~~~vCrfF~~G~CrfG~~Crf~H~~~   31 (279)
                      +.-||++|++|.|+| .+|+-.|...
T Consensus       174 kLHIC~~Fl~G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          174 RLHICEHFTRGNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             SBCSCHHHHTTCCCC-SSCSSCCCTT
T ss_pred             ceeccchhhcCCcCC-CCccCccCcc
Confidence            345788888888888 6888888754

>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=89.93  E-value=0.13  Score=37.51  Aligned_cols=15  Identities=40%  Similarity=0.503  Sum_probs=13.2

Q ss_pred             CCCCHHHHHHHHHHH
Q 041494          135 GDISYEELRAAAYDD  149 (279)
Q Consensus       135 GD~SpEELRl~yYea  149 (279)
                      .+.|+|||||+=|++
T Consensus        39 ~~~S~EELR~eDY~~   53 (56)
T 3mmy_B           39 ESKSLEELRLEDYQA   53 (56)
T ss_dssp             TTSCHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHc
Confidence            389999999999975

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=85.47  E-value=0.23  Score=35.41  Aligned_cols=26  Identities=31%  Similarity=0.696  Sum_probs=22.7

Q ss_pred             Ccccccccc-cccccCCCcccccCCCC
Q 041494            6 KKDLCRNFQ-RGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         6 ~~~vCrfF~-~G~CrfG~~Crf~H~~~   31 (279)
                      ...||+-|- -|+|++|.+|.+.|...
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCC
Confidence            457899988 69999999999999764

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=81.12  E-value=0.47  Score=42.96  Aligned_cols=25  Identities=32%  Similarity=0.703  Sum_probs=20.7

Q ss_pred             ccccccccccccC----CCcccccCCCCC
Q 041494            8 DLCRNFQRGSCQY----GERCKFLHVTQQ   32 (279)
Q Consensus         8 ~vCrfF~~G~Crf----G~~Crf~H~~~~   32 (279)
                      -+||||+-|+|+|    +..|||.|....
T Consensus        90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s  118 (229)
T 3u9g_A           90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLS  118 (229)
T ss_dssp             CCCHHHHTTCCGGGTCCSSCCSSCSCTTC
T ss_pred             eechhhhcCcCCcccCCCCCcccccccCc
Confidence            4799999999943    478999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	2e-05
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	7e-05

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 2/26 (7%)

Query: 4  YKKKDLCRNFQR-GSCQYGERCKFLH 28
          YK + LCR F+  G+C+YGE+C+F H
Sbjct: 4  YKTE-LCRPFEESGTCKYGEKCQFAH 28

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 3  PYKKKDLCRNF-QRGSCQYGERCKFLH 28
          P  K +LCR F   G C YG RC F+H
Sbjct: 4  PKYKTELCRTFHTIGFCPYGPRCHFIH 30

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 4  YKKKDLCRNFQR-GSCQYGERCKFLHVTQ--QQPN 35
          YK + LCR +   G C+YG +C+F H     +Q N
Sbjct: 7  YKTE-LCRTYSESGRCRYGAKCQFAHGLGELRQAN 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.91
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.8
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.72
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.66
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.22

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.8e-06  Score=53.68  Aligned_cols=25  Identities=36%  Similarity=0.921  Sum_probs=23.6

Q ss_pred             CCcccccccccccccCCCcccccCC
Q 041494            5 KKKDLCRNFQRGSCQYGERCKFLHV   29 (279)
Q Consensus         5 ~~~~vCrfF~~G~CrfG~~Crf~H~   29 (279)
                      +++.+|+||++|.|.-|+.|.|.|.
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccC
Confidence            6789999999999999999999995

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=3.6e-06  Score=55.72  Aligned_cols=26  Identities=42%  Similarity=1.128  Sum_probs=22.4

Q ss_pred             Cccccccccc-ccccCCCcccccCCCC
Q 041494            6 KKDLCRNFQR-GSCQYGERCKFLHVTQ   31 (279)
Q Consensus         6 ~~~vCrfF~~-G~CrfG~~Crf~H~~~   31 (279)
                      +..+|++|++ |.|+||++|+|+|...
T Consensus         8 KT~lC~~~~~~g~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_           8 KTELCRTYSESGRCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred             ccccChhhhcCCcCCCCCCCCCCCCHH
Confidence            4578999985 8999999999999754

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3e-06  Score=54.97  Aligned_cols=26  Identities=50%  Similarity=1.230  Sum_probs=22.3

Q ss_pred             Ccccccccc-cccccCCCcccccCCCC
Q 041494            6 KKDLCRNFQ-RGSCQYGERCKFLHVTQ   31 (279)
Q Consensus         6 ~~~vCrfF~-~G~CrfG~~Crf~H~~~   31 (279)
                      +..+|++|. .|.|+||++|+|+|...
T Consensus         5 KT~lC~~~~~~g~C~~G~~C~FAHg~~   31 (36)
T d1rgoa1           5 KTELCRPFEESGTCKYGEKCQFAHGFH   31 (36)
T ss_dssp             TSSBCHHHHHHSCCTTGGGCSSBSSGG
T ss_pred             chhhCcchhcCCcCCCCCcCCCcCCHH
Confidence            457899997 59999999999999754

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=4.2e-06  Score=53.78  Aligned_cols=25  Identities=52%  Similarity=1.261  Sum_probs=22.1

Q ss_pred             Cccccccccc-ccccCCCcccccCCC
Q 041494            6 KKDLCRNFQR-GSCQYGERCKFLHVT   30 (279)
Q Consensus         6 ~~~vCrfF~~-G~CrfG~~Crf~H~~   30 (279)
                      +..+|+.|.. |.|.||++|+|+|..
T Consensus         7 KT~lC~~f~~~g~C~yG~~C~FaHg~   32 (34)
T d1rgoa2           7 KTELCRTFHTIGFCPYGPRCHFIHNA   32 (34)
T ss_dssp             TCSBCHHHHHHSCCTTGGGCSSBCCS
T ss_pred             cchhccccCCCCcCCCCCcccCcCCC
Confidence            4578999985 999999999999974

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0028  Score=44.50  Aligned_cols=22  Identities=27%  Similarity=0.760  Sum_probs=19.7

Q ss_pred             cccccccc-cccCCCcccccCCC
Q 041494            9 LCRNFQRG-SCQYGERCKFLHVT   30 (279)
Q Consensus         9 vCrfF~~G-~CrfG~~Crf~H~~   30 (279)
                      .|+||-.| .|--|++|+|.|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59999976 99999999999953