Citrus Sinensis ID: 041497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKGI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccHHHHcccccccEEcccccccccccHHHHcccccccEEcccccccccccccccccccccccccccccEEcccHHHHcccccccEEEcccccccccccHHHHHHccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccHHHHccccccccEEEEccEEEEccccccccccccccccccccEEccccccccccEEccccEEEEcccHHcccccccccccccccccEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEcccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHcHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccccccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccHHHHcccccccEEEEccccccccccHHHcccHHHHHHEEcccccccccccHHHcccccccEEEccccccccccccccEEEEEccccccccccccHccccccEEEEcccccccccccccHcccccccEEEcccccccccccHHHcccHHHHHHHccccccccccccHHHcccccccEEEccccccccccccccccccEEEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHcccHHcccc
Coil and Loop (DISEMBL)
mksqlqdplgvtsswnnsinlcqwtgvtcghrhqrvigldlrhqsiggflspfvgnlSFLRSINLANnsfraeiphevgnlfrlqnltltnnyfsgkiptnlsrcsnlvkfeasnnklagespaEIGNLLKFQLLNIAENhlrgqlpasignLSALQEINVngnrlggripstrsHVRNLISFNvglnqfsgmfppinnisslEYIFIHRNiyhgslpldigvnlpnlRFFIISGNNLTGSLQDSLsnatnlqkldinrnlfsgkvsinfgglqnlswlnlgknnlgtrtanDLDFITLLTNCTKLEVLVLdsnrfgavlpfslANLSTTmtgiafgnnqisgfipdgIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDllgnippsigncknlillttrknkpsgtmprqlprIITLSVLLNLSdnllsghfpaevgklknlvsldissnmfsgeipttlgctsLEYLCmqdnsftgsipstlsslKSITEldlsrnnlsghipqylenlSFLSFLNLSYnhfeskslfvwpfvdeikgi
Flexible Loop (DISEMBL)
mksqlqdplgvtsswnNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTtrknkpsgtmprqLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEskslfvwpfvdeikgi
Low Complexity Region (SEG)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITlsvllnlsdnllsGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYlenlsflsflnlsynhfESKSLFVWPFVDEIKGI
Disordered region (IsUnstruct)
**********VTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVK*****************NLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTR**********QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI***
Disordered Region (DISOPRED)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKGI
Disordered Region (DISEMBL)
**********VTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKGI
Disordered Region (DISPRO)
*****QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	568	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.954	0.525	0.447	1e-117
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.968	0.544	0.427	1e-109
Q9SD62	1025	Putative receptor-like pr	no	no	0.945	0.523	0.459	1e-108
Q9FL28	1173	LRR receptor-like serine/	no	no	0.952	0.461	0.322	1e-69
O49318	1124	Probable leucine-rich rep	no	no	0.948	0.479	0.315	7e-64
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.869	0.395	0.340	2e-61
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.952	0.539	0.326	2e-61
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.845	0.383	0.323	3e-61
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.950	0.490	0.318	4e-61
Q9LHP4	1141	Receptor-like protein kin	no	no	0.876	0.436	0.328	3e-60

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/552 (44%), Positives = 360/552 (65%), Gaps = 10/552 (1%)

Query: 11  VTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSF 70
           V +SWN+S   C W GVTCG R +RVI L+L    + G +SP +GNLSFLR +NLA+NSF
Sbjct: 50  VLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSF 109

Query: 71  RAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLL 130
            + IP +VG LFRLQ L ++ N   G+IP++LS CS L   + S+N L    P+E+G+L 
Sbjct: 110 GSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLS 169

Query: 131 KFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190
           K  +L++++N+L G  PAS+GNL++LQ+++   N++ G IP   + +  ++ F + LN F
Sbjct: 170 KLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSF 229

Query: 191 SGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNA 249
           SG FPP + NISSLE + +  N + G+L  D G  LPNLR  ++  N  TG++  +L+N 
Sbjct: 230 SGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANI 289

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
           ++L++ DI+ N  SG + ++FG L+NL WL +  N+LG  +++ L+FI  + NCT+LE L
Sbjct: 290 SSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYL 349

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI 369
            +  NR G  LP S+ANLSTT+T +  G N ISG IP  I NLV+L  L +E N L+  +
Sbjct: 350 DVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGEL 409

Query: 370 ------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLIL 423
                 L +LQ++ L+ N + G IPS+ GN+T L +  L  N   G IP S+G C+ L+ 
Sbjct: 410 PVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLD 469

Query: 424 LTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGE 483
           L    N+ +GT+P+++ +I +L+  ++LS+N L+GHFP EVGKL+ LV L  S N  SG+
Sbjct: 470 LWMDTNRLNGTIPQEILQIPSLAY-IDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGK 528

Query: 484 IPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 542
           +P  + GC S+E+L MQ NSF G+IP  +S L S+  +D S NNLSG IP+YL +L  L 
Sbjct: 529 MPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLR 587

Query: 543 FLNLSYNHFESK 554
            LNLS N FE +
Sbjct: 588 NLNLSMNKFEGR 599

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/562 (42%), Positives = 345/562 (61%), Gaps = 12/562 (2%)

Query: 2   KSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFL 60
           KSQ+ +D   V SSWN+S  LC W GVTCG +++RV  L+L    +GG +SP +GNLSFL
Sbjct: 33  KSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFL 92

Query: 61  RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
            S++L  N F   IP EVG L RL+ L +  NY  G IP  L  CS L+     +N+L G
Sbjct: 93  VSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGG 152

Query: 121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
             P+E+G+L     LN+  N++RG+LP S+GNL+ L+++ ++ N L G IPS  + +  +
Sbjct: 153 SVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQI 212

Query: 181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
            S  +  N FSG+FPP + N+SSL+ + I  N + G L  D+G+ LPNL  F + GN  T
Sbjct: 213 WSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFT 272

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
           GS+  +LSN + L++L +N N  +G +   FG + NL  L L  N+LG+ ++ DL+F+T 
Sbjct: 273 GSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLTS 331

Query: 300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
           LTNCT+LE L +  NR G  LP S+ANLS  +  +  G   ISG IP  I NL+NL  L 
Sbjct: 332 LTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLI 391

Query: 360 VEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
           ++ N L+  +      L +L+ L L  N L G IP+F+GN+TML    L  N   G +P 
Sbjct: 392 LDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPT 451

Query: 414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSL 473
           S+GNC +L+ L    NK +GT+P ++ +I  L + L++S N L G  P ++G L+NL +L
Sbjct: 452 SLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQNLGTL 510

Query: 474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
            +  N  SG++P TLG C ++E L ++ N F G IP  L  L  + E+DLS N+LSG IP
Sbjct: 511 SLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSIP 569

Query: 533 QYLENLSFLSFLNLSYNHFESK 554
           +Y  + S L +LNLS+N+ E K
Sbjct: 570 EYFASFSKLEYLNLSFNNLEGK 591

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/548 (45%), Positives = 354/548 (64%), Gaps = 11/548 (2%)

Query: 1   MKSQLQDPLGVT-SSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSF 59
            KSQ+ +   V   SWN+S+ LC WTGV CG +H+RV G+DL    + G +SPFVGNLSF
Sbjct: 47  FKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSF 106

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
           LRS+NLA+N F   IP EVGNLFRLQ L ++NN F G IP  LS CS+L   + S+N L 
Sbjct: 107 LRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLE 166

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
              P E G+L K  LL++  N+L G+ PAS+GNL++LQ ++   N++ G IP   + ++ 
Sbjct: 167 QGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQ 226

Query: 180 LISFNVGLNQFSGMF-PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
           +I F + LN+F+G+F PPI N+SSL ++ I  N + G+L  D G  LPNL+   +  N+ 
Sbjct: 227 MIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSF 286

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
           TG++ ++LSN ++L++LDI  N  +GK+ ++FG LQNL  L L  N+LG  ++ DLDF+ 
Sbjct: 287 TGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLG 346

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
            LTNC++L+ L +  N+ G  LP  +ANLST +T ++ G N ISG IP GI NLV+L  L
Sbjct: 347 ALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTL 406

Query: 359 GVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
            +  N L   +      L  L+ + L+ N L G IPS LGN++ LT   L  N   G+IP
Sbjct: 407 DLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIP 466

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
            S+G+C  L+ L    NK +G++P +L  + +L V+LN+S NLL G    ++GKLK L++
Sbjct: 467 SSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLLA 525

Query: 473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
           LD+S N  SG+IP TL  C SLE+L +Q NSF G IP  +  L  +  LDLS+NNLSG I
Sbjct: 526 LDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGTI 584

Query: 532 PQYLENLS 539
           P+Y+ N S
Sbjct: 585 PEYMANFS 592

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 218/677 (32%), Positives = 319/677 (47%), Gaps = 136/677 (20%)

Query: 7   DPLGVTSSWN--NSINLCQWTGVTC---GHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLR 61
           DPLGV S W    S+  C WTG+TC   GH    V+ + L  + + G LSP + NL++L+
Sbjct: 44  DPLGVLSDWTIIGSLRHCNWTGITCDSTGH----VVSVSLLEKQLEGVLSPAIANLTYLQ 99

Query: 62  SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE 121
            ++L +NSF  +IP E+G L  L  L L  NYFSG IP+ +    N+   +  NN L+G+
Sbjct: 100 VLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGD 159

Query: 122 SPAEI------------------------GNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
            P EI                        G+L+  Q+   A NHL G +P SIG L+ L 
Sbjct: 160 VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLT 219

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGS 216
           +++++GN+L G+IP    ++ NL S  +  N   G  P  I N SSL  + ++ N   G 
Sbjct: 220 DLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGK 279

Query: 217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-------- 268
           +P ++G NL  L+   I  N LT S+  SL   T L  L ++ N   G +S         
Sbjct: 280 IPAELG-NLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESL 338

Query: 269 --------NFGG--------LQNLSWLNLGKNNLGTRTANDLDFIT----------LLT- 301
                   NF G        L+NL+ L +G NN+      DL  +T          LLT 
Sbjct: 339 EVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTG 398

Query: 302 -------NCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVN 354
                  NCT L++L L  N+    +P     ++  +T I+ G N  +G IPD I N  N
Sbjct: 399 PIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN--LTFISIGRNHFTGEIPDDIFNCSN 456

Query: 355 LNALGVEFNQLAVTI------------------------------LKSLQMLFLHENVLQ 384
           L  L V  N L  T+                              LK L +L+LH N   
Sbjct: 457 LETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFT 516

Query: 385 GTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIIT 444
           G IP  + NLT+L    +  NDL G IP  + + K L +L    NK SG +P    ++ +
Sbjct: 517 GRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLES 576

Query: 445 LSVL-----------------------LNLSDNLLSGHFPAE-VGKLKNL-VSLDISSNM 479
           L+ L                        ++SDNLL+G  P E +  LKN+ + L+ S+N+
Sbjct: 577 LTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNL 636

Query: 480 FSGEIPTTLGCTSL-EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLEN 537
            +G IP  LG   + + + + +N F+GSIP +L + K++  LD S+NNLSGHIP +  + 
Sbjct: 637 LTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQG 696

Query: 538 LSFLSFLNLSYNHFESK 554
           +  +  LNLS N F  +
Sbjct: 697 MDMIISLNLSRNSFSGE 713

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  245 bits (625), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 185/586 (31%), Positives = 281/586 (47%), Gaps = 47/586 (8%)

Query: 5   LQDPLGVTSSWNN-SINLCQWTGVTCGHRHQR-------VIGLDLRHQSIGGFLSPFVGN 56
            QD L    +WN      C W GV C  +          V  LDL   ++ G +SP +G 
Sbjct: 48  FQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGG 107

Query: 57  LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116
           L  L  +NLA N+   +IP E+GN  +L+ + L NN F G IP  +++ S L  F   NN
Sbjct: 108 LVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNN 167

Query: 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSH 176
           KL+G  P EIG+L   + L    N+L G LP S+GNL+ L       N   G IP+    
Sbjct: 168 KLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGK 227

Query: 177 VRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235
             NL    +  N  SG  P  I  +  L+ + + +N + G +P DIG NL +L    + G
Sbjct: 228 CLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIG-NLTSLETLALYG 286

Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD 295
           N+L G +   + N  +L+KL + +N  +G +    G L  +  ++  +N L      +L 
Sbjct: 287 NSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELS 346

Query: 296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNL 355
            I      ++L +L L  N+   ++P  L+ L   +  +    N ++G IP G  NL ++
Sbjct: 347 KI------SELRLLYLFQNKLTGIIPNELSKLR-NLAKLDLSINSLTGPIPPGFQNLTSM 399

Query: 356 NALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLG 409
             L +  N L+  I         L ++   EN L G IP F+   + L    L  N + G
Sbjct: 400 RQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFG 459

Query: 410 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--------------------- 448
           NIPP +  CK+L+ L    N+ +G  P +L +++ LS +                     
Sbjct: 460 NIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKL 519

Query: 449 --LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTG 505
             L+L+ N  S + P E+ KL NLV+ ++SSN  +G IP+ +  C  L+ L +  NSF G
Sbjct: 520 QRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIG 579

Query: 506 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
           S+P  L SL  +  L LS N  SG+IP  + NL+ L+ L +  N F
Sbjct: 580 SLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLF 625

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 269/537 (50%), Gaps = 43/537 (8%)

Query: 48  GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSN 107
           G +   +GNL  L+ + LA+      IP ++G L R+Q+L L +NY  G IP  L  CS+
Sbjct: 157 GDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSD 216

Query: 108 LVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLG 167
           L  F A+ N L G  PAE+G L   ++LN+A N L G++P+ +G +S LQ +++  N+L 
Sbjct: 217 LTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQ 276

Query: 168 GRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLP 226
           G IP + + + NL + ++  N  +G  P    N+S L  + +  N   GSLP  I  N  
Sbjct: 277 GLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNT 336

Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKV-------------------- 266
           NL   ++SG  L+G +   LS   +L++LD++ N  +G +                    
Sbjct: 337 NLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTL 396

Query: 267 ----SINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPF 322
               S +   L NL WL L  NNL  +   ++  +       KLEVL L  NRF   +P 
Sbjct: 397 EGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISAL------RKLEVLFLYENRFSGEIPQ 450

Query: 323 SLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKS------LQML 376
            + N  T++  I    N   G IP  I  L  LN L +  N+L   +  S      L +L
Sbjct: 451 EIGN-CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNIL 509

Query: 377 FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMP 436
            L +N L G+IPS  G L  L Q +L  N L GN+P S+ + +NL  +    N+ +GT+ 
Sbjct: 510 DLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIH 569

Query: 437 RQLPRIITLSVL-LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLE 494
              P   + S L  ++++N      P E+G  +NL  L +  N  +G+IP TLG    L 
Sbjct: 570 ---PLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELS 626

Query: 495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
            L M  N+ TG+IP  L   K +T +DL+ N LSG IP +L  LS L  L LS N F
Sbjct: 627 LLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQF 683

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 189/579 (32%), Positives = 290/579 (50%), Gaps = 38/579 (6%)

Query: 13  SSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRA 72
           +SWN S   C WTGVTC    + V  LDL   ++ G LS  V +L  L++++LA N    
Sbjct: 48  TSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISG 107

Query: 73  EIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSR-CSNLVKFEASNNKLAGESPAEIGNLLK 131
            IP ++ NL+ L++L L+NN F+G  P  LS    NL   +  NN L G+ P  + NL +
Sbjct: 108 PIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQ 167

Query: 132 FQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG-LNQF 190
            + L++  N+  G++PA+ G    L+ + V+GN L G+IP    ++  L    +G  N F
Sbjct: 168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 191 SGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNA 249
               PP I N+S L           G +P +IG  L  L    +  N  TG++   L   
Sbjct: 228 ENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKLDTLFLQVNAFTGTITQELGLI 286

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN------DLDFITLLTN- 302
           ++L+ +D++ N+F+G++  +F  L+NL+ LNL +N L            +L+ + L  N 
Sbjct: 287 SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENN 346

Query: 303 -----------CTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
                        +L +L L SN+    LP ++ + +  MT I  G N + G IPD +  
Sbjct: 347 FTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLG-NFLFGSIPDSLGK 405

Query: 352 LVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLT-MLTQRLLEV 404
             +L  + +  N L  +I      L  L  + L +N L G +P   G ++  L Q  L  
Sbjct: 406 CESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSN 465

Query: 405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV 464
           N L G++P +IGN   +  L    NK SG++P ++ R+  LS  L+ S NL SG    E+
Sbjct: 466 NQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSK-LDFSHNLFSGRIAPEI 524

Query: 465 GKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLS 523
            + K L  +D+S N  SG+IP  L G   L YL +  N   GSIP T++S++S+T +D S
Sbjct: 525 SRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFS 584

Query: 524 RNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFV 562
            NNLSG +P      S   F   +Y  F   S    P++
Sbjct: 585 YNNLSGLVP------STGQFSYFNYTSFVGNSHLCGPYL 617

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  236 bits (603), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 262/523 (50%), Gaps = 43/523 (8%)

Query: 41  LRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPT 100
           L    + G +   + N   L+ ++L+NN+   +IP  +  L  L NL L NN   G + +
Sbjct: 344 LSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS 403

Query: 101 NLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEIN 160
           ++S  +NL +F   +N L G+ P EIG L K +++ + EN   G++P  IGN + LQEI+
Sbjct: 404 SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEID 463

Query: 161 VNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPL 219
             GNRL G IPS+   +++L   ++  N+  G  P  + N   +  I +  N   GS+P 
Sbjct: 464 WYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 220 DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWL 279
             G  L  L  F+I  N+L G+L DSL N  NL +++ + N F+G +S   G    LS+ 
Sbjct: 524 SFGF-LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSF- 581

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN 339
                                          +  N F   +P  L   ST +  +  G N
Sbjct: 582 ------------------------------DVTENGFEGDIPLELGK-STNLDRLRLGKN 610

Query: 340 QISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGN 393
           Q +G IP     +  L+ L +  N L+  I       K L  + L+ N L G IP++LG 
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
           L +L +  L  N  +G++P  I +  N++ L    N  +G++P+++  +  L+ L NL +
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL-NLEE 729

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTS--LEYLCMQDNSFTGSIPSTL 511
           N LSG  P+ +GKL  L  L +S N  +GEIP  +G        L +  N+FTG IPST+
Sbjct: 730 NQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTI 789

Query: 512 SSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESK 554
           S+L  +  LDLS N L G +P  + ++  L +LNLSYN+ E K
Sbjct: 790 STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK 832

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 187/588 (31%), Positives = 282/588 (47%), Gaps = 48/588 (8%)

Query: 1   MKSQLQDPLGVTSSWNNSINL-CQWTGVTCGHRHQ--RVIGLDLRHQSIGGFLSPFVGNL 57
           +KS+  D      +WN++ ++ C WTGV C +      V+ L+L    + G LSP +G L
Sbjct: 37  IKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGL 96

Query: 58  SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117
             L+ ++L+ N    +IP E+GN   L+ L L NN F G+IP  + +  +L      NN+
Sbjct: 97  VHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNR 156

Query: 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHV 177
           ++G  P EIGNLL    L    N++ GQLP SIGNL  L       N + G +PS     
Sbjct: 157 ISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGC 216

Query: 178 RNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN 236
            +L+   +  NQ SG  P  I  +  L  + +  N + G +P +I  N  +L    +  N
Sbjct: 217 ESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREIS-NCTSLETLALYKN 275

Query: 237 NLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF 296
            L G +   L +  +L+ L + RN  +G +    G L     ++  +N L      +L  
Sbjct: 276 QLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELG- 334

Query: 297 ITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLN 356
                N   LE+L L  N+    +P  L+ L   ++ +    N ++G IP G   L  L 
Sbjct: 335 -----NIEGLELLYLFENQLTGTIPVELSTLK-NLSKLDLSINALTGPIPLGFQYLRGLF 388

Query: 357 ALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFL---GNLTMLTQRLLEVNDL 407
            L +  N L+ TI         L +L + +N L G IPS+L    N+ +L    L  N+L
Sbjct: 389 MLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILN---LGTNNL 445

Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL------------------- 448
            GNIP  I  CK L+ L   +N   G  P  L + + ++ +                   
Sbjct: 446 SGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCS 505

Query: 449 ----LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSF 503
               L L+DN  +G  P E+G L  L +L+ISSN  +GE+P+ +  C  L+ L M  N+F
Sbjct: 506 ALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNF 565

Query: 504 TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
           +G++PS + SL  +  L LS NNLSG IP  L NLS L+ L +  N F
Sbjct: 566 SGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLF 613

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  233 bits (594), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 263/517 (50%), Gaps = 19/517 (3%)

Query: 48  GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSN 107
           G L   +G+   L+ ++L++N    +IP  +  L  L+ L L +N  +GKIP ++S+CS 
Sbjct: 119 GTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSK 178

Query: 108 LVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN-HLRGQLPASIGNLSALQEINVNGNRL 166
           L      +N L G  P E+G L   +++ I  N  + GQ+P+ IG+ S L  + +    +
Sbjct: 179 LKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSV 238

Query: 167 GGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNL 225
            G +PS+   ++ L + ++     SG  P  + N S L  +F++ N   GS+P +IG  L
Sbjct: 239 SGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIG-QL 297

Query: 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285
             L    +  N+L G + + + N +NL+ +D++ NL SG +  + G L  L    +  N 
Sbjct: 298 TKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNK 357

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
                       T ++NC+ L  L LD N+   ++P  L  L T +T     +NQ+ G I
Sbjct: 358 FSGSIP------TTISNCSSLVQLQLDKNQISGLIPSELGTL-TKLTLFFAWSNQLEGSI 410

Query: 346 PDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQ 399
           P G+A+  +L AL +  N L  TI      L++L  L L  N L G IP  +GN + L +
Sbjct: 411 PPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVR 470

Query: 400 RLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH 459
             L  N + G IP  IG+ K +  L    N+  G +P ++     L  +++LS+N L G 
Sbjct: 471 LRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQ-MIDLSNNSLEGS 529

Query: 460 FPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSIT 518
            P  V  L  L  LD+S+N FSG+IP +LG   SL  L +  N F+GSIP++L     + 
Sbjct: 530 LPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQ 589

Query: 519 ELDLSRNNLSGHIPQYLENLSFLSF-LNLSYNHFESK 554
            LDL  N LSG IP  L ++  L   LNLS N    K
Sbjct: 590 LLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGK 626

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
255577438	1028	receptor-kinase, putative [Ricinus commu	0.964	0.533	0.461	1e-128
359482058	1040	PREDICTED: probable LRR receptor-like se	0.973	0.531	0.483	1e-125
224116466	1008	predicted protein [Populus trichocarpa]	0.970	0.546	0.467	1e-125
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.973	0.290	0.481	1e-124
224115346	1017	predicted protein [Populus trichocarpa]	0.966	0.539	0.478	1e-124
224127492	1022	predicted protein [Populus trichocarpa]	0.971	0.540	0.477	1e-123
224097752	1025	predicted protein [Populus trichocarpa]	0.973	0.539	0.452	1e-122
224081190	1011	predicted protein [Populus trichocarpa]	0.970	0.545	0.456	1e-121
356529797	971	PREDICTED: probable LRR receptor-like se	0.973	0.569	0.451	1e-121
357484501	1006	Kinase-like protein [Medicago truncatula	0.963	0.543	0.473	1e-121

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/557 (46%), Positives = 361/557 (64%), Gaps = 9/557 (1%)

Query: 6   QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINL 65
            DPL + SSWN S++ C+W+G+TCG RHQRVI +DL    + G L+ F+GNLSFLR +NL
Sbjct: 48  DDPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNL 107

Query: 66  ANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAE 125
            NNS    IP E+G LFRL+ L L  N FSG+IP N+S CSNL+      N L G+ PAE
Sbjct: 108 QNNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAE 167

Query: 126 IGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNV 185
           + +L K Q+     N+L G++  S  NLS+L+ I    N   G IP++   +++L +F++
Sbjct: 168 LKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSL 227

Query: 186 GLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 244
           G + FSG+ PP I N+SSL  + +  N  HG+LP D+G +LP L    +  N  +GS+  
Sbjct: 228 GGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPP 287

Query: 245 SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCT 304
           ++SNA+NL  LD+++N F+GKV  +   L NLS++ + KNNLG    +DL F+  L N T
Sbjct: 288 TISNASNLVALDVSQNNFTGKVP-SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNT 346

Query: 305 KLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
            LE+L +  N  G VLP  L+N ST +  +AFG N+I G IP  I NL+ L ALG E N+
Sbjct: 347 NLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNE 406

Query: 365 LAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC 418
           L  +I      LK+L  L+L++N + G+IPS LGN+T L+   L+VN+L G+IP S+GNC
Sbjct: 407 LTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNC 466

Query: 419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSN 478
           + ++L+   +N  SGT+P++L  I +LS+ L+LS+N  +G  P EVG L NL  LD+S N
Sbjct: 467 QQMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKN 526

Query: 479 MFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 537
             SGEIP +LG CT LE L +Q N+F G+IP +LSSL+ I +L+LS NNL+G IP +   
Sbjct: 527 KLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAE 586

Query: 538 LSFLSFLNLSYNHFESK 554
              L  L+LSYN FE +
Sbjct: 587 FKSLEKLDLSYNDFEGE 603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 272/563 (48%), Positives = 363/563 (64%), Gaps = 10/563 (1%)

Query: 1   MKSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSF 59
           +K+Q+ QDPLG+T+SWN+S++ C WTGVTCGHRHQRV  L+L    + G LSP +GNL+F
Sbjct: 47  IKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSLSPSIGNLTF 106

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
           L  +NL  N+F  +IP E+G L RL+ L LTNN FSG+IP NLSRCSNLV F    N L 
Sbjct: 107 LTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLI 166

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
           G  P+ +G+  K   + +  N+L G +P S+GNL++++ ++   N L G IP     ++ 
Sbjct: 167 GRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQT 226

Query: 180 LISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
           L    +G+N FSG+ P  + N+SSLE   +  N  +GSLP D+   LPNL+   I  N+ 
Sbjct: 227 LEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDF 286

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
           TGSL  SLSNA+NL + DI  + F+GKVSI+FGG+ NL  L L  N LG   A+DL F+ 
Sbjct: 287 TGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLN 346

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
            L  C  L+VL L  ++FG VLP S+ANLST +  +   NNQ+SG IP GI NLVNL  L
Sbjct: 347 SLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDL 406

Query: 359 GVEFNQLAVTI---LKSLQML---FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
            +  N    +I   + +LQML    L  N L G IPS LGN+T L    L+ N L G IP
Sbjct: 407 ILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIP 466

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
            S GN   L  L    N  +GT+P ++  +++L++ LNL+ N L+G  P+EV KLKNL  
Sbjct: 467 SSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGH 526

Query: 473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
           LD+S N  SGEIP  LG C +LE+L M+ N F GSIP +  SL+ + +LDLSRNNLSG I
Sbjct: 527 LDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQI 586

Query: 532 PQYLENLSFLSFLNLSYNHFESK 554
           P++L+ LS LS LNLS+N+FE +
Sbjct: 587 PEFLQQLS-LSNLNLSFNNFEGQ 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/561 (46%), Positives = 366/561 (65%), Gaps = 10/561 (1%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLR 61
           K+Q+ DP    SSWN S++ CQW+GV CG +HQRVI LDL    + G LSP +GNLSFLR
Sbjct: 37  KAQISDPTTKLSSWNESLHFCQWSGVKCGRQHQRVIELDLHSSQLVGSLSPSIGNLSFLR 96

Query: 62  SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE 121
            ++L NNSF   IP E+G L RLQ L L NN FSG+IP+N+S CSNL+K     N L G 
Sbjct: 97  LLSLENNSFTNAIPQEIGRLVRLQTLILGNNSFSGEIPSNISHCSNLLKLNLEGNNLTGN 156

Query: 122 SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI 181
            PA +G+L K Q+ +  +N+L G++P S  NLS++ EI+   N + G IPS+   ++ L 
Sbjct: 157 LPAGLGSLSKLQVFSFRKNNLDGKIPLSFENLSSIIEIDGTLNNIQGGIPSSIGKLKTLN 216

Query: 182 SFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
            F++G N  SG  P  + NISSL +  +  N +HG+LP +IG+ LPNL++  I  N L+G
Sbjct: 217 FFSLGSNNLSGTIPASLYNISSLIHFSLPYNQFHGTLPPNIGLTLPNLQYLGIHDNRLSG 276

Query: 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
            L  +L NAT   ++ ++ N F+GKV      + NL  L++ +N LG    +DL F+  L
Sbjct: 277 QLPATLINATKFTEIYLSYNKFTGKVP-TLAIMPNLRILSMEENGLGKGEDDDLSFLYTL 335

Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
           +N +KLE L +D+N FG VLP  ++N ST +  +AFG+NQI G IPDGI NLV+L+ LG+
Sbjct: 336 SNSSKLEDLYIDNNNFGGVLPDIISNFSTKLKQMAFGSNQIRGTIPDGIGNLVSLDTLGL 395

Query: 361 EFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS 414
           E N L  +I      L++L   FL+EN L G+IPS LGN+T L Q   + N+L G+IPPS
Sbjct: 396 EANHLTGSIPSSIGKLQNLADFFLNENKLSGSIPSSLGNITSLMQINFDQNNLQGSIPPS 455

Query: 415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLD 474
           +GNC+NL++L   +N  SG +P+++  I +LS+ L LS+N L+G  P EVGKL  L  +D
Sbjct: 456 LGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQLTGSLPFEVGKLVTLGYMD 515

Query: 475 ISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
           IS N  SGEIP +LG C SLE+L +  N   G I  +L SL+++ +L+LS NNLSG IP+
Sbjct: 516 ISKNRLSGEIPASLGSCESLEHLYLDGNFLQGPISESLRSLRALQDLNLSHNNLSGQIPK 575

Query: 534 YLENLSFLSFLNLSYNHFESK 554
           +L +L   S L+LS+N  E +
Sbjct: 576 FLGDLKLQS-LDLSFNDLEGE 595

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/563 (48%), Positives = 362/563 (64%), Gaps = 10/563 (1%)

Query: 1   MKSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSF 59
           +K+Q+ QDPLG+T+SWN+S++ C WTGVTCGHRHQRV  L+L    + G LSP +GNL+F
Sbjct: 78  IKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGSLSPSIGNLTF 137

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
           L  +NL  N+F  +IP E+G L RL+ L LTNN FSG+IP NLSRCSNLV F    N L 
Sbjct: 138 LTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLI 197

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
           G  P+ +G+  K   + +  N+L G +P S+GNL++++ ++   N L G IP     ++ 
Sbjct: 198 GRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQT 257

Query: 180 LISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
           L    +G+N FSG+ P  + N+SSLE   +  N  +GSLP D+   LPNL+   I  N+ 
Sbjct: 258 LEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDF 317

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
           TG L  SLSNA+NL + DI  + F+GKVSI+FGG+ NL  L L  N LG   A+DL F+ 
Sbjct: 318 TGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLN 377

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
            L  C  L+VL L  ++FG VLP S+ANLST +  +   NNQ+SG IP GI NLVNL  L
Sbjct: 378 SLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDL 437

Query: 359 GVEFNQLAVTI---LKSLQML---FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
            +  N    +I   + +LQML    L  N L G IPS LGN+T L    L+ N L G IP
Sbjct: 438 ILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIP 497

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
            S GN   L  L    N  +GT+P ++  +++L++ LNL+ N L+G  P+EV KLKNL  
Sbjct: 498 SSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGH 557

Query: 473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
           LD+S N  SGEIP  LG C +LE+L M+ N F GSIP +  SL+ + +LDLSRNNLSG I
Sbjct: 558 LDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQI 617

Query: 532 PQYLENLSFLSFLNLSYNHFESK 554
           P++L+ LS LS LNLS+N+FE +
Sbjct: 618 PEFLQQLS-LSNLNLSFNNFEGQ 639

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/558 (47%), Positives = 362/558 (64%), Gaps = 9/558 (1%)

Query: 5   LQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSIN 64
           + DP  +  SWN+S++ CQW GV CG RH+RV  L L    + G +SP +GNLSFL  ++
Sbjct: 51  IHDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISPALGNLSFLWGLD 110

Query: 65  LANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPA 124
           L+NN+ + +IP  +G LFRLQ L L NN F G+IP NLS CS L     ++N L G+ PA
Sbjct: 111 LSNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLGLASNNLVGKIPA 170

Query: 125 EIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFN 184
           E+ +L K + L I +N+L G +P  IGNL++L  I+   N   GRIP T   ++NL S  
Sbjct: 171 ELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLGQLKNLESLG 230

Query: 185 VGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 243
           +G N  SG  P PI N+S+L  + +  N   G LP DIGV+LPNL++  I  N  +GS+ 
Sbjct: 231 LGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIRANQFSGSIP 290

Query: 244 DSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC 303
            S+SN++NLQ L+   N FSGK+S+NFGGL++L+ ++L  N +G+    +L F+  L NC
Sbjct: 291 LSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGELSFLDSLINC 350

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363
           T L  + +  N F  +LP SL NLST +T +  G NQ+ G I  GI NL+NLN LG+EFN
Sbjct: 351 TSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLINLNTLGLEFN 410

Query: 364 QLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN 417
           QL+  I      L+ LQ   L  N L G IPS +GNLT+L +  L+ N L G IP SIGN
Sbjct: 411 QLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQGTIPSSIGN 470

Query: 418 CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISS 477
           C+ L+LL   +N  SG  P++L  I +LSV L+LS N  +G  P+E+G LK+L  L++S 
Sbjct: 471 CQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLAKLNVSY 530

Query: 478 NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 536
           N FSGEIP+TL  CTSLEYL MQ N F GSIPS+ S+L+ I +LDLS NNLSG IP++L+
Sbjct: 531 NEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNLSGQIPKFLD 590

Query: 537 NLSFLSFLNLSYNHFESK 554
             + L+ LNLS+N FE +
Sbjct: 591 TFALLT-LNLSFNDFEGE 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/563 (47%), Positives = 350/563 (62%), Gaps = 11/563 (1%)

Query: 2   KSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFL 60
           K+Q+  DPLG  SSWN S   CQW+GVTCG RHQRV+ LDL    + G LSP +GNLSFL
Sbjct: 43  KAQITGDPLGKLSSWNESSQFCQWSGVTCGRRHQRVVELDLHSYQLVGSLSPHIGNLSFL 102

Query: 61  RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
           R +NLANNS    IP E+G LFRL+ L L NN F G IP N+SRC+NL   + S   L G
Sbjct: 103 RILNLANNSLSLYIPQELGRLFRLEELVLRNNTFDGGIPANISRCANLRILDFSRGNLTG 162

Query: 121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
           + PAE+G L K Q+L I  N+  G++P S GNLSA+  I  + N L G IP+    ++ L
Sbjct: 163 KLPAELGLLSKLQVLTIELNNFVGEIPYSFGNLSAINAIYGSINNLEGSIPNVFGQLKRL 222

Query: 181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
              ++G N  SGM PP I N+SSL  +    N  +GSLP  +G+ LPNL+ F I  N   
Sbjct: 223 KILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTNQFG 282

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFI-T 298
           G +  + SNA+NL    I  N F+GKV        +L  L +G NNLG    NDL+F+  
Sbjct: 283 GLIPATFSNASNLLSFQIGSNNFNGKVP-PLSSSHDLQVLGVGDNNLGKGENNDLNFVYP 341

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
           L  N T LE L    N FG VLP  ++N ST +  + F  NQI G IP  I NL+NL AL
Sbjct: 342 LANNMTSLEALDTSDNNFGGVLPEIVSNFSTKLMKMTFARNQIRGSIPTQIGNLINLEAL 401

Query: 359 GVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
           G+E NQL   I      L+ L  LFL+ N + G IPS +GN+T L +  + +N+L G+IP
Sbjct: 402 GLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSIP 461

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
           PS+GN + L+ L   +N  SG +P++L  I +LS+ L LS+N L+G  P E+ KL NL  
Sbjct: 462 PSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLGY 521

Query: 473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
           LD+S N FSGEIP +LG C SLE L +++N   G IP TLSSL++I EL+LS NNL+G I
Sbjct: 522 LDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTGQI 581

Query: 532 PQYLENLSFLSFLNLSYNHFESK 554
           P++LE+   L  LNLS+N FE +
Sbjct: 582 PEFLEDFKLLESLNLSFNDFEGE 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/563 (45%), Positives = 359/563 (63%), Gaps = 10/563 (1%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSF 59
           +KSQ+  DP G+ SSWN S++ C W+GV CG RH+RV+ +DL    + G LSP +GNLSF
Sbjct: 42  LKSQITNDPFGMLSSWNESLHFCDWSGVICGKRHRRVVEIDLHSAQLVGSLSPHIGNLSF 101

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
           LR + L NN F   IP E+G+LFRL+ L+L NN F GKIP N+S CSNL+    S N L 
Sbjct: 102 LRILKLENNRFSHNIPQELGHLFRLRMLSLENNTFDGKIPVNISHCSNLLILSLSGNNLT 161

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
           G+ P E+G+L K Q+     N+L G +P+S GNLSA+ +I   GN L G IP++   +++
Sbjct: 162 GKLPIELGSLSKLQVFFFQFNYLVGGIPSSFGNLSAIIQIFGAGNYLQGGIPNSIGQLKS 221

Query: 180 LISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
           L SF+ G N  +GM PP I N+SSL    +  N  HG+LP D+G+ LPNL   ++S N  
Sbjct: 222 LKSFSFGRNNMTGMIPPSIYNLSSLMRFAVPVNQLHGNLPPDLGLTLPNLEILLMSFNRF 281

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
           +GS+  + SNA+ +  ++++ N  +G+V  +   L  L WL +  N LG    +DL F+ 
Sbjct: 282 SGSIPPTFSNASTIAVIELSNNNLTGRVP-DLSSLSKLRWLIVDVNYLGNGNDDDLSFLP 340

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
            L N T LE L ++ N FG +LP  ++N S  +  + FG NQI G IP GI NL+ L+ L
Sbjct: 341 PLANKTSLEELSINDNNFGGLLPKIISNFSENLKRMTFGRNQIRGSIPSGIGNLIGLDTL 400

Query: 359 GVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
           G+E NQL   I      L++L +L L  N + G IPS +GN+T L +  L  N+L G IP
Sbjct: 401 GLEMNQLTGVIPNSIGKLQNLGVLALGGNKISGNIPSSMGNITSLLEVYLSANNLQGRIP 460

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
            S+GNC+NL++L   +N  SG++P+++  I + S +L LS+N L+G  P EVGKL NL  
Sbjct: 461 SSLGNCQNLLILHLDQNNLSGSIPKEVISIPSSSRILVLSENQLTGSLPLEVGKLANLGY 520

Query: 473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
            ++S N  SGEIP TLG C SLE+L M+ N F G IP +LSSL+++  L+LS NNLSG I
Sbjct: 521 FNLSHNRLSGEIPRTLGSCVSLEFLYMEGNLFQGPIPESLSSLRALQILNLSHNNLSGEI 580

Query: 532 PQYLENLSFLSFLNLSYNHFESK 554
           P++L  L  L+ L+LS+N+ E +
Sbjct: 581 PKFLAELKLLTSLDLSFNNLEGE 603

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/561 (45%), Positives = 356/561 (63%), Gaps = 10/561 (1%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLR 61
           K+Q+ DPL   SSWN S + C+W+GV CGHRHQR++ L+L+   + G LSP +GNLSFLR
Sbjct: 42  KAQITDPLDALSSWNASTHFCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLR 101

Query: 62  SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE 121
            +NL  N F  +IP E+G LFRLQ L L NN FSG+IP N+S CSNL+     +N L G+
Sbjct: 102 VLNLEGNYFSRDIPQELGRLFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGK 161

Query: 122 SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI 181
            PA++G+L K     +  N+L G +P+S GNLS++Q      N L G IP +  +++ L 
Sbjct: 162 IPAQLGSLSKLGAFVLQGNNLVGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLK 221

Query: 182 SFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
            F V  N  SG  P  I NISSL Y+ + +N  HGSLP D+G+NLPNL + +I+ N+L G
Sbjct: 222 YFAVAENDLSGTIPSSICNISSLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNG 281

Query: 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
            +  +LSNA+ +  +D++ N  +GK+  +   L +L  L +  N+LG    +DL F+  L
Sbjct: 282 PIPATLSNASKIFLVDLSYNNLTGKIP-DLASLPDLQKLLVHHNDLGNGEEDDLSFLYTL 340

Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
            N T LE L ++ N FG VLP  ++N ST + GI FG NQI G IP  I NL++L+ L +
Sbjct: 341 ANSTNLESLGINDNNFGGVLPEIVSNFSTNLKGITFGRNQIHGSIPTEIGNLISLDTLSL 400

Query: 361 EFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS 414
           E NQL      ++  L++L  L+L+EN + G+IPS LGN+T L +     N+L G IP S
Sbjct: 401 ETNQLHGIIPSSIGKLQNLAALYLNENKISGSIPSSLGNITSLVEVSFAQNNLQGTIPAS 460

Query: 415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLD 474
           +GN   L++L   +N  SG +P+++  I +LSVLL L DN L+G  P+EVG+L NL  L 
Sbjct: 461 LGNWHKLLILDLSQNNLSGPIPKEVLGISSLSVLLYLHDNQLTGSLPSEVGQLVNLGFLR 520

Query: 475 ISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
           +S N  SGEIP +L  C SLE L +  N F G +P  LSSL+++  L LS NNLSG IPQ
Sbjct: 521 VSKNRLSGEIPKSLDSCKSLEGLDLGGNFFEGPVPD-LSSLRALQMLLLSYNNLSGQIPQ 579

Query: 534 YLENLSFLSFLNLSYNHFESK 554
           +L++   L  L+LSYN FE +
Sbjct: 580 FLKDFKLLETLDLSYNDFEGE 600

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529797|ref|XP_003533474.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/562 (45%), Positives = 357/562 (63%), Gaps = 9/562 (1%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFL 60
           M S   DP  + +SWN+S + C+W GVTC   +QRV  L+L   ++ GF+SP +GNLSFL
Sbjct: 1   MGSISNDPHQIFASWNSSTHFCKWRGVTCNPMYQRVTQLNLEGNNLQGFISPHLGNLSFL 60

Query: 61  RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
            S+NL NNSF  +IP E+G L +LQNL+LTNN   G+IPTNL+ CSNL     S N L G
Sbjct: 61  TSLNLGNNSFSGKIPQELGRLLQLQNLSLTNNSLEGEIPTNLTSCSNLKVLHLSGNNLIG 120

Query: 121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
           + P EIG+L K Q +++  N+L G +P+SIGNLS+L  +++  N L G +P    H++NL
Sbjct: 121 KIPIEIGSLRKLQAMSLGVNNLTGAIPSSIGNLSSLISLSIGVNYLEGNLPQEICHLKNL 180

Query: 181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
              +V +N+  G FP  + N+S L  I    N ++GSLP ++   LPNLR F++ GN+ +
Sbjct: 181 ALISVHVNKLIGTFPSCLFNMSCLTTISAADNQFNGSLPPNMFHTLPNLREFLVGGNHFS 240

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
             L  S++NA+ LQ LD+ +N   G+V  + G LQ+L +L+L  NNLG  +  DL+F+  
Sbjct: 241 APLPTSITNASILQTLDVGKNQLVGQVP-SLGKLQHLWFLSLYYNNLGDNSTKDLEFLKS 299

Query: 300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
           L NC+KL+V+ +  N FG  LP S+ NLST ++ +  G NQISG IP  + NLV+L  L 
Sbjct: 300 LANCSKLQVVSISYNNFGGSLPNSVGNLSTQLSQLYLGGNQISGKIPAELGNLVSLTILT 359

Query: 360 VEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
           +E N    +I       + LQ L L  N L G +P+F+GNLT L    +  N L G IPP
Sbjct: 360 MEINHFEGSIPANFGKFQKLQRLELSRNKLSGDMPNFIGNLTQLYFLGIAENVLEGKIPP 419

Query: 414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSL 473
           SIGNC+ L  L    N   G++P ++  + +L+ LL+LS N +SG  P EVG+LKN+  +
Sbjct: 420 SIGNCQKLQYLNLYNNNLRGSIPSEVFSLFSLTNLLDLSKNSMSGSLPDEVGRLKNIGRM 479

Query: 474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
            +S N  SG+IP T+G C SLEYL +Q NSF G IPS+L+SLK +  LD+SRN L G IP
Sbjct: 480 ALSENNLSGDIPETIGDCISLEYLLLQGNSFDGVIPSSLASLKGLRVLDISRNRLVGSIP 539

Query: 533 QYLENLSFLSFLNLSYNHFESK 554
           + L+ +SFL + N S+N  E +
Sbjct: 540 KDLQKISFLEYFNASFNMLEGE 561

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484501|ref|XP_003612538.1| Kinase-like protein [Medicago truncatula] gi|355513873|gb|AES95496.1| Kinase-like protein [Medicago truncatula]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/556 (47%), Positives = 350/556 (62%), Gaps = 9/556 (1%)

Query: 7   DPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLA 66
           DP     SWN+SI+ C+W G+TC   H+RV  L+L    + G LSP VGNL+FL ++N+ 
Sbjct: 33  DPNKALESWNSSIHFCKWHGITCKPMHERVTKLNLEGYHLHGSLSPHVGNLTFLTNLNIG 92

Query: 67  NNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEI 126
           NN F  EIP E+G L +LQ L L NN F+G+IP+NL+ CSNL       N + G+ P EI
Sbjct: 93  NNDFLGEIPEELGRLLQLQQLDLINNSFAGEIPSNLTYCSNLKGLNVGGNNVIGKIPIEI 152

Query: 127 GNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG 186
           G+L K QL+N+  N+L G  P+ IGNLS+L  I V  N L G IP    +++N+   +VG
Sbjct: 153 GSLKKLQLINVWGNNLTGGFPSFIGNLSSLIGIAVTYNNLKGEIPQEICNLKNIRRLHVG 212

Query: 187 LNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 245
            N  SGMFP  + NISSL  + +  N + GSLP ++   LPNL  F I  N   GS+  S
Sbjct: 213 ENNLSGMFPSCLYNISSLTQLSLTENKFIGSLPSNLFNTLPNLNMFQIGKNQFFGSMPIS 272

Query: 246 LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK 305
           + NA++LQ LD+ +N   G+V  +   LQ+L WLNL  N  G  +  DL+F+  LTNC+K
Sbjct: 273 IVNASSLQLLDLAQNYLVGQVP-SLEKLQDLYWLNLEDNYFGNNSTIDLEFLKYLTNCSK 331

Query: 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
           LEV+ + +N+FG  LP S+ +LST +T +  G N ISG IP  I NLV L  L ++FN  
Sbjct: 332 LEVVSICNNKFGGSLPNSIGSLSTQLTELCLGGNLISGKIPVEIGNLVELILLAIDFNHF 391

Query: 366 AVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCK 419
              I       + +Q L L  N L G IP F+GNL+ L +  L  N   GNIPPSI NC+
Sbjct: 392 EGIIPTSFGKFQKMQYLALSGNKLSGYIPPFIGNLSQLFKLDLYRNMFQGNIPPSIENCQ 451

Query: 420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNM 479
            L  L    NK SGT+P ++  I +LS LLNLS N LSG  P EVG LKN+  LD+S N 
Sbjct: 452 KLQYLDLSHNKLSGTIPSEIFHIFSLSNLLNLSHNFLSGSLPREVGLLKNIDWLDVSENH 511

Query: 480 FSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 538
            SG+IPTT+G CT+LEYL +Q NSF G+IPS+L+SL+ +  LDLSRN LSG IP  ++N+
Sbjct: 512 LSGDIPTTIGDCTALEYLHLQGNSFNGTIPSSLASLEGLQHLDLSRNRLSGSIPDVMQNI 571

Query: 539 SFLSFLNLSYNHFESK 554
           S L +LN+S+N  E +
Sbjct: 572 SVLEYLNVSFNMLEGE 587

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.934	0.515	0.432	1.3e-114
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.934	0.518	0.446	5.8e-114
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.934	0.525	0.404	1.9e-106
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.933	0.524	0.416	1.2e-104
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.936	0.527	0.401	3.3e-102
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.915	0.507	0.411	6.9e-96
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.906	0.439	0.335	1.9e-67
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.906	0.633	0.322	8.5e-65
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.910	0.413	0.310	9e-64
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.899	0.408	0.310	1.9e-63

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
 Identities = 235/543 (43%), Positives = 342/543 (62%)

Query:     2 KSQLQD--PLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSF 59
             KSQ+ +     V +SWN+S   C W GVTCG R +RVI L+L    + G +SP +GNLSF
Sbjct:    39 KSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSF 98

Query:    60 LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
             LR +NLA+NSF + IP +VG LFRLQ L ++ N   G+IP++LS CS L   + S+N L 
Sbjct:    99 LRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLG 158

Query:   120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
                P+E+G+L K  +L++++N+L G  PAS+GNL++LQ+++   N++ G IP   + +  
Sbjct:   159 HGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQ 218

Query:   180 LISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
             ++ F + LN FSG FPP + NISSLE + +  N + G+L  D G  LPNLR  ++  N  
Sbjct:   219 MVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQF 278

Query:   239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
             TG++  +L+N ++L++ DI+ N  SG + ++FG L+NL WL +  N+LG  +++ L+FI 
Sbjct:   279 TGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIG 338

Query:   299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
              + NCT+LE L +  NR G  LP S+ANLSTT+T +  G N ISG IP  I NLV+L  L
Sbjct:   339 AVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398

Query:   359 GVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
              +E N L+  +      L +LQ++ L+ N + G IPS+ GN+T L +  L  N   G IP
Sbjct:   399 SLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIP 458

Query:   413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVS 472
              S+G C+ L+ L    N+ +GT+P+++ +I               GHFP EVGKL+ LV 
Sbjct:   459 QSLGRCRYLLDLWMDTNRLNGTIPQEILQI-PSLAYIDLSNNFLTGHFPEEVGKLELLVG 517

Query:   473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
             L  S N  SG++P  +G C S+E+L MQ NSF G+IP  +S L S+  +D S NNLSG I
Sbjct:   518 LGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRI 576

Query:   532 PQY 534
             P+Y
Sbjct:   577 PRY 579

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 242/542 (44%), Positives = 340/542 (62%)

Query:     2 KSQLQDPLGVT-SSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFL 60
             KSQ+ +   V   SWN+S+ LC WTGV CG +H+RV G+DL    + G +SPFVGNLSFL
Sbjct:    48 KSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFL 107

Query:    61 RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
             RS+NLA+N F   IP EVGNLFRLQ L ++NN F G IP  LS CS+L   + S+N L  
Sbjct:   108 RSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQ 167

Query:   121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
               P E G+L K  LL++  N+L G+ PAS+GNL++LQ ++   N++ G IP   + ++ +
Sbjct:   168 GVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQM 227

Query:   181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
             I F + LN+F+G+FPP I N+SSL ++ I  N + G+L  D G  LPNL+   +  N+ T
Sbjct:   228 IFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFT 287

Query:   240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
             G++ ++LSN ++L++LDI  N  +GK+ ++FG LQNL  L L  N+LG  ++ DLDF+  
Sbjct:   288 GTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGA 347

Query:   300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
             LTNC++L+ L +  N+ G  LP  +ANLST +T ++ G N ISG IP GI NLV+L  L 
Sbjct:   348 LTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLD 407

Query:   360 VEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
             +  N L   +      L  L+ + L+ N L G IPS LGN++ LT   L  N   G+IP 
Sbjct:   408 LGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPS 467

Query:   414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSL 473
             S+G+C  L+ L    NK +G++P +L  +               G    ++GKLK L++L
Sbjct:   468 SLGSCSYLLDLNLGTNKLNGSIPHELMEL-PSLVVLNVSFNLLVGPLRQDIGKLKFLLAL 526

Query:   474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
             D+S N  SG+IP TL  C SLE+L +Q NSF G IP  +  L  +  LDLS+NNLSG IP
Sbjct:   527 DVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGTIP 585

Query:   533 QY 534
             +Y
Sbjct:   586 EY 587

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 219/542 (40%), Positives = 328/542 (60%)

Query:     2 KSQLQD-PLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFL 60
             KSQ+ +    V SSWNNS  LC W  VTCG +H+RV  L+L    +GG +SP +GN+SFL
Sbjct:    33 KSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFL 92

Query:    61 RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
              S++L++N+F   IP EVGNLFRL++L +  N   G IP  LS CS L+  +  +N L  
Sbjct:    93 ISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQ 152

Query:   121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
               P+E+G+L K  +L++  N+L+G+LP S+GNL++L+ +    N + G +P   + +  +
Sbjct:   153 GVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQM 212

Query:   181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
             +   + +N+F G+FPP I N+S+LE +F+  + + GSL  D G  LPN+R   +  N+L 
Sbjct:   213 VGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLV 272

Query:   240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
             G++  +LSN + LQK  IN+N+ +G +  NFG + +L +L+L +N LG+ T  DL+FI  
Sbjct:   273 GAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFIDS 332

Query:   300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
             LTNCT L++L +   R G  LP S+AN+ST +  +    N   G IP  I NL+ L  L 
Sbjct:   333 LTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQ 392

Query:   360 VEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
             +  N L   +      L  L +L L+ N + G IPSF+GNLT L    L  N   G +PP
Sbjct:   393 LGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVPP 452

Query:   414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSL 473
             S+G C +++ L    NK +GT+P+++ +I T             G  P ++G L+NLV L
Sbjct:   453 SLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLS-GSLPNDIGSLQNLVKL 511

Query:   474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
              + +N FSG +P TLG C ++E L +Q NSF G+IP+ +  L  +  +DLS N+LSG IP
Sbjct:   512 SLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDLSGSIP 570

Query:   533 QY 534
             +Y
Sbjct:   571 EY 572

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 226/542 (41%), Positives = 324/542 (59%)

Query:     2 KSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFL 60
             KSQ+ +D   V SSWN+S  LC W GVTCG +++RV  L+L    +GG +SP +GNLSFL
Sbjct:    33 KSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFL 92

Query:    61 RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
              S++L  N F   IP EVG L RL+ L +  NY  G IP  L  CS L+     +N+L G
Sbjct:    93 VSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGG 152

Query:   121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
               P+E+G+L     LN+  N++RG+LP S+GNL+ L+++ ++ N L G IPS  + +  +
Sbjct:   153 SVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQI 212

Query:   181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
              S  +  N FSG+FPP + N+SSL+ + I  N + G L  D+G+ LPNL  F + GN  T
Sbjct:   213 WSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFT 272

Query:   240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
             GS+  +LSN + L++L +N N  +G +   FG + NL  L L  N+LG+ ++ DL+F+T 
Sbjct:   273 GSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLTS 331

Query:   300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
             LTNCT+LE L +  NR G  LP S+ANLS  +  +  G   ISG IP  I NL+NL  L 
Sbjct:   332 LTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLI 391

Query:   360 VEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
             ++ N L+  +      L +L+ L L  N L G IP+F+GN+TML    L  N   G +P 
Sbjct:   392 LDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPT 451

Query:   414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSL 473
             S+GNC +L+ L    NK +GT+P ++ +I               G  P ++G L+NL +L
Sbjct:   452 SLGNCSHLLELWIGDNKLNGTIPLEIMKI-QQLLRLDMSGNSLIGSLPQDIGALQNLGTL 510

Query:   474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
              +  N  SG++P TLG C ++E L ++ N F G IP  L  L  + E+DLS N+LSG IP
Sbjct:   511 SLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSIP 569

Query:   533 QY 534
             +Y
Sbjct:   570 EY 571

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 218/543 (40%), Positives = 318/543 (58%)

Query:     1 MKSQLQDPL-GVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSF 59
             +KSQ+ +      S+WNNS  LC W  V CG +H+RV  LDL    +GG +SP +GNLSF
Sbjct:    32 IKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSF 91

Query:    60 LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
             L  ++L+NNSF   IP E+GNLFRL+ L +  NY  G+IP +LS CS L+  +  +N L 
Sbjct:    92 LIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLG 151

Query:   120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
                P+E+G+L K   L +  N L+G+ P  I NL++L  +N+  N L G IP   + +  
Sbjct:   152 DGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQ 211

Query:   180 LISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
             ++S  + +N FSG+FPP   N+SSLE +++  N + G+L  D G  LPN+    + GN L
Sbjct:   212 MVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFL 271

Query:   239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
             TG++  +L+N + L+   I +N  +G +S NFG L+NL +L L  N+LG+ +  DL F+ 
Sbjct:   272 TGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDLAFLD 331

Query:   299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
              LTNC+ L  L +  NR G  LP S+ N+ST +T +    N I G IP  I NL+ L +L
Sbjct:   332 ALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSL 391

Query:   359 GVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
              +  N L   +      L  L  L L  N   G IPSF+GNLT L +  L  N   G +P
Sbjct:   392 LLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVP 451

Query:   413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVS 472
             PS+G+C +++ L    NK +GT+P+++ +I T             G  P ++G+L+NLV 
Sbjct:   452 PSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLS-GSLPNDIGRLQNLVE 510

Query:   473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
             L + +N  SG +P TLG C S+E + +Q+N F G+IP  +  L  +  +DLS NNLSG I
Sbjct:   511 LLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNVDLSNNNLSGSI 569

Query:   532 PQY 534
              +Y
Sbjct:   570 SEY 572

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 936 (334.5 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 220/535 (41%), Positives = 304/535 (56%)

Query:    13 SSWNNSIN--LCQWTGVTCGHRHQR----VIGLDLRHQSIGGFLSPFVGNLSFLRSINLA 66
             +SWN S +   C W GV CG R +R    V+ L LR  ++ G +SP +GNLSFLR ++L 
Sbjct:    52 ASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLG 111

Query:    67 NNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEI 126
             +N    EIP E+  L RLQ L L++N   G IP  +  C+ L   + S+N+L G  P EI
Sbjct:   112 DNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREI 171

Query:   127 GNLLK-FQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNV 185
             G  LK    L + +N L G++P+++GNL++LQE +++ NRL G IPS+   + +L++ N+
Sbjct:   172 GASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNL 231

Query:   186 GLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 244
             G N  SGM P  I N+SSL    +  N   G +P +    L  L    +  N   G +  
Sbjct:   232 GQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPA 291

Query:   245 SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCT 304
             S++NA++L  + I  NLFSG ++  FG L+NL+ L L +N   TR  +D  FI+ LTNC+
Sbjct:   292 SVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCS 351

Query:   305 KLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
             KL+ L L  N  G VLP S +NLST+++ +A   N+I+G IP  I NL+ L  L +  N 
Sbjct:   352 KLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNN 411

Query:   365 LAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC 418
                ++      LK+L +L  +EN L G+IP  +GNLT L   LL  N   G IP ++ N 
Sbjct:   412 FRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNL 471

Query:   419 KNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISSN 478
              NL+ L    N  SG +P +L  I T             G  P E+G LKNLV     SN
Sbjct:   472 TNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESN 531

Query:   479 MFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
               SG+IP TLG C  L YL +Q+N  +GSIPS L  LK +  LDLS NNLSG IP
Sbjct:   532 RLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIP 586

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 180/536 (33%), Positives = 260/536 (48%)

Query:     7 DPLGVTSSWN--NSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSIN 64
             DPLGV S W    S+  C WTG+TC      V+ + L  + + G LSP + NL++L+ ++
Sbjct:    44 DPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLSPAIANLTYLQVLD 102

Query:    65 LANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPA 124
             L +NSF  +IP E+G L  L  L L  NYFSG IP+ +    N+   +  NN L+G+ P 
Sbjct:   103 LTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPE 162

Query:   125 EIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFN 184
             EI       L+    N+L G++P  +G+L  LQ     GN L G IP +   + NL   +
Sbjct:   163 EICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLD 222

Query:   185 VGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 243
             +  NQ +G  P    N+ +L+ + +  N+  G +P +IG N  +L    +  N LTG + 
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIG-NCSSLVQLELYDNQLTGKIP 281

Query:   244 DSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC 303
               L N   LQ L I +N  +  +  +   L  L+ L L +N+L    + ++ F+      
Sbjct:   282 AELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLE----- 336

Query:   304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363
               LEVL L SN F    P S+ NL   +T +  G N ISG +P  +  L NL  L    N
Sbjct:   337 -SLEVLTLHSNNFTGEFPQSITNLRN-LTVLTVGFNNISGELPADLGLLTNLRNLSAHDN 394

Query:   364 QLAVTILKS------LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN 417
              L   I  S      L++L L  N + G IP   G +  LT   +  N   G IP  I N
Sbjct:   395 LLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDDIFN 453

Query:   418 CKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISS 477
             C NL  L+   N  +GT+   + ++               G  P E+G LK+L  L + S
Sbjct:   454 CSNLETLSVADNNLTGTLKPLIGKL-QKLRILQVSYNSLTGPIPREIGNLKDLNILYLHS 512

Query:   478 NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
             N F+G IP  +   T L+ L M  N   G IP  +  +K ++ LDLS N  SG IP
Sbjct:   513 NGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIP 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 173/536 (32%), Positives = 275/536 (51%)

Query:    13 SSWNNSIN--LCQWTGVTCGHRH-QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNS 69
             +SWN S +   C W GV CG RH  RV+ L LR  ++ G +SP +GNLSFLR++ L++N 
Sbjct:    54 ASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNH 113

Query:    70 FRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNL 129
                +IP E+  L RLQ L L  N  SG+IP  L   ++L   E +NN L+G  P+ +G L
Sbjct:   114 LSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKL 173

Query:   130 LKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQ 189
                  L +AEN L G +P+S G L  L  +++  N L G IP    ++ +L  F V  N+
Sbjct:   174 TGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNK 233

Query:   190 FSGMFPP--INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS 247
              SG  P    +N+ SL+ ++++ N +HG +P  IG N  N+  F I  N+ +G +   + 
Sbjct:   234 LSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIG-NASNISIFTIGLNSFSGVVPPEIG 292

Query:   248 NATNLQKLDINRNLFSGKVSINFGGLQNLS-WLNLGKNNLG-TRTANDL-DFITLLTNCT 304
                NLQ+L++   L   + + ++  +  L+   NL +  LG  +    L D ++ L++  
Sbjct:   293 RMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSS-- 350

Query:   305 KLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
              L  L +  N+    LP  + NL   +  ++  NN ++G +P   + L NL  L V+ N+
Sbjct:   351 SLVSLSIRDNKISGSLPRDIGNL-VNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNK 409

Query:   365 LA----VTI--LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC 418
             L     +TI  L  L  + +  N   GTIPS LGNLT L Q  L  N+ +G IP  I + 
Sbjct:   410 LIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFSI 469

Query:   419 KNLI-LLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISS 477
               L  +L    N   G++P+++ ++               G  P+ +G+ + L  L + +
Sbjct:   470 PALSEILDVSHNNLEGSIPKEIGKL-KNIVEFHADSNKLSGENPSTIGECQLLQHLFLQN 528

Query:   478 NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
             N  +G IP  L     L+ L +  N+ +G IP +L  +  +  L+LS N+  G +P
Sbjct:   529 NFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMSLGDMPLLHSLNLSFNSFHGEVP 584

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 9.0e-64, P = 9.0e-64
 Identities = 167/538 (31%), Positives = 267/538 (49%)

Query:     4 QLQDPLGVTSSWNN-SINLCQWTGVTCGHRHQ-RVIGLDLRHQSIGGFLSPFVGNLSFLR 61
             Q  DPL     WN+ +IN C WTGVTC +    RVI L+L    + G +SP+ G    L 
Sbjct:    42 QEDDPL---RQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLI 98

Query:    62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE 121
              ++L++N+    IP  + NL  L++L L +N  +G+IP+ L    N+      +N+L G+
Sbjct:    99 HLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGD 158

Query:   122 SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI 181
              P  +GNL+  Q+L +A   L G +P+ +G L  +Q + +  N L G IP+   +  +L 
Sbjct:   159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query:   182 SFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
              F    N  +G  P  +  + +LE + +  N   G +P  +G  +  L++  +  N L G
Sbjct:   219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG-EMSQLQYLSLMANQLQG 277

Query:   241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
              +  SL++  NLQ LD++ N  +G++   F  +  L  L L  N+L           ++ 
Sbjct:   278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPK-----SIC 332

Query:   301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
             +N T LE LVL   +    +P  L+   + +  +   NN ++G IP+ +  LV L  L +
Sbjct:   333 SNNTNLEQLVLSGTQLSGEIPVELSKCQS-LKQLDLSNNSLAGSIPEALFELVELTDLYL 391

Query:   361 EFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS 414
               N L  T+      L +LQ L L+ N L+G +P  +  L  L    L  N   G IP  
Sbjct:   392 HNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQE 451

Query:   415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLD 474
             IGNC +L ++    N   G +P  + R+               G  PA +G    L  LD
Sbjct:   452 IGNCTSLKMIDMFGNHFEGEIPPSIGRL-KELNLLHLRQNELVGGLPASLGNCHQLNILD 510

Query:   475 ISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
             ++ N  SG IP++ G    LE L + +NS  G++P +L SL+++T ++LS N L+G I
Sbjct:   511 LADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.9e-63, P = 1.9e-63
 Identities = 165/531 (31%), Positives = 264/531 (49%)

Query:    11 VTSSWNN-SINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNS 69
             V   WN+ S + C WTGVTCG R   +IGL+L    + G +SP +G  + L  I+L++N 
Sbjct:    49 VLRDWNSGSPSYCNWTGVTCGGRE--IIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNR 106

Query:    70 FRAEIPHEVGNLFR-LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGN 128
                 IP  + NL   L++L L +N  SG IP+ L    NL   +  +N+L G  P   GN
Sbjct:   107 LVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGN 166

Query:   129 LLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLN 188
             L+  Q+L +A   L G +P+  G L  LQ + +  N L G IP+   +  +L  F    N
Sbjct:   167 LVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFN 226

Query:   189 QFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS 247
             + +G  P  +N + +L+ + +  N + G +P  +G +L ++++  + GN L G +   L+
Sbjct:   227 RLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLG-DLVSIQYLNLIGNQLQGLIPKRLT 285

Query:   248 NATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLE 307
                NLQ LD++ N  +G +   F  +  L +L L KN L           T+ +N T L+
Sbjct:   286 ELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK-----TICSNNTSLK 340

Query:   308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV 367
              L L   +    +P  ++N  +    +   NN ++G IPD +  LV L  L +  N L  
Sbjct:   341 QLFLSETQLSGEIPAEISNCQSLKL-LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEG 399

Query:   368 TI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNL 421
             T+      L +LQ   L+ N L+G +P  +G L  L    L  N   G +P  IGNC  L
Sbjct:   400 TLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRL 459

Query:   422 ILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISSNMFS 481
               +    N+ SG +P  + R+               G+ PA +G    +  +D++ N  S
Sbjct:   460 QEIDWYGNRLSGEIPSSIGRL-KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLS 518

Query:   482 GEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
             G IP++ G  T+LE   + +NS  G++P +L +LK++T ++ S N  +G I
Sbjct:   519 GSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSI 569

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	568
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-74
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-28
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  253 bits (647), Expect = 9e-74
 Identities = 180/556 (32%), Positives = 280/556 (50%), Gaps = 34/556 (6%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLR 61
           KS + DPL   S+WN+S ++C W G+TC +   RV+ +DL  ++I G +S  +  L +++
Sbjct: 38  KSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQ 96

Query: 62  SINLANNSFRAEIPHEVGNL-FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG 120
           +INL+NN     IP ++      L+ L L+NN F+G IP       NL   + SNN L+G
Sbjct: 97  TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSG 154

Query: 121 ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
           E P +IG+    ++L++  N L G++P S+ NL++L+ + +  N+L G+IP     +++L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 181 ISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
               +G N  SG  P  I  ++SL ++ +  N   G +P  +G NL NL++  +  N L+
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS 273

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
           G +  S+ +   L  LD++ N  SG++      LQNL  L+L  NN   +          
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VA 327

Query: 300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
           LT+  +L+VL L SN+F   +P +L      +T +    N ++G IP+G+ +  NL  L 
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL- 385

Query: 360 VEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCK 419
                             L  N L+G IP  LG    L +  L+ N   G +P       
Sbjct: 386 -----------------ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNM 479
            +  L    N   G +  +   + +L  +L+L+ N   G  P   G  K L +LD+S N 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQ-MLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486

Query: 480 FSGEIPTTLGCTS-LEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 538
           FSG +P  LG  S L  L + +N  +G IP  LSS K +  LDLS N LSG IP     +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 539 SFLSFLNLSYNHFESK 554
             LS L+LS N    +
Sbjct: 547 PVLSQLDLSQNQLSGE 562

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (376), Expect = 1e-37
 Identities = 126/438 (28%), Positives = 201/438 (45%), Gaps = 59/438 (13%)

Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           +G +  L+ I L  N+   EIP+E+G L  L +L L  N  +G IP++L    NL     
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
             NKL+G  P  I +L K   L++++N L G++P  +  L  L+ +++  N   G+IP  
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 174 RSHVRNLISFNVGLNQFSGMFP----PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR 229
            + +  L    +  N+FSG  P      NN++ L+   +  N   G +P +   +  NL 
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD---LSTNNLTGEIP-EGLCSSGNLF 383

Query: 230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTR 289
             I+  N+L G +  SL    +L+++ +  N FSG++   F  L  + +L++  NNL  R
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 290 TANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI 349
                   +   +   L++L L  N+F   LP S            FG+ +         
Sbjct: 444 IN------SRKWDMPSLQMLSLARNKFFGGLPDS------------FGSKR--------- 476

Query: 350 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLG 409
                                  L+ L L  N   G +P  LG+L+ L Q  L  N L G
Sbjct: 477 -----------------------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 410 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 469
            IP  + +CK L+ L    N+ SG +P     +  LS  L+LS N LSG  P  +G +++
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS-QLDLSQNQLSGEIPKNLGNVES 572

Query: 470 LVSLDISSNMFSGEIPTT 487
           LV ++IS N   G +P+T
Sbjct: 573 LVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (345), Expect = 9e-34
 Identities = 108/402 (26%), Positives = 176/402 (43%), Gaps = 58/402 (14%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL + ++ G +   +GNL  L+ + L  N     IP  + +L +L +L L++N  SG+I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
           P  + +  NL      +N   G+ P  + +L + Q+L +  N   G++P ++G  + L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSL 217
           ++++ N L G IP       NL    +  N   G  P  +    SL  + +  N + G L
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 218 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS 277
           P +    LP + F  IS NNL G +     +  +LQ L + RN F G +  +FG      
Sbjct: 421 PSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS----- 474

Query: 278 WLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
                                      +LE L L  N+F   +P  L +LS  M  +   
Sbjct: 475 --------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQ-LKLS 507

Query: 338 NNQISGFIPDGIA---NLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNL 394
            N++SG IPD ++    LV+L+                     L  N L G IP+    +
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLD---------------------LSHNQLSGQIPASFSEM 546

Query: 395 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMP 436
            +L+Q  L  N L G IP ++GN ++L+ +    N   G++P
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (301), Expect = 3e-28
 Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 38/337 (11%)

Query: 34  QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY 93
           Q++I LDL   S+ G +   V  L  L  ++L +N+F  +IP  + +L RLQ L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 94  FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEI---GNLLKFQLLN-------------- 136
           FSG+IP NL + +NL   + S N L GE P  +   GNL K  L +              
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 137 -------IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQ 189
                  + +N   G+LP+    L  +  ++++ N L GRI S +  + +L   ++  N+
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 190 FSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNA 249
           F G  P       LE + + RN + G++P  +G +L  L    +S N L+G + D LS+ 
Sbjct: 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSC 522

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
             L  LD++ N  SG++  +F  +  LS L+L +N L               N   +E L
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP---------KNLGNVESL 573

Query: 310 V---LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG 343
           V   +  N     LP + A L+   + +A GN  + G
Sbjct: 574 VQVNISHNHLHGSLPSTGAFLAINASAVA-GNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQ---WTGVTCG----HRHQRVIGLDLRHQSIGGFLSPF 53
           +KS L  PL     WN    + Q   W+G  C          + GL L +Q + GF+   
Sbjct: 380 LKSSLGLPLRF--GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND 437

Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           +  L  L+SINL+ NS R  IP  +G++  L+ L L+ N F+G IP +L + ++L     
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 114 SNNKLAGESPAEIGNLL 130
           + N L+G  PA +G  L
Sbjct: 498 NGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 32  RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTN 91
             +R+  LDL      G +   +G+LS L  + L+ N    EIP E+ +  +L +L L++
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 92  NYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIG 151
           N  SG+IP + S    L + + S N+L+GE P  +GN+     +NI+ NHL G LP S G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STG 591

Query: 152 NLSALQEINVNGN 164
              A+    V GN
Sbjct: 592 AFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query: 87  LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQL 146
           L L N    G IP ++S+  +L     S N + G  P  +G++   ++L+++ N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 147 PASIGNLSALQEINVNGNRLGGRIPS 172
           P S+G L++L+ +N+NGN L GR+P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSI 507
           L L +  L G  P ++ KL++L S+++S N   G IP +LG  TSLE L +  NSF GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 508 PSTLSSLKSITELDLSRNNLSGHIP 532
           P +L  L S+  L+L+ N+LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 433 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CT 491
           G +P  + ++  L  + NLS N + G+ P  +G + +L  LD+S N F+G IP +LG  T
Sbjct: 432 GFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 492 SLEYLCMQDNSFTGSIPSTL 511
           SL  L +  NS +G +P+ L
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR 174
           N  L G  P +I  L   Q +N++ N +RG +P S+G++++L+ ++++ N   G IP + 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 175 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY 213
             + +L   N+  N  SG  P     ++L    +HR  +
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP-----AALGGRLLHRASF 520

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 48/139 (34%)

Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           L +    LRG +P  I  L  LQ IN++GN + G IP                       
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP----------------------- 459

Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
           P + +I+SLE              LD            +S N+  GS+ +SL   T+L+ 
Sbjct: 460 PSLGSITSLEV-------------LD------------LSYNSFNGSIPESLGQLTSLRI 494

Query: 255 LDINRNLFSGKVSINFGGL 273
           L++N N  SG+V    GG 
Sbjct: 495 LNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 43/133 (32%)

Query: 333 GIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLG 392
           G+   N  + GFIP+ I+ L                  + LQ + L  N ++G IP  LG
Sbjct: 422 GLGLDNQGLRGFIPNDISKL------------------RHLQSINLSGNSIRGNIPPSLG 463

Query: 393 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 452
           ++T L    L  N   G+IP S+G       LT+ +                   +LNL+
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLG------QLTSLR-------------------ILNLN 498

Query: 453 DNLLSGHFPAEVG 465
            N LSG  PA +G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 25/107 (23%)

Query: 383 LQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI 442
           L+G IP+ +  L  L    L  N + GNIPPS+G+                         
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------------- 464

Query: 443 ITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG 489
           IT   +L+LS N  +G  P  +G+L +L  L+++ N  SG +P  LG
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 1  MKSQLQ-DPLGVTSSWN-NSINLCQWTGVTC 29
           KS L  DP G  SSWN +S + C WTGVTC
Sbjct: 11 FKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 215 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ 274
           G +P DI   L +L+   +SGN++ G++  SL + T+L+ LD++ N F+G +  + G L 
Sbjct: 432 GFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 275 NLSWLNLGKNNLGTR 289
           +L  LNL  N+L  R
Sbjct: 491 SLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 32/47 (68%)

Query: 505 GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
           G IP+ +S L+ +  ++LS N++ G+IP  L +++ L  L+LSYN F
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL    I    SP + NL  L++++L+ N   +++P  + NL  L NL L+ N  S  +
Sbjct: 145 LDLSDNKIESLPSP-LRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
           P  +   S L + + SNN +  E  + + NL     L ++ N L   LP SIGNLS L+ 
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 159 INVNGNRL 166
           ++++ N++
Sbjct: 260 LDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
           NL+   +S N LT     +     NL+ LD++ N  +      F GL +L  L+L  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	568
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
PLN03150	623	hypothetical protein; Provisional	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
PLN03150	623	hypothetical protein; Provisional	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG4341	483	consensus F-box protein containing LRR [General fu	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG4341	483	consensus F-box protein containing LRR [General fu	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.36
PRK15386	426	type III secretion protein GogB; Provisional	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.4
KOG4308	478	consensus LRR-containing protein [Function unknown	93.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.53
KOG4308	478	consensus LRR-containing protein [Function unknown	91.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.82
smart00370	26	LRR Leucine-rich repeats, outliers.	89.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.52
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.22
smart00370	26	LRR Leucine-rich repeats, outliers.	87.37
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.37

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-61  Score=542.20  Aligned_cols=549  Identities=34%  Similarity=0.551  Sum_probs=503.3

Q ss_pred             CcccCCCCCCCCCCCCCCCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccC-
Q 041497            1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVG-   79 (568)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~-   79 (568)
                      ||.++.||.++++.|+...+||.|.|+.|.. ..+++.||++++.+.+..+..+..+++|++|++++|.+.+.+|..+. 
T Consensus        37 ~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~  115 (968)
T PLN00113         37 FKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT  115 (968)
T ss_pred             HHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence            5778889999999998888999999999974 46899999999999998888999999999999999999888887655 


Q ss_pred             CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeE
Q 041497           80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI  159 (568)
Q Consensus        80 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  159 (568)
                      .+++|++|++++|.+++..|.  ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            999999999999999877775  568999999999999998899999999999999999999998999999999999999


Q ss_pred             EeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcc
Q 041497          160 NVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL  238 (568)
Q Consensus       160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (568)
                      ++++|.+.+..|..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l  272 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL  272 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCee
Confidence            999999998899999999999999999999987777 889999999999999999887887665 899999999999999


Q ss_pred             ccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497          239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA  318 (568)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (568)
                      .+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+.      .+..+++|+.|++++|.+.+
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV------ALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh------hHhcCCCCCEEECcCCCCcC
Confidence            988888899999999999999999988888899999999999999998765443      46788999999999999998


Q ss_pred             cCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh------ccCCCeeECccCccccccCcccc
Q 041497          319 VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLG  392 (568)
Q Consensus       319 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~  392 (568)
                      ..+..+..... ++.|++++|.+.+..|..+..+.+|+.++++.|.+....      +++|+.|++++|.+++..+..+.
T Consensus       347 ~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~  425 (968)
T PLN00113        347 EIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT  425 (968)
T ss_pred             cCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence            88887777654 999999999999999999999999999999999886433      78999999999999999999999


Q ss_pred             CcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcE
Q 041497          393 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS  472 (568)
Q Consensus       393 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~  472 (568)
                      .++.|+.+++++|.+++..+..+..+++|+.|++++|++.+..|..+. ...+ +.|++++|++++..|..+..+++|+.
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~  503 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRL-ENLDLSRNQFSGAVPRKLGSLSELMQ  503 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccc-eEEECcCCccCCccChhhhhhhccCE
Confidence            999999999999999998888888999999999999999888877553 3445 99999999999999999999999999


Q ss_pred             EecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcc
Q 041497          473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  551 (568)
Q Consensus       473 L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  551 (568)
                      |++++|++.+.+|..+. +++|+.|+|++|.+++.+|..|..+++|+.||+++|.+++.+|..+..+++|+.+++++|++
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            99999999999999887 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcccc
Q 041497          552 ESKSLFVWPFV  562 (568)
Q Consensus       552 ~~~~~~~~~~~  562 (568)
                      .+.+|...++.
T Consensus       584 ~~~~p~~~~~~  594 (968)
T PLN00113        584 HGSLPSTGAFL  594 (968)
T ss_pred             eeeCCCcchhc
Confidence            99999875543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-52  Score=469.90  Aligned_cols=509  Identities=29%  Similarity=0.469  Sum_probs=462.3

Q ss_pred             CCCeEEEEeccCCccccccCCcc-cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcE
Q 041497           32 RHQRVIGLDLRHQSIGGFLSPFV-GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVK  110 (568)
Q Consensus        32 ~~~~i~~L~l~~~~i~~~~~~~~-~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  110 (568)
                      ..+.++.|+|++|.+.+..+..+ ..+++|++|++++|.+.+.+|.  +.+++|++|++++|.+++..|..++.+++|++
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            35789999999999987766654 5999999999999999887775  46899999999999999889999999999999


Q ss_pred             EeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497          111 FEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF  190 (568)
Q Consensus       111 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (568)
                      |++++|.+.+.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            99999999888999999999999999999999989999999999999999999999989999999999999999999999


Q ss_pred             ccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCC
Q 041497          191 SGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN  269 (568)
Q Consensus       191 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~  269 (568)
                      .+..+ .+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            88777 899999999999999999888887776 8899999999999999888999999999999999999999888888


Q ss_pred             ccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhh
Q 041497          270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI  349 (568)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~  349 (568)
                      +..+++|+.|++++|.+....+.      .+..+++|+.|++++|++.+..+..+.... +++.+++++|.+.+..|..+
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~  400 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEIPK------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSL  400 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcCCh------HHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHH
Confidence            99999999999999998764442      467889999999999999988887776654 49999999999999999999


Q ss_pred             hhhccccccCccccccchh------hccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceE
Q 041497          350 ANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLIL  423 (568)
Q Consensus       350 ~~~~~L~~l~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  423 (568)
                      ..+++|+.+++++|.+...      .+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..|..+ ..++|+.
T Consensus       401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~  479 (968)
T PLN00113        401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLEN  479 (968)
T ss_pred             hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceE
Confidence            9999999999999988643      38899999999999999888888999999999999999988777655 4689999


Q ss_pred             EEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccc
Q 041497          424 LTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNS  502 (568)
Q Consensus       424 L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~  502 (568)
                      |++++|++.+..|..+..+..+ +.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+. +++|+.|+|++|+
T Consensus       480 L~ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        480 LDLSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             EECcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence            9999999999999999998888 9999999999999999999999999999999999999999988 9999999999999


Q ss_pred             ccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccc
Q 041497          503 FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES  553 (568)
Q Consensus       503 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  553 (568)
                      +++.+|..+.+++.|+.|++++|++.+.+|.. .....+......+|+.-|
T Consensus       559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc  608 (968)
T PLN00113        559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC  608 (968)
T ss_pred             ccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence            99999999999999999999999999888864 445566666778887544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-39  Score=307.25  Aligned_cols=399  Identities=22%  Similarity=0.215  Sum_probs=306.8

Q ss_pred             cEEeCCCCcCCCCCCcccccC--CCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEec
Q 041497           85 QNLTLTNNYFSGKIPTNLSRC--SNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVN  162 (568)
Q Consensus        85 ~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  162 (568)
                      ..|+++++.+.......+.+.  +.-+.|++++|++..+.+..|.++++|+.+++..|.+. .+|...+...+|+.|++.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence            345555555543333333322  23455777777777777777777888888888777776 566655555667888888


Q ss_pred             cCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccccc
Q 041497          163 GNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSL  242 (568)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  242 (568)
                      +|.+.....+.+..++.|+.||++.|.+..                        ++...|..-.++++|++++|.++...
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~------------------------i~~~sfp~~~ni~~L~La~N~It~l~  189 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISE------------------------IPKPSFPAKVNIKKLNLASNRITTLE  189 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhc------------------------ccCCCCCCCCCceEEeeccccccccc
Confidence            877776666667777777777777776653                        33333324456778888888877777


Q ss_pred             CccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCch
Q 041497          243 QDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPF  322 (568)
Q Consensus       243 ~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  322 (568)
                      ...|..+.+|..|.|++|.++..++..|..+++|+.|++..|.+......      .|..+++|+.+.+..|++....+.
T Consensus       190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l------tFqgL~Sl~nlklqrN~I~kL~DG  263 (873)
T KOG4194|consen  190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL------TFQGLPSLQNLKLQRNDISKLDDG  263 (873)
T ss_pred             cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh------hhcCchhhhhhhhhhcCcccccCc
Confidence            77777888888888888888877777788888888888888877765432      366778888888887777665444


Q ss_pred             hhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCccccccccc
Q 041497          323 SLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLL  402 (568)
Q Consensus       323 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  402 (568)
                      .|.++                                           .+++.|++..|+++..-..++-++++|+.|++
T Consensus       264 ~Fy~l-------------------------------------------~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  264 AFYGL-------------------------------------------EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             ceeee-------------------------------------------cccceeecccchhhhhhcccccccchhhhhcc
Confidence            44333                                           33455555555555555567788899999999


Q ss_pred             ccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccc
Q 041497          403 EVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSG  482 (568)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  482 (568)
                      ++|.+...-+++++.+++|++|++++|++....+..|..+..+ +.|+|++|+++.....+|..+++|++|||++|.++.
T Consensus       301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW  379 (873)
T ss_pred             chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence            9999988888899999999999999999988888888888877 999999999997777899999999999999999875


Q ss_pred             cCCC---ccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCC
Q 041497          483 EIPT---TLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       483 ~~~~---~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      .+.+   .|. +++|+.|++-||+++.+...+|..++.|++|||.+|.|-.+-|+.|+.+ .|++|.++.-.+-|.|.-.
T Consensus       380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence            5544   344 9999999999999998888899999999999999999998999999998 9999999999999999988


Q ss_pred             c
Q 041497          559 W  559 (568)
Q Consensus       559 ~  559 (568)
                      |
T Consensus       459 W  459 (873)
T KOG4194|consen  459 W  459 (873)
T ss_pred             H
Confidence            7

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-37  Score=293.37  Aligned_cols=385  Identities=19%  Similarity=0.218  Sum_probs=330.5

Q ss_pred             eEEEEeccCCccccccCCcccC--CCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497           35 RVIGLDLRHQSIGGFLSPFVGN--LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  112 (568)
Q Consensus        35 ~i~~L~l~~~~i~~~~~~~~~~--~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  112 (568)
                      ..+.||.+++.+.......+..  .+..+.|++++|++....+..|.++++|+.+++.+|.++ .+|.......+|+.|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            3455677776665433333321  246778999999999888888999999999999999998 7887666777899999


Q ss_pred             ccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497          113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG  192 (568)
Q Consensus       113 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (568)
                      |.+|.+...-.+.+..++.|+.|||+.|.++..-...|..-+++++|++++|.+++.....|..+.+|..|.++.|.++.
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence            99999988778889999999999999999987777778888899999999999998888889999999999999999998


Q ss_pred             CCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCcc
Q 041497          193 MFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFG  271 (568)
Q Consensus       193 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~  271 (568)
                      ... .|.++++|+.|++..|.+. .+....|+++++|+.|.+..|.+......+|..+.++++|+|+.|+++.....++.
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             cCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            877 8888999999999999886 45455667999999999999998877778888999999999999999988888889


Q ss_pred             CCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhh
Q 041497          272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN  351 (568)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~  351 (568)
                      +++.|+.|++++|.|..+..+.      +..+++|+.|++++|+++...+..+..+.. +++|+++.|.+......+|..
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~------WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDS------WSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             ccchhhhhccchhhhheeecch------hhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHH
Confidence            9999999999999999888764      456789999999999999998888888876 999999999998888888999


Q ss_pred             hccccccCccccccchhh---------ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCce
Q 041497          352 LVNLNALGVEFNQLAVTI---------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI  422 (568)
Q Consensus       352 ~~~L~~l~l~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  422 (568)
                      +.+|+.||++.|.++...         ++.|+.|.+.+|++.......|.+++.|++|++.+|.+.++.+.+|..+ +|+
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk  442 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK  442 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence            999999999999885433         8899999999999987777889999999999999999988899999888 888


Q ss_pred             EEEcccC
Q 041497          423 LLTTRKN  429 (568)
Q Consensus       423 ~L~l~~~  429 (568)
                      .|.+..-
T Consensus       443 ~Lv~nSs  449 (873)
T KOG4194|consen  443 ELVMNSS  449 (873)
T ss_pred             hhhhccc
Confidence            8877643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.4e-40  Score=299.18  Aligned_cols=488  Identities=25%  Similarity=0.404  Sum_probs=291.1

Q ss_pred             eEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEecc
Q 041497           35 RVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  114 (568)
Q Consensus        35 ~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  114 (568)
                      .+..+++++|.+.. ..+++.++.-+.++++++|.+. ..|.+++.+..++.++.++|.+. .+|+.+..+.+|+.++++
T Consensus        46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            34556666666553 3345666666777777777665 56666777777777777777766 666666677777777777


Q ss_pred             CCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCC
Q 041497          115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF  194 (568)
Q Consensus       115 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (568)
                      +|.+. ..+++++.+..|+.++..+|++. ..|.++..+.+|..+++.+|.+. ..|...-.++.|+++|...|-+...+
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCC
Confidence            77666 45666666667777777766666 56666666677777777776665 33333333666777777666666555


Q ss_pred             CCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCC
Q 041497          195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ  274 (568)
Q Consensus       195 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~  274 (568)
                      +.++.+.+|+.|++..|.+. .+| .+. ++..|++++++.|++.-........++++..|++.+|+++ ..|..+.-+.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            56666666666666666654 444 222 5566666666666665332333345666666666666665 3344455556


Q ss_pred             CCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc-ceEEEcccCcccCCCChhhhhhc
Q 041497          275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT-MTGIAFGNNQISGFIPDGIANLV  353 (568)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~l~~~~~~~~~~~~  353 (568)
                      +|.+|++++|.++..++.       ++++ +|+.|.+.+|.+..+-...+.+.... +++|.=   .+.+.   .+..-.
T Consensus       276 sL~rLDlSNN~is~Lp~s-------Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~d---glS~se  341 (565)
T KOG0472|consen  276 SLERLDLSNNDISSLPYS-------LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDD---GLSQSE  341 (565)
T ss_pred             hhhhhcccCCccccCCcc-------cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccC---CCCCCc
Confidence            666666666666665553       5555 56666666665544322222111100 111100   00000   000000


Q ss_pred             cccccCccccccc---hhhccCCCeeECccCccccccCccccCccc---ccccccccccccCCCCCCccCCCCceEEEcc
Q 041497          354 NLNALGVEFNQLA---VTILKSLQMLFLHENVLQGTIPSFLGNLTM---LTQRLLEVNDLLGNIPPSIGNCKNLILLTTR  427 (568)
Q Consensus       354 ~L~~l~l~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  427 (568)
                      .=+.-....-+..   .-...+.+.|++++-+++ .+|+....-..   .+..+++.|++. +.|..+..+..+.+.-+.
T Consensus       342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL  419 (565)
T ss_pred             ccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence            0000000000000   000334555555555554 33333222112   455556666654 344444443333333233


Q ss_pred             cCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccccccc
Q 041497          428 KNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGS  506 (568)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~  506 (568)
                      .++..+.+|..++.++++ +.|+|++|-+. ..|..++.+..|+.|+++.|+|. ..|.... ...++.+-.++|++...
T Consensus       420 snn~isfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             hcCccccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence            333344555666666666 77788888777 67777888888899999999887 7777766 67777777777888877


Q ss_pred             CCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCccc
Q 041497          507 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       507 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  552 (568)
                      .+.++.+|.+|++||+.+|.+. .+|..++++.+|++|+++||++.
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            7778999999999999999998 46778999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.4e-38  Score=286.51  Aligned_cols=478  Identities=22%  Similarity=0.318  Sum_probs=373.5

Q ss_pred             CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497           33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  112 (568)
Q Consensus        33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  112 (568)
                      ...++++++++|.... .+++++.+..+..+++++|++. .+|..+..+..|+.+++++|.+. ..++.++.+..|+.++
T Consensus        67 L~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD  143 (565)
T ss_pred             ccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence            4668899999998886 4567999999999999999998 78999999999999999999998 7888899999999999


Q ss_pred             ccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497          113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG  192 (568)
Q Consensus       113 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (568)
                      ..+|+++ ..|.++..+.+|..+++.+|++... |...-+++.|++|+..+|-+. .+|..++.+.+|..|++..|++..
T Consensus       144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             ccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc
Confidence            9999998 7889999999999999999999954 444445999999999999887 899999999999999999999986


Q ss_pred             CCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccC
Q 041497          193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG  272 (568)
Q Consensus       193 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~  272 (568)
                      .+ .|..+..|.++++..|.+. .+|....++++++.+||+++|++. ..|+.+..+++|+.|++++|.+++ .|..+++
T Consensus       221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn  296 (565)
T KOG0472|consen  221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGN  296 (565)
T ss_pred             CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence            54 8999999999999999887 788888889999999999999999 568888889999999999999984 4566889


Q ss_pred             CCCCcEEECCCCCCCCcCCCCchhhhcccCCCc---ccEEE-------eccCcccCc-----Cchhh--hcccccceEEE
Q 041497          273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK---LEVLV-------LDSNRFGAV-----LPFSL--ANLSTTMTGIA  335 (568)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~---L~~L~-------l~~~~~~~~-----~~~~~--~~~~~~l~~L~  335 (568)
                      + .|+.|-+.+|++.++...       +-.++.   |++|.       ++...-...     .++.+  .......+.|+
T Consensus       297 l-hL~~L~leGNPlrTiRr~-------ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~  368 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRRE-------IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD  368 (565)
T ss_pred             c-eeeehhhcCCchHHHHHH-------HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence            9 999999999999775432       111111   11110       111000000     00000  11112345556


Q ss_pred             cccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCc
Q 041497          336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI  415 (568)
Q Consensus       336 l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  415 (568)
                      ++.-+++....+.|..-+                -.-...++++.|++. ++|..+..+..+.+.-+..+++.+..+..+
T Consensus       369 ~s~~qlt~VPdEVfea~~----------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l  431 (565)
T KOG0472|consen  369 VSDKQLTLVPDEVFEAAK----------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL  431 (565)
T ss_pred             ccccccccCCHHHHHHhh----------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence            666555554444444432                123668888888887 677777777777666555555556777778


Q ss_pred             cCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccc
Q 041497          416 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLE  494 (568)
Q Consensus       416 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~  494 (568)
                      ..+++|..|++++|.+. .+|..+..+..+ +.+|++.|++. ..|..+-.+..++.+-.++|++...-++.+. +.+|.
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence            88999999999988766 688888888887 99999999998 7888888888899999999999855555455 99999


Q ss_pred             eeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCc
Q 041497          495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  550 (568)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  550 (568)
                      .|||.+|.+. .+|..+++|.+|++|++.+|++. ..++.+---.....+..-+++
T Consensus       509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr  562 (565)
T KOG0472|consen  509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR  562 (565)
T ss_pred             eeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence            9999999998 88889999999999999999998 444433333333333333333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.3e-34  Score=287.32  Aligned_cols=481  Identities=27%  Similarity=0.341  Sum_probs=328.6

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      ..++.|+++.|..-..+.+++.+..+|+.|++++|.+. .+|..+..+++|+.|+++.|.+. ..|....++.+|+++.|
T Consensus        21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence            34666677666555544555555555777777777665 56667777777777777777776 55666667777777777


Q ss_pred             cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      ..|++. ..|..+..+.+|++|+++.|... ..|..+..+..++.+..++|.....    ++... ++.+++..+.+.+.
T Consensus        99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~  171 (1081)
T KOG0618|consen   99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS  171 (1081)
T ss_pred             ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence            777666 56777777777777777777666 5666666677777777776622111    22222 56666666666655


Q ss_pred             CC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccC
Q 041497          194 FP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG  272 (568)
Q Consensus       194 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~  272 (568)
                      +. .+..+++  .|+++.|.+. .....   .+++|+.+....|++....    ..-++|+.|+.++|.+.....  ...
T Consensus       172 ~~~~i~~l~~--~ldLr~N~~~-~~dls---~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~  239 (1081)
T KOG0618|consen  172 FLIDIYNLTH--QLDLRYNEME-VLDLS---NLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPV  239 (1081)
T ss_pred             hhcchhhhhe--eeecccchhh-hhhhh---hccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccc
Confidence            54 4555444  5777776654 22221   4566777766666655321    123567777777777763322  234


Q ss_pred             CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhh
Q 041497          273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL  352 (568)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~  352 (568)
                      ..+|++++++.+++...+       .++..|.+|+.+.+..|+++.. +..+.... +++.+....|.+.. +|......
T Consensus       240 p~nl~~~dis~n~l~~lp-------~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~-~L~~l~~~~nel~y-ip~~le~~  309 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLP-------EWIGACANLEALNANHNRLVAL-PLRISRIT-SLVSLSAAYNELEY-IPPFLEGL  309 (1081)
T ss_pred             cccceeeecchhhhhcch-------HHHHhcccceEecccchhHHhh-HHHHhhhh-hHHHHHhhhhhhhh-CCCccccc
Confidence            467888888888877665       2467788888888888887543 33333332 37777777777764 45566777


Q ss_pred             ccccccCccccccchhh-------ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEE
Q 041497          353 VNLNALGVEFNQLAVTI-------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT  425 (568)
Q Consensus       353 ~~L~~l~l~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  425 (568)
                      +.|++|++..|++....       ...|..++.+.+.+.......=..+..|+.|++.+|.+++.....+.+..+|+.|+
T Consensus       310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            78888888888774322       23366666676766643333334477889999999999888888888999999999


Q ss_pred             cccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccc
Q 041497          426 TRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTG  505 (568)
Q Consensus       426 l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~  505 (568)
                      +++|++.......+.++..+ +.|+||+|+++ .+|..+..++.|++|...+|++. .+|....++.|+.+|++.|+++.
T Consensus       390 LsyNrL~~fpas~~~kle~L-eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  390 LSYNRLNSFPASKLRKLEEL-EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ecccccccCCHHHHhchHHh-HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhh
Confidence            99998876655566677777 88899999998 77788899999999999999987 78855559999999999998875


Q ss_pred             c-CCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccC
Q 041497          506 S-IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN  549 (568)
Q Consensus       506 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  549 (568)
                      . +++...+ |+|+.||++||.-.......|..++++...++.-+
T Consensus       467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            3 2333333 78999999999865556667777788877777766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=9.9e-34  Score=284.74  Aligned_cols=459  Identities=27%  Similarity=0.333  Sum_probs=373.2

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      -++++||+++|++.. .+..+..+.+|+.|+++.|.+. ..|.++.++.+|++++|.+|.+. ..|..+..+.+|++|++
T Consensus        45 v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   45 VKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeeEEeecccccccc-CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence            449999999999886 5667889999999999999987 67889999999999999999988 89999999999999999


Q ss_pred             cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      +.|.+. ..|..+..++.+..+..++|...    ..++... ++.+++..+.+.+.++..+..++.  .+++++|.+.  
T Consensus       122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--  191 (1081)
T KOG0618|consen  122 SFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--  191 (1081)
T ss_pred             chhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--
Confidence            999988 77889999999999999998221    2233333 899999999999888888888877  7999999887  


Q ss_pred             CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497          194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL  273 (568)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~  273 (568)
                      ..++.++..|+.++...+.+.....     ..++++.|+.+.|.++...+  .....+|+.++++++.+...+ .+++.+
T Consensus       192 ~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~  263 (1081)
T KOG0618|consen  192 VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGAC  263 (1081)
T ss_pred             hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhc
Confidence            4478888899999888887652111     45789999999998884322  234568999999999998665 889999


Q ss_pred             CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhc
Q 041497          274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLV  353 (568)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~  353 (568)
                      .+|+.++...|.+...+.       .+...++|+.+.+..|++..+.+. ..+. ..+++|++..|++....+..+....
T Consensus       264 ~nle~l~~n~N~l~~lp~-------ri~~~~~L~~l~~~~nel~yip~~-le~~-~sL~tLdL~~N~L~~lp~~~l~v~~  334 (1081)
T KOG0618|consen  264 ANLEALNANHNRLVALPL-------RISRITSLVSLSAAYNELEYIPPF-LEGL-KSLRTLDLQSNNLPSLPDNFLAVLN  334 (1081)
T ss_pred             ccceEecccchhHHhhHH-------HHhhhhhHHHHHhhhhhhhhCCCc-cccc-ceeeeeeehhccccccchHHHhhhh
Confidence            999999999999865443       355678899999999988775433 2222 3499999999999876665555554


Q ss_pred             c-ccccCccccccchhh------ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEc
Q 041497          354 N-LNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT  426 (568)
Q Consensus       354 ~-L~~l~l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  426 (568)
                      . ++.++.+.+.+....      .+.|+.|++.+|.+++.....+.++..|+.|++++|++.......+.++..|+.|++
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            4 777777777764332      788999999999999988888999999999999999998777778899999999999


Q ss_pred             ccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccc-cCCCcccccccceeecccccccc
Q 041497          427 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSG-EIPTTLGCTSLEYLCMQDNSFTG  505 (568)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~~~~L~~L~Ls~n~l~~  505 (568)
                      ++|++. .+|+....+..+ +.|....|++. ..| .++.+++|+.+|+|.|.++. .+|.....++|++||++||.-..
T Consensus       415 SGNkL~-~Lp~tva~~~~L-~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRL-HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhh-HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            999987 466888888888 89999999998 667 89999999999999999872 23333335999999999997433


Q ss_pred             cCCccCcCCCCCCEEeCCCCc
Q 041497          506 SIPSTLSSLKSITELDLSRNN  526 (568)
Q Consensus       506 ~~~~~~~~l~~L~~L~l~~n~  526 (568)
                      .....|..++.+...++.-++
T Consensus       491 ~d~~~l~~l~~l~~~~i~~~~  511 (1081)
T KOG0618|consen  491 FDHKTLKVLKSLSQMDITLNN  511 (1081)
T ss_pred             cchhhhHHhhhhhheecccCC
Confidence            444567777788888887773

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.5e-31  Score=256.21  Aligned_cols=362  Identities=23%  Similarity=0.352  Sum_probs=260.2

Q ss_pred             CCCCCCcEEeCCCCcCC-CCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCC
Q 041497           79 GNLFRLQNLTLTNNYFS-GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ  157 (568)
Q Consensus        79 ~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  157 (568)
                      +-++..+-+|+++|.++ +.+|.....++.++.|.+.+.++. .+|+.++.+.+|++|++++|.+. .+-..+..+|.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            44666777888888887 678888999999999999988887 78999999999999999999887 4556688889999


Q ss_pred             eEEeccCCCCC-CCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCC
Q 041497          158 EINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN  236 (568)
Q Consensus       158 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  236 (568)
                      .+++.+|++.. -+|..+.++..|..||++.|++.+.+..+...+++-+|+++.|++. .+|-..+.++..|-.||+++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence            99999988765 5788888999999999999998877767778888888888888876 777777777888888888888


Q ss_pred             ccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcc
Q 041497          237 NLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF  316 (568)
Q Consensus       237 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  316 (568)
                      .+. ..|.....+..|++|+|++|.+....-..+..+++|.+|.+++.+-+-..     ++..+..+.+           
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N-----~Ptsld~l~N-----------  223 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN-----IPTSLDDLHN-----------  223 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc-----CCCchhhhhh-----------
Confidence            877 44555667778888888888876554455556666666666654432211     1112333333           


Q ss_pred             cCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-----ccCCCeeECccCccccccCccc
Q 041497          317 GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENVLQGTIPSFL  391 (568)
Q Consensus       317 ~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~  391 (568)
                                    +..+|++.|.+. .+|+.+.++++|+.|++++|+++...     ..+|++|+++.|+++ ..|+.+
T Consensus       224 --------------L~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  224 --------------LRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             --------------hhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHH
Confidence                          445555555544 35677777777777777777665332     567888888888887 677788


Q ss_pred             cCcccccccccccccccC-CCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCC
Q 041497          392 GNLTMLTQRLLEVNDLLG-NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNL  470 (568)
Q Consensus       392 ~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L  470 (568)
                      +.++.|+.|.+.+|+++- .+|+.++.+..|+++...+|.+. .+|+.++.+..+ +.|.|++|++- ..|+++.-++.|
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL-~kL~L~~NrLi-TLPeaIHlL~~l  364 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL-QKLKLDHNRLI-TLPEAIHLLPDL  364 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH-HHhccccccee-echhhhhhcCCc
Confidence            888888888888887753 35667777777777766666554 455566666555 55666666555 555556666666


Q ss_pred             cEEecCCCc
Q 041497          471 VSLDISSNM  479 (568)
Q Consensus       471 ~~L~ls~n~  479 (568)
                      +.||+..|.
T Consensus       365 ~vLDlreNp  373 (1255)
T KOG0444|consen  365 KVLDLRENP  373 (1255)
T ss_pred             ceeeccCCc
Confidence            666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.7e-31  Score=257.38  Aligned_cols=362  Identities=23%  Similarity=0.360  Sum_probs=188.3

Q ss_pred             CCCcEEeccCCccc-ccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEe
Q 041497          106 SNLVKFEASNNKLA-GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFN  184 (568)
Q Consensus       106 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  184 (568)
                      +=.+-+|+++|.++ +..|.....|+.++-|.|....+. .+|+.++.+.+|++|.+.+|++.                 
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-----------------   68 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-----------------   68 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-----------------
Confidence            33444556666555 344555555555555555555554 45555555555555555555544                 


Q ss_pred             ecccccccCCCCCCCCCCccEEEeeccccc-ccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497          185 VGLNQFSGMFPPINNISSLEYIFIHRNIYH-GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS  263 (568)
Q Consensus       185 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~  263 (568)
                             .....+..+|.|+.+.+..|++. ..+|..+| .+..|+.||++.|++. ..|..+....++-.|+|++|+|.
T Consensus        69 -------~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   69 -------SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             -------hhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence                   33333444444444444444433 25677777 7777888888888777 45666666777777888888877


Q ss_pred             ccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcc-c
Q 041497          264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI-S  342 (568)
Q Consensus       264 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l-~  342 (568)
                      .++...|-+++.|-.|++++|.+...++.       .+.+..|+.|++++|.+....-..+... +++..|.+++.+- .
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ-------~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQ-------IRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTL  211 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhhhcCHH-------HHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchh
Confidence            66655566677777777777777666553       5556666666666665432111111111 1133333333221 1


Q ss_pred             CCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCce
Q 041497          343 GFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI  422 (568)
Q Consensus       343 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  422 (568)
                      ..+|.++..                  +.+|..++++.|.+. .+|+++-.+++|+.|++++|+++. .........+|+
T Consensus       212 ~N~Ptsld~------------------l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lE  271 (1255)
T KOG0444|consen  212 DNIPTSLDD------------------LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLE  271 (1255)
T ss_pred             hcCCCchhh------------------hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhh
Confidence            122223322                  223444444444444 445555555555555555555542 222223344455


Q ss_pred             EEEcccCCCCCCCCCchhHHhhhceEEEccCCccc-ccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccc
Q 041497          423 LLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLS-GHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQD  500 (568)
Q Consensus       423 ~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~  500 (568)
                      +|++++|++. .+|+.++.+.++ +.|.+.+|+++ .-+|..++++.+|+++..++|.+. .+|...+ |..|+.|.|++
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL-~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKL-TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHH-HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence            5555555444 344455555444 44445444433 123444455555555555555544 4444444 55555555555


Q ss_pred             ccccccCCccCcCCCCCCEEeCCCCc
Q 041497          501 NSFTGSIPSTLSSLKSITELDLSRNN  526 (568)
Q Consensus       501 n~l~~~~~~~~~~l~~L~~L~l~~n~  526 (568)
                      |++. ..|+++.-++.|++||+.+|+
T Consensus       349 NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  349 NRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccee-echhhhhhcCCcceeeccCCc
Confidence            5544 444455555555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=6.2e-28  Score=220.99  Aligned_cols=286  Identities=21%  Similarity=0.240  Sum_probs=225.7

Q ss_pred             eeceeCCCC---------CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCC-CcC
Q 041497           25 TGVTCGHRH---------QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTN-NYF   94 (568)
Q Consensus        25 ~~~~c~~~~---------~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~-n~~   94 (568)
                      ..|+|.++.         ...+.|+|..|+|+..++.+|..+++||+||+|+|.|+.+.|++|.++..|.+|-+.+ |+|
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            458887633         5688899999999999999999999999999999999999999999999988887766 899


Q ss_pred             CCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC------
Q 041497           95 SGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG------  168 (568)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~------  168 (568)
                      +....+.|+++..|+.|.+.-|++.......|..+++|..|.+.+|.+...-...|..+..++.+.+..|++..      
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence            96667789999999999999999998888999999999999999999985555588999999999998887421      


Q ss_pred             ------CCCccccccccCcEEeecccccccCCC--CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccc
Q 041497          169 ------RIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG  240 (568)
Q Consensus       169 ------~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (568)
                            ..|..++..+......+.+..+....+  ..+.+..+..--...+...+..|...|.++++|++|++++|++++
T Consensus       209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence                  122222333333333333333332222  222222332222334444456777778899999999999999999


Q ss_pred             ccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcc
Q 041497          241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF  316 (568)
Q Consensus       241 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  316 (568)
                      +-..+|.+...+++|.|.+|++..+....|.++..|+.|++.+|+|+...+.      .|....+|..|.+-.|.+
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~------aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG------AFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc------cccccceeeeeehccCcc
Confidence            8889999999999999999999888888899999999999999999998876      366778888888877765

>PLN03210 Resistant to P

Probab=99.89  E-value=5.9e-22  Score=222.63  Aligned_cols=382  Identities=16%  Similarity=0.178  Sum_probs=240.9

Q ss_pred             CCCCCCCCCCCCCCCCceeeeceeCCCCCeEEEEeccCCccc--cccCCcccCCCCCceeeccCCc------ccccCCcc
Q 041497            6 QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIG--GFLSPFVGNLSFLRSINLANNS------FRAEIPHE   77 (568)
Q Consensus         6 ~~~~~~~~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~--~~~~~~~~~~~~L~~L~ls~~~------~~~~~~~~   77 (568)
                      .+|..+...|+.. ++|.--  .-......++.+.+....+.  .....+|..+++|+.|.+..+.      +...+|..
T Consensus       507 ~~~~~r~~l~~~~-di~~vl--~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~  583 (1153)
T PLN03210        507 NEPGEREFLVDAK-DICDVL--EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG  583 (1153)
T ss_pred             CCCCcceeEeCHH-HHHHHH--HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc
Confidence            3566666667542 444311  01112345665554433333  2234568899999999997653      23347777


Q ss_pred             cCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCC
Q 041497           78 VGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL  156 (568)
Q Consensus        78 ~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  156 (568)
                      +..++ +|+.|.+.++.+. .+|..| ...+|+.|++.+|++. .++.++..+++|+.|+++++...+.+| .+..+++|
T Consensus       584 ~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L  659 (1153)
T PLN03210        584 FDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL  659 (1153)
T ss_pred             hhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence            77775 6999999999887 778777 5689999999999987 577788889999999999876554555 47889999


Q ss_pred             CeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCC
Q 041497          157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN  236 (568)
Q Consensus       157 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  236 (568)
                      ++|++++|.....+|..+..+++|+.|++++|...+..+...++++|+.|++++|.....+|.    ...+|+.|+++++
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n  735 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDET  735 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCC
Confidence            999999987767888889999999999999886555555333678888888887765444443    2456777888777


Q ss_pred             ccccccCccCCCCCCCCeEecCCCccccc-------ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497          237 NLTGSLQDSLSNATNLQKLDINRNLFSGK-------VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL  309 (568)
Q Consensus       237 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  309 (568)
                      .+.. .|..+ .+++|+.|++.++.....       .+..+...++|+.|++++|......+      ..+..+++|+.|
T Consensus       736 ~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L  807 (1153)
T PLN03210        736 AIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHL  807 (1153)
T ss_pred             cccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEE
Confidence            7653 34333 456677777766432111       11112223455556655554332211      124455555555


Q ss_pred             EeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCc
Q 041497          310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPS  389 (568)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  389 (568)
                      ++++|...+..|... . ..+++.|++++|......|.                     ..++|++|++++|.++ .+|.
T Consensus       808 ~Ls~C~~L~~LP~~~-~-L~sL~~L~Ls~c~~L~~~p~---------------------~~~nL~~L~Ls~n~i~-~iP~  863 (1153)
T PLN03210        808 EIENCINLETLPTGI-N-LESLESLDLSGCSRLRTFPD---------------------ISTNISDLNLSRTGIE-EVPW  863 (1153)
T ss_pred             ECCCCCCcCeeCCCC-C-ccccCEEECCCCCccccccc---------------------cccccCEeECCCCCCc-cChH
Confidence            555543222222221 1 12244445444432211111                     1356778888887776 4666


Q ss_pred             cccCcccccccccccccccCCCCCCccCCCCceEEEcccCC
Q 041497          390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK  430 (568)
Q Consensus       390 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  430 (568)
                      ++..+++|+.|++++|.-...++.....+++|+.+++++|.
T Consensus       864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            77778888888887765544566666677778888877775

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=9.2e-21  Score=213.06  Aligned_cols=336  Identities=19%  Similarity=0.214  Sum_probs=235.4

Q ss_pred             CCCCCCCccEEEeeccc------ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCC
Q 041497          196 PINNISSLEYIFIHRNI------YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN  269 (568)
Q Consensus       196 ~l~~~~~L~~L~l~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~  269 (568)
                      .+..+++|+.|.+..+.      ....+|..+..-.++|+.|++.++.+. ..|..+ .+.+|+.|++.++.+.. .+..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccc
Confidence            46667777777775442      122345544423346888888888776 445555 45788888888888763 3445


Q ss_pred             ccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhh
Q 041497          270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI  349 (568)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~  349 (568)
                      +..+++|+.++++++......+       .+..+++|+.|++.+|......|..+..+.. |+.|++++|.....+|..+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-------DLSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-------ccccCCcccEEEecCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcC
Confidence            6778888888888765333222       2556788888888887665556666666544 8888888875544555544


Q ss_pred             hhhccccccCccccccchh---hccCCCeeECccCccccccCccccCccccccccccccccc-------CCCCCCccCCC
Q 041497          350 ANLVNLNALGVEFNQLAVT---ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL-------GNIPPSIGNCK  419 (568)
Q Consensus       350 ~~~~~L~~l~l~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~l~~~~  419 (568)
                       .+++|+.|++++|.....   ..++|++|++++|.+. .+|..+ .+++|+.|.+..+...       ...+.....++
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             -CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence             677888888888754322   2568889999988876 344433 4677888877664321       11111223357


Q ss_pred             CceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecc
Q 041497          420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQ  499 (568)
Q Consensus       420 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls  499 (568)
                      +|+.|++++|.....+|..+.++..+ +.|++++|..-+.+|... .+++|+.|++++|.....+|..  .++|+.|+|+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECC
Confidence            89999999998888888888888777 899998875433566554 6889999999998644455543  4789999999


Q ss_pred             cccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCc
Q 041497          500 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  550 (568)
Q Consensus       500 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  550 (568)
                      +|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|+
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99998 778889999999999999976444567778888999999999885

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=4.8e-24  Score=195.63  Aligned_cols=271  Identities=19%  Similarity=0.215  Sum_probs=187.2

Q ss_pred             CCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC-CcccccCchhhcCcCcCceeec
Q 041497           59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN-NKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      ....|.+..|.|+..-+.+|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+++...-..|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567789999999977777999999999999999999999999999999988887777 8898666678899999999999


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEE----------
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIF----------  207 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~----------  207 (568)
                      ..|.+.....+.|..+++|..|.+.+|.+...-..++..+..++.+.+..|.+..    .++++.+....          
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc----ccccchhhhHHhhchhhcccc
Confidence            9999988888899999999999999998874333477888888988888776442    22333322211          


Q ss_pred             -------eecccccccCCCccc-CCCCCcceEeecCCccccccC-ccCCCCCCCCeEecCCCcccccccCCccCCCCCcE
Q 041497          208 -------IHRNIYHGSLPLDIG-VNLPNLRFFIISGNNLTGSLQ-DSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSW  278 (568)
Q Consensus       208 -------l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~  278 (568)
                             +....+. .++..-+ +....+..=-.+.+....+.| ..|..+++|+.|+|++|+++.+.+.+|.....+++
T Consensus       224 rc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  224 RCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             eecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence                   1111111 1111111 011111111111222222222 24566777777888888777777777777777777


Q ss_pred             EECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcc
Q 041497          279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI  341 (568)
Q Consensus       279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l  341 (568)
                      |.+..|.+......      .|..+..|+.|++++|+++.+.+..|..... +.+|.+-.|.+
T Consensus       303 L~L~~N~l~~v~~~------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~-l~~l~l~~Np~  358 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSG------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFS-LSTLNLLSNPF  358 (498)
T ss_pred             hhcCcchHHHHHHH------hhhccccceeeeecCCeeEEEecccccccce-eeeeehccCcc
Confidence            77777777665443      3667777777777777777766666666544 67777666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=7.3e-19  Score=183.62  Aligned_cols=263  Identities=25%  Similarity=0.254  Sum_probs=141.7

Q ss_pred             CCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCc
Q 041497          226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK  305 (568)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (568)
                      ..-..|+++++.++ .+|..+.  ++|+.|++.+|+++.++.    ..++|++|++++|+++.++.          ..++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----------lp~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----------LPPG  263 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----------cccc
Confidence            34567888888887 4555443  478889999988875432    25788888888888886542          2367


Q ss_pred             ccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh--hccCCCeeECccCcc
Q 041497          306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT--ILKSLQMLFLHENVL  383 (568)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~L~~L~l~~~~~  383 (568)
                      |+.|++.+|.+..+..     .+.+++.|++++|.++.. |..   .++|+.|++++|++...  ...+|+.|++++|.+
T Consensus       264 L~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~L-P~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        264 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQL  334 (788)
T ss_pred             cceeeccCCchhhhhh-----chhhcCEEECcCCccccc-ccc---ccccceeECCCCccccCCCCcccccccccccCcc
Confidence            8888888888765322     234577888888877743 322   24555666666555432  133455555555555


Q ss_pred             ccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchh
Q 041497          384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE  463 (568)
Q Consensus       384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~  463 (568)
                      +. ++. +  ..+|+.|++++|+++. +|..   ..+|+.|++++|.+.. +|...   .. ++.|++++|.+++ .|..
T Consensus       335 ~~-LP~-l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~-L~~LdLs~N~Lt~-LP~l  400 (788)
T PRK15387        335 TS-LPT-L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SG-LKELIVSGNRLTS-LPVL  400 (788)
T ss_pred             cc-ccc-c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cc-cceEEecCCcccC-CCCc
Confidence            42 221 1  1245555555555543 2211   2344455555555442 22211   11 2445555555542 2211


Q ss_pred             hhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccc
Q 041497          464 VGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL  535 (568)
Q Consensus       464 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  535 (568)
                         .++|+.|++++|+++ .+|..  ..+|+.|++++|+++ .+|..+.+++.|+.|++++|++++..+..+
T Consensus       401 ---~s~L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        401 ---PSELKELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ---ccCCCEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence               234555555555554 23332  234455555555554 444445555555555555555554444333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=1.3e-18  Score=181.68  Aligned_cols=254  Identities=22%  Similarity=0.223  Sum_probs=103.5

Q ss_pred             cEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCC
Q 041497          204 EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK  283 (568)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~  283 (568)
                      ..|+++.+.++ .+|..+.   ++|+.|++.+|.++. +|.   .+++|++|++++|+++.++.    ..++|+.|++.+
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----cccccceeeccC
Confidence            34444444443 3443332   244455555554442 221   13445555555555443221    123445555555


Q ss_pred             CCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcccc
Q 041497          284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN  363 (568)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~  363 (568)
                      |.+..++.          ...+|+.|++++|+++.+..     .+.+|+.|++++|.+.+. |..   ...|+.|++++|
T Consensus       272 N~L~~Lp~----------lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N  332 (788)
T PRK15387        272 NPLTHLPA----------LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNN  332 (788)
T ss_pred             Cchhhhhh----------chhhcCEEECcCCccccccc-----cccccceeECCCCccccC-CCC---cccccccccccC
Confidence            54443221          11334445555554443221     112345555555544432 211   123444444444


Q ss_pred             ccchhh--ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhH
Q 041497          364 QLAVTI--LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR  441 (568)
Q Consensus       364 ~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  441 (568)
                      .+....  .++|+.|++++|.++. +|..   ..+|+.|++++|+++. +|..   ..+|+.|++++|.+.. +|...  
T Consensus       333 ~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~--  401 (788)
T PRK15387        333 QLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP--  401 (788)
T ss_pred             ccccccccccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc--
Confidence            443211  2345555555555442 2211   1234444455544442 2211   1234555555554442 22111  


Q ss_pred             HhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccccccc
Q 041497          442 IITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGS  506 (568)
Q Consensus       442 ~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~  506 (568)
                       .. ++.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+. +++|+.|+|++|++++.
T Consensus       402 -s~-L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        402 -SE-LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             -cC-CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence             11 2444555555442 2221   123444555555554 3444443 45555555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=3.9e-16  Score=164.44  Aligned_cols=230  Identities=22%  Similarity=0.370  Sum_probs=134.2

Q ss_pred             ceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCC
Q 041497           27 VTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCS  106 (568)
Q Consensus        27 ~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  106 (568)
                      ..|..  ...+.|+++++.+...+ ..+.  ++++.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  +
T Consensus       173 ~~Cl~--~~~~~L~L~~~~LtsLP-~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~  241 (754)
T PRK15370        173 RDCLK--NNKTELRLKILGLTTIP-ACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--D  241 (754)
T ss_pred             Hhhcc--cCceEEEeCCCCcCcCC-cccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--c
Confidence            35643  45677888887777543 2232  46888888888887 4665543  57888888888887 5565443  4


Q ss_pred             CCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeec
Q 041497          107 NLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG  186 (568)
Q Consensus       107 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  186 (568)
                      +|+.|++++|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|.+. .+|..+.  +.|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence            6888888888877 5565553  47888888888777 4565543  47888888888776 3444332  356666777


Q ss_pred             ccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccc
Q 041497          187 LNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKV  266 (568)
Q Consensus       187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~  266 (568)
                      +|.+......+  .++|+.|++++|.++ .+|..+   .++|+.|++++|.+.. +|..+  .++|+.|++++|.+..++
T Consensus       313 ~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        313 SNSLTALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLP  383 (754)
T ss_pred             CCccccCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCC
Confidence            66665432211  145555555555554 233322   1355555555555542 23222  234555555555554322


Q ss_pred             cCCccCCCCCcEEECCCCCCCC
Q 041497          267 SINFGGLQNLSWLNLGKNNLGT  288 (568)
Q Consensus       267 ~~~~~~~~~L~~L~l~~~~~~~  288 (568)
                      + .+.  +.|+.|++++|++..
T Consensus       384 ~-~l~--~sL~~LdLs~N~L~~  402 (754)
T PRK15370        384 E-NLP--AALQIMQASRNNLVR  402 (754)
T ss_pred             H-hHH--HHHHHHhhccCCccc
Confidence            2 111  234555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=4.3e-16  Score=164.14  Aligned_cols=257  Identities=19%  Similarity=0.325  Sum_probs=156.1

Q ss_pred             CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497           82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV  161 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  161 (568)
                      .+...|+++++.++ .+|..+.  ++|+.|++++|+++ .+|..+.  .+|++|++++|.++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            34567777777776 4555442  46777777777776 4454443  47777777777776 3454443  46777777


Q ss_pred             ccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc
Q 041497          162 NGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS  241 (568)
Q Consensus       162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  241 (568)
                      ++|.+. .+|..+.  .+|+.|++++|.+......+.  ++|+.|++++|.++ .+|..+   .++|+.|++++|.+.. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc-
Confidence            777766 5555443  367777777776664322232  46777777777665 344332   2357777777777764 


Q ss_pred             cCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCc
Q 041497          242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP  321 (568)
Q Consensus       242 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (568)
                      .|..+  .++|+.|++++|.++++ |..+  .++|+.|++++|++..++..       +  .++|+.|++++|.++.+.+
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~~-------l--p~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPET-------L--PPTITTLDVSRNALTNLPE  384 (754)
T ss_pred             CCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCChh-------h--cCCcCEEECCCCcCCCCCH
Confidence            33322  35677888888877653 3323  25778888888877654321       1  2567888888887776433


Q ss_pred             hhhhcccccceEEEcccCcccCCCChhhhh----hccccccCccccccchhhccCCCee
Q 041497          322 FSLANLSTTMTGIAFGNNQISGFIPDGIAN----LVNLNALGVEFNQLAVTILKSLQML  376 (568)
Q Consensus       322 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~----~~~L~~l~l~~~~~~~~~~~~L~~L  376 (568)
                       .+.   ..++.|++++|.+.. +|..+..    .+.+..+++.+|.+....+++|+.+
T Consensus       385 -~l~---~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L  438 (754)
T PRK15370        385 -NLP---AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL  438 (754)
T ss_pred             -hHH---HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence             222   237777888877763 3443333    3455666666666665555555555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=3e-18  Score=167.94  Aligned_cols=281  Identities=21%  Similarity=0.275  Sum_probs=147.6

Q ss_pred             EEeccCCccccc-cCCcccCCCCCceeeccCCccccc----CCcccCCCCCCcEEeCCCCcCCC------CCCcccccCC
Q 041497           38 GLDLRHQSIGGF-LSPFVGNLSFLRSINLANNSFRAE----IPHEVGNLFRLQNLTLTNNYFSG------KIPTNLSRCS  106 (568)
Q Consensus        38 ~L~l~~~~i~~~-~~~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~  106 (568)
                      .|+|.++.+.+. ....+..+.+|++|+++++.++..    ++..+...+.+++++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            356666666532 233455667788888888776432    44455667778888887776652      1123345566


Q ss_pred             CCcEEeccCCcccccCchhhcCcCc---CceeecccccCCC----CCCcccCCC-CCCCeEEeccCCCCCC----CCccc
Q 041497          107 NLVKFEASNNKLAGESPAEIGNLLK---FQLLNIAENHLRG----QLPASIGNL-SALQEINVNGNRLGGR----IPSTR  174 (568)
Q Consensus       107 ~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~~~l~~----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~l  174 (568)
                      +|+.|++++|.+....+..+..+.+   |++|++++|.+.+    .+...+..+ ++|++|++++|.+.+.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            7777777777665444444444444   7777776666542    112233444 6666666666665521    12223


Q ss_pred             cccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCC
Q 041497          175 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNAT  250 (568)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~  250 (568)
                      ..+++|+.|++++|.+.+...                   ..++..+. ..++|+.|++++|.+.+.    ....+..++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~-------------------~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGI-------------------RALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHH-------------------HHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence            344455555555554442100                   00111111 234566666666554432    122344556


Q ss_pred             CCCeEecCCCcccccccCCcc-----CCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhh
Q 041497          251 NLQKLDINRNLFSGKVSINFG-----GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLA  325 (568)
Q Consensus       251 ~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  325 (568)
                      +|+.|++++|.+.+.....+.     ..+.|+.|++.+|.++....  ..+...+..+++|+.+++++|.+.......++
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence            677777777666542222211     23567777777776653221  13334455557777777777777654322222


Q ss_pred             ----cccccceEEEcccCc
Q 041497          326 ----NLSTTMTGIAFGNNQ  340 (568)
Q Consensus       326 ----~~~~~l~~L~l~~~~  340 (568)
                          .....++.+++.++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         300 ESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHhhcCCchhhcccCCCC
Confidence                221346666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=4.1e-18  Score=138.98  Aligned_cols=162  Identities=22%  Similarity=0.393  Sum_probs=137.2

Q ss_pred             CCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497           32 RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF  111 (568)
Q Consensus        32 ~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  111 (568)
                      ...+|+.|.||+|.+..+ ++.+..+.+|++|++++|.+. .+|..++.+++|+.|+++-|++. ..|.+|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            457888899999988864 456889999999999999887 68888999999999999988887 889999999999999


Q ss_pred             eccCCccc-ccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497          112 EASNNKLA-GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF  190 (568)
Q Consensus       112 ~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (568)
                      |+++|.+. ..+|..|..++-|+.|.+++|... .+|..++++.+|+.|.+..|.+. ..|..++.+++|++|++.+|.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            99988874 467888888899999999998887 78888999999999999998887 7888888999999999988888


Q ss_pred             ccCCCCCC
Q 041497          191 SGMFPPIN  198 (568)
Q Consensus       191 ~~~~~~l~  198 (568)
                      .-..|.++
T Consensus       186 ~vlppel~  193 (264)
T KOG0617|consen  186 TVLPPELA  193 (264)
T ss_pred             eecChhhh
Confidence            76655433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=5.3e-18  Score=166.15  Aligned_cols=280  Identities=21%  Similarity=0.242  Sum_probs=157.6

Q ss_pred             eeccCCcccc-cCCcccCCCCCCcEEeCCCCcCCCC----CCcccccCCCCcEEeccCCcccc------cCchhhcCcCc
Q 041497           63 INLANNSFRA-EIPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAG------ESPAEIGNLLK  131 (568)
Q Consensus        63 L~ls~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~  131 (568)
                      |++.++.+++ .....+..+..|+.|+++++.++..    ++..+...+.+++++++++.+..      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            4555555542 2333444555667777776665421    23334445556666666655431      12233444555


Q ss_pred             CceeecccccCCCCCCcccCCCCC---CCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCC-CCccEEE
Q 041497          132 FQLLNIAENHLRGQLPASIGNLSA---LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNI-SSLEYIF  207 (568)
Q Consensus       132 L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~-~~L~~L~  207 (568)
                      |++|++++|.+.+..+..+..+..   |++|++++|.+.......+                   ...+..+ ++|+.|+
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l-------------------~~~l~~~~~~L~~L~  143 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-------------------AKGLKDLPPALEKLV  143 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH-------------------HHHHHhCCCCceEEE
Confidence            555555555554333333332222   5555555554432100000                   0022233 5566666


Q ss_pred             eecccccccCC---CcccCCCCCcceEeecCCccccc----cCccCCCCCCCCeEecCCCccccccc----CCccCCCCC
Q 041497          208 IHRNIYHGSLP---LDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQKLDINRNLFSGKVS----INFGGLQNL  276 (568)
Q Consensus       208 l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~L  276 (568)
                      +++|.+++...   ...+..++.|++|++++|.+.+.    .+..+...++|++|++++|.+.+...    ..+..+++|
T Consensus       144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            66655542111   11122567899999999887742    22334556799999999999864432    335678899


Q ss_pred             cEEECCCCCCCCcCCCCchhhhcc-cCCCcccEEEeccCcccCcCchh----hhcccccceEEEcccCcccCCC----Ch
Q 041497          277 SWLNLGKNNLGTRTANDLDFITLL-TNCTKLEVLVLDSNRFGAVLPFS----LANLSTTMTGIAFGNNQISGFI----PD  347 (568)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~~~l~~~~----~~  347 (568)
                      ++|++++|.+......  .+...+ ...+.|+.|++++|.+++.....    +... .+++.+++++|.+.+..    ..
T Consensus       224 ~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         224 EVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHHH
Confidence            9999999988753221  111111 13578999999999987433222    2223 45999999999998653    33


Q ss_pred             hhhhh-ccccccCccccc
Q 041497          348 GIANL-VNLNALGVEFNQ  364 (568)
Q Consensus       348 ~~~~~-~~L~~l~l~~~~  364 (568)
                      .+... ..++.+++..+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         301 SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhhcCCchhhcccCCCC
Confidence            44444 678888888765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=2.9e-17  Score=134.07  Aligned_cols=158  Identities=27%  Similarity=0.455  Sum_probs=90.5

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      +.++.+++.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|.+|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345555666666666665 44555666666666666666665 55555555666666666555554 4555555555555


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY  213 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (568)
                      .|++.+|++..                       ...|..|..++.|+.|.++.|.+.-..++++++++|+.|.+..|.+
T Consensus       106 vldltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  106 VLDLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hhhcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence            55555555442                       1344445555555555555555544444555555555555555554


Q ss_pred             cccCCCcccCCCCCcceEeecCCccc
Q 041497          214 HGSLPLDIGVNLPNLRFFIISGNNLT  239 (568)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (568)
                      . .+|..+. .+..|++|++++|.++
T Consensus       163 l-~lpkeig-~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  163 L-SLPKEIG-DLTRLRELHIQGNRLT  186 (264)
T ss_pred             h-hCcHHHH-HHHHHHHHhcccceee
Confidence            4 4565555 6667777777777776

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=6.5e-12  Score=132.26  Aligned_cols=136  Identities=35%  Similarity=0.633  Sum_probs=100.9

Q ss_pred             cccCCCCCCCCCCCCCCCCCc-----eeeeceeCCC----CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccc
Q 041497            2 KSQLQDPLGVTSSWNNSINLC-----QWTGVTCGHR----HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRA   72 (568)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~c-----~~~~~~c~~~----~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~   72 (568)
                      |+++.+|..  ..|..  +.|     .|.|+.|...    ...++.|+|+++.+.+..+..+..+++|++|++++|.+.+
T Consensus       381 k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g  456 (623)
T PLN03150        381 KSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG  456 (623)
T ss_pred             HHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC
Confidence            455555432  48954  455     6999999531    1358888888888888888888888888888888888887


Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCc-CcCceeeccccc
Q 041497           73 EIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNL-LKFQLLNIAENH  141 (568)
Q Consensus        73 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~~~  141 (568)
                      .+|..+..+++|++|++++|.+++.+|+.++.+++|++|++++|++.+.+|..+... .++..+++.+|.
T Consensus       457 ~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            788888888888888888888887788888888888888888888877777776543 345556666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=1.5e-12  Score=119.03  Aligned_cols=244  Identities=21%  Similarity=0.254  Sum_probs=143.9

Q ss_pred             CCeEEEEeccCCccccc----cCCcccCCCCCceeeccCC---cccccCCc-------ccCCCCCCcEEeCCCCcCCCCC
Q 041497           33 HQRVIGLDLRHQSIGGF----LSPFVGNLSFLRSINLANN---SFRAEIPH-------EVGNLFRLQNLTLTNNYFSGKI   98 (568)
Q Consensus        33 ~~~i~~L~l~~~~i~~~----~~~~~~~~~~L~~L~ls~~---~~~~~~~~-------~~~~l~~L~~L~l~~n~~~~~~   98 (568)
                      ...++.|+|++|.+...    +...+.+.++|+..+++.-   +....+|.       ++...++|++|+||.|-+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            46788899999887643    3345667788888888864   22223443       3456778888888888876555


Q ss_pred             Cccc----ccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCC----C
Q 041497           99 PTNL----SRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR----I  170 (568)
Q Consensus        99 ~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~----~  170 (568)
                      +..|    +.++.|++|.+.+|.+.-.....++  ..|..|.  .+       ...+.-+.|+++...+|.+...    +
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHH
Confidence            5443    4677888888887776421111111  0111111  00       1123345666666666665431    1


Q ss_pred             CccccccccCcEEeecccccccCCC-----CCCCCCCccEEEeecccccccCC---CcccCCCCCcceEeecCCcccccc
Q 041497          171 PSTRSHVRNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHRNIYHGSLP---LDIGVNLPNLRFFIISGNNLTGSL  242 (568)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~  242 (568)
                      ...+...+.|+.+.+..|.+....-     .+..+++|++|++..|.++....   ......++.|+++++++|.+....
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            2234455666666666666542211     45666777777777766552211   122235667777777777666543


Q ss_pred             CccC-----CCCCCCCeEecCCCcccccccC----CccCCCCCcEEECCCCCCC
Q 041497          243 QDSL-----SNATNLQKLDINRNLFSGKVSI----NFGGLQNLSWLNLGKNNLG  287 (568)
Q Consensus       243 ~~~l-----~~~~~L~~L~L~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~  287 (568)
                      ..++     ...|+|+.+.+.+|.++.....    .+...+.|..|++++|.+.
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            3222     2367888888888887643322    2355788888999988884

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.1e-12  Score=121.42  Aligned_cols=144  Identities=19%  Similarity=0.221  Sum_probs=73.5

Q ss_pred             cccccCcEEeecccccccCCC--CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCC
Q 041497          175 SHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNL  252 (568)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  252 (568)
                      .++|+|+.|+++.|.+.....  .-..+++|+.|.++.|.++..--..+...+|+|+.|++++|...........-+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            344444444444444432222  122345555666665555432222222256666666666664222222233334566


Q ss_pred             CeEecCCCccccccc-CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497          253 QKLDINRNLFSGKVS-INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA  318 (568)
Q Consensus       253 ~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (568)
                      ++|+|++|.+.+... ...+.++.|..|+++.+.+.++...+.+........++|+.|++..|++.+
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            777777776553332 224566667777777666666554433333334556666666666666644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=4.9e-12  Score=115.78  Aligned_cols=185  Identities=20%  Similarity=0.154  Sum_probs=135.2

Q ss_pred             ccCCCeeECccCccccccCc----cccCcccccccccccccccCCCC-------------CCccCCCCceEEEcccCCCC
Q 041497          370 LKSLQMLFLHENVLQGTIPS----FLGNLTMLTQRLLEVNDLLGNIP-------------PSIGNCKNLILLTTRKNKPS  432 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~  432 (568)
                      ++.|+++++++|.+....+.    .+.+++.|++|.+.+|.+.-...             .....-+.|+++...+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            67899999999987644333    35668999999999998743211             12345678999999999987


Q ss_pred             CCCCCchh---HHhhhceEEEccCCcccccC----chhhhcCCCCcEEecCCCcccccCCC----ccc-ccccceeeccc
Q 041497          433 GTMPRQLP---RIITLSVLLNLSDNLLSGHF----PAEVGKLKNLVSLDISSNMFSGEIPT----TLG-CTSLEYLCMQD  500 (568)
Q Consensus       433 ~~~~~~~~---~~~~l~~~l~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~~~~~~----~~~-~~~L~~L~Ls~  500 (568)
                      ......+.   +....++.+.+..|.|....    ..+|..+++|++|||..|-++.....    .++ +++|++|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            65433322   22233478889999886432    35678999999999999988754333    333 78999999999


Q ss_pred             ccccccCCccC-----cCCCCCCEEeCCCCcccc----CcCccccccccCCeeecccCccccc
Q 041497          501 NSFTGSIPSTL-----SSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNLSYNHFESK  554 (568)
Q Consensus       501 n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~  554 (568)
                      |.+.......|     ...|.|+.|.+.+|.++.    .+...+...+.|+.|+|++|++...
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~  313 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEK  313 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccccc
Confidence            99887655443     247899999999999975    2334556679999999999999544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=4.8e-12  Score=122.81  Aligned_cols=168  Identities=32%  Similarity=0.460  Sum_probs=85.8

Q ss_pred             eECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCc
Q 041497          376 LFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL  455 (568)
Q Consensus       376 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~  455 (568)
                      .+++.|.+. +++..++.|..|+.+.++.|.+. .+|.++.++..|++++++.|++. ..|..++.+ .+ +.+-+++|+
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pL-kvli~sNNk  154 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PL-KVLIVSNNK  154 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cc-eeEEEecCc
Confidence            344444444 44455555555555555555543 34445555555555555555544 233333322 12 445555555


Q ss_pred             ccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcc
Q 041497          456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY  534 (568)
Q Consensus       456 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  534 (568)
                      ++ .+|+.++..++|..||.+.|.+. .+|...+ +.+|+.|.++.|++. ..|..+..+ .|..||+++|++. .+|-.
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence            55 44555555555555566655555 2333333 555555555555555 333334443 2555555555555 34555


Q ss_pred             ccccccCCeeecccCcccc
Q 041497          535 LENLSFLSFLNLSYNHFES  553 (568)
Q Consensus       535 ~~~l~~L~~L~l~~n~i~~  553 (568)
                      |.+++.|++|-|.+||+.+
T Consensus       230 fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhheeeeeccCCCCC
Confidence            5555555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=2.1e-11  Score=109.11  Aligned_cols=137  Identities=24%  Similarity=0.226  Sum_probs=107.2

Q ss_pred             CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccccccc
Q 041497          414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSL  493 (568)
Q Consensus       414 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  493 (568)
                      .+..++.|+.+|+++|.|.. +.+...-.+++ +.|++|+|+|..+  +.++.+++|..||+|+|.++...-....+-++
T Consensus       279 ~~dTWq~LtelDLS~N~I~~-iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQ-IDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchhh-hhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence            44557789999999998763 22333334444 8999999999843  34889999999999999987433333338999


Q ss_pred             ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcC-ccccccccCCeeecccCcccccCC
Q 041497          494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      +.|.|++|.+...  .++.++=+|..||+++|+|..... ..++++|.|+++.+.+||+.....
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            9999999999744  578888899999999999976433 578999999999999999987654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=4.4e-12  Score=123.06  Aligned_cols=175  Identities=27%  Similarity=0.443  Sum_probs=90.0

Q ss_pred             CCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497           56 NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL  135 (568)
Q Consensus        56 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  135 (568)
                      .+.-....|++.|++. .+|..++.+..|+.+.++.|.+. .+|..+..+..|.+|+++.|+++ .+|..+..+ -|+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeE
Confidence            3334444555555554 45555555555665556555555 55555555555666666655555 344444433 24555


Q ss_pred             ecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccc
Q 041497          136 NIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG  215 (568)
Q Consensus       136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (568)
                      -+++|+++ .+|..++..++|..|+.+.|.+. ..|..++.+.+|+.|.+..|++..                       
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-----------------------  203 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-----------------------  203 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-----------------------
Confidence            55555555 44555555555555555555554 444445555555555555444443                       


Q ss_pred             cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497          216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS  263 (568)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~  263 (568)
                       +|...+ .++ |..||++.|++. .+|..|..++.|++|-|.+|.+.
T Consensus       204 -lp~El~-~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  204 -LPEELC-SLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -CCHHHh-CCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence             333332 222 445555555555 34444555555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.06  E-value=4e-10  Score=118.84  Aligned_cols=112  Identities=37%  Similarity=0.500  Sum_probs=102.9

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..++ +++|+.|+|++|++++.+|..+.++++|+.|++++|
T Consensus       421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            7889999999999999999999999999999999999998887 999999999999999999999999999999999999


Q ss_pred             ccccCcCcccccc-ccCCeeecccCcccccCCCC
Q 041497          526 NLSGHIPQYLENL-SFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       526 ~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~  558 (568)
                      .+++.+|..+... .++..+++.+|+..|.+|..
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l  534 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL  534 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCccccCCCCC
Confidence            9999999888764 46788999999988887753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=3e-11  Score=113.79  Aligned_cols=209  Identities=20%  Similarity=0.220  Sum_probs=138.2

Q ss_pred             CCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccccCCC---CCCCCCCccEEEeecccccccCCCcccCCCCC
Q 041497          152 NLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHGSLPLDIGVNLPN  227 (568)
Q Consensus       152 ~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  227 (568)
                      ++.+|+++.+.++.+..... .....++.++.||++.|-+..+.+   -...+|+|+.|+++.|.+...........++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45566666666665542111 355677888888888887777666   45678999999999998775555555557889


Q ss_pred             cceEeecCCccccccCc-cCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcc
Q 041497          228 LRFFIISGNNLTGSLQD-SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKL  306 (568)
Q Consensus       228 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  306 (568)
                      |+.|.++.|+++..... .+..+|+|+.|+|+.|...........-+..|++|+|++|++.+.+..     .....+|.|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L  273 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGL  273 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccch
Confidence            99999999998853222 335689999999999964334444455677899999999998876532     235678889


Q ss_pred             cEEEeccCcccCcCchhh-----hcccccceEEEcccCcccCCC-ChhhhhhccccccCcccccc
Q 041497          307 EVLVLDSNRFGAVLPFSL-----ANLSTTMTGIAFGNNQISGFI-PDGIANLVNLNALGVEFNQL  365 (568)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~~~~  365 (568)
                      +.|.++.+.+..+-....     .....+++.|++..|++.+.. -..+..+++|+.+.+..|.+
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            999998888766422221     233445777777777764321 12333344444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=5.3e-11  Score=106.61  Aligned_cols=225  Identities=17%  Similarity=0.170  Sum_probs=137.9

Q ss_pred             ccCCCCcEEeccCCcc--------cccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccc
Q 041497          103 SRCSNLVKFEASNNKL--------AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR  174 (568)
Q Consensus       103 ~~l~~L~~L~l~~n~~--------~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  174 (568)
                      ..+..|.+|.++..+.        ...+|..+....+|+.+.++++.-.. +......-|.|+++.+....+.. . ..+
T Consensus       179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~-~~l  255 (490)
T KOG1259|consen  179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-V-PSL  255 (490)
T ss_pred             HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-c-ccc
Confidence            3467788887776432        12334445556778888888776542 22223334778888877655431 1 111


Q ss_pred             cccccCcEEeeccccc---ccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCC
Q 041497          175 SHVRNLISFNVGLNQF---SGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNAT  250 (568)
Q Consensus       175 ~~l~~L~~L~l~~~~~---~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  250 (568)
                      --...  ..|.....-   .+... ....++.|+.+++++|.++ .+.+.+- -.|.++.|++++|++..+  ..+..++
T Consensus       256 ~pe~~--~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~  329 (490)
T KOG1259|consen  256 LPETI--LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELP  329 (490)
T ss_pred             cchhh--hcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcc
Confidence            11111  111111111   11111 3445677888888888876 5555543 578889999999988755  3477888


Q ss_pred             CCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc
Q 041497          251 NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT  330 (568)
Q Consensus       251 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  330 (568)
                      +|+.|+|++|.++.. ..+-..+-++++|.+..|.+.+...        ++.+.+|..||+.+|++..+....-.+..++
T Consensus       330 ~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~LSG--------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETLSG--------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             cceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhhhh--------hHhhhhheeccccccchhhHHHhcccccccH
Confidence            899999999987633 3334456688888888888876543        6778888899998888876544333333344


Q ss_pred             ceEEEcccCcccCCC
Q 041497          331 MTGIAFGNNQISGFI  345 (568)
Q Consensus       331 l~~L~l~~~~l~~~~  345 (568)
                      ++.+.+.+|.+.+..
T Consensus       401 LE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  401 LETLRLTGNPLAGSV  415 (490)
T ss_pred             HHHHhhcCCCccccc
Confidence            777777777766543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=2.5e-10  Score=122.86  Aligned_cols=205  Identities=23%  Similarity=0.271  Sum_probs=121.7

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCc--CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY--FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLK  131 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  131 (568)
                      ..+....|...+.+|.+. .++.+. ..++|++|-+..|.  +.....+.|..++.|++||+++|.-.+.+|..++.+.+
T Consensus       519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344456677777777654 333333 34467777777774  44333444677888888888877766678888888888


Q ss_pred             CceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC---CCCCCCCccEEEe
Q 041497          132 FQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP---PINNISSLEYIFI  208 (568)
Q Consensus       132 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l  208 (568)
                      ||+|+++++.+. .+|.++++++.|.+|++..+......+.....+++|+.|.+..........   .+..+.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            888888888877 678888888888888888776554556666678888888877665332222   3344445555444


Q ss_pred             ecccccccCCCcccCCCCCcc----eEeecCCccccccCccCCCCCCCCeEecCCCccccc
Q 041497          209 HRNIYHGSLPLDIGVNLPNLR----FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK  265 (568)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~  265 (568)
                      .....  .+..... ....|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+.
T Consensus       676 ~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  676 TISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             ecchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence            32221  0001110 112221    2222222221 2334556677777777777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.6e-10  Score=98.10  Aligned_cols=128  Identities=27%  Similarity=0.269  Sum_probs=45.2

Q ss_pred             CccCCCCceEEEcccCCCCCCCCCchh-HHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcc-c-c
Q 041497          414 SIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-G-C  490 (568)
Q Consensus       414 ~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~-~  490 (568)
                      .+.++..+++|++.+|.|...  +.+. .+.++ +.|++++|.|+..  +.+..++.|++|++++|+++ .+...+ . +
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L-~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l   87 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKL-EVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT---EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccccccccc--cchhhhhcCC-CEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence            345566788888888887643  2333 23444 7788888888743  35777888888888888887 343333 2 7


Q ss_pred             cccceeecccccccccC-CccCcCCCCCCEEeCCCCccccCcC---ccccccccCCeeecc
Q 041497          491 TSLEYLCMQDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLS  547 (568)
Q Consensus       491 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  547 (568)
                      ++|++|++++|+|.... ...++.+++|+.|++.+|++....-   ..+..+|+|+.||-.
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            88888888888876422 2456678888888888888864321   245677888887643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=4.8e-10  Score=113.04  Aligned_cols=194  Identities=30%  Similarity=0.479  Sum_probs=104.5

Q ss_pred             eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCC-CCcEEeccCCcccccCchhhcCcCcCceeecccc
Q 041497           62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCS-NLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN  140 (568)
Q Consensus        62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  140 (568)
                      .++...+.+.. .+..+..++.++.|++.++.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            35555555431 2233445566777777777766 4444455553 6777777777665 34455666677777777777


Q ss_pred             cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCc
Q 041497          141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD  220 (568)
Q Consensus       141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  220 (568)
                      ++. .++...+..+.|+.|++++|.+. .+|........|+.+.+++|........+..++.+..+.             
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~-------------  238 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE-------------  238 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc-------------
Confidence            666 34444445666677777776665 455444445556666666664333333344444444444             


Q ss_pred             ccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCC
Q 041497          221 IGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGT  288 (568)
Q Consensus       221 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (568)
                                  +.++++.. .+..+..+++++.|++++|.++.+..  ++...+++.|+++++.+..
T Consensus       239 ------------l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         239 ------------LSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ------------cCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence                        44444331 12334444455555555555543333  4455555555555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=2.8e-10  Score=97.87  Aligned_cols=109  Identities=26%  Similarity=0.386  Sum_probs=32.8

Q ss_pred             ccCCCCCceeeccCCcccccCCcccC-CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhh-cCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVG-NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEI-GNLLK  131 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~  131 (568)
                      +.+..++++|++++|.++..  +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++.. ...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            44555678888888877632  2343 4677788888888776 332 466777788888888777743 3333 35677


Q ss_pred             CceeecccccCCCC-CCcccCCCCCCCeEEeccCCCC
Q 041497          132 FQLLNIAENHLRGQ-LPASIGNLSALQEINVNGNRLG  167 (568)
Q Consensus       132 L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~  167 (568)
                      |++|++++|.+... ....+..+++|++|++.+|++.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            77777777776531 1133455666666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=1.1e-09  Score=110.44  Aligned_cols=195  Identities=30%  Similarity=0.440  Sum_probs=142.7

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      .+++..+.+.... ..+..++.++.|++.++.+. .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3555555553221 23456688999999999988 5666676774 9999999999998 66677899999999999999


Q ss_pred             cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCC
Q 041497          117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP  196 (568)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (568)
                      ++. .++......++|+.|++++|.+. .+|........|+++.+++|... ..+..+..+..+..+.+..+++......
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccch
Confidence            998 55666668899999999999998 56665566677999999999644 5677788888888888888877654445


Q ss_pred             CCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc
Q 041497          197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS  241 (568)
Q Consensus       197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  241 (568)
                      +..++.++.|++++|.+. .++.  .....+++.++++++.+...
T Consensus       251 ~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         251 IGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hccccccceecccccccc-cccc--ccccCccCEEeccCcccccc
Confidence            566666666666666655 2332  22556666666666655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=3.5e-10  Score=121.80  Aligned_cols=106  Identities=22%  Similarity=0.375  Sum_probs=62.4

Q ss_pred             CeEEEEeccCCc--cccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497           34 QRVIGLDLRHQS--IGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF  111 (568)
Q Consensus        34 ~~i~~L~l~~~~--i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  111 (568)
                      +.+++|=+.++.  +......+|..++.|++||+++|.-...+|+.++++-+|++|+++++.+. .+|..++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            345555555553  44444445666666666666665544456666666666666666666666 666666666666666


Q ss_pred             eccCCcccccCchhhcCcCcCceeecccc
Q 041497          112 EASNNKLAGESPAEIGNLLKFQLLNIAEN  140 (568)
Q Consensus       112 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  140 (568)
                      ++..+.....++.....+++||+|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            66665544344444445666666666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=5.8e-10  Score=78.73  Aligned_cols=61  Identities=38%  Similarity=0.557  Sum_probs=47.6

Q ss_pred             cccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcc
Q 041497          491 TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  551 (568)
Q Consensus       491 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  551 (568)
                      ++|++|++++|+++.+.+..|..+++|++|++++|.++...++.|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788888888766667777888888888888888777777788888888888888765

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.7e-09  Score=74.06  Aligned_cols=60  Identities=38%  Similarity=0.526  Sum_probs=50.7

Q ss_pred             CCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcc
Q 041497          468 KNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNL  527 (568)
Q Consensus       468 ~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  527 (568)
                      |+|++|++++|+++...+..|. +++|+.|++++|.++...+..|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5788899999988855556776 89999999999999888888899999999999999875

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.72  E-value=4e-10  Score=112.65  Aligned_cols=130  Identities=30%  Similarity=0.288  Sum_probs=101.0

Q ss_pred             CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceee
Q 041497          419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLC  497 (568)
Q Consensus       419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~  497 (568)
                      ..|...++++|.+. .+...+.-++.+ ++|||++|++....  .+..+++|++|||+.|+++ .+|.... -..|..|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence            35666777777664 222334444444 89999999998543  7899999999999999998 6776554 34499999


Q ss_pred             cccccccccCCccCcCCCCCCEEeCCCCccccCcC-ccccccccCCeeecccCcccccC
Q 041497          498 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       498 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~  555 (568)
                      +++|.++..  .++.++++|+.||+++|-+.+... +-+..+..|+.|+|.|||+.|-.
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999999854  478999999999999999876433 34567788999999999999864

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=7.6e-09  Score=92.96  Aligned_cols=236  Identities=16%  Similarity=0.143  Sum_probs=126.4

Q ss_pred             CcccCCCCCCcEEeCCCCcCCCCCC-ccc-ccCCCCcEEeccCCcccc--cCchhhcCcCcCceeecccccCCCCCCccc
Q 041497           75 PHEVGNLFRLQNLTLTNNYFSGKIP-TNL-SRCSNLVKFEASNNKLAG--ESPAEIGNLLKFQLLNIAENHLRGQLPASI  150 (568)
Q Consensus        75 ~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  150 (568)
                      +-.++...-++.|-+.++.+..... ..| ..++.++.+|+.+|+++.  .+...+.+++.|++|+++.|++...+...=
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            3334444455566666666542111 112 357889999999999874  344556789999999999998874332211


Q ss_pred             CCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeeccccccc---CCCCCCCC-CCccEEEeeccccccc-CCCcccCC
Q 041497          151 GNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSG---MFPPINNI-SSLEYIFIHRNIYHGS-LPLDIGVN  224 (568)
Q Consensus       151 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~---~~~~l~~~-~~L~~L~l~~~~~~~~-~~~~~~~~  224 (568)
                      ....+|+.|.+.++.+..... ..+..+|.+++|+++.|....   ........ +.++.++...|...-. --.....-
T Consensus       118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~  197 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI  197 (418)
T ss_pred             ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence            356789999999888765333 345677888888888774331   11111111 2334444333322100 00111123


Q ss_pred             CCCcceEeecCCcccccc-CccCCCCCCCCeEecCCCccccc-ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccC
Q 041497          225 LPNLRFFIISGNNLTGSL-QDSLSNATNLQKLDINRNLFSGK-VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTN  302 (568)
Q Consensus       225 ~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  302 (568)
                      +|++..+.+..|++.... ...+..+|.+--|+|+.+++.+. ...++..++.|..|.+.++++.+.........-.+..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            456666666666544321 12333445555666666665432 2233455666666666666655433332222223344


Q ss_pred             CCcccEEE
Q 041497          303 CTKLEVLV  310 (568)
Q Consensus       303 ~~~L~~L~  310 (568)
                      +++++.|+
T Consensus       278 L~~v~vLN  285 (418)
T KOG2982|consen  278 LTKVQVLN  285 (418)
T ss_pred             ccceEEec
Confidence            44455443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.4e-09  Score=106.99  Aligned_cols=173  Identities=26%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             CCeeECccCccccccCccccCcccccccccccccccCCCC-CCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEc
Q 041497          373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL  451 (568)
Q Consensus       373 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~L  451 (568)
                      |+.|++.+|.+...  ..+..++.|+.+++++|.++.... . ...+.+++.+++.+|.+.....  +.....+ ..+++
T Consensus       142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l-~~~~l  215 (414)
T KOG0531|consen  142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKL-VLLSL  215 (414)
T ss_pred             hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHH-HHhhc
Confidence            44445555544422  233335555555555555543322 1 3445555555555555432221  1111112 22345


Q ss_pred             cCCcccccCchhhhcCC--CCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497          452 SDNLLSGHFPAEVGKLK--NLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS  528 (568)
Q Consensus       452 s~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (568)
                      ..|.++...  .+..+.  .|+.+++++|++. ..+..+. +..+..|++++|.+...  ..+...+.+..+....|.+.
T Consensus       216 ~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  216 LDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            555554211  112222  2666677776665 3322222 56666667766666533  23444555666666666554


Q ss_pred             cC---cCc-cccccccCCeeecccCcccccCC
Q 041497          529 GH---IPQ-YLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       529 ~~---~~~-~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      ..   ... .....+.++.+.+.+|++....+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  291 LSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             chhhhhccccccccccccccccccCccccccc
Confidence            21   111 13455666666677766666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=5.6e-09  Score=105.40  Aligned_cols=130  Identities=25%  Similarity=0.305  Sum_probs=72.1

Q ss_pred             cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497           55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL  134 (568)
Q Consensus        55 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  134 (568)
                      ..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|.++..  ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            345555566666665542 2333556666777777776665 3333355666666666666666532  23445555666


Q ss_pred             eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccc
Q 041497          135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFS  191 (568)
Q Consensus       135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  191 (568)
                      |++++|.+...  ..+..++.|+.+++++|.+....+ . +..+.+++.+.+.+|.+.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            66666666532  334446666666666666553222 1 345555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=7.6e-10  Score=99.28  Aligned_cols=224  Identities=17%  Similarity=0.193  Sum_probs=146.0

Q ss_pred             CCcEEeCCCCcCCCCCCcccccC--CCCcEEeccCCccccc-CchhhcCc-CcCceeecccccCCC-CCCcccCCCCCCC
Q 041497           83 RLQNLTLTNNYFSGKIPTNLSRC--SNLVKFEASNNKLAGE-SPAEIGNL-LKFQLLNIAENHLRG-QLPASIGNLSALQ  157 (568)
Q Consensus        83 ~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~-~~~~~~~l-~~L~~L~l~~~~l~~-~~~~~~~~l~~L~  157 (568)
                      ..+++|+.+-.+.   |..+..+  .....+.+.+.-.... +.+.+.-. ..|++|||+...++. .+...+..|.+|+
T Consensus       137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk  213 (419)
T KOG2120|consen  137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK  213 (419)
T ss_pred             ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence            4567777776654   4444443  3455566654333211 11222212 459999999887763 2334467889999


Q ss_pred             eEEeccCCCCCCCCccccccccCcEEeecccccccCCC---CCCCCCCccEEEeecccccc-cCCCcccCCCCCcceEee
Q 041497          158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHG-SLPLDIGVNLPNLRFFII  233 (568)
Q Consensus       158 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l  233 (568)
                      .|.+.++++.+.+...+++-..|+.++++.+.--....   -+.+++.|.+|++++|.... .+...+..--++|+.|++
T Consensus       214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl  293 (419)
T KOG2120|consen  214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL  293 (419)
T ss_pred             hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence            99999999988888888999999999999885433332   57789999999999997653 233333444578899999


Q ss_pred             cCCccc---cccCccCCCCCCCCeEecCCCc-ccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497          234 SGNNLT---GSLQDSLSNATNLQKLDINRNL-FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL  309 (568)
Q Consensus       234 ~~~~~~---~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  309 (568)
                      +++.-.   .....-...||+|.+|||++|. ++......|..++.|++|.++.|-.....     ..--+...|+|.+|
T Consensus       294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~-----~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE-----TLLELNSKPSLVYL  368 (419)
T ss_pred             hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH-----HeeeeccCcceEEE
Confidence            887421   1111223568999999999885 44333344667788888888887543211     11125667788888


Q ss_pred             EeccC
Q 041497          310 VLDSN  314 (568)
Q Consensus       310 ~l~~~  314 (568)
                      ++.++
T Consensus       369 dv~g~  373 (419)
T KOG2120|consen  369 DVFGC  373 (419)
T ss_pred             Eeccc
Confidence            87765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=5.5e-09  Score=93.84  Aligned_cols=177  Identities=17%  Similarity=0.135  Sum_probs=98.0

Q ss_pred             CCcEEeCCCCcCCCC-CCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCC--CCcccCCCCCCCeE
Q 041497           83 RLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQ--LPASIGNLSALQEI  159 (568)
Q Consensus        83 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L  159 (568)
                      .||++|+++..++.. +-..+..|.+|+.|.+.++++...+...+..-.+|+.|+++.++=...  ..-.+.+|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            366666666655421 112245566666666666666655555666666666666666532111  11123456666667


Q ss_pred             EeccCCCCCCCCccc-c-ccccCcEEeeccccccc---CCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEee
Q 041497          160 NVNGNRLGGRIPSTR-S-HVRNLISFNVGLNQFSG---MFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII  233 (568)
Q Consensus       160 ~l~~~~~~~~~~~~l-~-~l~~L~~L~l~~~~~~~---~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  233 (568)
                      ++++|.+......++ . --++|..|+++|+.-.-   +.. -...+|+|.+|+++++.....--...+.+++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            776666543222211 1 13456666776664321   111 33457778888887665321222222337788888888


Q ss_pred             cCCccccccCc---cCCCCCCCCeEecCCCc
Q 041497          234 SGNNLTGSLQD---SLSNATNLQKLDINRNL  261 (568)
Q Consensus       234 ~~~~~~~~~~~---~l~~~~~L~~L~L~~n~  261 (568)
                      +.|..  ++|.   .+...|.|.+|+..++-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            87742  2333   34567888888887773

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=3.8e-08  Score=88.58  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=70.6

Q ss_pred             cCcEEeecccccccCCC---CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc-cCccCCCCCCCCe
Q 041497          179 NLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS-LQDSLSNATNLQK  254 (568)
Q Consensus       179 ~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~  254 (568)
                      .++.+++..|....+..   ...-+|++..+.+..|+++....+.-+..+|.+..|+++.+++.+. ..+.+.+++.|..
T Consensus       174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d  253 (418)
T KOG2982|consen  174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD  253 (418)
T ss_pred             hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence            45555555554443322   2234678888888888777655555555778888899998887753 2456788999999


Q ss_pred             EecCCCcccccccCC------ccCCCCCcEEECC
Q 041497          255 LDINRNLFSGKVSIN------FGGLQNLSWLNLG  282 (568)
Q Consensus       255 L~L~~n~~~~~~~~~------~~~~~~L~~L~l~  282 (568)
                      |.++++.+.+.....      ++.+++++.|+=+
T Consensus       254 lRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  254 LRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             eeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            999999886543322      4677888887654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.32  E-value=7.6e-08  Score=85.52  Aligned_cols=180  Identities=19%  Similarity=0.246  Sum_probs=97.7

Q ss_pred             CeEEEEeccCCccccccCC----cccCCCCCceeeccCCcc---ccc-------CCcccCCCCCCcEEeCCCCcCCCCCC
Q 041497           34 QRVIGLDLRHQSIGGFLSP----FVGNLSFLRSINLANNSF---RAE-------IPHEVGNLFRLQNLTLTNNYFSGKIP   99 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~----~~~~~~~L~~L~ls~~~~---~~~-------~~~~~~~l~~L~~L~l~~n~~~~~~~   99 (568)
                      ..++.+|||||.|......    .+.+-.+|++.+++.-..   .+.       +..++.+||+|+..++|.|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5678889999988754333    355667888888776321   112       22345688888888888888876666


Q ss_pred             ccc----ccCCCCcEEeccCCccccc----Cchh---------hcCcCcCceeecccccCCCC----CCcccCCCCCCCe
Q 041497          100 TNL----SRCSNLVKFEASNNKLAGE----SPAE---------IGNLLKFQLLNIAENHLRGQ----LPASIGNLSALQE  158 (568)
Q Consensus       100 ~~~----~~l~~L~~L~l~~n~~~~~----~~~~---------~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~  158 (568)
                      ..+    +.-+.|++|.+++|.+.-.    +..+         ...-+.|+......|.+..-    ....+.....|++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            543    4567888888888876421    1111         12234555555555554311    0111222345566


Q ss_pred             EEeccCCCCCCCCc-----cccccccCcEEeecccccccCCC-----CCCCCCCccEEEeecccc
Q 041497          159 INVNGNRLGGRIPS-----TRSHVRNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHRNIY  213 (568)
Q Consensus       159 L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~  213 (568)
                      +.+..|.+.-....     .+..+.+|+.||+..|.++...+     .++.++.|+.|.+..|.+
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            66665554321111     12334555555555555543222     334444455555544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=2.3e-07  Score=82.59  Aligned_cols=186  Identities=16%  Similarity=0.093  Sum_probs=129.5

Q ss_pred             ccCCCeeECccCccccccC----ccccCcccccccccccccccCCCC-------------CCccCCCCceEEEcccCCCC
Q 041497          370 LKSLQMLFLHENVLQGTIP----SFLGNLTMLTQRLLEVNDLLGNIP-------------PSIGNCKNLILLTTRKNKPS  432 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~  432 (568)
                      ||.|+.+++++|.+....+    +.+..-+.|++|.+++|.+.-...             .-..+-|.|+++....|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            8999999999998875544    346778899999999997742211             12345689999999999986


Q ss_pred             CCCCCchh---HHhhhceEEEccCCcccccC-----chhhhcCCCCcEEecCCCcccccCCCc----cc-ccccceeecc
Q 041497          433 GTMPRQLP---RIITLSVLLNLSDNLLSGHF-----PAEVGKLKNLVSLDISSNMFSGEIPTT----LG-CTSLEYLCMQ  499 (568)
Q Consensus       433 ~~~~~~~~---~~~~l~~~l~Ls~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~~~~~----~~-~~~L~~L~Ls  499 (568)
                      ......+.   .....+..+.+..|.|....     ...+..+.+|+.||+..|-++..-...    .. .+.|++|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            54433222   22234477888899887432     224567899999999999887433332    23 6779999999


Q ss_pred             cccccccCCccC----c--CCCCCCEEeCCCCccccC-cCc----cc--cccccCCeeecccCcccccC
Q 041497          500 DNSFTGSIPSTL----S--SLKSITELDLSRNNLSGH-IPQ----YL--ENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       500 ~n~l~~~~~~~~----~--~l~~L~~L~l~~n~l~~~-~~~----~~--~~l~~L~~L~l~~n~i~~~~  555 (568)
                      +|-++......+    .  ..|+|+.|-..+|.+.+- +..    .|  ..+|-|..+.+.||+|+...
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence            998876554332    2  368899999999987542 221    11  35677888889999987653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=2.2e-07  Score=93.58  Aligned_cols=105  Identities=26%  Similarity=0.260  Sum_probs=85.2

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCc
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN  526 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  526 (568)
                      ...+.++|.+. .+.+++.-++.|+.|+|++|+++ .+....-|+.|+.|||++|.+....--.-..+ .|+.|.+++|-
T Consensus       167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~  243 (1096)
T KOG1859|consen  167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA  243 (1096)
T ss_pred             hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence            56689999998 77789999999999999999998 45444449999999999999984433333444 49999999999


Q ss_pred             cccCcCccccccccCCeeecccCcccccCC
Q 041497          527 LSGHIPQYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       527 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      ++..  ..++++++|+.||+++|-|.+-.+
T Consensus       244 l~tL--~gie~LksL~~LDlsyNll~~hse  271 (1096)
T KOG1859|consen  244 LTTL--RGIENLKSLYGLDLSYNLLSEHSE  271 (1096)
T ss_pred             HHhh--hhHHhhhhhhccchhHhhhhcchh
Confidence            8842  568999999999999997766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.19  E-value=3.8e-08  Score=92.75  Aligned_cols=251  Identities=16%  Similarity=0.078  Sum_probs=130.8

Q ss_pred             ccccCcEEeecccccccCCC---CCCCCCCccEEEeeccc-ccccCCCcccCCCCCcceEeecCCc-cccccCc-cCCCC
Q 041497          176 HVRNLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNI-YHGSLPLDIGVNLPNLRFFIISGNN-LTGSLQD-SLSNA  249 (568)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~  249 (568)
                      .++++++|.+.++...+...   .-..++.++.+++..|. ++.........++++|+++++++|. +++.... ...++
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            34455555554444222211   11234555555555532 2322333344467777777777763 3332111 23455


Q ss_pred             CCCCeEecCCCccccccc--CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCc-ccCcCchhhhc
Q 041497          250 TNLQKLDINRNLFSGKVS--INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR-FGAVLPFSLAN  326 (568)
Q Consensus       250 ~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~  326 (568)
                      ..++.+.+.+|.-.+...  ..-+.+..+.++++..|...+..    +....-..+..|+.++.+++. +++.+.+.+..
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~----~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~  317 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE----DLWLIACGCHALQVLCYSSCTDITDEVLWALGQ  317 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch----HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence            566666666654221111  11134555666666666332211    222234467778888887764 33444455555


Q ss_pred             ccccceEEEcccCc-ccCCCChhh-hhhccccccCccccccchhh--------ccCCCeeECccCcccccc-----Cccc
Q 041497          327 LSTTMTGIAFGNNQ-ISGFIPDGI-ANLVNLNALGVEFNQLAVTI--------LKSLQMLFLHENVLQGTI-----PSFL  391 (568)
Q Consensus       327 ~~~~l~~L~l~~~~-l~~~~~~~~-~~~~~L~~l~l~~~~~~~~~--------~~~L~~L~l~~~~~~~~~-----~~~~  391 (568)
                      -..+++.+.+..|+ +++.-...+ ..++.|+.+++..+......        |+.||.+.++.|....+.     ...-
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            55668888888775 333322222 23566777777766553322        777777777776543221     2223


Q ss_pred             cCccccccccccccccc-CCCCCCccCCCCceEEEcccCC
Q 041497          392 GNLTMLTQRLLEVNDLL-GNIPPSIGNCKNLILLTTRKNK  430 (568)
Q Consensus       392 ~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~  430 (568)
                      ..+..|+.+.++++..+ ......+..|++|+.+++-+++
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            44566777777776643 2334455667777776666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=2e-07  Score=74.12  Aligned_cols=108  Identities=21%  Similarity=0.308  Sum_probs=55.1

Q ss_pred             EEEccCCcccccCchhhh-cCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          448 LLNLSDNLLSGHFPAEVG-KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       448 ~l~Ls~n~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      ..+|++|.+. ..|..|. ..+..+.|++++|.++ .+|..+. ++.|+.|+++.|.+. ..|..+..+.+|-.||..+|
T Consensus        57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             EEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence            3456666655 3333333 3445566666666665 5555555 666666666666655 33444444555555565555


Q ss_pred             ccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      .+..+.-+ +---+..-..++.++++.+.++...
T Consensus       134 a~~eid~d-l~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  134 ARAEIDVD-LFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             ccccCcHH-HhccccHHHHHhcCCcccccCcccc
Confidence            55432222 1111222233456666666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.03  E-value=1.5e-07  Score=88.81  Aligned_cols=273  Identities=17%  Similarity=0.074  Sum_probs=134.1

Q ss_pred             CCCCeEecCCCcccccccC--CccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccC-cccCcCchhhhc
Q 041497          250 TNLQKLDINRNLFSGKVSI--NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN-RFGAVLPFSLAN  326 (568)
Q Consensus       250 ~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~  326 (568)
                      ..|+.|.+.++.-.+..+.  ....+++++.|++.+|...+.    ..+...-..|+.++.+++..| .++...-..++.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd----~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD----SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH----HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            3588888888864332221  235678888888888763221    123334567888888888875 344433333333


Q ss_pred             ccccceEEEcccCc-ccCCC-ChhhhhhccccccCccccccc--------hhhccCCCeeECccCc-cccccC-ccccCc
Q 041497          327 LSTTMTGIAFGNNQ-ISGFI-PDGIANLVNLNALGVEFNQLA--------VTILKSLQMLFLHENV-LQGTIP-SFLGNL  394 (568)
Q Consensus       327 ~~~~l~~L~l~~~~-l~~~~-~~~~~~~~~L~~l~l~~~~~~--------~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~  394 (568)
                      .-+++++++++.|. +.+.. ......++.++.+..++|.-.        ...++.+.++++..|. +++... ..-..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            34457888888774 44321 223344555555555544321        1114555566655553 222211 112446


Q ss_pred             ccccccccccccc-cCCCCCCc-cCCCCceEEEcccCCCCCC-CCCchhHHhhhceEEEccCCccccc--CchhhhcCCC
Q 041497          395 TMLTQRLLEVNDL-LGNIPPSI-GNCKNLILLTTRKNKPSGT-MPRQLPRIITLSVLLNLSDNLLSGH--FPAEVGKLKN  469 (568)
Q Consensus       395 ~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~l~Ls~n~l~~~--~~~~l~~l~~  469 (568)
                      ..|+.++.+++.. ++....++ .++.+|+.+.+..|+-.+. -...+.....-++.+++.++.....  +...-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            7777777766543 22222233 4577788887777753211 1111111111114445555432211  1111224566


Q ss_pred             CcEEecCCCcc-cccCCCcc-----cccccceeeccccccc-ccCCccCcCCCCCCEEeCCCCc
Q 041497          470 LVSLDISSNMF-SGEIPTTL-----GCTSLEYLCMQDNSFT-GSIPSTLSSLKSITELDLSRNN  526 (568)
Q Consensus       470 L~~L~ls~n~l-~~~~~~~~-----~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~  526 (568)
                      |++|.++.|.. +++....+     +...|+.+.|++++.+ +...+-+..+++|+.+++..+.
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            66666665532 22200111     1455556666665532 2223344455556666655554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=8e-07  Score=70.79  Aligned_cols=106  Identities=25%  Similarity=0.336  Sum_probs=63.4

Q ss_pred             CeEEEEeccCCccccccCC---cccCCCCCceeeccCCcccccCCccc-CCCCCCcEEeCCCCcCCCCCCcccccCCCCc
Q 041497           34 QRVIGLDLRHQSIGGFLSP---FVGNLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGKIPTNLSRCSNLV  109 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~---~~~~~~~L~~L~ls~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  109 (568)
                      .....+||+.+++-- +++   .+....+|+.+++++|.+.. +|..| ..++.+++|++++|.++ ..|..+..++.|+
T Consensus        27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            444556666664431 111   23344556666777776663 34333 34456777777777776 5566677777777


Q ss_pred             EEeccCCcccccCchhhcCcCcCceeecccccCC
Q 041497          110 KFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR  143 (568)
Q Consensus       110 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~  143 (568)
                      .|++..|++. ..|..+..+.++.+|+..+|.+.
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            7777777765 45666666777777776666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=7.8e-06  Score=52.56  Aligned_cols=36  Identities=39%  Similarity=0.603  Sum_probs=18.2

Q ss_pred             ccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497          492 SLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS  528 (568)
Q Consensus       492 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (568)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33333555555555555555555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2.9e-05  Score=66.52  Aligned_cols=59  Identities=27%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             CCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccc
Q 041497           59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA  119 (568)
Q Consensus        59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  119 (568)
                      +...+|+++|.+..  ...|..++.|.+|.+++|+++.+.|.--..+++|..|.+.+|.+.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            44455555555431  112344555555555555555444433334455555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=2.4e-05  Score=50.32  Aligned_cols=40  Identities=45%  Similarity=0.587  Sum_probs=33.1

Q ss_pred             CCCCEEeCCCCccccCcCccccccccCCeeecccCcccccC
Q 041497          515 KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~  555 (568)
                      ++|++|++++|.++. +|..++++++|+.|++++|+|+.-.
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence            579999999999996 4556899999999999999998543

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=5.6e-05  Score=64.82  Aligned_cols=103  Identities=21%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccC-CccCcCCCCCCEEeCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSI-PSTLSSLKSITELDLSR  524 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~  524 (568)
                      ..+||++|.+.-  ...|..++.|..|.+.+|+++..-|.... +++|..|.|.+|++.... .+.+..+|+|+.|.+-+
T Consensus        45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            678999998862  24678889999999999999966666665 888999999999886432 35677889999999999


Q ss_pred             CccccCcC---ccccccccCCeeecccCcc
Q 041497          525 NNLSGHIP---QYLENLSFLSFLNLSYNHF  551 (568)
Q Consensus       525 n~l~~~~~---~~~~~l~~L~~L~l~~n~i  551 (568)
                      |+++..--   ..+..+|+|+.||.++=.-
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhhhH
Confidence            99875322   3457889999999876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.54  E-value=2.1e-05  Score=83.28  Aligned_cols=108  Identities=12%  Similarity=0.204  Sum_probs=61.2

Q ss_pred             CCCcEEeCCCCcCCCC-CCccc-ccCCCCcEEeccCCccccc-CchhhcCcCcCceeecccccCCCCCCcccCCCCCCCe
Q 041497           82 FRLQNLTLTNNYFSGK-IPTNL-SRCSNLVKFEASNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE  158 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~-~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  158 (568)
                      .+|++|++++...... -|..+ .-+|+|+.|.+.+-.+... ......++++|..||+++++++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4677777776533211 11222 2467777777776554321 122334567777777777777633  56677777777


Q ss_pred             EEeccCCCCC-CCCccccccccCcEEeecccccc
Q 041497          159 INVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFS  191 (568)
Q Consensus       159 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  191 (568)
                      |.+.+-.+.. ..-..+..+++|+.||++.....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            7777655543 22234556666666766655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.51  E-value=0.00035  Score=68.24  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=15.2

Q ss_pred             cccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          491 TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       491 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      ++|+.|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45555555555543 2333222  34555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.50  E-value=0.00026  Score=58.69  Aligned_cols=107  Identities=22%  Similarity=0.279  Sum_probs=50.2

Q ss_pred             CcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCc
Q 041497           52 PFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLK  131 (568)
Q Consensus        52 ~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  131 (568)
                      .+|.++++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|..++.|+.+.+.. .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3566666677777664 344444555666666777777664 4434455566666677777754 333233445556666


Q ss_pred             CceeecccccCCCCCCcccCCCCCCCeEEecc
Q 041497          132 FQLLNIAENHLRGQLPASIGNLSALQEINVNG  163 (568)
Q Consensus       132 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  163 (568)
                      |+.+.+..+ +.......+.++ .|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            766666543 332333445555 666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=2.8e-05  Score=82.30  Aligned_cols=117  Identities=21%  Similarity=0.249  Sum_probs=59.2

Q ss_pred             CCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccccc-ccCCccCCCCCcE
Q 041497          200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK-VSINFGGLQNLSW  278 (568)
Q Consensus       200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~  278 (568)
                      +|+|+.|.+.+-.+...--...+..+|+|..||++++.++..  ..++.+++|+.|.+.+-++... .-..+..+++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555444332211123334666666666666666543  3455566666666666665431 1122455667777


Q ss_pred             EECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497          279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA  318 (568)
Q Consensus       279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (568)
                      ||++.............+...-..+|.|+.||.++..+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7776654433221111122223346667777777665544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.40  E-value=4.8e-05  Score=48.78  Aligned_cols=30  Identities=57%  Similarity=1.132  Sum_probs=22.6

Q ss_pred             CcccCC-CCCCCCCCCCCC--CCCceeeeceeC
Q 041497            1 MKSQLQ-DPLGVTSSWNNS--INLCQWTGVTCG   30 (568)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~~--~~~c~~~~~~c~   30 (568)
                      ||+++. ||..++.+|+.+  .++|.|.||.|.
T Consensus        11 ~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   11 FKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            688899 688999999887  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.36  E-value=0.00046  Score=57.19  Aligned_cols=122  Identities=17%  Similarity=0.194  Sum_probs=49.9

Q ss_pred             cccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCC
Q 041497          390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN  469 (568)
Q Consensus       390 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~  469 (568)
                      .|.++.+|+.+.+.. .+......+|.++++|+.+.+..                         + +......+|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-------------------------~-~~~i~~~~F~~~~~   59 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-------------------------N-LTSIGDNAFSNCKS   59 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-------------------------T-TSCE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-------------------------c-ccccceeeeecccc
Confidence            455555555555543 33334444555555555554433                         2 22233345666666


Q ss_pred             CcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCC
Q 041497          470 LVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS  542 (568)
Q Consensus       470 L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  542 (568)
                      ++.+.+.+ .+.......|. +++|+.+++..+ ++......|.++ .|+.+.+.. .+.......|.++++|+
T Consensus        60 l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   60 LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            77777765 33223344454 677777777654 444555566665 777777765 44445555666666553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.12  E-value=0.0026  Score=62.25  Aligned_cols=56  Identities=14%  Similarity=0.215  Sum_probs=33.8

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      +..+.++++|++++|.+. .+|    .+| +|++|.++++.--..+|+.+  .++|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            445677778888877665 345    233 57777777643222555433  246777777766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.001  Score=59.77  Aligned_cols=39  Identities=31%  Similarity=0.444  Sum_probs=18.3

Q ss_pred             CCCCCcEEeCCCC--cCCCCCCcccccCCCCcEEeccCCcc
Q 041497           80 NLFRLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEASNNKL  118 (568)
Q Consensus        80 ~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~  118 (568)
                      .+++|+.|.++.|  ++++.++--...+++|++++++.|++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            3445555555555  33322332233445555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.47  E-value=0.00046  Score=71.82  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=16.1

Q ss_pred             cccCcccccccccccccccCCC-CCCccCCCCc
Q 041497          390 FLGNLTMLTQRLLEVNDLLGNI-PPSIGNCKNL  421 (568)
Q Consensus       390 ~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L  421 (568)
                      ....++.++.+.+..+...... ...+.+|+.|
T Consensus       357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            3455666666666665533322 2334445555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.35  E-value=0.0025  Score=57.39  Aligned_cols=97  Identities=24%  Similarity=0.294  Sum_probs=60.5

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCC--cccccCCCccc-ccccceeecccccccc-cCCccCcCCCCCCEEeC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSN--MFSGEIPTTLG-CTSLEYLCMQDNSFTG-SIPSTLSSLKSITELDL  522 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n--~l~~~~~~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l  522 (568)
                      +.+.+.+..++..  ..+-.+++|++|.++.|  ++.+.++.... +++|+.+++++|++.. .....+..+++|..||+
T Consensus        46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            4445556655522  24566788888888888  55444433333 6888888888888763 11234566777888888


Q ss_pred             CCCccccCcC---ccccccccCCeee
Q 041497          523 SRNNLSGHIP---QYLENLSFLSFLN  545 (568)
Q Consensus       523 ~~n~l~~~~~---~~~~~l~~L~~L~  545 (568)
                      ..|+.++.-.   ..|.-+++|+.++
T Consensus       124 ~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  124 FNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             ccCCccccccHHHHHHHHhhhhcccc
Confidence            8888765322   2344455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.00019  Score=64.65  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccC-chhhcCcCcCceee
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGES-PAEIGNLLKFQLLN  136 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~  136 (568)
                      .+++.|+.+++.+.++  +.+.+++.|++|.|+-|.|+.  .+.+..|++|+.|+|..|.+.... ...+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455555666555432  123456666666666666652  223556666666666666554211 12344556666666


Q ss_pred             cccccCC
Q 041497          137 IAENHLR  143 (568)
Q Consensus       137 l~~~~l~  143 (568)
                      |..|+-.
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            6555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.0004  Score=62.69  Aligned_cols=82  Identities=24%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCC
Q 041497          225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCT  304 (568)
Q Consensus       225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  304 (568)
                      +.+.+.|+.-+|.+.++  .....++.|+.|.|+-|+|+...+  +..+++|++|.|..|.|.++..     +..+.++|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-----L~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-----LEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-----HHHHhcCc
Confidence            44556666666666543  233456667777777777765544  4566667777777666655432     23456666


Q ss_pred             cccEEEeccCc
Q 041497          305 KLEVLVLDSNR  315 (568)
Q Consensus       305 ~L~~L~l~~~~  315 (568)
                      +|+.|.+..|.
T Consensus        89 sLr~LWL~ENP   99 (388)
T KOG2123|consen   89 SLRTLWLDENP   99 (388)
T ss_pred             hhhhHhhccCC
Confidence            66666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.83  E-value=0.0014  Score=68.29  Aligned_cols=62  Identities=23%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             ccccceeecccccccccC-CccCcCCCCC--------------CEEeCCCCccc-cCcCccccc-cccCCeeecccCcc
Q 041497          490 CTSLEYLCMQDNSFTGSI-PSTLSSLKSI--------------TELDLSRNNLS-GHIPQYLEN-LSFLSFLNLSYNHF  551 (568)
Q Consensus       490 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L--------------~~L~l~~n~l~-~~~~~~~~~-l~~L~~L~l~~n~i  551 (568)
                      ++.++.+.+.++...... ...+.+++.|              +.|+++.+... ...-..... +..++.+++.+++.
T Consensus       361 ~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  361 CPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             CCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            667777777666643222 1233344433              56666665533 222222222 44455566665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.93  E-value=0.011  Score=31.33  Aligned_cols=12  Identities=50%  Similarity=0.791  Sum_probs=5.7

Q ss_pred             cceeeccccccc
Q 041497          493 LEYLCMQDNSFT  504 (568)
Q Consensus       493 L~~L~Ls~n~l~  504 (568)
                      |+.|+|++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.40  E-value=0.02  Score=30.34  Aligned_cols=19  Identities=26%  Similarity=0.558  Sum_probs=10.2

Q ss_pred             CceeeccCCcccccCCcccC
Q 041497           60 LRSINLANNSFRAEIPHEVG   79 (568)
Q Consensus        60 L~~L~ls~~~~~~~~~~~~~   79 (568)
                      |++|++++|.++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555666666555 4454443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.83  E-value=0.00089  Score=67.96  Aligned_cols=184  Identities=21%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             ceEEEcccCcccCCCC----hhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCc-ccccccccccc
Q 041497          331 MTGIAFGNNQISGFIP----DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNL-TMLTQRLLEVN  405 (568)
Q Consensus       331 l~~L~l~~~~l~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~  405 (568)
                      +..+.+.+|.+.+...    ..+.....|+.++++.|.+.......              +...+... ..++.|++..|
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~--------------l~~~l~~~~~~l~~L~l~~c  154 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARL--------------LCEGLRLPQCLLQTLELVSC  154 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHH--------------HHhhcccchHHHHHHHhhcc
Confidence            6667777777654332    23334444555555544443222000              00111111 34445555555


Q ss_pred             cccCCCC----CCccCCCCceEEEcccCCCCCC----CCCchhH----HhhhceEEEccCCcccccC----chhhhcCCC
Q 041497          406 DLLGNIP----PSIGNCKNLILLTTRKNKPSGT----MPRQLPR----IITLSVLLNLSDNLLSGHF----PAEVGKLKN  469 (568)
Q Consensus       406 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~----~~~l~~~l~Ls~n~l~~~~----~~~l~~l~~  469 (568)
                      .+++...    ..+..++.++.++++.|.+...    .+..+..    ...+ +.|.+++|.++...    ...+...++
T Consensus       155 ~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~l-e~L~L~~~~~t~~~c~~l~~~l~~~~~  233 (478)
T KOG4308|consen  155 SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSL-ETLKLSRCGVTSSSCALLDEVLASGES  233 (478)
T ss_pred             cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccH-HHHhhhhcCcChHHHHHHHHHHhccch
Confidence            5544322    2344456666666666655311    0111111    1112 44455555544211    123334444


Q ss_pred             -CcEEecCCCcccccCC----Cccc-c-cccceeecccccccccCC----ccCcCCCCCCEEeCCCCcccc
Q 041497          470 -LVSLDISSNMFSGEIP----TTLG-C-TSLEYLCMQDNSFTGSIP----STLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       470 -L~~L~ls~n~l~~~~~----~~~~-~-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~  529 (568)
                       +++|++..|.+.+...    ..+. + ..++.++++.|.++....    ..+..++.++.+.+.+|++..
T Consensus       234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence             5556666665542211    1111 2 455666666666554222    333444556666666666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.82  E-value=0.0061  Score=52.70  Aligned_cols=80  Identities=21%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCc-ccccCCCccc--ccccceeeccccc-ccccCCccCcCCCCCCEEeC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNM-FSGEIPTTLG--CTSLEYLCMQDNS-FTGSIPSTLSSLKSITELDL  522 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~~~--~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l  522 (568)
                      +.+|-+++.|.....+-+..++.++.|.+.+|. +.+.....++  .++|+.|+|++|. ||+.....+..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            556666666665556677778888888888884 3222222222  6788888888774 77666667777777877777


Q ss_pred             CCCc
Q 041497          523 SRNN  526 (568)
Q Consensus       523 ~~n~  526 (568)
                      ..=+
T Consensus       184 ~~l~  187 (221)
T KOG3864|consen  184 YDLP  187 (221)
T ss_pred             cCch
Confidence            6544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.41  E-value=0.0035  Score=55.24  Aligned_cols=88  Identities=19%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             hhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccC
Q 041497          463 EVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL  541 (568)
Q Consensus       463 ~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  541 (568)
                      .+......+.||++.|++- ..-..|+ ++.|..|+++.|++. ..|..+.+...+..+++..|..+ ..|..+...+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4556677788888888876 5555566 788888888888887 77777888888888888888877 457777888888


Q ss_pred             CeeecccCcccc
Q 041497          542 SFLNLSYNHFES  553 (568)
Q Consensus       542 ~~L~l~~n~i~~  553 (568)
                      +.+++.+|++.-
T Consensus       114 k~~e~k~~~~~~  125 (326)
T KOG0473|consen  114 KKNEQKKTEFFR  125 (326)
T ss_pred             chhhhccCcchH
Confidence            888888887543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.36  E-value=0.0032  Score=55.46  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             ccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCC
Q 041497           77 EVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL  156 (568)
Q Consensus        77 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  156 (568)
                      .+......+.||++.|++. ..-..|.-++.|.+++++.|++. ..|..++....++.+++..|+.+ ..|.+++..|++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455666677777777665 44445667777778888877776 56777888888888887777776 677888888888


Q ss_pred             CeEEeccCCCC
Q 041497          157 QEINVNGNRLG  167 (568)
Q Consensus       157 ~~L~l~~~~~~  167 (568)
                      +++++.++.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.53  E-value=0.074  Score=26.09  Aligned_cols=13  Identities=46%  Similarity=0.705  Sum_probs=5.2

Q ss_pred             CCcEEecCCCccc
Q 041497          469 NLVSLDISSNMFS  481 (568)
Q Consensus       469 ~L~~L~ls~n~l~  481 (568)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.81  E-value=0.0022  Score=65.21  Aligned_cols=203  Identities=23%  Similarity=0.186  Sum_probs=101.2

Q ss_pred             CCeEecCCCccccccc----CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCC-CcccEEEeccCcccCcCchhhhc
Q 041497          252 LQKLDINRNLFSGKVS----INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC-TKLEVLVLDSNRFGAVLPFSLAN  326 (568)
Q Consensus       252 L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~  326 (568)
                      +..+.|.+|.+.....    ..+...+.|..|++++|++.+...  ..+...+... ..++.|++..|.++......+  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~--~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l--  164 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA--RLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL--  164 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH--HHHHhhcccchHHHHHHHhhcccccccchHHH--
Confidence            6667777776653322    224556666777777776663221  1223333333 445555555555544322221  


Q ss_pred             ccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh--------------ccCCCeeECccCccccc----cC
Q 041497          327 LSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI--------------LKSLQMLFLHENVLQGT----IP  388 (568)
Q Consensus       327 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------~~~L~~L~l~~~~~~~~----~~  388 (568)
                                         ...+.....++.++++.|.+....              ..+++++.+..|.++..    +.
T Consensus       165 -------------------~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  165 -------------------AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             -------------------HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence                               222333334444444444432111              33466666666665422    11


Q ss_pred             ccccCccc-ccccccccccccCC----CCCCccCC-CCceEEEcccCCCCCCCCCchh----HHhhhceEEEccCCcccc
Q 041497          389 SFLGNLTM-LTQRLLEVNDLLGN----IPPSIGNC-KNLILLTTRKNKPSGTMPRQLP----RIITLSVLLNLSDNLLSG  458 (568)
Q Consensus       389 ~~~~~~~~-L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~----~~~~l~~~l~Ls~n~l~~  458 (568)
                      ..+...+. +..++++.|.+.+.    ....+..+ ..++.+++..|++.......+.    .+..+ +.+.+++|.+..
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l-~~l~l~~n~l~~  304 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQL-EELSLSNNPLTD  304 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHH-HHhhcccCcccc
Confidence            23444455 66678887777543    12234444 5677778888877666544433    23323 566777777663


Q ss_pred             cCc----hhhhcCCCCcEEecCCC
Q 041497          459 HFP----AEVGKLKNLVSLDISSN  478 (568)
Q Consensus       459 ~~~----~~l~~l~~L~~L~ls~n  478 (568)
                      ...    ..+.....+..+-+.++
T Consensus       305 ~~~~~~~~~l~~~~~~~~~~l~~~  328 (478)
T KOG4308|consen  305 YGVELLLEALERKTPLLHLVLGGT  328 (478)
T ss_pred             HHHHHHHHHhhhcccchhhhcccc
Confidence            221    12333445555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.82  E-value=0.04  Score=47.79  Aligned_cols=82  Identities=20%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCccccc-CCcccC-CCCCCcEEeCCCC-cCCCCCCcccccCCCCcE
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAE-IPHEVG-NLFRLQNLTLTNN-YFSGKIPTNLSRCSNLVK  110 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~-~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~  110 (568)
                      -.|..+|-+++.|.......+.+++.++.|.+.+++--+. -.+.++ -.++|+.|++++| +||+.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3466777777777666556666667777777666642211 111111 2356666666655 555444444555666666


Q ss_pred             EeccC
Q 041497          111 FEASN  115 (568)
Q Consensus       111 L~l~~  115 (568)
                      |.+..
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.52  E-value=0.32  Score=26.89  Aligned_cols=19  Identities=47%  Similarity=0.613  Sum_probs=9.9

Q ss_pred             CCCCEEeCCCCccccCcCc
Q 041497          515 KSITELDLSRNNLSGHIPQ  533 (568)
Q Consensus       515 ~~L~~L~l~~n~l~~~~~~  533 (568)
                      ++|++|++++|.+....+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4555556666555544333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.52  E-value=0.32  Score=26.89  Aligned_cols=19  Identities=47%  Similarity=0.613  Sum_probs=9.9

Q ss_pred             CCCCEEeCCCCccccCcCc
Q 041497          515 KSITELDLSRNNLSGHIPQ  533 (568)
Q Consensus       515 ~~L~~L~l~~n~l~~~~~~  533 (568)
                      ++|++|++++|.+....+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4555556666555544333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.22  E-value=0.1  Score=28.30  Aligned_cols=14  Identities=36%  Similarity=0.641  Sum_probs=5.6

Q ss_pred             CCCCEEeCCCCccc
Q 041497          515 KSITELDLSRNNLS  528 (568)
Q Consensus       515 ~~L~~L~l~~n~l~  528 (568)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444455444444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.37  E-value=0.37  Score=26.63  Aligned_cols=16  Identities=19%  Similarity=0.303  Sum_probs=9.4

Q ss_pred             cccceeeccccccccc
Q 041497          491 TSLEYLCMQDNSFTGS  506 (568)
Q Consensus       491 ~~L~~L~Ls~n~l~~~  506 (568)
                      ++|+.|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666633

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.37  E-value=0.37  Score=26.63  Aligned_cols=16  Identities=19%  Similarity=0.303  Sum_probs=9.4

Q ss_pred             cccceeeccccccccc
Q 041497          491 TSLEYLCMQDNSFTGS  506 (568)
Q Consensus       491 ~~L~~L~Ls~n~l~~~  506 (568)
                      ++|+.|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666633

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	568
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-34
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-34
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		8e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		8e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 240/504 (47%), Gaps = 56/504 (11%)
Query: 25  TGVTCGHRHQRVIGLDLRHQSIGGFLSPF--VGNLSFLRSINLANNSFRAEIPHEVG--- 79
           +G  C      +  LDL   S+ G ++    +G+ S L+ +N+++N+   + P +V    
Sbjct: 91  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 145
Query: 80  NLFRLQNLTLTNNYFSGK--IPTNLSR-CSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136
            L  L+ L L+ N  SG   +   LS  C  L     S NK++G+   ++   +  + L+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD 203
Query: 137 IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP 196
           ++ N+    +P  +G+ SALQ ++++GN+L G      S    L   N+  NQF G  PP
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLD 256
           +  + SL+Y+ +  N + G +P  +      L    +SGN+  G++     + + L+ L 
Sbjct: 263 LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 257 INRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR 315
           ++ N FSG++ ++    ++ L  L+L  N         L  ++       L  L L SN 
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNN 376
Query: 316 F-GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----- 369
           F G +LP    N   T+  +   NN  +G IP  ++N   L +L + FN L+ TI     
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 370 -LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
            L  L+ L L  N+L+G IP  L  +  L   +L+ NDL G IP  + NC NL  ++   
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 429 NKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488
           N+ +G +P+                          +G+L+NL  L +S+N FSG IP  L
Sbjct: 497 NRLTGEIPKW-------------------------IGRLENLAILKLSNNSFSGNIPAEL 531
Query: 489 G-CTSLEYLCMQDNSFTGSIPSTL 511
           G C SL +L +  N F G+IP+ +
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 154/340 (45%), Gaps = 49/340 (14%)
Query: 233 ISGNNLTGSLQD--SLSNATNLQKLDINRNL--FSGKVSINFGGLQ--NLSWLNLGKNNL 286
           +S N+L+G +    SL + + L+ L+++ N   F GKVS   GGL+  +L  L+L  N++
Sbjct: 104 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GGLKLNSLEVLDLSANSI 160
Query: 287 -----------------------GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
                                  G + + D+D    ++ C  LE L + SN F   +PF 
Sbjct: 161 SGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF- 215
Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLH 379
           L + S  +  +    N++SG     I+    L  L +  NQ    I    LKSLQ L L 
Sbjct: 216 LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 380 ENVLQGTIPSFL-GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
           EN   G IP FL G    LT   L  N   G +PP  G+C  L  L    N  SG +P  
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 439 LPRIITXXXXXXXXXXXXXGHFPAEVGKLK-NLVSLDISSNMFSGEIPTTLGCT----SL 493
               +              G  P  +  L  +L++LD+SSN FSG I   L C     +L
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTL 393
Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
           + L +Q+N FTG IP TLS+   +  L LS N LSG IP 
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 240/504 (47%), Gaps = 56/504 (11%)
Query: 25  TGVTCGHRHQRVIGLDLRHQSIGGFLSPF--VGNLSFLRSINLANNSFRAEIPHEVG--- 79
           +G  C      +  LDL   S+ G ++    +G+ S L+ +N+++N+   + P +V    
Sbjct: 94  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 148
Query: 80  NLFRLQNLTLTNNYFSGK--IPTNLSR-CSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136
            L  L+ L L+ N  SG   +   LS  C  L     S NK++G+   ++   +  + L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD 206
Query: 137 IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP 196
           ++ N+    +P  +G+ SALQ ++++GN+L G      S    L   N+  NQF G  PP
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLD 256
           +  + SL+Y+ +  N + G +P  +      L    +SGN+  G++     + + L+ L 
Sbjct: 266 LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 257 INRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR 315
           ++ N FSG++ ++    ++ L  L+L  N         L  ++       L  L L SN 
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNN 379
Query: 316 F-GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----- 369
           F G +LP    N   T+  +   NN  +G IP  ++N   L +L + FN L+ TI     
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 370 -LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
            L  L+ L L  N+L+G IP  L  +  L   +L+ NDL G IP  + NC NL  ++   
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 429 NKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488
           N+ +G +P+                          +G+L+NL  L +S+N FSG IP  L
Sbjct: 500 NRLTGEIPKW-------------------------IGRLENLAILKLSNNSFSGNIPAEL 534
Query: 489 G-CTSLEYLCMQDNSFTGSIPSTL 511
           G C SL +L +  N F G+IP+ +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAM 558

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 154/340 (45%), Gaps = 49/340 (14%)
Query: 233 ISGNNLTGSLQD--SLSNATNLQKLDINRNL--FSGKVSINFGGLQ--NLSWLNLGKNNL 286
           +S N+L+G +    SL + + L+ L+++ N   F GKVS   GGL+  +L  L+L  N++
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GGLKLNSLEVLDLSANSI 163
Query: 287 -----------------------GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
                                  G + + D+D    ++ C  LE L + SN F   +PF 
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF- 218
Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLH 379
           L + S  +  +    N++SG     I+    L  L +  NQ    I    LKSLQ L L 
Sbjct: 219 LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 380 ENVLQGTIPSFL-GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
           EN   G IP FL G    LT   L  N   G +PP  G+C  L  L    N  SG +P  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 439 LPRIITXXXXXXXXXXXXXGHFPAEVGKLK-NLVSLDISSNMFSGEIPTTLGCT----SL 493
               +              G  P  +  L  +L++LD+SSN FSG I   L C     +L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTL 396
Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
           + L +Q+N FTG IP TLS+   +  L LS N LSG IP 
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 35/249 (14%)
Query: 123 PAEIGNLLKFQLLNIAE-NHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI 181
           P+ + NL     L I   N+L G +P +I  L+ L  + +    + G IP   S ++ L+
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 182 SFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
           + +   N  SG  PP I+++ +L  I    N   G++P   G          IS N LTG
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
            +  + +N  NL  +D++RN+  G  S+ FG  +N   ++L KN+L              
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA------------- 234
Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
                      D  + G         LS  + G+   NN+I G +P G+  L  L++L V
Sbjct: 235 ----------FDLGKVG---------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 361 EFNQLAVTI 369
            FN L   I
Sbjct: 276 SFNNLCGEI 284

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 87/220 (39%), Gaps = 32/220 (14%)
Query: 345 IPDGIANLVNLNALGVE-FNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTML 397
           IP  +ANL  LN L +   N L      A+  L  L  L++    + G IP FL  +  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 398 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXX 457
                  N L G +PPSI +  NL+ +T   N+ SG +P                     
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 458 GHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTS------------------------L 493
           G  P     L NL  +D+S NM  G+     G                           L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
             L +++N   G++P  L+ LK +  L++S NNL G IPQ
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V  L+ L  IN +NN      P  + NL +L ++ + NN  +   P  L+  +NL     
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
            NN++    P  + NL     L ++ N +     +++  L++LQ++N + N++    P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            +++  L   ++  N+ S +   +  +++LE +    N      PL I   L NL    +
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
           +GN     L+D  +L++ TNL  LD+  N  S    +   GL  L+ L LG N       
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
           L   TA        N L+ I+ ++N   L  L L  N    + P S     T +  + F 
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 335
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
           NN++S      +ANL N+N L    NQ++
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQIS 362

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 30/278 (10%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 68  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F   S N +T      L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF---SSNQVTD--LKPLANLTTLER 177
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 178 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 227
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 228 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 282
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 320

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 67/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
           N L  IT L N TKL  +++++N+   + P  LANL T +TG+   NNQI+   P  + N
Sbjct: 73  NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
           L NLN L +  N +    A++ L SLQ L    N                     +V DL
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSN---------------------QVTDL 166
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
                  + N   L  L    NK S                             + + KL
Sbjct: 167 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 194
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
            NL SL  ++N  S   P  LG  T+L+ L +  N        TL+SL ++T+LDL+ N 
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 250
Query: 527 LSGHIP 532
           +S   P
Sbjct: 251 ISNLAP 256

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V  L+ L  IN +NN      P  + NL +L ++ + NN  +   P  L+  +NL     
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
            NN++    P  + NL     L ++ N +     +++  L++LQ+++ + N++    P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            +++  L   ++  N+ S +   +  +++LE +    N      PL I   L NL    +
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
           +GN     L+D  +L++ TNL  LD+  N  S    +   GL  L+ L LG N       
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
           L   TA        N L+ I+ ++N   L  L L  N    + P S     T +  + F 
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFS 335
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
           NN++S      +ANL N+N L    NQ++
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQIS 362

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 30/278 (10%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 68  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F   S N +T      L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF---SSNQVTD--LKPLANLTTLER 177
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 178 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 227
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 228 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 282
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 320

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 67/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
           N L  IT L N TKL  +++++N+   + P  LANL T +TG+   NNQI+   P  + N
Sbjct: 73  NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
           L NLN L +  N +    A++ L SLQ L    N                     +V DL
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---------------------QVTDL 166
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
                  + N   L  L    NK S                             + + KL
Sbjct: 167 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 194
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
            NL SL  ++N  S   P  LG  T+L+ L +  N        TL+SL ++T+LDL+ N 
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 250
Query: 527 LSGHIP 532
           +S   P
Sbjct: 251 ISNLAP 256

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 147/329 (44%), Gaps = 42/329 (12%)
Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V  L+ L  IN +NN      P  + NL +L ++ + NN  +   P  L+  +NL     
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
            NN++    P  + NL     L ++ N +     +++  L++LQ++N  GN++    P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            +++  L   ++  N+ S +   +  +++LE +    N      PL I   L NL    +
Sbjct: 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 223
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
           +GN     L+D  +L++ TNL  LD+  N  S    +   GL  L+ L LG N       
Sbjct: 224 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
           L   TA        N L+ I+ ++N   L  L L  N    + P S     T +  + F 
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFS 334
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
           NN++S      +ANL N+N L    NQ++
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQIS 361

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 68  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F    GN +T      L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF----GNQVTD--LKPLANLTTLER 176
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 177 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 226
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 227 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 281
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 282 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V  L+ L  IN +NN      P  + NL +L ++ + NN  +   P  L+  +NL     
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
            NN++    P  + NL     L ++ N +     +++  L++LQ+++ + N++    P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            +++  L   ++  N+ S +   +  +++LE +    N      PL I   L NL    +
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
           +GN     L+D  +L++ TNL  LD+  N  S    +   GL  L+ L LG N       
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
           L   TA        N L+ I+ ++N   L  L L  N    + P S     T +  + F 
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 335
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
           NN++S      +ANL N+N L    NQ++
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQIS 362

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 30/278 (10%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 68  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F   S N +T      L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF---SSNQVTD--LKPLANLTTLER 177
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 178 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 227
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 228 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 282
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 320

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 67/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
           N L  IT L N TKL  +++++N+   + P  LANL T +TG+   NNQI+   P  + N
Sbjct: 73  NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
           L NLN L +  N +    A++ L SLQ L    N                     +V DL
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---------------------QVTDL 166
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
                  + N   L  L    NK S                             + + KL
Sbjct: 167 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 194
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
            NL SL  ++N  S   P  LG  T+L+ L +  N        TL+SL ++T+LDL+ N 
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 250
Query: 527 LSGHIP 532
           +S   P
Sbjct: 251 ISNLAP 256

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 147/329 (44%), Gaps = 42/329 (12%)
Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V  L+ L  IN +NN      P  + NL +L ++ + NN  +   P  L+  +NL     
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
            NN++    P  + NL     L ++ N +     +++  L++LQ++N  GN++    P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            +++  L   ++  N+ S +   +  +++LE +    N      PL I   L NL    +
Sbjct: 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 223
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
           +GN     L+D  +L++ TNL  LD+  N  S    +   GL  L+ L LG N       
Sbjct: 224 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
           L   TA        N L+ I+ ++N   L  L L  N    + P S     T +  + F 
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 334
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
           NN++S      +ANL N+N L    NQ++
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQIS 361

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 68  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F    GN +T      L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF----GNQVTD--LKPLANLTTLER 176
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 177 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 226
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 227 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 281
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 282 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 72  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 126
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F    GN +T      L+N T L++
Sbjct: 127 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF----GNQVTD--LKPLANLTTLER 180
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 181 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 230
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 231 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 285
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 286 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 323

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 105/246 (42%), Gaps = 68/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
           N L  IT L N TKL  +++++N+   + P  LANL T +TG+   NNQI+   P  + N
Sbjct: 77  NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 131
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
           L NLN L +  N +    A++ L SLQ L            SF GN         +V DL
Sbjct: 132 LTNLNRLELSSNTISDISALSGLTSLQQL------------SF-GN---------QVTDL 169
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
                  + N   L  L    NK S                             + + KL
Sbjct: 170 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 197
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
            NL SL  ++N  S   P  LG  T+L+ L +  N        TL+SL ++T+LDL+ N 
Sbjct: 198 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 253
Query: 527 LSGHIP 532
           +S   P
Sbjct: 254 ISNLAP 259

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +N + N L    P  + NL+ L +I +N N++    P   +++ NL    +  NQ + + 
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 127
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
            P+ N+++L  + +  N       L    +L  L F    GN +T      L+N T L++
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF----GNQVTD--LKPLANLTTLER 181
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LDI+ N  S  +S+    L NL  L          T N +  IT L   T L+ L L+ N
Sbjct: 182 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 231
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
           +   +   +LA+L T +T +   NNQIS   P  ++ L  L  L +  NQ++    +  L
Sbjct: 232 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 286
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
            +L  L L+EN L+   P S L NLT LT     ++D+
Sbjct: 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 105/246 (42%), Gaps = 68/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
           N L  IT L N TKL  +++++N+   + P  LANL T +TG+   NNQI+   P  + N
Sbjct: 78  NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 132
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
           L NLN L +  N +    A++ L SLQ L            SF GN         +V DL
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQL------------SF-GN---------QVTDL 170
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
                  + N   L  L    NK S                             + + KL
Sbjct: 171 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 198
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
            NL SL  ++N  S   P  LG  T+L+ L +  N        TL+SL ++T+LDL+ N 
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254
Query: 527 LSGHIP 532
           +S   P
Sbjct: 255 ISNLAP 260

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
           L NL + I++GN L           TNL++L +  N         F  L NL++LNL  N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
            L +      D    LTN T+L+   L  N+  + LP  + +  T +  +    NQ+   
Sbjct: 144 QLQSLPKGVFD---KLTNLTELD---LSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS- 195
Query: 345 IPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV 404
           +PDG+            F++L      SLQ ++LH+N    T P        + +    V
Sbjct: 196 VPDGV------------FDRLT-----SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV 238
Query: 405 NDLLGNIPPSIGNC 418
            +  G++ P    C
Sbjct: 239 RNSAGSVAPDSAKC 252

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 251 NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310
           + +KLD+     +      F GL  L+WLNL  N L T +A   D +      T+L  L 
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLG 89
Query: 311 LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN-LVNLNALGVEFNQL---- 365
           L +N+  A LP  + +  T +  +  G NQ+   +P G+ + L  L  L +  NQL    
Sbjct: 90  LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 366 --AVTILKSLQMLFLHENVLQGTIP----SFLGNLTMLT 398
             A   L +LQ L L  N LQ ++P      LG L  +T
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 251 NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310
           + +KLD+     +      F GL  L+WLNL  N L T +A   D +      T+L  L 
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLG 89
Query: 311 LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN-LVNLNALGVEFNQL---- 365
           L +N+  A LP  + +  T +  +  G NQ+   +P G+ + L  L  L +  NQL    
Sbjct: 90  LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 366 --AVTILKSLQMLFLHENVLQGTIP----SFLGNLTMLT 398
             A   L +LQ L L  N LQ ++P      LG L  +T
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSAL 156
           IP+N+   ++  K +  +NKL+         L K +LL + +N L+  LPA I   L  L
Sbjct: 31  IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87
Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHRNIYHG 215
           + + V  N+L          + NL    +  NQ   + P + ++++ L Y+ +  N    
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146
Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
           SLP  +   L +L+   +  N L    + +    T L+ L ++ N         F  L+ 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 276 LSWLNLGKN 284
           L  L L +N
Sbjct: 207 LKMLQLQEN 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	568
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-117
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-110
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  364 bits (936), Expect = e-117
 Identities = 146/529 (27%), Positives = 234/529 (44%), Gaps = 31/529 (5%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LD+   +    + PF+G+ S L+ ++++ N    +    +     L+ L +++N F G I
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEI-GNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           P       +L     + NK  GE P  + G       L+++ NH  G +P   G+ S L+
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 158 EINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRNIYH 214
            + ++ N   G +P  T   +R L   ++  N+FSG  P    N  +SL  + +  N + 
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 215 GSLPLDIGVN-LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL 273
           G +  ++  N    L+   +  N  TG +  +LSN + L  L ++ N  SG +  + G L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 274 QNLSWLNLGKNNL-GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMT 332
             L  L L  N L G            L     LE L+LD N     +P  L+N  T + 
Sbjct: 442 SKLRDLKLWLNMLEGE-------IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLN 493

Query: 333 GIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGT 386
            I+  NN+++G IP  I  L NL  L +  N  +  I       +SL  L L+ N+  GT
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 387 IPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP--SGTMPRQLPRIIT 444
           IP+ +   +      +  N + G     I N           N     G    QL R+ T
Sbjct: 554 IPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 445 LSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSF 503
            +   N++  +  GH         +++ LD+S NM SG IP  +G    L  L +  N  
Sbjct: 610 RNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 504 TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           +GSIP  +  L+ +  LDLS N L G IPQ +  L+ L+ ++LS N+  
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  344 bits (885), Expect = e-110
 Identities = 155/565 (27%), Positives = 247/565 (43%), Gaps = 50/565 (8%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSI---GGFLSPFVGNLS 58
           K  L D   +   W+++ N C + GVTC  R  +V  +DL  + +      +S  + +L+
Sbjct: 21  KDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77

Query: 59  FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPT--NLSRCSNLVKFEASNN 116
            L S+ L+N+     +         L +L L+ N  SG + T  +L  CS L     S+N
Sbjct: 78  GLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 117 KLAGESPAEIG-NLLKFQLLNIAENHLRGQLPASI---GNLSALQEINVNGNRLGGRIPS 172
            L        G  L   ++L+++ N + G              L+ + ++GN++ G +  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

Query: 173 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI 232
             S   NL   +V  N FS   P + + S+L+++ I  N   G     I      L+   
Sbjct: 197 --SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLN 253

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG-LQNLSWLNLGKNNL-GTRT 290
           IS N   G +        +LQ L +  N F+G++     G    L+ L+L  N+  G   
Sbjct: 254 ISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-- 309

Query: 291 ANDLDFITLLTNCTKLEVLVLDSNRF-GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI 349
                      +C+ LE L L SN F G +   +L  +   +  +    N+ SG +P+ +
Sbjct: 310 -----VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESL 363

Query: 350 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGN--LTMLTQRLLEVNDL 407
            NL                   SL  L L  N   G I   L       L +  L+ N  
Sbjct: 364 TNL-----------------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKL 467
            G IPP++ NC  L+ L    N  SGT+P  L  +  L   L L  N+L G  P E+  +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIPQELMYV 465

Query: 468 KNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
           K L +L +  N  +GEIP+ L  CT+L ++ + +N  TG IP  +  L+++  L LS N+
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 527 LSGHIPQYLENLSFLSFLNLSYNHF 551
            SG+IP  L +   L +L+L+ N F
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  297 bits (763), Expect = 7e-92
 Identities = 132/519 (25%), Positives = 214/519 (41%), Gaps = 46/519 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGK 97
           L++      G + P    L  L+ ++LA N F  EIP  + G    L  L L+ N+F G 
Sbjct: 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAE-IGNLLKFQLLNIAENHLRGQLPASIGNLSA- 155
           +P     CS L     S+N  +GE P + +  +   ++L+++ N   G+LP S+ NLSA 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 156 LQEINVNGNRLGGRIPST--RSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNI 212
           L  ++++ N   G I     ++    L    +  N F+G  PP ++N S L  + +  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272
             G++P  +G +L  LR   +  N L G +   L     L+ L ++ N  +G++      
Sbjct: 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 273 LQNLSWLNLGKNNL-GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331
             NL+W++L  N L G            +     L +L L +N F   +P  L +  + +
Sbjct: 489 CTNLNWISLSNNRLTGE-------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-L 540

Query: 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFL 391
             +    N  +G IP  +                            +  N + G    ++
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGK----------------------IAANFIAGKRYVYI 578

Query: 392 GNLTMLTQRLLEVND--LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 449
            N  M  +     N     G     +                 G          ++  L 
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL- 637

Query: 450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIP 508
           ++S N+LSG+ P E+G +  L  L++  N  SG IP  +G    L  L +  N   G IP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 509 STLSSLKSITELDLSRNNLSGHIPQY--LENLSFLSFLN 545
             +S+L  +TE+DLS NNLSG IP+    E      FLN
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  264 bits (678), Expect = 1e-79
 Identities = 108/443 (24%), Positives = 191/443 (43%), Gaps = 30/443 (6%)

Query: 127 GNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG 186
             +    L +   N     + +S+ +L+ L+ + ++ + + G +        +L S ++ 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSLDLS 108

Query: 187 LNQFSGMFPP---INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 243
            N  SG       + + S L+++ +  N       +  G+ L +L    +S N+++G+  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 244 DSL---SNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
                      L+ L I+ N  SG   ++     NL +L++  NN  T        I  L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTG-------IPFL 219

Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
            +C+ L+ L +  N+       +++   T +  +   +NQ  G IP     L +L  L +
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276

Query: 361 EFNQLAVTI-------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
             N+    I         +L  L L  N   G +P F G+ ++L    L  N+  G +P 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 414 -SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGK--LKNL 470
            ++   + L +L    N+ SG +P  L  +    + L+LS N  SG     + +     L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 471 VSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529
             L + +N F+G+IP TL  C+ L  L +  N  +G+IPS+L SL  + +L L  N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 530 HIPQYLENLSFLSFLNLSYNHFE 552
            IPQ L  +  L  L L +N   
Sbjct: 457 EIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.8 bits (234), Expect = 3e-20
 Identities = 33/139 (23%), Positives = 59/139 (42%)

Query: 35  RVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYF 94
           +            G  S  +  LS     N+ +  +         N   +  L ++ N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 95  SGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLS 154
           SG IP  +     L      +N ++G  P E+G+L    +L+++ N L G++P ++  L+
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 155 ALQEINVNGNRLGGRIPST 173
            L EI+++ N L G IP  
Sbjct: 705 MLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  241 bits (618), Expect = 5e-72
 Identities = 90/589 (15%), Positives = 183/589 (31%), Gaps = 73/589 (12%)

Query: 12  TSSWNNSINLCQWT---GVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANN 68
            ++WN +  L  W    GV+    + RV GL L      G +   +G L+ L  + L ++
Sbjct: 57  GANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 69  SFR----AEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSR--CSNLVKFEASNNKLAGES 122
             +       P  +      +       ++         R   S+L+K   +++      
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 123 PAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLIS 182
                  LK   +    N++   +  ++  L+ L++  +  +              N   
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 183 FNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 242
                 Q+       +N+  L  + ++       LP  +   LP ++   ++ N      
Sbjct: 235 ----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGE 289

Query: 243 QD--------SLSNATNLQKLDINRN-LFSGKVSINFGGLQNLSWLNLGKNNLGTRTAND 293
           Q                +Q + I  N L +  V  +   ++ L  L    N L       
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----- 344

Query: 294 LDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD-GIANL 352
              +    +  KL  L L  N+    +P +    +  +  ++F +N++          ++
Sbjct: 345 --KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 353 VNLNALGVEFNQL-------------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQ 399
             ++A+   +N++                   ++  + L  N +           + L+ 
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 400 ------RLLEV-NDLLGNIPPSIGNCKNLILLTTRKNK----PSGTMPRQLPRIITLSVL 448
                  L E+  + L +   +  N   L  +  R NK            LP ++ +   
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI--- 518

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDI------SSNMFSGEIPTTLG-CTSLEYLCMQDN 501
            +LS N  S  FP +      L    I        N    E P  +  C SL  L +  N
Sbjct: 519 -DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 502 SFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550
                      ++   + LD+  N        Y+          L Y+ 
Sbjct: 577 DIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (424), Expect = 7e-45
 Identities = 65/447 (14%), Positives = 132/447 (29%), Gaps = 69/447 (15%)

Query: 125 EIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG----RIPSTRSHVRNL 180
            + +  +   L++      G++P +IG L+ L+ + +  +          P   S   + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 181 ISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN 237
                    +   F    P  + S L    I+ +    S+                  NN
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNN 194

Query: 238 LTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFI 297
           +T  +  ++   T L++  +  + F  +        +N  +    K              
Sbjct: 195 IT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK--------- 244

Query: 298 TLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNA 357
               N   L  + + +      LP  L  L   M  I    N+          +   L  
Sbjct: 245 --WDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGIS-GEQLKDDWQALAD 300

Query: 358 LGVEFNQLAVTILKSLQMLFLHENVLQ-GTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG 416
                      + + +Q++++  N L+   + + L  +  L       N L G   P+ G
Sbjct: 301 AP---------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFG 350

Query: 417 NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDIS 476
           +   L                           LNL+ N ++       G  + + +L  +
Sbjct: 351 SEIKL-------------------------ASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 477 SNMFSGEIPTTLG---CTSLEYLCMQDNSFTG-------SIPSTLSSLKSITELDLSRNN 526
            N     IP        + +  +    N            +  T     +++ ++LS N 
Sbjct: 386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 527 LSGHIPQYLENLSFLSFLNLSYNHFES 553
           +S    +     S LS +NL  N    
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (395), Expect = 6e-41
 Identities = 62/437 (14%), Positives = 127/437 (29%), Gaps = 64/437 (14%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYF---- 94
            +  +            NL  L  + + N     ++P  +  L  +Q + +  N      
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 95  ----SGKIPTNLSRCSNLVKFEASNNKLA-GESPAEIGNLLKFQLLNIAENHLRGQLPAS 149
                 +   +      +       N L        +  + K  +L    N L G    +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA 348

Query: 150 IGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP---INNISSLEYI 206
            G+   L  +N+  N++     +       + + +   N+     P      ++S +  I
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAI 407

Query: 207 FIHRN-------IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR 259
               N            L         N+    +S N ++   ++  S  + L  +++  
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 260 NLFSG-------KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
           N+ +          + NF     L+ ++L  N L T+ ++D       T    L  + L 
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRA----TTLPYLVGIDLS 521

Query: 313 SNRFGAVLPFSLANLST-----TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV 367
            N F    P    N ST              N+     P+GI                  
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC--------------- 565

Query: 368 TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTR 427
               SL  L +  N ++        N+++L    ++ N  +      +       +    
Sbjct: 566 ---PSLTQLQIGSNDIRKVNEKITPNISVLD---IKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 428 KNKP---SGTMPRQLPR 441
            +K     G     + R
Sbjct: 620 YDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 33/174 (18%)

Query: 391 LGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN 450
           L +   +T   LE     G +P +IG    L                          +L 
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTEL-------------------------EVLA 111

Query: 451 LSDNLLSG----HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG---CTSLEYLCMQDNSF 503
           L  +          P  +    +          +             + L   C+  +  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 504 TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLF 557
             SI  +       T++    NN++  + + +  L+ L    +  + F ++++ 
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 501 NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWP 560
           + +      +L+S   +T L L     SG +P  +  L+ L  L L  +  +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (556), Expect = 7e-63
 Identities = 105/553 (18%), Positives = 191/553 (34%), Gaps = 46/553 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L+L H  +    +      S L S+++  N+     P     L  L+ L L +N  S   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
               + C+NL +    +N +                L+++ N L      +   L  LQE
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 159 INVNGNRLGGRIPSTRSHVRN--LISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHG 215
           + ++ N++            N  L    +  NQ     P   + I  L  +F++      
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 216 SLPLDIGV--NLPNLRFFIISGNNLTGSLQDSLSN--ATNLQKLDINRNLFSGKVSINFG 271
           SL   + +     ++R   +S + L+ +   +      TNL  LD++ N  +   + +F 
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN---------RFGAVLPF 322
            L  L +  L  NN+    ++       L     +  L L  +             +  F
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHS------LHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 323 SLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTIL----------KS 372
           S   L   +  +   +N I G   +    L+NL  L +  +  ++  L            
Sbjct: 324 SFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS-IGNCKNLILLTTRKNKP 431
           L +L L +N +          L  L    L +N++   +        +N+  +    NK 
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 432 SGTMPRQLPRIITLSVLLNLSDNLLSG--HFPAEVGKLKNLVSLDISSNMFSGEIPTTL- 488
                     + +L   L L    L      P+    L+NL  LD+S+N  +      L 
Sbjct: 443 LQLTRNSFALVPSLQR-LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 489 GCTSLEYLCMQDNSFT--------GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 540
           G   LE L +Q N+          G     L  L  +  L+L  N       +  ++L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 541 LSFLNLSYNHFES 553
           L  ++L  N+  +
Sbjct: 562 LKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (540), Expect = 1e-60
 Identities = 99/553 (17%), Positives = 205/553 (37%), Gaps = 47/553 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L+L+H  +           + L  ++L +NS +    +       L  L L++N  S   
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL--LNIAENHLRGQLPASIGNLSAL 156
                +  NL +   SNNK+      E+       L  L ++ N ++   P     +  L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 157 QEINVNGNRLGGRIPST---RSHVRNLISFNVGLNQFSGMFPPI---NNISSLEYIFIHR 210
             + +N  +LG  +           ++ + ++  +Q S            ++L  + +  
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 211 NIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN- 269
           N     +  D    LP L +F +  NN+      SL    N++ L++ R+     +S+  
Sbjct: 258 N-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 270 --------FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR--FGAV 319
                   F  L+ L  LN+  N++    +N      + T    L+ L L ++      +
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN------MFTGLINLKYLSLSNSFTSLRTL 370

Query: 320 LPFSLANLSTTM-TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-------LK 371
              +  +L+ +    +    N+IS    D  + L +L  L +  N++   +       L+
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 372 SLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL--LGNIPPSIGNCKNLILLTTRKN 429
           ++  ++L  N       +    +  L + +L    L  + + P      +NL +L    N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 430 KPSGTMPRQLPRIITLSVLLNLSDNLLS--------GHFPAEVGKLKNLVSLDISSNMFS 481
             +      L  +  L +L +L  N L+        G     +  L +L  L++ SN F 
Sbjct: 491 NIANINDDMLEGLEKLEIL-DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 482 GEIPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-NLS 539
                       L+ + +  N+      S  ++  S+  L+L +N ++    +       
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 540 FLSFLNLSYNHFE 552
            L+ L++ +N F+
Sbjct: 610 NLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  198 bits (505), Expect = 1e-55
 Identities = 86/507 (16%), Positives = 159/507 (31%), Gaps = 46/507 (9%)

Query: 57  LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116
            + +  +NL +N  R           +L +L +  N  S   P    +   L      +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSH 176
           +L+  S            L++  N ++            L  ++++ N L      T+  
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 177 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN 236
           + NL    +  N+   +     +I                          +L+   +S N
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIF----------------------ANSSLKKLELSSN 181

Query: 237 NLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFG---GLQNLSWLNLGKNNLGTRTAND 293
            +             L  L +N       ++          ++  L+L  + L T +   
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 294 LDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLV 353
              +      T L +L L  N    V   S A L   +       N I       +  L 
Sbjct: 242 FLGL----KWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 354 NLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
           N+  L ++ +              +    L          L  L    +E ND+ G    
Sbjct: 297 NVRYLNLKRS---------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 414 SIGNCKNLILLTTRKNKPS-GTMPRQLPRIITLSVL--LNLSDNLLSGHFPAEVGKLKNL 470
                 NL  L+   +  S  T+  +    +  S L  LNL+ N +S         L +L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 471 VSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528
             LD+  N    E+      G  ++  + +  N +     ++ + + S+  L L R  L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 529 G--HIPQYLENLSFLSFLNLSYNHFES 553
                P   + L  L+ L+LS N+  +
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (482), Expect = 2e-52
 Identities = 82/509 (16%), Positives = 157/509 (30%), Gaps = 45/509 (8%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
               + ++     ++P ++     +  L LT+N        N +R S L   +   N ++
Sbjct: 6   HEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
              P     L   ++LN+  N L      +    + L E+++  N +     +     +N
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 180 LISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGV-NLPNLRFFIISGNN 237
           LI+ ++  N  S         + +L+ + +  N        ++ +    +L+   +S N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 238 LTGSLQDSLSNATNLQKLDINRNLFSGKVSINFG---GLQNLSWLNLGKNNLGTRTANDL 294
           +             L  L +N       ++          ++  L+L  + L T +    
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 295 DFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVN 354
             +      T L +L L  N    V   S A L   +       N I       +  L N
Sbjct: 243 LGL----KWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 355 LNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS 414
           +  L ++ +              +    L          L  L    +E ND+ G     
Sbjct: 298 VRYLNLKRS---------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLD 474
                NL  L+   +  S          +T    ++L+                 L  L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLR-------TLTNETFVSLA--------------HSPLHILN 387

Query: 475 ISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIP 532
           ++ N  S            LE L +  N     +       L++I E+ LS N       
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 533 QYLENLSFLSFLNLSYNHFESKSLFVWPF 561
                +  L  L L     ++      PF
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPF 476

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (439), Expect = 1e-46
 Identities = 95/536 (17%), Positives = 180/536 (33%), Gaps = 69/536 (12%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVG---NLFRLQNLTLTNNYFS 95
           L+L    I  F       +  L  + L N      +  ++        ++NL+L+N+  S
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 96  GKIPTNLS--RCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNL 153
               T     + +NL   + S N L          L + +   +  N+++     S+  L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 154 SALQEINVNGN---------RLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSL 203
             ++ +N+  +          L      +   ++ L   N+  N   G+   +   + +L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 204 EYIFIHRN-IYHGSLPLDIGVNLPN--LRFFIISGNNLTGSLQDSLSNATNLQKLDINRN 260
           +Y+ +  +     +L  +  V+L +  L    ++ N ++    D+ S   +L+ LD+  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 261 LFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAV 319
               +++   + GL+N+  + L  N                     L+ L+L       V
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKY------LQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 320 --LPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLF 377
              P     L   +T +   NN I+    D +  L  L  L ++ N LA           
Sbjct: 470 DSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA----------R 518

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPR 437
           L ++   G    FL  L+ L    LE N           +   L                
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL---------------- 562

Query: 438 QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG--CTSLEY 495
                     +++L  N L+    +      +L SL++  N+ +       G    +L  
Sbjct: 563 ---------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 496 LCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLS 547
           L M+ N F  +  S    +  I E   +   LS H     P +        F   S
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  136 bits (344), Expect = 5e-34
 Identities = 74/349 (21%), Positives = 122/349 (34%), Gaps = 32/349 (9%)

Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
           +      S   LT    D     TN+  L++  N      + NF     L+ L++G N +
Sbjct: 5   SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 287 GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIP 346
                       L      L+VL L  N    +   + A   T +T +   +N I     
Sbjct: 62  SKLEPE------LCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKN 114

Query: 347 DGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLG--NLTMLT 398
           +      NL  L +  N L+ T       L++LQ L L  N +Q      L     + L 
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 399 QRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--LNLSDNLL 456
           +  L  N +    P        L  L     +   ++  +L   +  + +  L+LS++ L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 457 SGHFPAEVGKLK--NLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS 513
           S         LK  NL  LD+S N  +     +      LEY  ++ N+       +L  
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 514 LKSITELDLSRN---------NLSGHIPQYLENLSFLSFLNLSYNHFES 553
           L ++  L+L R+         +L        + L  L  LN+  N    
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  206 bits (526), Expect = 5e-62
 Identities = 72/256 (28%), Positives = 105/256 (41%), Gaps = 23/256 (8%)

Query: 300 LTNCTKLEVLVLDSNRFG--AVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNA 357
            T   ++  L L          +P SLANL         G N + G IP  IA L  L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-- 103

Query: 358 LGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN 417
                             L++    + G IP FL  +  L       N L G +PPSI +
Sbjct: 104 ----------------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 418 CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISS 477
             NL+ +T   N+ SG +P        L   + +S N L+G  P     L NL  +D+S 
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 478 NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 536
           NM  G+     G   + + + +  NS    +   +   K++  LDL  N + G +PQ L 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 537 NLSFLSFLNLSYNHFE 552
            L FL  LN+S+N+  
Sbjct: 266 QLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (512), Expect = 5e-60
 Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 14/293 (4%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRHQ--RVIGLDLRHQSIGG--FLSPFVG 55
           K  L +P    SSW  + + C   W GV C    Q  RV  LDL   ++     +   + 
Sbjct: 15  KKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 56  NLSFLRSINLAN-NSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
           NL +L  + +   N+    IP  +  L +L  L +T+   SG IP  LS+   LV  + S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL-QEINVNGNRLGGRIPST 173
            N L+G  P  I +L     +    N + G +P S G+ S L   + ++ NRL G+IP T
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 174 RSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI 232
            +++ NL   ++  N   G       +  + + I + +N     L   +G    NL    
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG-LSKNLNGLD 250

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285
           +  N + G+L   L+    L  L+++ N   G++    G LQ         N 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (421), Expect = 6e-47
 Identities = 77/370 (20%), Positives = 127/370 (34%), Gaps = 80/370 (21%)

Query: 145 QLPASIGNLSALQ----EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNI 200
           Q+   +GN + L       +       G +  T +    + + ++        +P     
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----- 67

Query: 201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG-NNLTGSLQDSLSNATNLQKLDINR 259
                           +P  +  NLP L F  I G NNL G +  +++  T L  L I  
Sbjct: 68  ----------------IPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 260 NLFSGKVSINFGGLQNLSWLNLGKNNL-GTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318
              SG +      ++ L  L+   N L GT   +       +++   L  +  D NR   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-------ISSLPNLVGITFDGNRISG 163

Query: 319 VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFL 378
            +P S  + S   T +    N+++G IP   ANL                   +L  + L
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------------NLAFVDL 204

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
             N+L+G      G+     +  L  N L  ++   +G  KNL  L              
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL-------------- 249

Query: 439 LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCM 498
                      +L +N + G  P  + +LK L SL++S N   GEIP        +    
Sbjct: 250 -----------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 499 QDNSFTGSIP 508
            +N      P
Sbjct: 299 ANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 2e-30
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 3/182 (1%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRL-QNLTLTNNYFSGK 97
           LD  + ++ G L P + +L  L  I    N     IP   G+  +L  ++T++ N  +GK
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           IP   +   NL   + S N L G++    G+    Q +++A+N L   L   +G    L 
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSL 217
            +++  NR+ G +P   + ++ L S NV  N   G  P   N+   +      N      
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

Query: 218 PL 219
           PL
Sbjct: 308 PL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 87.2 bits (217), Expect = 5e-19
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGE--IPTTLG-CTSLEYLCMQD-NSFT 504
            +  +    G       +   + +LD+S         IP++L     L +L +   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 505 GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           G IP  ++ L  +  L ++  N+SG IP +L  +  L  L+ SYN   
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (535), Expect = 2e-60
 Identities = 111/539 (20%), Positives = 190/539 (35%), Gaps = 42/539 (7%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL    +    S    +   L+ ++L+    +        +L  L  L LT N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQ 157
               S  S+L K  A    LA      IG+L   + LN+A N ++  +LP    NL+ L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGL----NQFSGMFPPINNISSLEYIFIHRNIY 213
            ++++ N++     +    +  +   N+ L    N  + + P       L  + +  N  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 214 HGSLPLDIGVNLPNLRFFIISGNNLTGS---LQDSLSNATNLQKLDINRN------LFSG 264
             ++       L  L    +            +   S    L  L I          +  
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 265 KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSL 324
            +   F  L N+S  +L    +          +   +     + L L + +FG      L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL--------AVTILKSLQML 376
            +L               G       +L +L  L +  N L        +     SL+ L
Sbjct: 325 KSLKR------LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 377 FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTM 435
            L  N +     +FL  L  L     + ++L      S+  + +NLI L           
Sbjct: 379 DLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 436 PRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTLG-CTSL 493
                 + +L VL  ++ N    +F  ++  +L+NL  LD+S        PT     +SL
Sbjct: 438 NGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL-SFLSFLNLSYNHF 551
           + L M  N+F          L S+  LD S N++     Q L++  S L+FLNL+ N F
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  207 bits (529), Expect = 1e-59
 Identities = 87/508 (17%), Positives = 175/508 (34%), Gaps = 19/508 (3%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
            ++++L+ N  R    +   +   LQ L L+               S+L     + N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRL-GGRIPSTRSHVR 178
             +      L   Q L   E +L       IG+L  L+E+NV  N +   ++P   S++ 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 179 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSL---PLDIGVNLPNLRFFIIS 234
           NL   ++  N+   ++   +  +  +  + +  ++    +          +  L    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208

Query: 235 GNNLTGSL-QDSLSNATNLQKLDINRNLFSGKVSI---NFGGLQNLSWLNLGKNNLGTRT 290
            N  + ++ +  +     L+   +    F  + ++   +   L+ L  L + +  L    
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 291 ANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIA 350
               D I L    T +    L S     V  FS    +     +   N +   F    + 
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLK 325

Query: 351 NLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVL--QGTIPSFLGNLTMLTQRLLEVNDL 407
           +L  L     +       + L SL+ L L  N L  +G         T L    L  N +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKL 467
           +  +  +    + L  L  + +         +   +   + L++S       F      L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 468 KNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
            +L  L ++ N F       +     +L +L +         P+  +SL S+  L++S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 526 NLSGHIPQYLENLSFLSFLNLSYNHFES 553
           N         + L+ L  L+ S NH  +
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (459), Expect = 9e-50
 Identities = 95/547 (17%), Positives = 164/547 (29%), Gaps = 48/547 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL    I         +LS L ++ L  N  ++        L  LQ L       +   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 99  PTNLSRCSNLVKFEASNNKLAG-ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
              +     L +   ++N +   + P    NL   + L+++ N ++      +  L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 158 ----EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRN 211
                ++++ N +    P     +  L    +  N  S       I  ++ LE   +   
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 212 IY--HGSLPLDIGVNLPNLRFFIISGNNLT------GSLQDSLSNATNLQKLDINRNLFS 263
            +   G+L       L  L    I    L         + D  +  TN+    +      
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT-------------NCTKLEVLV 310
                +F        L L     G      L  +  LT             +   LE L 
Sbjct: 296 R--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 311 LDSNR--FGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT 368
           L  N   F      S     T++  +    N +   +      L  L  L  + + L   
Sbjct: 354 LSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 369 I-------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKN 420
                   L++L  L +     +         L+ L    +  N    N  P I    +N
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 421 LILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMF 480
           L  L   + +     P     + +L VL N+S N            L +L  LD S N  
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 481 SGEIPTTLG--CTSLEYLCMQDNSFTGSIPST--LSSLKSITELDLSRNNLSGHIPQYLE 536
                  L    +SL +L +  N F  +      L  +K   +L +    +    P   +
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

Query: 537 NLSFLSF 543
            +  LS 
Sbjct: 591 GMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 46/256 (17%), Positives = 79/256 (30%), Gaps = 39/256 (15%)

Query: 326 NLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLH 379
           NL  +   +    N +         +   L  L +   ++          L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 380 ENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL 439
            N +Q         L+ L + +    +L       IG+ K L  L               
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL--------------- 129

Query: 440 PRIITLSVLLNLSDNLL-SGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLC 497
                     N++ NL+ S   P     L NL  LD+SSN       T L     +  L 
Sbjct: 130 ----------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 498 ----MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFE 552
               +  N      P     +  + +L L  N  S ++ +  ++ L+ L    L    F 
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 553 SKSLFVWPFVDEIKGI 568
           ++          ++G+
Sbjct: 239 NEGNLEKFDKSALEGL 254

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (537), Expect = 3e-59
 Identities = 91/602 (15%), Positives = 185/602 (30%), Gaps = 99/602 (16%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQW---TGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLS 58
            S   +    + +WN +  L  W    GV   + + RV GL L      G +   +G L+
Sbjct: 289 YSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLT 347

Query: 59  FLRSINLANNSFRAEIPHEVGN--------LFRLQNLTLTNNYFSGKIPTNLSRCSNLVK 110
            L+ ++   +S         G+          R   + +            L+    L  
Sbjct: 348 ELKVLSFGTHSET-VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 111 FEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI 170
               N ++         +L   Q+ N+  N +   +  +I  L+ LQ I    +      
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNL-TNRITF-ISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 171 PSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR 229
            +      N         +         +N+  L  + ++       LP  +  +LP L+
Sbjct: 465 IAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQ 518

Query: 230 FFIISGNNLTG---------SLQDSLSNATNLQKLDINRNLFSG-KVSINFGGLQNLSWL 279
              I+ N              L D       +Q   +  N       S +   +  L  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN 339
           +   N +          +       KL  L LD N+    +P      +  + G+ F +N
Sbjct: 579 DCVHNKVRH--------LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHN 629

Query: 340 QISGFIPD-GIANLVNLNALGVEFNQL-----------AVTILKSLQMLFLHENVLQGTI 387
           ++          ++  + ++   +N++                 +   + L  N +Q   
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 388 PSFLGNLTMLTQRLLEVNDL-------LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLP 440
                  + ++  +L  N +       L     +  N   L                   
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL------------------- 730

Query: 441 RIITLSVLLNLSDNLLSGHFPAE--VGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYL- 496
                   ++L  N L+     +     L  L ++D+S N FS   PT     + L+   
Sbjct: 731 ------TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782

Query: 497 -----CMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
                  + N      P+ +++  S+ +L +  N++   + + L     L  L+++ N  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

Query: 552 ES 553
            S
Sbjct: 840 IS 841

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 5e-50
 Identities = 93/533 (17%), Positives = 170/533 (31%), Gaps = 29/533 (5%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L+     +    +     L  L  ++L              +  RL  L LT N      
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
            T LS    L         ++      + N    + L +  NH+             L+ 
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 159 INVNGNRLGGRIPSTRSHVRNL--ISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS 216
           ++   N +        S ++    +S N+  N  +G+ P   + +  + +          
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 217 LPLDI-GVNLPNLRFFIISGNNLTGSLQDSLSN--ATNLQKLDINRNLFSGKVSINFGGL 273
           +   +    + +L        +               +++ +++ ++ F    S  F   
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTG 333
             L  L+L   +L    +        L   + L+ LVL +N+F  +   S +N   ++T 
Sbjct: 278 SGLQELDLTATHLSELPSG-------LVGLSTLKKLVLSANKFENLCQISASNF-PSLTH 329

Query: 334 IAFGNNQISGFIPDG-IANLVNLNALGVEFNQLAVTI--------LKSLQMLFLHENVLQ 384
           ++   N     +  G + NL NL  L +  + +  +         L  LQ L L  N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 385 GTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTMPRQLPRII 443
                       L    L    L      S   N   L +L    +    +  +    + 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 444 TLSVLLNLSDNLLSGHFPAEVGKLKNLVS---LDISSNMFSGEIPTTL-GCTSLEYLCMQ 499
            L   LNL  N        +   L+ L     L +S    S            + ++ + 
Sbjct: 450 ALQH-LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 500 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
            N  T S    LS LK I  L+L+ N++S  +P  L  LS    +NL  N  +
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  176 bits (449), Expect = 2e-48
 Identities = 99/533 (18%), Positives = 171/533 (32%), Gaps = 31/533 (5%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL    I         +   L ++ L  N         +     L++L       S   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ- 157
              L     L      +N ++     +     K ++L+   N +       + +L     
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 158 -EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP---INNISSLEYI-FIHRNI 212
             +N+NGN + G I           S N G  Q   +       + I SL    F   + 
Sbjct: 182 LSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272
              S  +  G+   ++    +  +       ++    + LQ+LD+     S ++     G
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN-RFGAVLPFSLANLSTTM 331
           L  L  L L  N                +N   L  L +  N +   +    L NL   +
Sbjct: 300 LSTLKKLVLSANKFENLCQI------SASNFPSLTHLSIKGNTKRLELGTGCLENL-ENL 352

Query: 332 TGIAFGNNQI--SGFIPDGIANLVNLNALGVEFNQLAV------TILKSLQMLFLHENVL 383
             +   ++ I  S      + NL +L +L + +N+              L++L L    L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 384 QGTIP-SFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI 442
           +     S   NL +L    L  + L  +          L  L  + N       ++   +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 443 ITLSVL--LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQD 500
            TL  L  L LS   LS         LK +  +D+S N  +      L      YL +  
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532

Query: 501 NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
           N  +  +PS L  L     ++L +N L         N+ FL +   +    E 
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (405), Expect = 2e-42
 Identities = 83/509 (16%), Positives = 149/509 (29%), Gaps = 49/509 (9%)

Query: 61  RSINLANNSFRAEIPHEVGNLFR-LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
           ++ N  N     EIP   G L    + L  + N       T  SR  NL   + +  ++ 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
                   +  +   L +  N L      ++    AL+ +      +             
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP------ 124

Query: 180 LISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
                            ++N  +LE +++  N +  S+ L  G     L+      N + 
Sbjct: 125 -----------------LHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 240 GSLQDSLSNATNLQKLDIN-RNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
              ++ +S+      L +N        +            LN G           L   T
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLS-TTMTGIAFGNNQISGFIPDGIANLVNLNA 357
           +      L +   +      + P     L   ++  I    +       +       L  
Sbjct: 227 I----QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 358 LGVEFNQL-----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
           L +    L      +  L +L+ L L  N  +        N   LT   ++ N     + 
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 413 P-SIGNCKNLILLTTRKNK--PSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 469
              + N +NL  L    +    S     QL  +  L   LNLS N           +   
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS-LNLSYNEPLSLKTEAFKECPQ 401

Query: 470 LVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNL 527
           L  LD++      +   +       L+ L +  +    S       L ++  L+L  N+ 
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 528 SGHIPQY---LENLSFLSFLNLSYNHFES 553
                Q    L+ L  L  L LS+    S
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  177 bits (451), Expect = 1e-48
 Identities = 98/539 (18%), Positives = 175/539 (32%), Gaps = 40/539 (7%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           +DL    +    S    N S L+ ++L+              L  L NL LT N      
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQ 157
           P + S  ++L    A   KLA      IG L+  + LN+A N +   +LPA   NL+ L 
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGL----NQFSGMFPPINNISSLEYIFIHRNIY 213
            ++++ N +     +    +R     N+ L    N    +         L  + +  N  
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 214 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKL--------DINRNLFSGK 265
             ++      NL  L    +            +   + ++ L         +        
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 266 VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLA 325
             + F  L N+S ++L   ++          +  +    K + L +   +        L 
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 326 NLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI--------LKSLQMLF 377
            L +    +    N+ S  I      L +L+ L +  N L+ +           SL+ L 
Sbjct: 329 FLKS----LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS-IGNCKNLILLTTRKNKPSGTMP 436
           L  N     + +    L  L     + + L      S   + + L+ L            
Sbjct: 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 437 RQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL-GCTSLE 494
                + +L+  L ++ N    +  + V     NL  LD+S                 L+
Sbjct: 442 GIFLGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
            L M  N+      S  + L S++ LD S N +             L+F NL+ N    
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (405), Expect = 2e-42
 Identities = 81/515 (15%), Positives = 167/515 (32%), Gaps = 30/515 (5%)

Query: 58  SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117
           S  ++I+L+ N  +    +   N   LQ L L+                +L     + N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSH 176
           +   SP     L   + L   E  L       IG L  L+++NV  N +   ++P+  S+
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 177 VRNLISFNVGLNQFSG----MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI 232
           + NL+  ++  N            +     +             +       +  L    
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210

Query: 233 ISGNNLTGSLQ-DSLSNATNLQKLDINRNLFSGKVSIN------FGGLQNLSWLNLGKNN 285
           + GN  + ++    L N   L    +    F  + ++         GL +++        
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
               + + + F         +  + L       +              ++    Q+  F 
Sbjct: 271 TNDFSDDIVKF----HCLANVSAMSLAGVSIKYLEDVP---KHFKWQSLSIIRCQLKQFP 323

Query: 346 PDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRL 401
              +  L +L    +  N+ +++     L SL  L L  N L  +      +L   + R 
Sbjct: 324 TLDLPFLKSLT---LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 402 LEVND-LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHF 460
           L+++      +  +    + L  L  + +             +   + L++S       F
Sbjct: 381 LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 461 PAEVGKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSIT 518
                 L +L +L ++ N F     + +    T+L +L +              +L  + 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 519 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
            L++S NNL      +   L  LS L+ S+N  E+
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (261), Expect = 9e-24
 Identities = 84/465 (18%), Positives = 149/465 (32%), Gaps = 79/465 (16%)

Query: 96  GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA 155
           G +   +    N+  ++  + KL+ + P +I +  K   ++++ N L+     S  N S 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSSTKN--IDLSFNPLKILKSYSFSNFSE 57

Query: 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG 215
           LQ ++++   +          + +L +  +  N                           
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ------------------------ 93

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSG-KVSINFGGLQ 274
           S        L +L   +     L       +     L+KL++  N     K+   F  L 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGI 334
           NL  ++L  N + T T NDL F+           L +  N    +   +   +      +
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQ--VNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 335 AFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNL 394
             GN   S  +   + NL  L             + + +   F  E  L+   PS +  L
Sbjct: 212 R-GNFNSSNIMKTCLQNLAGL------------HVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 395 TMLTQRLLE--VNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 452
             +T         +   +         N+                           ++L+
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANV-------------------------SAMSLA 293

Query: 453 DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLS 512
              +   +  +V K     SL I           TL    L+ L +  N   GSI     
Sbjct: 294 GVSIK--YLEDVPKHFKWQSLSIIRCQLKQ--FPTLDLPFLKSLTLTMNK--GSISFKKV 347

Query: 513 SLKSITELDLSRNNLSGHIPQYLENLSFLS--FLNLSYNHFESKS 555
           +L S++ LDLSRN LS        +L   S   L+LS+N     S
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 1e-22
 Identities = 60/353 (16%), Positives = 102/353 (28%), Gaps = 57/353 (16%)

Query: 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285
            + +   +S N L      S SN + LQ LD++R          + GL +LS L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
           + + +          +  T LE LV                             +++   
Sbjct: 92  IQSFSPG------SFSGLTSLENLVAV-------------------------ETKLASLE 120

Query: 346 PDGIANLVNLNALGVEFNQLAVTI-------LKSLQMLFLHENVLQGTIPSFLGNLTMLT 398
              I  L+ L  L V  N +           L +L  + L  N +Q    + L  L    
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 399 QRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDN 454
           Q  L + D+  N    I         L  LT R N  S  + +   + +    +  L   
Sbjct: 181 QVNLSL-DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 455 LLSGHFPAEVGKLK--------NLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTG 505
                   E+ +           +    ++      +         ++  + +   S   
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 506 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV 558
                +        L + R  L         +L FL  L L+ N        V
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSISFKKV 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (358), Expect = 9e-37
 Identities = 107/500 (21%), Positives = 182/500 (36%), Gaps = 69/500 (13%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115
            L+      L   +    +     +L ++  L         K    +   +NL +   SN
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSN 77

Query: 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS 175
           N+L   +P  + NL K   + +  N +       + NL+ L  + +  N++    P    
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPL--K 131

Query: 176 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235
           ++ NL    +  N  S     ++ ++SL+ +     +     PL    NL  L    IS 
Sbjct: 132 NLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQV-TDLKPLA---NLTTLERLDISS 186

Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD 295
           N ++      L+  TNL+ L    N  S       G L NL  L+L  N L         
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD------- 235

Query: 296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNL 355
            I  L + T L  L L +N+   + P S   L T +T +  G NQIS   P  +A L  L
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNLAPLS--GL-TKLTELKLGANQISNISP--LAGLTAL 289

Query: 356 NALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI 411
             L +  NQL     ++ LK+L  L L+ N +    P  + +LT L +     N +  + 
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SD 345

Query: 412 PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLV 471
             S+ N  N+  L                         +   N +S   P  +  L  + 
Sbjct: 346 VSSLANLTNINWL-------------------------SAGHNQISDLTP--LANLTRIT 378

Query: 472 SLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 531
            L ++   ++          S+    +++ +     P+T+S   S TE D++ N  S   
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNT-VKNVTGALIAPATISDGGSYTEPDITWNLPSY-T 436

Query: 532 PQYLENLSFLSFLNLSYNHF 551
            +     S    +      F
Sbjct: 437 NEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (321), Expect = 8e-32
 Identities = 101/472 (21%), Positives = 172/472 (36%), Gaps = 69/472 (14%)

Query: 83  RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHL 142
            L + T+T +    +I    +  +  +K       +         +L +   L      +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 143 RGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISS 202
           +      +  L+ L +IN + N+L    P    ++  L+   +  NQ +    P+ N+++
Sbjct: 59  KS--IDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIAD-ITPLANLTN 113

Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLF 262
           L  + +  N      PL    NL NL    +S N ++     +LS  T+LQ+L     + 
Sbjct: 114 LTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVT 168

Query: 263 SGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPF 322
                     L  L  L++  N +          I++L   T LE L+  +N+   + P 
Sbjct: 169 D---LKPLANLTTLERLDISSNKVSD--------ISVLAKLTNLESLIATNNQISDITPL 217

Query: 323 S-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLF 377
             L NL      ++   NQ+       +A+L NL  L +  NQ+     ++ L  L  L 
Sbjct: 218 GILTNLDE----LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPR 437
           L  N +    P  L  LT LT   L  N L       I N KNL                
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNL---------------- 311

Query: 438 QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLC 497
                      L L  N +S    + V  L  L  L   +N  S  + +    T++ +L 
Sbjct: 312 ---------TYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLS 359

Query: 498 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549
              N  +   P  L++L  IT+L L+    +     Y  N+S  + +     
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 3e-31
 Identities = 98/452 (21%), Positives = 169/452 (37%), Gaps = 46/452 (10%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L      I       V  L+ L  IN +NN      P  + NL +L ++ + NN  +   
Sbjct: 51  LQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-- 104

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
            T L+  +NL      NN++    P  + NL     L ++ N +     +++  L++LQ+
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQ 160

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
           ++              +++  L   ++  N+ S     +  +++LE +    N      P
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP 216

Query: 219 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSW 278
           L     L NL    ++GN L      +L++ TNL  LD+  N  S        GL  L+ 
Sbjct: 217 LG---ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTE 269

Query: 279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFG 337
           L LG N +          I+ L   T L  L L+ N+   + P S L NL+     +   
Sbjct: 270 LKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPISNLKNLTY----LTLY 317

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGN 393
            N IS   P  +++L  L  L    N++    ++  L ++  L    N +    P  L N
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
           LT +TQ  L              N      +           P  +    + +   +++ 
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA--PATISDGGSYTEP-DITW 430

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIP 485
           NL S             V++   +  FSG + 
Sbjct: 431 NLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (292), Expect = 5e-28
 Identities = 88/383 (22%), Positives = 141/383 (36%), Gaps = 46/383 (12%)

Query: 178 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN 237
              +   +G    +       ++  +  +   R        ++    L NL     S N 
Sbjct: 24  AEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKSIDGVE---YLNNLTQINFSNNQ 79

Query: 238 LTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFI 297
           LT      L N T L  + +N N  +         L NL+ L L  N +          I
Sbjct: 80  LTDI--TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--------I 127

Query: 298 TLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLN 356
             L N T L  L L SN    +   S L +L      ++FGN          +ANL  L 
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ----LSFGNQVTD---LKPLANLTTLE 180

Query: 357 ALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
            L +  N++     +  L +L+ L    N +    P  LG LT L +  L  N L     
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDI 236

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--LNLSDNLLSGHFPAEVGKLKNL 470
            ++ +  NL  L    N+ S      L  +  L+ L  L L  N +S    + +  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISN-----LAPLSGLTKLTELKLGANQISN--ISPLAGLTAL 289

Query: 471 VSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530
            +L+++ N     I       +L YL +  N+ +   P  +SSL  +  L    N +S  
Sbjct: 290 TNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD- 345

Query: 531 IPQYLENLSFLSFLNLSYNHFES 553
               L NL+ +++L+  +N    
Sbjct: 346 -VSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 36/187 (19%)

Query: 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 429
           L       L +  +  T+     +L  +T   L+ + L       +    NL        
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTT--LQADRLGIKSIDGVEYLNNL-------- 70

Query: 430 KPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG 489
                              +N S+N L+   P  +  L  LV + +++N  +   P    
Sbjct: 71  -----------------TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA-N 110

Query: 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549
            T+L  L + +N  T   P  L +L ++  L+LS N +S      L  L+ L  L+    
Sbjct: 111 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ 166

Query: 550 HFESKSL 556
             + K L
Sbjct: 167 VTDLKPL 173

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 470 LVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529
           L S  I+ +    +I T           +   + T ++    + L  +T L   R  +  
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK- 59

Query: 530 HIPQYLENLSFLSFLNLSYNHFESKS 555
                +E L+ L+ +N S N     +
Sbjct: 60  -SIDGVEYLNNLTQINFSNNQLTDIT 84

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  136 bits (345), Expect = 4e-34
 Identities = 91/519 (17%), Positives = 173/519 (33%), Gaps = 43/519 (8%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEAS 114
            L+    + L+ N  R         L +LQ L L + Y    I         NL   +  
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQL--PASIGNLSALQEINVNGNRLGG-RIP 171
           ++K+    P     L     L +    L   +       NL AL  ++++ N++    + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 172 STRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPN 227
            +   + +L S +   NQ          P+   + L +  +  N  +  + +D G  +  
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 228 LRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLG 287
            R  ++   +++G       N   +       N  S   + +     ++     G +N+ 
Sbjct: 201 FRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 288 TRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD 347
               N    +   +    +  L L      ++       L      +    N+I+    +
Sbjct: 254 DPDQNTFAGLARSS----VRHLDLSHGFVFSLNSRVFETLKDLKV-LNLAYNKINKIADE 308

Query: 348 GIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRL 401
               L NL  L + +N L          L  +  + L +N +          L  L Q L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-QTL 367

Query: 402 LEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 461
               DL  N   +I    ++  +    NK   T+P+       + +  N  +NL   +F 
Sbjct: 368 ----DLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFL 422

Query: 462 AEVGKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSI-----PSTLSSL 514
               ++ +L  L ++ N FS            SLE L + +N    +            L
Sbjct: 423 L---RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 515 KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
             +  L L+ N L+   P    +L+ L  L+L+ N    
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 63/300 (21%), Positives = 106/300 (35%), Gaps = 20/300 (6%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL H  +    S     L  L+ +NLA N            L  LQ L L+ N      
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
            +N      +   +   N +A         L K Q L++ +N L      +I  + ++ +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
           I ++GN+L   +P        +      L     +   +  +  L+ + +++N +     
Sbjct: 386 IFLSGNKL-VTLPKINLTANLIHLSENRLENLD-ILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 219 LDIGVNLPNLRFFIISGNNLTGSLQ-----DSLSNATNLQKLDINRNLFSGKVSINFGGL 273
                  P+L    +  N L  + +     D     ++LQ L +N N  +      F  L
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

Query: 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTG 333
             L  L+L  N L       L    L  N   LE+L +  N+  A  P    +LS     
Sbjct: 504 TALRGLSLNSNRL-----TVLSHNDLPAN---LEILDISRNQLLAPNPDVFVSLSVLDIT 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 448 LLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTGS 506
           +       L+         L     L +S N       ++      L+ L +       +
Sbjct: 8   IAFYRFCNLTQVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 507 I-PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVD 563
           I      +L ++  LDL  + +    P   + L  L  L L +       L    F +
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  131 bits (332), Expect = 8e-33
 Identities = 93/527 (17%), Positives = 176/527 (33%), Gaps = 43/527 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LDL    +    S    +   L+ ++L+    +        +L  L  L LT N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR-GQLPASIGNLSALQ 157
               S  S+L K  A    LA      IG+L   + LN+A N ++  +LP    NL+ L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSL 217
            ++++ N++     +    +  +   N+ L+         N ++ +              
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL------NPMNFI-------------- 192

Query: 218 PLDIGVNLPNLRFFIISGNNLTGSL-QDSLSNATNLQKLDINRNLFSGK---VSINFGGL 273
                  +  L    +  N  + ++ +  +     L+   +    F  +      +   L
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTG 333
           + L  L + +  L        D I L    T +    L S     V  FS    +     
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQH 308

Query: 334 IAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVLQ--GTIPSF 390
           +   N +   F    + +L  L     +       + L SL+ L L  N L   G     
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 391 LGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK----PSGTMPRQLPRIITLS 446
               T L    L  N ++  +  +    + L  L  + +        ++   L  +I L 
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL- 426

Query: 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFT 504
              ++S       F      L +L  L ++ N F       +     +L +L +      
Sbjct: 427 ---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 505 GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
              P+  +SL S+  L+++ N L        + L+ L  + L  N +
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 1e-31
 Identities = 108/486 (22%), Positives = 167/486 (34%), Gaps = 23/486 (4%)

Query: 84  LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR 143
            +NL L+ N        +      L   + S  ++         +L     L +  N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNIS 201
                +   LS+LQ++      L         H++ L   NV  N       P   +N++
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII----SGNNLTGSLQDSLSNATNLQKLDI 257
           +LE++ +  N    S+       L  +    +    S N +   +Q        L KL +
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 258 NRNLFSGKVSIN-FGGLQNLSWLNLGKN---NLGTRTANDLDFITLLTNCTKLEVLVLDS 313
             N  S  V      GL  L    L      N G     D   +  L N T +E   L  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAY 266

Query: 314 NRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD-GIANLVNLNALGVEFNQLAVTILKS 372
             +       L N  T ++  +  +  I             +L  +  +F Q     LKS
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL--LGNIPPSIGNCKNLILLTTRKNK 430
           L+ L    N       S + +L  L    L  N L   G    S     +L  L    N 
Sbjct: 327 LKRLTFTSNKGG-NAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 431 PSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL- 488
              TM      +  L   L+   + L       V   L+NL+ LDIS             
Sbjct: 385 VI-TMSSNFLGLEQLEH-LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 489 GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 547
           G +SLE L M  NSF  +      + L+++T LDLS+  L    P    +LS L  LN++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 548 YNHFES 553
            N  +S
Sbjct: 503 SNQLKS 508

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 63/367 (17%), Positives = 112/367 (30%), Gaps = 51/367 (13%)

Query: 199 NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDIN 258
           +   L+ + + R     ++      +L +L   I++GN +      + S  ++LQKL   
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 259 RNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318
               +   +   G L+ L  LN+  N +              +N T LE L L SN+  +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 319 VLP---FSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQM 375
           +       L  +      +    N ++   P     +                    L  
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-------------------RLHK 204

Query: 376 LFLHENVLQGTIPS-FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGT 434
           L L  N     +    +  L  L    L + +          N  NL        +    
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--------NEGNLEKFDKSALEGLCN 256

Query: 435 MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLE 494
           +  +  R+  L   L+   +L +         L N+ S  + S      +         +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNC--------LTNVSSFSLVSVTIE-RVKDFSYNFGWQ 307

Query: 495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESK 554
           +L + +  F       L SLK    L  + N           +L  L FL+LS N    K
Sbjct: 308 HLELVNCKFGQFPTLKLKSLK---RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK 362

Query: 555 SLFVWPF 561
                  
Sbjct: 363 GCCSQSD 369

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 7e-17
 Identities = 66/391 (16%), Positives = 124/391 (31%), Gaps = 48/391 (12%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLR----SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYF 94
           LDL    I       +  L  +     S++L+ N     I        RL  LTL NN+ 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD 212

Query: 95  SGKIP-------TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG--- 144
           S  +          L     ++    +   L     + +  L    +      +L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 145 QLPASIGNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGMF--------- 194
            +      L+ +   ++    +      S     ++L   N    QF  +          
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 195 --------PPINNISSLEYIFIHRN-IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 245
                       ++ SLE++ + RN +              +L++  +S N +  ++  +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 246 LSNATNLQKLDINRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCT 304
                 L+ LD   +        + F  L+NL +L++   +         +        +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN------GLS 445

Query: 305 KLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
            LEVL +  N F       +      +T +     Q+    P    +L +L  L +  NQ
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 365 L------AVTILKSLQMLFLHENVLQGTIPS 389
           L          L SLQ ++LH N    + P 
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (305), Expect = 2e-30
 Identities = 82/407 (20%), Positives = 146/407 (35%), Gaps = 84/407 (20%)

Query: 149 SIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFI 208
              +L+      +    +      T+  + ++    V   + + +   I  +++LEY+ +
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNL 73

Query: 209 HRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI 268
           + N      PL    NL  L    I  N +T     +L N TNL++L +N +  S     
Sbjct: 74  NGNQITDISPLS---NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD--IS 126

Query: 269 NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS-LANL 327
               L  +  LNLG N+  +        ++ L+N T L  L +  ++   V P + L +L
Sbjct: 127 PLANLTKMYSLNLGANHNLS-------DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDL 179

Query: 328 STTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVL 383
                 ++   NQI    P  +A+L +L+      NQ+     V  +  L  L +  N +
Sbjct: 180 ----YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233

Query: 384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRII 443
               P  L NL+ LT                                             
Sbjct: 234 TDLSP--LANLSQLTW-------------------------------------------- 247

Query: 444 TLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSF 503
                L +  N +S      V  L  L  L++ SN  S +I      + L  L + +N  
Sbjct: 248 -----LEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQL 299

Query: 504 TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550
                  +  L ++T L LS+N+++   P  L +LS +   + +   
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 2e-28
 Identities = 75/338 (22%), Positives = 137/338 (40%), Gaps = 40/338 (11%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLG 282
           +L      ++   ++T  +  +     ++ KL +     +   SI     L NL +LNL 
Sbjct: 20  DLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLN 74

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS 342
            N +          I+ L+N  KL  L + +N+   +      NL T +  +    + IS
Sbjct: 75  GNQITD--------ISPLSNLVKLTNLYIGTNKITDISALQ--NL-TNLRELYLNEDNIS 123

Query: 343 GFIPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENVLQGTIPSFLGNLTML 397
              P  +ANL  + +L +  N     +     +  L  L + E+ ++   P  + NLT L
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179

Query: 398 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--LNLSDNL 455
               L  N +  +I P + +  +L   T   N+ +      +  +  ++ L  L + +N 
Sbjct: 180 YSLSLNYNQI-EDISP-LASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLKIGNNK 232

Query: 456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLK 515
           ++   P  +  L  L  L+I +N  S  I      T L+ L +  N  +    S L++L 
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
            +  L L+ N L     + +  L+ L+ L LS NH   
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (280), Expect = 4e-27
 Identities = 73/327 (22%), Positives = 137/327 (41%), Gaps = 30/327 (9%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L +  + +       +  L+ L  +NL  N      P  + NL +L NL +  N  +   
Sbjct: 49  LVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--D 102

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
            + L   +NL +   + + ++  SP  + NL K   LN+  NH      + + N++ L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNY 159

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
           + V  +++    P   +++ +L S ++  NQ   +  P+ +++SL Y   + N      P
Sbjct: 160 LTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP 216

Query: 219 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSW 278
           +    N+  L    I  N +T      L+N + L  L+I  N  S         L  L  
Sbjct: 217 VA---NMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGN 338
           LN+G N +          I++L N ++L  L L++N+ G      +  L T +T +    
Sbjct: 270 LNVGSNQISD--------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQ 320

Query: 339 NQISGFIPDGIANLVNLNALGVEFNQL 365
           N I+   P  +A+L  +++       +
Sbjct: 321 NHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 7e-27
 Identities = 72/376 (19%), Positives = 137/376 (36%), Gaps = 38/376 (10%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
             ++           P    +L       L     +  +        ++ K   +  K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
             S   I  L   + LN+  N +    P  + NL  L  + +  N++     S   ++ N
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 180 LISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
           L    +  +  S    P+ N++ +  + +  N ++ S    +  N+  L +  ++ + + 
Sbjct: 112 LRELYLNEDNISD-ISPLANLTKMYSLNLGAN-HNLSDLSPLS-NMTGLNYLTVTESKVK 168

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
                 ++N T+L  L +N N            L +L +     N +          IT 
Sbjct: 169 DV--TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--------ITP 216

Query: 300 LTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
           + N T+L  L + +N+   + P + L+ L+     +  G NQIS    + + +L  L  L
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTW----LEIGTNQISD--INAVKDLTKLKML 270

Query: 359 GVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS 414
            V  NQ+     +  L  L  LFL+ N L       +G LT LT   L  N  + +I P 
Sbjct: 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP- 328

Query: 415 IGNCKNLILLTTRKNK 430
           + +   +         
Sbjct: 329 LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 14/189 (7%)

Query: 52  PFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111
             + NL+ L S++L  N      P  + +L  L   T   N  +   P  ++  + L   
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 112 EASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP 171
           +  NNK+   SP  + NL +   L I  N +      ++ +L+ L+ +NV  N++     
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--I 280

Query: 172 STRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRF 230
           S  +++  L S  +  NQ        I  +++L  +F+ +N      PL    +L  +  
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA---SLSKMDS 337

Query: 231 FIISGNNLT 239
              +   + 
Sbjct: 338 ADFANQVIK 346

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 3e-30
 Identities = 95/515 (18%), Positives = 168/515 (32%), Gaps = 78/515 (15%)

Query: 49  FLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLS----- 103
           F++P   + +FL+     +++   E+P E  N+          + +    P         
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 104 --------RCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA 155
                         + E +N  L    P    +L   + L  + N L  +LP    +L +
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSLKS 115

Query: 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG 215
           L   N N   L    P        L    V  NQ     P + N S L+ I +  N    
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK- 166

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
            LP       P+L F     N L   L   L N   L  +  + N     +        +
Sbjct: 167 KLP----DLPPSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNN----SLKKLPDLPLS 216

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           L  +  G N L          +  L N   L  +  D+N     LP    +L      + 
Sbjct: 217 LESIVAGNNILEE--------LPELQNLPFLTTIYADNNLL-KTLPDLPPSLEA----LN 263

Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLT 395
             +N ++  +P+   +L  L+     F+ L+  +  +L  L    N ++ ++     +L 
Sbjct: 264 VRDNYLTD-LPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIR-SLCDLPPSLE 320

Query: 396 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 455
            L    +  N  L  +P      + LI         S     ++P +      L++  N 
Sbjct: 321 ELN---VSNN-KLIELPALPPRLERLIA--------SFNHLAEVPELPQNLKQLHVEYNP 368

Query: 456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLK 515
           L   FP     +++L       N    E+P      +L+ L ++ N      P    S+ 
Sbjct: 369 LR-EFPDIPESVEDL-----RMNSHLAEVPELPQ--NLKQLHVETNPLR-EFPDIPESV- 418

Query: 516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550
              +L ++   +        E    L      ++H
Sbjct: 419 --EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 7e-29
 Identities = 51/324 (15%), Positives = 98/324 (30%), Gaps = 28/324 (8%)

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
           GS      +++  + L    +             Q     +           N       
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR----------NRWHSAWR 51

Query: 300 LTNCTKLEVLVLDSNRFGAVLPFSLANL-STTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
             N    ++         A     L +        +   +  +    PD    L +L  +
Sbjct: 52  QANSNNPQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 359 GVEFNQL-----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
            ++   L      +     L+ L L  N L+  +P+ + +L  L +  +     L  +P 
Sbjct: 110 TIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 414 SIGNCKNLILLTTRKN----KPSGTMPRQLPRIIT-LSVL--LNLSDNLLSGHFPAEVGK 466
            + +           N    +   T  R LP  I  L  L  L + ++ LS      +  
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 467 LKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
           L  L  LD+         P   G    L+ L ++D S   ++P  +  L  + +LDL   
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 526 NLSGHIPQYLENLSFLSFLNLSYN 549
                +P  +  L     + +  +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 3e-25
 Identities = 48/389 (12%), Positives = 109/389 (28%), Gaps = 77/389 (19%)

Query: 149 SIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFI 208
              + S  + +   G+     +      +                     N ++ +    
Sbjct: 7   HHHHSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 209 HRNIYHGSLPLDIGV-NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVS 267
                  +    +     P      +    L     D     ++LQ + I+      ++ 
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 268 INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL 327
                   L  L L +N L    A+       + +  +L  L                ++
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPAS-------IASLNRLREL----------------SI 157

Query: 328 STTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTI 387
                       +++  +P+ +A+                  L +LQ L L    ++ ++
Sbjct: 158 R--------ACPELTE-LPEPLASTDASGEHQG---------LVNLQSLRLEWTGIR-SL 198

Query: 388 PSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSV 447
           P+ + NL  L    +  + L   + P+I +   L                          
Sbjct: 199 PASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL-------------------------E 232

Query: 448 LLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGS 506
            L+L       ++P   G    L  L +        +P  +   T LE L ++       
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 507 IPSTLSSLKSITELDLSRNNLSGHIPQYL 535
           +PS ++ L +   + +   +L   + Q+ 
Sbjct: 293 LPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 3e-23
 Identities = 41/242 (16%), Positives = 95/242 (39%), Gaps = 14/242 (5%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
             ++ L +     + P +   L  LQ++T+       ++P  + + + L     + N L 
Sbjct: 83  RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA---------LQEINVNGNRLGGRI 170
              PA I +L + + L+I       +LP  + +  A         LQ + +    +   +
Sbjct: 141 -ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 171 PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRF 230
           P++ ++++NL S  +  +  S + P I+++  LE + +       + P   G     L+ 
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKR 257

Query: 231 FIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRT 290
            I+   +   +L   +   T L+KLD+   +   ++      L     + +  +      
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 291 AN 292
            +
Sbjct: 318 QH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 5e-23
 Identities = 54/395 (13%), Positives = 103/395 (26%), Gaps = 85/395 (21%)

Query: 52  PFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111
               + S   ++    ++        +    R  N                +  +N    
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIE 61

Query: 112 EASNNKLAGESPAEIGNLLKFQL--LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR 169
             +   L   +   + +  +     L +    L  Q P     LS LQ + ++   L   
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-ME 118

Query: 170 IPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR 229
           +P T      L +  +  N                           +LP  I  +L  LR
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR------------------------ALPASIA-SLNRLR 153

Query: 230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTR 289
              I        L + L++                       GL NL  L L    +   
Sbjct: 154 ELSIRACPELTELPEPLASTDASG---------------EHQGLVNLQSLRLEWTGI--- 195

Query: 290 TANDLDFITL---LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIP 346
                   +L   + N   L+ L + ++   + L  ++ +L         G   +    P
Sbjct: 196 -------RSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRN-YP 246

Query: 347 DGIANLVNLNALGV-EFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN 405
                   L  L + + + L                    T+P  +  LT L +  L   
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL-------------------TLPLDIHRLTQLEKLDLRGC 287

Query: 406 DLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLP 440
             L  +P  I       ++    +     + +  P
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHL-QAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 42/222 (18%)

Query: 345 IPDGIANLVNLNALGVEFNQLAVTI--LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLL 402
             D ++               A       + Q+       L+      L + T   +  L
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVAL 86

Query: 403 EVND-LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 461
           E+    L   P       +L                           + +    L    P
Sbjct: 87  ELRSVPLPQFPDQAFRLSHL-------------------------QHMTIDAAGLM-ELP 120

Query: 462 AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS------- 513
             + +   L +L ++ N     +P ++     L  L ++       +P  L+S       
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 514 --LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
             L ++  L L    +   +P  + NL  L  L +  +   +
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 2/142 (1%)

Query: 50  LSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLV 109
            S     L  L+S+ L     R  +P  + NL  L++L + N+  S  +   +     L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 110 KFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR 169
           + +          P   G     + L + +      LP  I  L+ L+++++ G     R
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 170 IPSTRSHVRNLISFNVGLNQFS 191
           +PS  + +       V  +  +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 17/149 (11%), Positives = 35/149 (23%), Gaps = 11/149 (7%)

Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKL 467
           +G+      +      L  + +         L +        N   N    H        
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRW--HSAWRQANS 55

Query: 468 KNLVSLDISSNMFSGEIPTTLGC---TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524
            N      +           L          L ++        P     L  +  + +  
Sbjct: 56  NNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 525 NNLSGHIPQYLENLSFLSFLNLSYNHFES 553
             L   +P  ++  + L  L L+ N   +
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARNPLRA 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 6e-28
 Identities = 81/481 (16%), Positives = 176/481 (36%), Gaps = 36/481 (7%)

Query: 97  KIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL 156
            IP+ L+  + +   + S NK+      ++      Q+L +  + +      +  +L +L
Sbjct: 19  SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRNIYH 214
           + ++++ N L     S    + +L   N+  N +  +       N+++L+ + I      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 215 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ 274
             +       L +L    I   +L      SL +  ++  L ++ +  +  + I    L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGI 334
           ++ +L L   NL     + L    + +   KL                 L      ++ +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 335 AFGNNQISGF------IPDGIANLVNLNALGVEFNQL-----------AVTILKSLQMLF 377
            F +  ++G         D ++ L  +  + +    +             ++L+ ++ + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPS---IGNCKNLILLTTRKNKPSGT 434
           +  + +     SF  +L  L    L  N ++     +    G   +L  L   +N    +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-S 375

Query: 435 MPRQLPRIITLSVL--LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTS 492
           M +    ++TL  L  L++S N      P      + +  L++SS      + T +   +
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-PQT 432

Query: 493 LEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           LE L + +N+   S    L  L    EL +SRN L   +P        L  + +S N  +
Sbjct: 433 LEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK 486

Query: 553 S 553
           S
Sbjct: 487 S 487

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 57/348 (16%), Positives = 121/348 (34%), Gaps = 22/348 (6%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
           S+P  +      ++   +S N +T      L    NLQ L +  +  +      F  L +
Sbjct: 19  SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           L  L+L  N+L + +++           + L+ L L  N +  +   SL    T +  + 
Sbjct: 76  LEHLDLSDNHLSSLSSS------WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 336 FGNNQISGFIPDG-IANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIP 388
            GN +    I     A L +LN L ++   L      ++  ++ +  L LH +     + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 389 SFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL 448
            F   L+ +    L   +L       +   +    +     + S         ++ L   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIP 508
           +     +           L  L   + S +    E+   +   ++  L +        + 
Sbjct: 250 ILELSEVEFDDCT-----LNGLGDFNPSESDVVSELGK-VETVTIRRLHIPQFYLFYDLS 303

Query: 509 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556
           +  S L+ +  + +  + +      + ++L  L FL+LS N    + L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 62/431 (14%), Positives = 131/431 (30%), Gaps = 73/431 (16%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115
            L+ L  + +   S R      + ++  + +LTL  +  +  +       S++   E  +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS 175
             LA    + +        +             S   L  L    +  + +         
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV----EFDDC 261

Query: 176 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235
            +  L  FN   +        +  + ++  + I +  Y       +   L  ++   +  
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQF-YLFYDLSTVYSLLEKVKRITVEN 319

Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN---FGGLQNLSWLNLGKNNLGTRTAN 292
           + +         +  +L+ LD++ NL   +   N    G   +L  L L +N+L +    
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 293 DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL 352
               +TL      L  L +  N F                            +PD     
Sbjct: 380 GEILLTL----KNLTSLDISRNTF--------------------------HPMPDSCQWP 409

Query: 353 VNLNALGVEFNQLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLG 409
             +  L +    + V    I ++L++L +  N L  +   FL  L  L         +  
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL--------YISR 460

Query: 410 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 469
           N          L  L      P  ++   L       +++ +S N L         +L +
Sbjct: 461 N---------KLKTL------PDASLFPVL-------LVMKISRNQLKSVPDGIFDRLTS 498

Query: 470 LVSLDISSNMF 480
           L  + + +N +
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 33/251 (13%)

Query: 38  GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK 97
            L +    +   LS     L  ++ I + N+           +L  L+ L L+ N    +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR--GQLPASIGNLSA 155
              N                      A  G     Q L +++NHLR   +    +  L  
Sbjct: 350 YLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG 215
           L  ++++ N     +P +      +   N+       +        +LE + +  N    
Sbjct: 389 LTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKT--CIPQTLEVLDVSNNNLD- 444

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
                  + LP L+   IS N L  +L D+ S    L  + I+RN         F  L +
Sbjct: 445 ----SFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 276 LSWLNLGKNNL 286
           L  + L  N  
Sbjct: 499 LQKIWLHTNPW 509

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 8e-25
 Identities = 62/335 (18%), Positives = 110/335 (32%), Gaps = 43/335 (12%)

Query: 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285
              R   +  N +    QD  ++  +L++L++N N+ S      F  L NL  L L  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
           L            + T  + L  L +  N+   +L +   +L   +  +  G+N +    
Sbjct: 92  LKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYIS 144

Query: 346 PDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQ 399
               + L +L  L +E   L      A++ L  L +L L    +          L  L  
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 400 RLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH 459
             +     L  + P+     NL                           L+++   L+  
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNL-------------------------TSLSITHCNLT-A 238

Query: 460 FPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKS 516
            P      L  L  L++S N  S  I  ++      L+ + +         P     L  
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 517 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
           +  L++S N L+        ++  L  L L  N  
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 68/333 (20%), Positives = 111/333 (33%), Gaps = 37/333 (11%)

Query: 58  SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117
           +  R ++L  N  +     E  +   L+ L L  N  S   P   +   NL      +N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHV 177
           L          L     L+I+EN +   L     +L  L+ + V  N L   I       
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH----- 145

Query: 178 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN 237
                       FSG+       +SLE + + +     S+P +   +L  L    +   N
Sbjct: 146 ----------RAFSGL-------NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 238 LTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFI 297
           +      S      L+ L+I+   +   ++ N     NL+ L++   NL           
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL----- 242

Query: 298 TLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNA 357
             + +   L  L L  N    +    L  L   +  I     Q++   P     L  L  
Sbjct: 243 -AVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 358 LGVEFNQL------AVTILKSLQMLFLHENVLQ 384
           L V  NQL          + +L+ L L  N L 
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 72/356 (20%), Positives = 118/356 (33%), Gaps = 64/356 (17%)

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192
           +LL++ +N ++        +   L+E+ +N N +    P   +++ NL +  +  N+   
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93

Query: 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNL 252
                                   +PL +   L NL    IS N +   L     +  NL
Sbjct: 94  -----------------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 253 QKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
           + L++  N         F GL +L  L L K NL +           L++   L VL L 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGLIVLRLR 184

Query: 313 SNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------A 366
                A+  +S   L             +   +       +NL +L +    L      A
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 367 VTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT 426
           V  L  L+ L L  N +     S L  L  L +  L    L   + P     + L  L  
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEP--YAFRGLNYLRV 300

Query: 427 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFS 481
                                 LN+S N L+      V   + NL +L + SN  +
Sbjct: 301 ----------------------LNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 56/281 (19%), Positives = 98/281 (34%), Gaps = 12/281 (4%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGK 97
           L+L    +         NL  LR++ L +N  +  IP  V   L  L  L ++ N     
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           +        NL   E  +N L   S      L   + L + + +L      ++ +L  L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRN-IYHG 215
            + +    +      +   +  L    +    +     P      +L  + I    +   
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--T 237

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
           ++P     +L  LRF  +S N ++      L     LQ++ +     +      F GL  
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316
           L  LN+  N L T   +      +  +   LE L+LDSN  
Sbjct: 298 LRVLNVSGNQLTTLEES------VFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 24/244 (9%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFL 378
             + T    +  G N+I     D  A+  +L  L +  N +      A   L +L+ L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNK----PSG 433
             N L+         L+ LT+  +  N +   +   +  +  NL  L    N        
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 434 TMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GC 490
                L  +  L     L    L+   P E    L  L+ L +     +  I        
Sbjct: 147 AF-SGLNSLEQL----TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRL 199

Query: 491 TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYN 549
             L+ L +    +  ++        ++T L ++  NL+  +P   + +L +L FLNLSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 550 HFES 553
              +
Sbjct: 259 PIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 2/154 (1%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L LRH +I          L  L+ + +++  +   +         L +L++T+   +  +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AV 239

Query: 99  PTN-LSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           P   +     L     S N ++    + +  LL+ Q + +    L    P +   L+ L+
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS 191
            +NV+GN+L     S    V NL +  +  N  +
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 3e-23
 Identities = 70/337 (20%), Positives = 120/337 (35%), Gaps = 69/337 (20%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
           +LP  +     ++   +I  NNLT SL         L+ L+++ N  +  + +   GL  
Sbjct: 54  TLPDCLP---AHITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLE 105

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           LS  +    +L            L +    L  L +  N+  + LP     L      ++
Sbjct: 106 LSIFSNPLTHL----------PALPSG---LCKLWIFGNQLTS-LPVLPPGLQE----LS 147

Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLT 395
             +NQ++  +P   + L  L A   +   L +     LQ L + +N L  ++P+    L 
Sbjct: 148 VSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLP-SGLQELSVSDNQLA-SLPTLPSELY 204

Query: 396 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 455
            L       N+ L ++P      K L                             +S N 
Sbjct: 205 KLWAY----NNRLTSLPALPSGLKEL----------------------------IVSGNR 232

Query: 456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLK 515
           L+   P    +LK L    +S N  +  +P       L  L +  N  T  +P +L  L 
Sbjct: 233 LT-SLPVLPSELKEL---MVSGNRLT-SLPMLPS--GLLSLSVYRNQLT-RLPESLIHLS 284

Query: 516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           S T ++L  N LS    Q L  ++     +     F+
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 6e-22
 Identities = 62/298 (20%), Positives = 103/298 (34%), Gaps = 55/298 (18%)

Query: 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMT 332
               + LN+G++ L T                 +  LV+  N     LP     L T   
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---------AHITTLVIPDNNL-TSLPALPPELRT--- 85

Query: 333 GIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLG 392
            +    NQ++  +P     L+ L+        L   +   L  L++  N L  ++P    
Sbjct: 86  -LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLT-SLPVLPP 141

Query: 393 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 452
            L  L+   +  N L  ++P        L     +           LP + +    L++S
Sbjct: 142 GLQELS---VSDNQL-ASLPALPSELCKLWAYNNQLT--------SLPMLPSGLQELSVS 189

Query: 453 DNLLSGHFPAEVGKLK-----------------NLVSLDISSNMFSGEIPTTLGCTSLEY 495
           DN L+   P    +L                   L  L +S N  +  +P       L+ 
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS--ELKE 245

Query: 496 LCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
           L +  N  T S+P   S L     L + RN L+  +P+ L +LS  + +NL  N    
Sbjct: 246 LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 69/394 (17%), Positives = 121/394 (30%), Gaps = 60/394 (15%)

Query: 84  LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR 143
              L +  +  +  +P  L   +++      +N L    PA    L   + L ++ N L 
Sbjct: 42  NAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT 94

Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 203
             LP     L  L   +     L             L    +  NQ +   P       L
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTS-LP--VLPPGL 143

Query: 204 EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263
           + + +  N    SLP      L  L       N LT SL       + LQ+L ++ N  +
Sbjct: 144 QELSVSDN-QLASLPALPS-ELCKLW---AYNNQLT-SLPMLP---SGLQELSVSDNQLA 194

Query: 264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
             +      L  L   N   N L           +L    + L+ L++  NR  + LP  
Sbjct: 195 -SLPTLPSELYKLWAYN---NRL----------TSLPALPSGLKELIVSGNRLTS-LPVL 239

Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL-----AVTILKSLQMLFL 378
            + L      +    N+++  +P   + L++L+   V  NQL     ++  L S   + L
Sbjct: 240 PSEL----KELMVSGNRLTS-LPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNL 291

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
             N L       L  +T        +         +    + L L           +P +
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD-----WLVPAR 346

Query: 439 LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
                             +  F   + +L    +
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETEN 380

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 7e-19
 Identities = 76/371 (20%), Positives = 118/371 (31%), Gaps = 48/371 (12%)

Query: 104 RCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNG 163
             +         + L    P  +   +    L I +N+L   LPA    L   + + V+G
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAHI--TTLVIPDNNLT-SLPALPPEL---RTLEVSG 90

Query: 164 NRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGV 223
           N+L   +P     +  L  F+  L             S L  ++I  N    SLP    V
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP------ALPSGLCKLWIFGNQLT-SLP----V 138

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
             P L+   +S N L  SL    S    L KL    N  +  + +   GLQ    L++  
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQ---ELSVSD 190

Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG 343
           N L           +L T  ++L  L   +NR    LP   + L      +    N+++ 
Sbjct: 191 NQL----------ASLPTLPSELYKLWAYNNRL-TSLPALPSGLKE----LIVSGNRLTS 235

Query: 344 FIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLE 403
            +P   + L  L   G     L +     L  L ++ N L   +P  L +L+  T   LE
Sbjct: 236 -LPVLPSELKELMVSGNRLTSLPMLP-SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 404 VNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE 463
            N L                  +             PR      L   + + L      E
Sbjct: 293 GNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA--LHLAAADWLVPAREGE 349

Query: 464 VGKLKNLVSLD 474
                      
Sbjct: 350 PAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 68/344 (19%), Positives = 119/344 (34%), Gaps = 45/344 (13%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L +   +    L+        LR++ ++ N     +P     L  L   +    +    +
Sbjct: 66  LVIPDNN----LTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-AL 119

Query: 99  PTNLSR--------------CSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG 144
           P+ L +                 L +   S+N+LA   PA    L     L    N L  
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT- 174

Query: 145 QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLE 204
            LP        LQE++V+ N+L   +P+  S +  L ++N  L             S L+
Sbjct: 175 SLPMLPSG---LQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLP------ALPSGLK 224

Query: 205 YIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSG 264
            + +  N    SLP+        L+  ++SGN LT SL       + L  L + RN  + 
Sbjct: 225 ELIVSGN-RLTSLPVLPS----ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT- 274

Query: 265 KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSL 324
           ++  +   L + + +NL  N L  RT   L  IT     +   +    +         +L
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT 368
              +      A                  N +A  +  ++L+ T
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (251), Expect = 4e-23
 Identities = 60/345 (17%), Positives = 117/345 (33%), Gaps = 33/345 (9%)

Query: 223 VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLG 282
           + L N +      + +       L +   ++ L++N        +  F     +  L +G
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS 342
            N +     +      +  N   L VLVL+ N   ++      N    +T ++  NN + 
Sbjct: 102 FNAIRYLPPH------VFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLE 154

Query: 343 GFIPDGIANLVNLNALGVEFNQLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQ 399
               D      +L  L +  N+L     +++ SL    +  N+L     S L     + +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEE 209

Query: 400 RLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--LNLSDNLLS 457
                N +   +   +     L +L  + N  +         ++    L  ++LS N L 
Sbjct: 210 LDASHNSI-NVVRGPV--NVELTILKLQHNNLT-----DTAWLLNYPGLVEVDLSYNELE 261

Query: 458 GHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLK 515
                    K++ L  L IS+N     +        +L+ L +  N     +        
Sbjct: 262 -KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWP 560
            +  L L  N++   +   L     L  L LS+N ++  SL    
Sbjct: 319 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 360

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.0 bits (234), Expect = 6e-21
 Identities = 60/331 (18%), Positives = 121/331 (36%), Gaps = 22/331 (6%)

Query: 199 NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDIN 258
            +++ + +    +     LP  +  +   +    ++   +      + + A  +QKL + 
Sbjct: 43  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 259 RNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318
            N         F  +  L+ L L +N+L +          +  N  KL  L + +N    
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG------IFHNTPKLTTLSMSNNNLER 155

Query: 319 VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL-AVTILKSLQMLF 377
           +   +     T++  +   +N+++      I +L + N   V +N L  + I  +++ L 
Sbjct: 156 IEDDTFQAT-TSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYNLLSTLAIPIAVEELD 211

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPR 437
              N +          LT+L    L+ N+L       + N   L+ +    N+    M  
Sbjct: 212 ASHNSINVVRGPVNVELTILK---LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 438 QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLC 497
              ++  L  L  +S+N L          +  L  LD+S N              LE L 
Sbjct: 267 PFVKMQRLERL-YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 498 MQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528
           +  NS   ++   LS+  ++  L LS N+  
Sbjct: 325 LDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 53/350 (15%), Positives = 117/350 (33%), Gaps = 27/350 (7%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           + +  Q+   +       L+  + +   N++ R      + +  +++ L L +       
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSALQ 157
               +    + K     N +    P    N+    +L +  N L   LP  I  N   L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSL 217
            ++++ N L      T     +L +  +  N+ + +   ++ I SL +  +  N      
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN------ 196

Query: 218 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS 277
            L        +     S N++   ++  ++    L  L +  N  +   +        L 
Sbjct: 197 LLSTLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLV 251

Query: 278 WLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
            ++L  N L     +            +LE L + +NR  A L      +  T+  +   
Sbjct: 252 EVDLSYNELEKIMYH------PFVKMQRLERLYISNNRLVA-LNLYGQPI-PTLKVLDLS 303

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA---VTILKSLQMLFLHENVLQ 384
           +N +   +         L  L ++ N +    ++   +L+ L L  N   
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 57/363 (15%), Positives = 114/363 (31%), Gaps = 52/363 (14%)

Query: 74  IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133
           I   +       ++ +                +N       N+ +     A + +  + +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193
           LLN+ +  +      +      +Q++ +  N +    P    +V  L    +  N  S  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-- 130

Query: 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ 253
                                 SLP  I  N P L    +S NNL     D+    T+LQ
Sbjct: 131 ----------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 254 KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDS 313
            L ++ N  +    ++   + +L   N+  N            ++ L     +E L    
Sbjct: 169 NLQLSSNRLT---HVDLSLIPSLFHANVSYNL-----------LSTLAIPIAVEELDASH 214

Query: 314 NRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV------ 367
           N    V       L+     +   +N ++      + N   L  + + +N+L        
Sbjct: 215 NSINVVRGPVNVELTI----LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 368 TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTR 427
             ++ L+ L++  N L   +  +   +  L    L  N LL ++  +      L  L   
Sbjct: 269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 428 KNK 430
            N 
Sbjct: 327 HNS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.5 bits (194), Expect = 8e-16
 Identities = 52/294 (17%), Positives = 96/294 (32%), Gaps = 26/294 (8%)

Query: 267 SINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLAN 326
            I+     +  + ++  +          + ITL       +++   ++    +    L +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL----NNQKIVTFKNSTMRKLPAALLDS 67

Query: 327 LSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV------TILKSLQMLFLHE 380
               +  +   + QI        A    +  L + FN +          +  L +L L  
Sbjct: 68  F-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 381 NVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTMPRQL 439
           N L         N   LT   +  N  L  I         +L  L    N+ +      +
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQ 499
           P +       N+S NLLS      +     +  LD S N  +  +   +    L  L +Q
Sbjct: 186 PSLFHA----NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV-NVELTILKLQ 234

Query: 500 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
            N+ T    + L +   + E+DLS N L   +      +  L  L +S N   +
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.5 bits (248), Expect = 2e-22
 Identities = 68/485 (14%), Positives = 137/485 (28%), Gaps = 64/485 (13%)

Query: 74  IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133
           I     N  R +   +T++     + +      N+ + + S N L+  S A++    K +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193
           LLN++ N L       + +LS L+ +++N N +            ++ + +   N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ 253
                                  +    G    N+    ++ N +T          + +Q
Sbjct: 113 ----------------------RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 254 KLDINRNLFSG-KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
            LD+  N       +        L  LNL  N +          +       KL+ L L 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLS 199

Query: 313 SNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKS 372
           SN+  A +     +    +T I+  NN++   I   +    NL    +  N      L+ 
Sbjct: 200 SNKL-AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 432
                     +       L         +  +             C++L         P+
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY------CCEDL---------PA 301

Query: 433 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-GCT 491
               R +        LL+   +        E         +D     +   I        
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQ 360

Query: 492 SLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
           +   L  +  +    + +   +   +             +    E  S L  L      +
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRY 419

Query: 552 ESKSL 556
           E   +
Sbjct: 420 EEMYV 424

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 7e-20
 Identities = 50/321 (15%), Positives = 90/321 (28%), Gaps = 66/321 (20%)

Query: 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
           ++ +   N    +   +  +     ++       N+  L+L  N L   +A        L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
              TKLE+L L SN     L                              +L  L  L +
Sbjct: 55  APFTKLELLNLSSNVLYETLDLE---------------------------SLSTLRTLDL 87

Query: 361 EFNQL-AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCK 419
             N +  + +  S++ L    N +     S       +    L  N +        G   
Sbjct: 88  NNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRS 144

Query: 420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSG-HFPAEVGKLKNLVSLDISSN 478
            +                           L+L  N +   +F         L  L++  N
Sbjct: 145 RV-------------------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 479 MFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 538
               ++   +    L+ L +  N     +     S   +T + L  N L   I + L   
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 539 SFLSFLNLSYNHFESKSLFVW 559
             L   +L  N F   +L  +
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 51/453 (11%), Positives = 129/453 (28%), Gaps = 38/453 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
             +   S+   L+    +   ++ ++L+ N        ++    +L+ L L++N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
             +L   S L   + +NN +      E+      + L+ A N++  ++  S       + 
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--GQGKKN 124

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRN-IYHG 215
           I +  N++             +   ++ LN+   +       +  +LE++ +  N IY  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
              +   V    L+   +S N L   +     +A  +  + +  N     +       QN
Sbjct: 184 ---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           L   +L  N     T  D       +   +++ +   + +           + T      
Sbjct: 239 LEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH--- 290

Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILK----------SLQMLFLHENVLQG 385
           +G              L+ L            +  +            + +   +   + 
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 386 TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITL 445
            I               +   L   +         L     +       +         L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSPL 409

Query: 446 SVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSN 478
            +L  +       +   +  +   +   D+  +
Sbjct: 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (249), Expect = 3e-22
 Identities = 66/391 (16%), Positives = 128/391 (32%), Gaps = 32/391 (8%)

Query: 177 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDI-GVNLPNLRFFIISG 235
           V     +NV   Q        N      +  +H ++    +      + L N +      
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD 295
           + +       L +   ++ L++N        +  F     +  L +G N +     +   
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH--- 117

Query: 296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNL 355
              +  N   L VLVL+ N   ++      N    +T ++  NN +     D      +L
Sbjct: 118 ---VFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 356 NALGVEFNQLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
             L +  N+L     +++ SL    +  N+L     S L     + +     N +   + 
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVR 227

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--LNLSDNLLSGHFPAEV-GKLKN 469
             +     L +L  + N  +         ++    L  ++LS N L          K++ 
Sbjct: 228 GPV--NVELTILKLQHNNLT-----DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR 279

Query: 470 LVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529
           L  L IS+N             +L+ L +  N     +         +  L L  N++  
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 530 HIPQYLENLSFLSFLNLSYNHFESKSLFVWP 560
            +   L     L  L LS+N ++  SL    
Sbjct: 338 TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 72/527 (13%), Positives = 156/527 (29%), Gaps = 42/527 (7%)

Query: 38  GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK 97
            + +  Q+   +       L+  + +   N++ R      + +  +++ L L +      
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSAL 156
                +    + K     N +    P    N+    +L +  N L   LP  I  N   L
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149

Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS 216
             ++++ N L      T     +L +  +  N+ + +   ++ I SL +  +  N     
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN----- 202

Query: 217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQN 275
             L        +     S N++   ++  ++    L  L +  N  +             
Sbjct: 203 -LLSTLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLT---DTAWLLNYPG 255

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           L  ++L  N L     +            +LE L + +NR  A L      +  T+  + 
Sbjct: 256 LVEVDLSYNELEKIMYH------PFVKMQRLERLYISNNRLVA-LNLYGQPI-PTLKVLD 307

Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLA---VTILKSLQMLFLHENVLQGTIPSFLG 392
             +N +   +         L  L ++ N +    ++   +L+ L L  N           
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN------ 360

Query: 393 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 452
           +L  L + +      + +          L      K      + R L  I   SV+  + 
Sbjct: 361 SLRALFRNVARPA--VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQ 418

Query: 453 DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLS 512
                      +  +++L            +    L     E                + 
Sbjct: 419 RAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL----RAEVQQLTNEQIQ 474

Query: 513 SLKSITELDLSRN-NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV 558
             + +  L    + NL  +             LN  + H + +  F 
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFK 521

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 65/442 (14%), Positives = 122/442 (27%), Gaps = 74/442 (16%)

Query: 112 EASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP 171
                       + +     F  ++I               L+  + +    + +  ++P
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLP 67

Query: 172 STRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF 231
           +                              +E + ++       +          ++  
Sbjct: 68  A---------------ALLDSF-------RQVELLNLNDLQIE-EIDTYAFAYAHTIQKL 104

Query: 232 IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTA 291
            +  N +         N   L  L + RN  S      F     L+ L++  NNL     
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
           +           T L+ L L SNR   V    + +L           N +S      +A 
Sbjct: 165 D------TFQATTSLQNLQLSSNRLTHVDLSLIPSLFH----ANVSYNLLS-----TLAI 209

Query: 352 LVNLNALGVEFNQLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL 408
            + +  L    N + V    +   L +L L  N L         N   L +  L  N+L 
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWL-LNYPGLVEVDLSYNELE 267

Query: 409 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK 468
             +       + L                           L +S+N L          + 
Sbjct: 268 KIMYHPFVKMQRL-------------------------ERLYISNNRLV-ALNLYGQPIP 301

Query: 469 NLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528
            L  LD+S N              LE L +  NS   ++   LS+  ++  L LS N+  
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

Query: 529 G-HIPQYLENLSFLSFLNLSYN 549
              +     N++  +  +   +
Sbjct: 359 CNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 58/365 (15%), Positives = 114/365 (31%), Gaps = 52/365 (14%)

Query: 72  AEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLK 131
             I   +       ++ +                +N       N+ +     A + +  +
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 132 FQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS 191
            +LLN+ +  +      +      +Q++ +  N +    P    +V  L    +  N  S
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 192 GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATN 251
                                   SLP  I  N P L    +S NNL     D+    T+
Sbjct: 137 ------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVL 311
           LQ L ++ N  +    ++   + +L   N+  N L           + L     +E L  
Sbjct: 173 LQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLL-----------STLAIPIAVEELDA 218

Query: 312 DSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------ 365
             N    V       L+     +   +N ++      + N   L  + + +N+L      
Sbjct: 219 SHNSINVVRGPVNVELTI----LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 366 AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT 425
               ++ L+ L++  N L   +  +   +  L    L  N LL ++  +      L  L 
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 426 TRKNK 430
              N 
Sbjct: 331 LDHNS 335

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 49/324 (15%), Positives = 94/324 (29%), Gaps = 72/324 (22%)

Query: 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
           ++ +   N    +   +  +     ++       N+  L+L  N L   +A        L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 301 TNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359
              TKLE+L L SN     L    L+ L T    +   NN +       +    ++  L 
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTLRT----LDLNNNYVQE-----LLVGPSIETLH 105

Query: 360 VEFNQLA---VTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG 416
              N ++    +  +  + ++L  N +        G  + +                   
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY----------------- 148

Query: 417 NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSG-HFPAEVGKLKNLVSLDI 475
                                           L+L  N +   +F         L  L++
Sbjct: 149 --------------------------------LDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 476 SSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL 535
             N    ++   +    L+ L +  N     +     S   +T + L  N L   I + L
Sbjct: 177 QYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 536 ENLSFLSFLNLSYNHFESKSLFVW 559
                L   +L  N F   +L  +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 8e-22
 Identities = 49/369 (13%), Positives = 102/369 (27%), Gaps = 71/369 (19%)

Query: 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLD 256
             N +  +   +  +         +  +  N++   +SGN L+      L+  T L+ L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 257 INRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316
           ++ N+     +++   L  L  L+L  N            +  L     +E L   +N  
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNY-----------VQELLVGPSIETLHAANNNI 111

Query: 317 GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA-------VTI 369
             V              I   NN+I+            +  L ++ N++           
Sbjct: 112 SRVSCSRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 370 LKSLQMLFLHENVLQGTIPS--FLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLIL 423
             +L+ L L  N +   +        L  L        DL  N    + P   +   +  
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVVFAKLKTL--------DLSSNKLAFMGPEFQSAAGV-- 216

Query: 424 LTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGE 483
                                    ++L +N L       +   +NL   D+  N F   
Sbjct: 217 -----------------------TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 484 IPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF 543
                   +     +   +    +        ++  L          +P           
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLP----APFADRL 307

Query: 544 LNLSYNHFE 552
           + L ++H  
Sbjct: 308 IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 46/331 (13%)

Query: 74  IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133
           I     N  R +   +T++     + +      N+ + + S N L+  S A++    K +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193
           LLN++ N L       + +LS L+ +++N N +            ++ + +   N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ 253
                                  +    G    N+    ++ N +T          + +Q
Sbjct: 113 ----------------------RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 254 KLDINRN-LFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
            LD+  N + +   +        L  LNL  N +          +       KL+ L L 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLS 199

Query: 313 SNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKS 372
           SN+  A +     +    +T I+  NN++   I   +    NL    +  N      L+ 
Sbjct: 200 SNKL-AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLE 403
                     +       L         +  
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 41/292 (14%), Positives = 99/292 (33%), Gaps = 24/292 (8%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
             +   S+   L+    +   ++ ++L+ N        ++    +L+ L L++N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
             +L   S L   + +NN +      E+      + L+ A N++  ++  S       + 
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--GQGKKN 124

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRN-IYHG 215
           I +  N++             +   ++ LN+   +       +  +LE++ +  N IY  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
              +   V    L+   +S N L   +     +A  +  + +  N     +       QN
Sbjct: 184 ---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL 327
           L   +L  N     T  D       +   +++ +   + +           +
Sbjct: 239 LEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 23/206 (11%), Positives = 65/206 (31%), Gaps = 7/206 (3%)

Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           +     + +++ ANN+    +    G     +N+ L NN  +     +    S +   + 
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 114 SNNKLAG-ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPS 172
             N++          +    + LN+  N +   +   +   + L+ ++++ N+L   +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGP 208

Query: 173 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI 232
                  +   ++  N+   +   +    +LE+  +  N +H     D       ++   
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDIN 258
                      +       L      
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAY 294

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 87/504 (17%), Positives = 167/504 (33%), Gaps = 58/504 (11%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
              +N++ N        ++ +L +L+ L +++N       +       L   + S+NKL 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 120 GESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR 178
             S       +  + L+++ N      +    GN+S L+ + ++   L        +H+ 
Sbjct: 83  KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 179 NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
                 V    +     P      L+                  V   N  F  I   ++
Sbjct: 140 ISKVLLVLGETYGEKEDP----EGLQDFNTESLHI---------VFPTNKEFHFILDVSV 186

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
                  LSN   + + +      S    +      N    NL  NN+ T T N    I 
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQ----TNPKLSNLTLNNIET-TWNSFIRIL 241

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT----MTGIAFGNNQISGFIPDGIANLVN 354
            L   T +    + + +    L F   + S T    ++     ++              N
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 355 LNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL 408
           +N      +   +        +     L    N+L  T+    G+LT L   +L++N  L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QL 360

Query: 409 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKL 467
             +         +  L                        L++S N +S           
Sbjct: 361 KELSKIAEMTTQMKSLQQ----------------------LDISQNSVSYDEKKGDCSWT 398

Query: 468 KNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNL 527
           K+L+SL++SSN+ +  I   L    ++ L +  N    SIP  +  L+++ EL+++ N L
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

Query: 528 SGHIPQYLENLSFLSFLNLSYNHF 551
                   + L+ L  + L  N +
Sbjct: 457 KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 75/469 (15%), Positives = 156/469 (33%), Gaps = 59/469 (12%)

Query: 97  KIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL 156
            +P +LS          S N ++    ++I +L K ++L I+ N ++    +       L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRNIYH 214
           + ++++ N+L   I        NL   ++  N F  +       N+S L+++ +    + 
Sbjct: 72  EYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HL 127

Query: 215 GSLPLDIGVNLPNLRFFIISGNNLTGSLQ-DSLSN--ATNLQKLDINRNLFSGKVSINFG 271
               +    +L   +  ++ G         + L +    +L  +      F   + ++  
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL--ST 329
            + NL   N+       + +  L  +  L    KL  L L++          +  L   T
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPS 389
           T+   +  N ++ G +     +    +             LK+L +  +  +V       
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTS-------------LKALSIHQVVSDVFGFPQSY 294

Query: 390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 449
                + +  +   V+                                         + L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF-------------------------LHL 329

Query: 450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGC----TSLEYLCMQDNSFTG 505
           + S+NLL+       G L  L +L +  N    E+           SL+ L +  NS + 
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 506 SIPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
                  S  KS+  L++S N L+  I + L     +  L+L  N  +S
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKS 435

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 42/320 (13%), Positives = 93/320 (29%), Gaps = 30/320 (9%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
                L+I++N  S   + +   L  L  L +  N +     +   F        +LE L
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF------NQELEYL 74

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL--- 365
            L  N+   +      NL      +    N            N+  L  LG+    L   
Sbjct: 75  DLSHNKLVKISCHPTVNL----KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 366 AVTILKSLQMLFLHENVLQGTIPSF-LGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILL 424
           +V  +  L +  +   + +          L       L +          I +     + 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 425 TTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEI 484
                         +  ++  +        L       ++  L  L +++ + N F   I
Sbjct: 191 NLE--------LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL-TLNNIETTWNSFI-RI 240

Query: 485 PTTLGCTSLEYLCMQDNSFTGSIPS-----TLSSLKSITELDLSRNNLSGHIPQYLENLS 539
              +  T++ Y  + +    G +       + +SLK+++   +  +          E  S
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 540 FLSFLNLSYNHFESKSLFVW 559
            ++  N + +      +   
Sbjct: 301 NMNIKNFTVSGTRMVHMLCP 320

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 57/391 (14%), Positives = 114/391 (29%), Gaps = 53/391 (13%)

Query: 55  GNLSFLRSINLANNSFRA-EIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
                L+ ++L+ N+F A  I  E GN+ +L+ L L+  +        ++  +       
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 114 SNNKLAGESPAE---IGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI 170
                  +   E     N     ++          L  S+  ++ L+  N+       + 
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 171 PSTRSHVRNLISFNVGLN----------QFSGMFPPINNISSLEYIFIHRNIYHGSLP-- 218
               S +  L +     N                  +   +++ Y  I      G L   
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 219 --------------LDIGVN------------LPNLRFFIISGNNLTGSLQDSLSNATNL 252
                           +  +              N+     + +          S  +  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 253 QKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
             LD + NL +  V  N G L  L  L L  N L   +        +      L+ L + 
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM----KSLQQLDIS 382

Query: 313 SNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL-----AV 367
            N           + + ++  +   +N ++  I   +     +  L +  N++      V
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQV 440

Query: 368 TILKSLQMLFLHENVLQGTIPSFLGNLTMLT 398
             L++LQ L +  N L+         LT L 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 59/361 (16%), Positives = 112/361 (31%), Gaps = 33/361 (9%)

Query: 199 NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDIN 258
            +  L+++ + +      +  +    L +L    +  N        + +   NL+ L + 
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 259 RN-LFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316
           +  L    +S N F  L +L  L L  NN+       +   +   N  +  VL L  N+ 
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----IQPASFFLNMRRFHVLDLTFNKV 166

Query: 317 GAVLPFSLANL-STTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQM 375
            ++    L N      T +   +  +       +      N               S+  
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK----------NTSITT 216

Query: 376 LFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTM 435
           L L  N  + ++     +    T+    +     N+  S G+                + 
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 436 PRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTS 492
            +            +LS + +       V     +L  L ++ N  + +I      G T 
Sbjct: 277 VKT----------CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 493 LEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           L  L +  N           +L  +  LDLS N++     Q    L  L  L L  N  +
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

Query: 553 S 553
           S
Sbjct: 385 S 385

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.4 bits (196), Expect = 6e-16
 Identities = 77/414 (18%), Positives = 132/414 (31%), Gaps = 58/414 (14%)

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPS-TRSHVRNLISFNVGLNQFS 191
             ++++ N +      S   L  LQ + V     G  I + T   + +LI   +  NQF 
Sbjct: 33  NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 192 ----GMFPPINNISSLEYIFIHRN-IYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDS 245
               G F   N +++LE + + +  +    L  +    L +L   ++  NN+        
Sbjct: 93  QLETGAF---NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 246 LSNATNLQKLDINRNLFSGKVSINFGGLQ--NLSWLNLGKNNLGTRTANDLDFIT--LLT 301
             N      LD+  N        +    Q  + + L L    L       L +       
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 302 NCTKLEVLVLDSNRFGAVLPFS----LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNA 357
             T +  L L  N F   +       +A        ++   N  S F      +  N   
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 358 LGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN 417
            G+E +         ++   L ++ +   + S   + T L Q  L  N++   I      
Sbjct: 270 KGLEAS--------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDD--NA 318

Query: 418 CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDIS 476
              L  L                        LNLS N L     + +   L  L  LD+S
Sbjct: 319 FWGLTHLLK----------------------LNLSQNFLG-SIDSRMFENLDKLEVLDLS 355

Query: 477 SNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNL 527
            N     +      G  +L+ L +  N    S+P      L S+ ++ L  N  
Sbjct: 356 YNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 64/380 (16%), Positives = 120/380 (31%), Gaps = 46/380 (12%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGK 97
           +DL   SI          L  L+ + +   +    I +     L  L  L L  N F  +
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 98  IPTN-LSRCSNLVKFEASNNKLAGES-PAEI-GNLLKFQLLNIAENHLRGQLPASI-GNL 153
           + T   +  +NL     +   L G          L   ++L + +N+++   PAS   N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 154 SALQEINVNGNRLGGRIPS---TRSHVRNLISFNVGLNQFSGMFPPI---------NNIS 201
                +++  N++   I          ++     +       M                +
Sbjct: 154 RRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN------------- 248
           S+  + +  N +  S+       +   +   +  +N                        
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 249 -ATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLE 307
            A+ ++  D++++     +   F    +L  L L +N +     N           T L 
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW------GLTHLL 326

Query: 308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL-- 365
            L L  N  G++      NL   +  +    N I          L NL  L ++ NQL  
Sbjct: 327 KLNLSQNFLGSIDSRMFENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 366 ----AVTILKSLQMLFLHEN 381
                   L SLQ ++LH N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 4e-14
 Identities = 55/355 (15%), Positives = 114/355 (32%), Gaps = 34/355 (9%)

Query: 84  LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEI-GNLLKFQLLNIAENHL 142
           +  + L+ N  +    T+ SR  +L   +                 L    +L +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 143 RGQLPASI-GNLSALQEINVNGNRLGGRIPSTRS--HVRNLISFNVGLNQFSGMFPPI-- 197
             QL       L+ L+ + +    L G + S      + +L    +  N    + P    
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 198 NNISSLEYIFIHRN---------IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 248
            N+     + +  N         + +        + L ++    ++   L      +   
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 249 ATNLQKLDINRNLFSGKVSINFGGLQNLS-----WLNLGKNNLGTRTANDLDFITLLT-- 301
            T++  LD++ N F   ++  F      +      L+   N   +    +       T  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 302 --NCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNAL 358
               + ++   L  ++  A+L    ++  T +  +    N+I+  I D     L +L  L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 359 GVEFNQLAV------TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
            +  N L          L  L++L L  N ++         L  L +  L+ N L
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 469 NLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRN 525
           ++  +D+S N  + E+  T       L++L ++  +    I + T   L S+  L L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556
                       L+ L  L L+  + +   L
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 75/486 (15%), Positives = 165/486 (33%), Gaps = 48/486 (9%)

Query: 84  LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR 143
            + L+L+ N  S     ++S  S L     S+N++              + L+++ N L+
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTR--SHVRNLISFNVGLNQFSGMFPPINNIS 201
             +      +++L+ ++++ N     +P  +   ++  L    +   +F  +        
Sbjct: 114 N-ISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 202 SLEYIFIH---RNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ--KLD 256
            L  I +     +I  G        N   L       +  +  +  S++   +LQ   + 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 257 INRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316
           +N       ++      +  + LN+   ++ T T      +        +E L + +   
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIET-TWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 317 GAVLPFSLANLSTTMTGIAF----GNNQISGFIPDGIANLVNLNALGVEFNQLAV----- 367
              +       S T           N           +    +N   +  +         
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 368 -TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT 426
                S   L   +NV   ++      L  L   +L+ N L  N        KN+  L T
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLET 407

Query: 427 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPT 486
                                     ++L S  +       ++++ L++SSNM +G +  
Sbjct: 408 LDVS---------------------LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 487 TLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ-YLENLSFLSFLN 545
            L    ++ L + +N    SIP  ++ L+++ EL+++ N L   +P    + L+ L ++ 
Sbjct: 447 CLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503

Query: 546 LSYNHF 551
           L  N +
Sbjct: 504 LHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 56/362 (15%), Positives = 113/362 (31%), Gaps = 33/362 (9%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
            L  LR   +S N +            +L+ LD++ N      +I+   + +L  L+L  
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSF 130

Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG 343
           N+      + L       N TKL  L L + +F  +    +A+L  +   +   +  I G
Sbjct: 131 NDF-----DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 344 FIPDGIANLVNL-------------NALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSF 390
              + +                     + +  N L    L ++++   +   L   +   
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 391 LGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLIL--LTTRKNKPSGTMPRQLPRIITLSV- 447
               T+L   L  +                  +  L       +  + R+       ++ 
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 448 ---LLNLSDNLLSGHFPAEVGKLKNLVSLDISSN-MFSGEIPTTLGCTSLEYLCMQDNSF 503
              + ++ + +      A       +    +S +      +      +S  +L    N F
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 504 TGSIPSTLSSLKSITELDLSRNNLS-----GHIPQYLENLSFLSFLNLSYNHFESKSLFV 558
           T S+    S+LK +  L L RN L        + + + +L  L     S N         
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 559 WP 560
           W 
Sbjct: 426 WA 427

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 71/449 (15%), Positives = 139/449 (30%), Gaps = 53/449 (11%)

Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSALQEINVNGNRLGGRIPS 172
           S N ++     +I  L + ++L ++ N +R  L   +      L+ ++V+ NRL   I  
Sbjct: 60  SQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISC 117

Query: 173 TRSHVRNLISFNVGLNQFS--GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRF 230
               + +L   ++  N F    +     N++ L ++ +    +   L L    +L     
Sbjct: 118 --CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCI 174

Query: 231 FIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRT 290
            +   +      +       N   L +  +  S         +  L  L L    L    
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE- 233

Query: 291 ANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIA 350
            N    +T L+  T+   L+  + +           L             I         
Sbjct: 234 -NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 351 NLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN 410
           +              + T LKSL +  +   V   +  +       +  ++L ++D    
Sbjct: 293 DREEF--------TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNL 470
                 +  +                            LN + N+ +         LK L
Sbjct: 345 HMVCPPSPSSF-------------------------TFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 471 VSLDISSNMFS-----GEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSL-KSITELDLSR 524
            +L +  N          +   +  +SLE L +  NS          +  +SI  L+LS 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNM--SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 525 NNLSGHIPQYLENLSFLSFLNLSYNHFES 553
           N L+G + + L     +  L+L  N   S
Sbjct: 438 NMLTGSVFRCLPPK--VKVLDLHNNRIMS 464

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 52/368 (14%), Positives = 115/368 (31%), Gaps = 32/368 (8%)

Query: 55  GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
           GNL+ L  + L+   FR     ++  +  L    +  +  S  I    +    +      
Sbjct: 143 GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 115 NNKLAGE-----------SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNG 163
           +                 +      L   +L +     L   L       + L     + 
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 164 NRLGGRIPST-----RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
                             V  L  +N+ + +         + ++L+ + I        L 
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 219 LDIGV--NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNL 276
               +      +   ++S ++          + ++   L+  +N+F+  V      L+ L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 277 SWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAF 336
             L L +N L  +    +  +    N + LE L +  N   +         + ++  +  
Sbjct: 380 QTLILQRNGL--KNFFKVALM--TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 337 GNNQISGFIPDGIANLVNLNALGVEFNQL-----AVTILKSLQMLFLHENVLQGTIPSFL 391
            +N ++G +   +     +  L +  N++      VT L++LQ L +  N L+       
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVF 493

Query: 392 GNLTMLTQ 399
             LT L  
Sbjct: 494 DRLTSLQY 501

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 64/339 (18%), Positives = 119/339 (35%), Gaps = 79/339 (23%)

Query: 217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVS-INFGGLQN 275
           LP++   +L    F+    N ++G+  D  S     +K  +     +  VS +    +  
Sbjct: 5   LPINNNFSLSQNSFY----NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
            S L L + NL +   N            ++ VL +  N   + LP   A+L      + 
Sbjct: 61  FSELQLNRLNLSSLPDNL---------PPQITVLEITQNALIS-LPELPASLEY----LD 106

Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAV--TILKSLQMLFLHENVLQGTIPSFLGN 393
             +N++S  +P+  A+L +L+   V+ NQL +   +   L+ +    N L   +P    +
Sbjct: 107 ACDNRLS-TLPELPASLKHLD---VDNNQLTMLPELPALLEYINADNNQLT-MLPELPTS 161

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
           L +L+   +  N L   +P    + + L                            ++S 
Sbjct: 162 LEVLS---VRNNQL-TFLPELPESLEAL----------------------------DVST 189

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSS 513
           NLL    PA   +  +    +I                   +   ++N  T  IP  + S
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEI-------------------FFRCRENRIT-HIPENILS 228

Query: 514 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           L     + L  N LS  I + L   +     +    +F 
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 7e-16
 Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 39/227 (17%)

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLAV---TILKSLQMLFLHENVLQGTIPSFLGNL 394
            N+    + + +  +   + L +    L+     +   + +L + +N L  ++P    +L
Sbjct: 46  RNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPASL 102

Query: 395 TMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN 450
             L        D   N    +P    + K+L +               LP +  L   +N
Sbjct: 103 EYL--------DACDNRLSTLPELPASLKHLDV--------DNNQLTMLPELPALLEYIN 146

Query: 451 LSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPST 510
             +N L+   P       +L  L + +N  +  +P      SLE L +  N    S+P+ 
Sbjct: 147 ADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPE--SLEALDVSTNLLE-SLPAV 198

Query: 511 LSSLKSITE----LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
                   E         N ++ HIP+ + +L     + L  N   S
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.9 bits (194), Expect = 1e-15
 Identities = 65/343 (18%), Positives = 109/343 (31%), Gaps = 81/343 (23%)

Query: 196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG---NNLTGSLQDSLSNATNL 252
           PINN  SL     +  I       D            + G   N     L++ L      
Sbjct: 6   PINNNFSLSQNSFYNTIS--GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQF 61

Query: 253 QKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
            +L +NR   S   S+       ++ L + +N L          I+L      LE L   
Sbjct: 62  SELQLNRLNLS---SLPDNLPPQITVLEITQNAL----------ISLPELPASLEYLDAC 108

Query: 313 SNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV--TIL 370
            NR  + LP   A+L      +   NNQ++  +P+  A L  +N    + NQL +   + 
Sbjct: 109 DNRL-STLPELPASL----KHLDVDNNQLT-MLPELPALLEYIN---ADNNQLTMLPELP 159

Query: 371 KSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK 430
            SL++L +  N L   +P    +L  L    +  N LL ++P       +          
Sbjct: 160 TSLEVLSVRNNQLT-FLPELPESLEALD---VSTN-LLESLPAVPVRNHHSE-------- 206

Query: 431 PSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGC 490
                           +     +N ++ H P  +  L                       
Sbjct: 207 -------------ETEIFFRCRENRIT-HIPENILSLDPT-------------------- 232

Query: 491 TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
                + ++DN  +  I  +LS   +  +    R   S    Q
Sbjct: 233 ---CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 3e-13
 Identities = 61/369 (16%), Positives = 111/369 (30%), Gaps = 87/369 (23%)

Query: 57  LSFLRSINLANNSFRAEIPHEVGNLFR----LQNLTLTNNYFSGKIPTNLSRC--SNLVK 110
           L    + +L+ NSF   I     + F      +   L       +  + L  C  +   +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLINQFSE 63

Query: 111 FEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI 170
            + +   L+   P  +   +    L I +N L   LP    +L  L   +   NRL   +
Sbjct: 64  LQLNRLNLS-SLPDNLPPQITV--LEITQNALI-SLPELPASLEYL---DACDNRLS-TL 115

Query: 171 PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRF 230
           P   + +++L   +V  NQ +                         LP         L +
Sbjct: 116 PELPASLKHL---DVDNNQLT------------------------MLPELPA----LLEY 144

Query: 231 FIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRT 290
                N LT  L +                              +L  L++  N L    
Sbjct: 145 INADNNQLT-MLPELP---------------------------TSLEVLSVRNNQLTF-- 174

Query: 291 ANDLDFITLLTNCTKLEVLVLDSNRFGAV--LPFSLANLSTTMTGIAFGNNQISGFIPDG 348
                   L      LE L + +N   ++  +P    +   T        N+I+  IP+ 
Sbjct: 175 --------LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 349 IANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL 408
           I +L     + +E N L+  I +SL       +     I   + +    T      + + 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

Query: 409 GNIPPSIGN 417
              P +  +
Sbjct: 286 AWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 435 MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISS---NMFSGEIPTTLGCT 491
           M   LP     S+  N   N +SG +              +     N     +   L   
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-IN 59

Query: 492 SLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
               L +   + + S+P  L     IT L++++N L   +P+   +   L +L+   N  
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPAS---LEYLDACDNRL 112

Query: 552 ES 553
            +
Sbjct: 113 ST 114

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 65/265 (24%), Positives = 99/265 (37%), Gaps = 22/265 (8%)

Query: 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
             +L L +N+   +      NL   +  +   NN+IS   P   A LV L  L +  NQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 366 AV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL-LGNIPPSI-GNCKN 420
                 + K+LQ L +HEN +     S    L  +    L  N L    I        K 
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 421 LILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNM 479
           L  +       + T+P+ LP  +T    L+L  N ++    A     L NL  L +S N 
Sbjct: 173 LSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 480 FSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG------HI 531
            S  +          L  L + +N     +P  L+  K I  + L  NN+S         
Sbjct: 228 IS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 532 PQYLENLSFLSFLNLSYNHFESKSL 556
           P Y    +  S ++L  N  +   +
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEI 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 52/258 (20%), Positives = 88/258 (34%), Gaps = 9/258 (3%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
              ++L NN        +  NL  L  L L NN  S   P   +    L +   S N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI--PSTRSHV 177
                    L   Q L + EN +     +    L+ +  + +  N L            +
Sbjct: 114 ELPEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 178 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN 237
           + L    +     + +  P     SL  + +  N     +       L NL    +S N+
Sbjct: 171 KKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 238 LTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFI 297
           ++     SL+N  +L++L +N N    KV       + +  + L  NN+    +ND    
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 298 TLLTNCTKLEVLVLDSNR 315
              T       + L SN 
Sbjct: 287 GYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 54/338 (15%), Positives = 95/338 (28%), Gaps = 74/338 (21%)

Query: 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285
           P+     +  N +T        N  NL  L +  N  S      F  L  L  L L KN 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI-SGF 344
           L            +      L+ L +  N    V       L   M  +  G N + S  
Sbjct: 112 LKELPEK------MPKT---LQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSG 161

Query: 345 IPDGI-ANLVNLNALGVEFNQLA---VTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQR 400
           I +G    +  L+ + +    +      +  SL  L L  N +     + L  L  L + 
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK- 220

Query: 401 LLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHF 460
                                                           L LS N +S   
Sbjct: 221 ------------------------------------------------LGLSFNSISAVD 232

Query: 461 PAEVGKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTG------SIPSTLSS 513
              +    +L  L +++N    ++P  L     ++ + + +N+ +         P   + 
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 514 LKSITELDLSRNNLSGH-IPQYL-ENLSFLSFLNLSYN 549
             S + + L  N +    I       +   + + L   
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 48/315 (15%), Positives = 103/315 (32%), Gaps = 36/315 (11%)

Query: 22  CQWTGVTCGHRHQRVI---------GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRA 72
           C    V C       +          LDL++  I         NL  L ++ L NN    
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 73  EIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF 132
             P     L +L+ L L+ N    ++P  + +   L +     N++     +    L + 
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQM 147

Query: 133 QLLNIAENHLRGQL--PASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190
            ++ +  N L+       +   +  L  I +    +   IP       +L   ++  N+ 
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKI 204

Query: 191 S----GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL 246
           +            +++L  + +  N    ++      N P+LR   ++ N L   +   L
Sbjct: 205 TKVDAASL---KGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 247 SNATNLQKLDINRNLFSG------KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
           ++   +Q + ++ N  S                 + S ++L  N +         F  + 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV- 318

Query: 301 TNCTKLEVLVLDSNR 315
                   + L + +
Sbjct: 319 ---YVRAAVQLGNYK 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 5e-16
 Identities = 65/387 (16%), Positives = 131/387 (33%), Gaps = 43/387 (11%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           LD  + SI       +  L+ L  +   +N+       ++     L  L   +N  +   
Sbjct: 47  LDCHNSSITDM--TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN-- 99

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158
             +++  + L       NKL   +  ++        LN A N L       + + + L E
Sbjct: 100 -LDVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTE 152

Query: 159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
           ++ + N+   ++    +    L + +   N+ + +   ++    L  +    N     L 
Sbjct: 153 LDCHLNKKITKLDV--TPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTN-NITKLD 207

Query: 219 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSW 278
           L+       L F   S N LT      ++  T L   D + N  +    ++   L  L+ 
Sbjct: 208 LN---QNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTT 258

Query: 279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGN 338
           L+  + +L      ++D    LT+ T+L     +  R    L  +    +T +  +    
Sbjct: 259 LHCIQTDL-----LEID----LTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQA 306

Query: 339 NQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLT 398
             I+         LV L     E  +L V+    L+ L      +Q    S +G +  L 
Sbjct: 307 AGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALN 364

Query: 399 QRLLEVNDLLGNIPPSIGNCKNLILLT 425
                    +  +P       +L +  
Sbjct: 365 NNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 60/465 (12%), Positives = 127/465 (27%), Gaps = 90/465 (19%)

Query: 84  LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR 143
             +              +  + + L   +  N+ +       I  L     L    N++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77

Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 203
                 +   + L  +  + N+L   +    + +  L   N   N+ + +   ++    L
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLT-NLDV--TPLTKLTYLNCDTNKLTKL--DVSQNPLL 129

Query: 204 EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263
            Y+   RN       +D+  +   L       N     L   ++  T L  LD + N  +
Sbjct: 130 TYLNCARNTLT---EIDVS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183

Query: 264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
               ++    + L+ LN   NN+       LD         +L  L   SN+        
Sbjct: 184 ---ELDVSQNKLLNRLNCDTNNI-----TKLDL----NQNIQLTFLDCSSNKL------- 224

Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVL 383
                   T I                 L   +       +L V+ L  L  L   +  L
Sbjct: 225 --------TEIDVTPLT----------QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266

Query: 384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRII 443
                +    L        +           + +   L                      
Sbjct: 267 LEIDLTHNTQLIYF-----QAEGCRKIKELDVTHNTQL---------------------- 299

Query: 444 TLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSF 503
               LL+     ++     ++ +   LV L +++   + E+  +   T L+ L   +   
Sbjct: 300 ---YLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVS-HNTKLKSLSCVNAHI 351

Query: 504 TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 548
                S +  + ++     +         + L N S    ++   
Sbjct: 352 Q-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 56/331 (16%), Positives = 97/331 (29%), Gaps = 34/331 (10%)

Query: 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285
            N    + +   +  +   S      L  LD + +  +         L  L+ L    NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
           +       LD     +  T L  L  DSN+   +    L  L+     +    N+++   
Sbjct: 76  I-----TTLDL----SQNTNLTYLACDSNKLTNLDVTPLTKLTY----LNCDTNKLTKLD 122

Query: 346 PDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN 405
                 L  LN       ++ V+    L  L  H N  +      +   T LT      N
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFN 180

Query: 406 DLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG 465
            +       +   K L  L    N  +     Q  ++  L    + S N L+     +V 
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFL----DCSSNKLTE---IDVT 230

Query: 466 KLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
            L  L   D S N  + E+  +   + L  L          I   L+    +        
Sbjct: 231 PLTQLTYFDCSVNPLT-ELDVS-TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

Query: 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556
                +   + + + L  L+          L
Sbjct: 286 RKIKELD--VTHNTQLYLLDCQAAGITELDL 314

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 63/334 (18%), Positives = 105/334 (31%), Gaps = 46/334 (13%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
            L  L   I + NN+T      LS  TNL  L  + N  +   +++   L  L++LN   
Sbjct: 62  KLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDT 115

Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG 343
           N L       LD     +    L  L    N    +       L    T +    N+   
Sbjct: 116 NKL-----TKLDV----SQNPLLTYLNCARNTLTEIDVSHNTQL----TELDCHLNKKIT 162

Query: 344 FIPDGIANLVNLNALGVEFNQLA---VTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQR 400
            +   +     L  L   FN++    V+  K L  L    N +   +   L     LT  
Sbjct: 163 KLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF- 216

Query: 401 LLEVND-LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH 459
            L+ +   L  I   +     L       N  +      L ++ TL  +      +    
Sbjct: 217 -LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI---- 269

Query: 460 FPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITE 519
              ++     L+           E+  T   T L  L  Q    T  +   LS    +  
Sbjct: 270 ---DLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAGIT-ELD--LSQNPKLVY 322

Query: 520 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
           L L+   L+  +   + + + L  L+    H + 
Sbjct: 323 LYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD 353

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 42/347 (12%)

Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V     L  +N A N+       +V +  +L  L    N    K+   ++  + L   + 
Sbjct: 123 VSQNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
           S NK+   +  ++        LN   N++       +     L  ++ + N+L   I   
Sbjct: 178 SFNKI---TELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDV- 229

Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            + +  L  F+  +N  + +   ++ +S L  +   +      + L    +   L +F  
Sbjct: 230 -TPLTQLTYFDCSVNPLTEL--DVSTLSKLTTLHCIQT-DLLEIDLT---HNTQLIYFQA 282

Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAND 293
            G      L   +++ T L  LD      +    ++      L +L L    L      +
Sbjct: 283 EGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL-----TE 332

Query: 294 LDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL- 352
           LD    +++ TKL+ L   +        FS       +        Q      + + N  
Sbjct: 333 LD----VSHNTKLKSLSCVNAHIQD---FSSVGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 353 ----VNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLT 395
               V+ + L    N + +              +    + +    +T
Sbjct: 386 LTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 8e-16
 Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 42/260 (16%)

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192
           + LN+ EN+++     +  +L  L+ + +  N +  +I                     G
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEV-------------------G 117

Query: 193 MFPPINNISSLEYIFIHRN-IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATN 251
            F   N ++SL  + +  N +    +P      L  LR   +  N +      + +   +
Sbjct: 118 AF---NGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 252 LQKLDINRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310
           L +LD+        +S   F GL NL +LNLG  N+          +  LT    LE L 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--------MPNLTPLVGLEELE 224

Query: 311 LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL----- 365
           +  N F  + P S   L +++  +   N+Q+S    +    L +L  L +  N L     
Sbjct: 225 MSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 366 -AVTILKSLQMLFLHENVLQ 384
              T L+ L  L LH N   
Sbjct: 284 DLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 35/237 (14%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFL 378
             + +    +    N I     D   +L +L  L +  N +      A   L SL  L L
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLT-TRKNKPSGTMP 436
            +N L          L+ L +  L  N +  +IP        +L+ L      K      
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKK------ 183

Query: 437 RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYL 496
                      L  +S+    G        L NL  L++       ++P       LE L
Sbjct: 184 -----------LEYISEGAFEG--------LFNLKYLNLGMCNIK-DMPNLTPLVGLEEL 223

Query: 497 CMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
            M  N F    P +   L S+ +L +  + +S       + L+ L  LNL++N+  S
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 50/262 (19%), Positives = 86/262 (32%), Gaps = 24/262 (9%)

Query: 60  LRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 118
              +          +P     +    + L L  N              +L   +   N +
Sbjct: 56  FSKVVCTRRGLSE-VPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR 178
                     L     L + +N L      +   LS L+E+ +  N +        + V 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 179 NLISFNVG-LNQFS----GMFPPINNISSLEYIFIHRN-IYHGSLPLDIGVNLPNLRFFI 232
           +L+  ++G L +      G F     + +L+Y+ +    I      +     L  L    
Sbjct: 172 SLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCNIKD----MPNLTPLVGLEELE 224

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN 292
           +SGN+       S    ++L+KL +  +  S      F GL +L  LNL  NNL +   +
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 293 DLDFITLLTNCTKLEVLVLDSN 314
                 L T    L  L L  N
Sbjct: 285 ------LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 50/243 (20%), Positives = 79/243 (32%), Gaps = 34/243 (13%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEF 362
           +    L L  N    +   +  +L   +  +  G N I   I  G    L +LN L +  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 363 NQLAV------TILKSLQMLFLHEN---VLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
           N L V        L  L+ L+L  N    +     + + +L  L   L E+  L   I  
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL--DLGELKKL-EYISE 189

Query: 414 SI-GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL-----LNLSDNLLSGHFPAEV-GK 466
                  NL  L              +  +  L+ L     L +S N             
Sbjct: 190 GAFEGLFNLKYLNLGMC--------NIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHG 240

Query: 467 LKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524
           L +L  L + ++  S  I      G  SL  L +  N+ +       + L+ + EL L  
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 525 NNL 527
           N  
Sbjct: 300 NPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115
            L  L+ +NL   + + ++P+ +  L  L+ L ++ N+F    P +    S+L K    N
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSALQEINVNGN 164
           ++++         L     LN+A N+L   LP  +   L  L E++++ N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 55/322 (17%), Positives = 96/322 (29%), Gaps = 63/322 (19%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN---FGG 272
           S+P  +   + +L    +S N +T      L    NLQ L +  N  +   +I    F  
Sbjct: 45  SIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSS 98

Query: 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMT 332
           L +L  L+L  N L   +++           + L  L L  N +  +   SL +  T + 
Sbjct: 99  LGSLEHLDLSYNYLSNLSSS------WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 333 GIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQG 385
            +  GN      I     A L  L  L ++ + L      ++  ++++  L LH      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 386 TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITL 445
            +  F+   + +    L   DL                                      
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTF---------------------------------HF 239

Query: 446 SVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTG 505
           S L     N L         K     ++ I+       +      + L  L    N    
Sbjct: 240 SELSTGETNSLI--------KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291

Query: 506 SIPSTLSSLKSITELDLSRNNL 527
                   L S+ ++ L  N  
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 50/290 (17%), Positives = 104/290 (35%), Gaps = 30/290 (10%)

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           IP+ L+    +   + SNN++   S +++   +  Q L +  N +      S  +L +L+
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI--NNISSLEYIFIHRNIYHG 215
            ++++ N L     S    + +L   N+  N +  +      ++++ L+ + +       
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
            +       L  L    I  ++L      SL +  N+  L ++       + I      +
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 276 LSWLNLGKNNLGTRTANDLDFIT--LLTNCTKLEVLVLDSNRFGAVLP--FSLANLSTTM 331
           +  L L   +L T   ++L       L        + +       V+     ++ L    
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE-- 281

Query: 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHEN 381
             + F  NQ+   +PDG                     L SLQ ++LH N
Sbjct: 282 --LEFSRNQLKS-VPDG-----------------IFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 26/268 (9%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363
             ++ L L +NR   +    L      +  +   +N I+    D  ++L +L  L + +N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 364 QLAV------TILKSLQMLFLHENVLQGTIP--SFLGNLTMLTQRLLEVNDLLGNIPPSI 415
            L+         L SL  L L  N  + T+   S   +LT L    +   D    I    
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 416 -GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSL 473
                 L  L    +      P+ L  I  +S L  L                  ++  L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL-ILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 474 DISSN---------MFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524
           ++            + +GE  + +   +   + + D S    +   L+ +  + EL+ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 525 NNLSGHIPQY-LENLSFLSFLNLSYNHF 551
           N L   +P    + L+ L  + L  N +
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 17/244 (6%)

Query: 56  NLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEA 113
               L+++ L +N     I  +   +L  L++L L+ NY S  + ++     S+L     
Sbjct: 74  RCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131

Query: 114 SNNKLAGESPAEI-GNLLKFQLLNIAENHLRGQLPASI-GNLSALQEINVNGNRLGGRIP 171
             N         +  +L K Q+L +       ++       L+ L+E+ ++ + L    P
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 172 STRSHVRNLISFNVGLNQFSGMFPPI--NNISSLEYIFIHRNIYHG-------SLPLDIG 222
            +   ++N+    + + Q   +   I  +  SS+E + +              +   +  
Sbjct: 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 223 VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLG 282
           +     R   I+  +L   +   L+  + L +L+ +RN         F  L +L  + L 
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 283 KNNL 286
            N  
Sbjct: 310 TNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 32/234 (13%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFL 378
           + L+  +  +   NN+I+      +   VNL AL +  N +      + + L SL+ L L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
             N L     S+   L+ LT   L  N     +  +                   ++   
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET-------------------SLFSH 147

Query: 439 LPRIITLSVLLNLS-DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYL 496
           L ++  L V    +   +    F      L  L  L+I ++      P +L    ++ +L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 497 CMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550
            +        +   +    S+  L+L   +L       L      S +      
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 30/189 (15%)

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
           + ++++ L L  N +     S L     L   +L  N  +  I     +  +L  L    
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEE--DSFSSLGSLEH-- 104

Query: 429 NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTT 487
                               L+LS N LS +  +     L +L  L++  N +     T+
Sbjct: 105 --------------------LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143

Query: 488 L--GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 544
           L    T L+ L + +      I     + L  + EL++  ++L  + P+ L+++  +S L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 545 NLSYNHFES 553
            L       
Sbjct: 204 ILHMKQHIL 212

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 11/194 (5%)

Query: 56  NLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEA 113
            LS L  +NL  N ++      +  +L +LQ L + N     KI     +  + L + E 
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG----R 169
             + L    P  + ++     L +        L   +   S+++ + +    L       
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 170 IPS----TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNL 225
           + +    +        +  +       +   +N IS L  +   RN    S+P  I   L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300

Query: 226 PNLRFFIISGNNLT 239
            +L+   +  N   
Sbjct: 301 TSLQKIWLHTNPWD 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
             +L L +N    +       L   +  +   NN+IS       + L  L  L +  N L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 366 AV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL-LGNIPPSIGNCKNL 421
                 +  SL  L +H+N ++         L  +    +  N L      P   +   L
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 422 ILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMF 480
             L   + K +  +P+ LP  +     L+L  N +      E   +   L  L +  N  
Sbjct: 175 NYLRISEAKLT-GIPKDLPETLNE---LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

Query: 481 SGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP------ 532
              I         +L  L + +N  +  +P+ L  LK +  + L  NN++  +       
Sbjct: 230 R-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCP 286

Query: 533 -QYLENLSFLSFLNLSYNHFESKSL 556
             +    ++ + ++L  N      +
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEV 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 58/284 (20%), Positives = 97/284 (34%), Gaps = 11/284 (3%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
              ++L NN        +   L  L  L L NN  S       S    L K   S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLG-GRIPSTRSHVR 178
              P    +L     L I +N +R         L  +  I + GN L             
Sbjct: 116 EIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 179 NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
            L    +   + +G+  P +   +L  + +  N    ++ L+  +    L    +  N +
Sbjct: 173 KLNYLRISEAKLTGI--PKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
                 SLS    L++L ++ N  S +V      L+ L  + L  NN+     ND   + 
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 299 LLTNCTKLEVLVLDSNR--FGAVLPFSLANLSTTMTGIAFGNNQ 340
                     + L +N   +  V P +   ++  +  I FGN +
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA-IQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 54/324 (16%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
           ++P +I    P+     +  N+++   +D      +L  L +  N  S      F  L+ 
Sbjct: 47  AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           L  L + KN+L     N      L ++   L  L +  NR   V     + L   M  I 
Sbjct: 104 LQKLYISKNHLVEIPPN------LPSS---LVELRIHDNRIRKVPKGVFSGL-RNMNCIE 153

Query: 336 FGNNQI-SGFIPDGIANLVNLNALGVEFNQLA---VTILKSLQMLFLHENVLQGTIPSFL 391
            G N + +     G  + + LN L +   +L      + ++L  L L  N +Q       
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ------- 206

Query: 392 GNLTMLTQRLLEVNDLLGNIPP-SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN 450
                              I    +     L  L    N+        L  + TL   L+
Sbjct: 207 ------------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE-LH 247

Query: 451 LSDNLLSGHFPAEVGKLKNLVSLDISSNMFS-------GEIPTTLGCTSLEYLCMQDNSF 503
           L +N LS   PA +  LK L  + + +N  +         +   +       + + +N  
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 504 TGSI--PSTLSSLKSITELDLSRN 525
                 P+T   +     +     
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 436 PRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT--LGCTSL 493
           P+++    TL   L+L +N +S     +   L++L +L + +N  S +I          L
Sbjct: 49  PKEISPDTTL---LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKL 104

Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
           + L +  N     IP  L    S+ EL +  N +          L  ++ + +  N  E+
Sbjct: 105 QKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 554 KSL 556
              
Sbjct: 162 SGF 164

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 178 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHRN-IYHGSLPLDIGVNLPNLRFFIISGN 236
            N I   + +N F  +         LE + + RN I   ++ +     L NL    +  N
Sbjct: 73  ENQIQ-IIKVNSFKHL-------RHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDN 122

Query: 237 NLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF 296
            LT     +    + L++L +  N      S  F  + +L  L+LG+    +  +     
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG--- 179

Query: 297 ITLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNL 355
                  + L  L L       +   + L  L      +    N +S   P     L++L
Sbjct: 180 --AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE----LDLSGNHLSAIRPGSFQGLMHL 233

Query: 356 NALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQ 399
             L +  +Q+      A   L+SL  + L  N L          L  L +
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 8e-13
 Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 37/238 (15%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFL 378
             +ST    +    NQI     +   +L +L  L +  N +      A   L +L  L L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLT-TRKNKPSGTMP 436
            +N L          L+ L +  L  N  + +IP        +L  L      +      
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKR------ 172

Query: 437 RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYL 496
                      L  +S+    G        L NL  L+++      EIP       L+ L
Sbjct: 173 -----------LSYISEGAFEG--------LSNLRYLNLAMCNLR-EIPNLTPLIKLDEL 212

Query: 497 CMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFES 553
            +  N  +   P +   L  + +L + ++ +   I +   +NL  L  +NL++N+   
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 58/294 (19%), Positives = 97/294 (32%), Gaps = 66/294 (22%)

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           +P  +S  +N        N++         +L   ++L ++ NH+R     +   L+ L 
Sbjct: 58  VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSL 217
            + +  NRL                                                 ++
Sbjct: 116 TLELFDNRL------------------------------------------------TTI 127

Query: 218 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN-FGGLQNL 276
           P    V L  L+   +  N +      + +   +L++LD+        +S   F GL NL
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 277 SWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAF 336
            +LNL   N        L  I  LT   KL+ L L  N   A+ P S   L   +  +  
Sbjct: 188 RYLNLAMCN--------LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWM 238

Query: 337 GNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQ 384
             +QI     +   NL +L  + +  N L        T L  L+ + LH N   
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 50/281 (17%), Positives = 87/281 (30%), Gaps = 37/281 (13%)

Query: 60  LRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 118
              +     + R  +P     +    + L L  N        +     +L   + S N +
Sbjct: 45  FSKVICVRKNLRE-VPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR 178
                     L     L + +N L      +   LS L+E+ +  N +   IP       
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIP------- 152

Query: 179 NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238
                       S  F   N I SL  + +        +       L NLR+  ++  NL
Sbjct: 153 ------------SYAF---NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298
                 +L+    L +LD++ N  S     +F GL +L  L + ++ +     N      
Sbjct: 198 RE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN------ 249

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN 339
              N   L  + L  N    +       L   +  I   +N
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPL-HHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 53/243 (21%), Positives = 79/243 (32%), Gaps = 34/243 (13%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEF 362
           T   +L L  N+   +   S  +L   +  +    N I   I  G    L NLN L +  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 363 NQL------AVTILKSLQMLFLHEN---VLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPP 413
           N+L      A   L  L+ L+L  N    +     + + +L  L   L E+   L  I  
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL--DLGELK-RLSYISE 178

Query: 414 SI-GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL-----LNLSDNLLSGHFPAEV-GK 466
                  NL  L              L  I  L+ L     L+LS N LS          
Sbjct: 179 GAFEGLSNLRYLNLAMC--------NLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQG 229

Query: 467 LKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524
           L +L  L +  +     I         SL  + +  N+ T       + L  +  + L  
Sbjct: 230 LMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 525 NNL 527
           N  
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L+L    I         +L  L  + L+ N  R         L  L  L L +N  +  I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 99  PTN-LSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE-NHLRGQLPASIGNLSAL 156
           P       S L +    NN +          +   + L++ E   L      +   LS L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRNI 212
           + +N+    L   IP+  + +  L   ++  N  S    G F     +  L+ +++ ++ 
Sbjct: 188 RYLNLAMCNLR-EIPNL-TPLIKLDELDLSGNHLSAIRPGSFQ---GLMHLQKLWMIQSQ 242

Query: 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN 260
               +  +   NL +L    ++ NNLT    D  +   +L+++ ++ N
Sbjct: 243 IQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 6e-13
 Identities = 50/278 (17%), Positives = 83/278 (29%), Gaps = 32/278 (11%)

Query: 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
           L      LE L+   +    +  F+    S ++  +     +I   I  G   ++ ++ L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 359 -----------GVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
                      G     L       L +L L          ++L  L    +  L+V  +
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSI 156

Query: 408 LGN-----IPPSIGNCKNLI-------LLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 455
                       +     L             +   S   P + P +  L+ L N     
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA-LRNAGMET 215

Query: 456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT--LGCTSLEYLCMQDNSFTGSIPSTLSS 513
            SG   A       L  LD+S N              + L  L +        +P  L +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA 274

Query: 514 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
              ++ LDLS N L    P   + L  +  L+L  N F
Sbjct: 275 --KLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 43/285 (15%), Positives = 78/285 (27%), Gaps = 40/285 (14%)

Query: 55  GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSR---CSNLVKF 111
           G  S    +   +         ++     L+ LT+       +I     R    S L + 
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 112 EASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP 171
              N ++ G +P  +       L  +           ++ N+S           L     
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNIL-----------NLRNVS----WATRDAWLAELQQ 145

Query: 172 STRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD---IGVNLPNL 228
             +  ++ L         FS     +    +L  + +  N   G   L      +  P L
Sbjct: 146 WLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 229 RFFIISGNNLT---GSLQDSLSNATNLQKLDINRNLFSGKV-SINFGGLQNLSWLNLGKN 284
           +   +    +    G      +    LQ LD++ N       + +      L+ LNL   
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 285 NLGTRTA-------------NDLDFITLLTNCTKLEVLVLDSNRF 316
            L                  N LD         ++  L L  N F
Sbjct: 264 GLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 352 LVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPS---FLGNLTMLTQRLLEVNDLL 408
           L  ++          +    SL+ L +    +   I      +  ++ L +  LE  ++ 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 409 GNIPPSIGNCKNLILLT-TRKNKPSGTMPRQLPRIITLSVL----LNLSDNLLSGHFPAE 463
           G  PP +       L     +N    T    L  +          L+++          +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 464 VGKLKNLVSLDISSNMFSGEIPTT-----LGCTSLEYLCMQDNSFT---GSIPSTLSSLK 515
           V     L +LD+S N   GE         L   +L+ L +++       G   +  ++  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 516 SITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFES 553
            +  LDLS N+L         +  S L+ LNLS+   + 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 44/296 (14%), Positives = 83/296 (28%), Gaps = 20/296 (6%)

Query: 215 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDS-LSNATNLQKLDINRNLFSGKVSIN---F 270
           G+  +++     +L + +   +      Q + +  + +L++L +       ++       
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 271 GGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT 330
            G+  L  L L    + T TA          +   L +  +      A L      L   
Sbjct: 92  LGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSF 390
           +  ++        F  + +     L+ L +  N                  ++    P  
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-----------GLISALCPLK 199

Query: 391 LGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN 450
              L +L  R   +    G           L  L    N              +    LN
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 451 LSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGS 506
           LS   L        G    L  LD+S N      P+      +  L ++ N F  S
Sbjct: 260 LSFTGLKQVPK---GLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 42/288 (14%), Positives = 80/288 (27%), Gaps = 23/288 (7%)

Query: 111 FEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI 170
             A N   A +     G      LL   +          I    +L+ + V   R+  RI
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 171 PS------TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG---SLPLDI 221
                     S ++ L   N+ +   +           L  + +    +      L    
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 222 GVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKV----SINFGGLQNLS 277
               P L+   I+  +      + +     L  LD++ N   G+     ++       L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 278 WLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
            L L    +            L     +L+ L L  N           +  + +  +   
Sbjct: 205 VLALRNAGM---ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHEN 381
              +        A L  L+   + +N+L    +   L  +  L L  N
Sbjct: 262 FTGLKQVPKGLPAKLSVLD---LSYNRLDRNPSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 34/216 (15%), Positives = 63/216 (29%), Gaps = 29/216 (13%)

Query: 32  RHQRVIGLDLRHQSIGGFLSPFVGNLSF----LRSINLANNSFRAEIPHEVGNLFRLQNL 87
               +  L+LR+ S     +       +    L+ +++A          +V     L  L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 88  TLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLP 147
            L++N   G+     + C                 P +   L    L N       G   
Sbjct: 179 DLSDNPELGERGLISALC-----------------PLKFPTLQVLALRNAGMETPSGVCS 221

Query: 148 ASIGNLSALQEINVNGNRLGGRIPSTR-SHVRNLISFNVGLNQFSGMFPPINNISSLEYI 206
           A       LQ ++++ N L     +        L S N+       +   +   + L  +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVL 279

Query: 207 FIHRN-IYHGSLPLDIGVNLPNLRFFIISGNNLTGS 241
            +  N +     P      LP +    + GN    S
Sbjct: 280 DLSYNRLDRNPSPD----ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 13/177 (7%)

Query: 390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL- 448
           + G  ++         +        I    +L  LT R  +    +     R++ +S L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 449 -LNLSDNLLSGHFPAEVGKL--KNLVSLDISSNMFSGEIP-----TTLGCTSLEYLCMQD 500
            L L +  ++G  P  + +    +L  L++ +  ++                L+ L +  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 501 NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY----LENLSFLSFLNLSYNHFES 553
                     +    +++ LDLS N   G               L  L L     E+
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 55/313 (17%), Positives = 93/313 (29%), Gaps = 91/313 (29%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
           ++  +L++  N         F  L  L+ L+L  N L  +              T L+ L
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT----TSLKYL 83

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV-- 367
            L                           N +   +      L  L  L  + + L    
Sbjct: 84  DLS-------------------------FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 117

Query: 368 -----TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI 422
                  L++L  L +     +         L+ L                         
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV----------------------- 154

Query: 423 LLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFS 481
                                     L ++ N    +F  ++  +L+NL  LD+S     
Sbjct: 155 --------------------------LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 482 GEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL- 538
            ++  T     +SL+ L M  N+F          L S+  LD S N++     Q L++  
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 539 SFLSFLNLSYNHF 551
           S L+FLNL+ N F
Sbjct: 248 SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 45/224 (20%), Positives = 79/224 (35%), Gaps = 23/224 (10%)

Query: 345 IPDGIANLVNLNALGVEFNQLAV------TILKSLQMLFLHENVL--QGTIPSFLGNLTM 396
           +P GI    +   L +E N+L          L  L  L L  N L  +G         T 
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 397 LTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK----PSGTMPRQLPRIITLSVLLNLS 452
           L    L  N ++  +  +    + L  L  + +        ++   L  +I L    ++S
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL----DIS 134

Query: 453 DNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPS 509
                      +   L +L  L ++ N F       +     +L +L +         P+
Sbjct: 135 HTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 510 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
             +SL S+  L++S NN         + L+ L  L+ S NH  +
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 8/233 (3%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEASNNK 117
              + L +N  ++        L +L  L+L++N   F G    +    ++L   + S N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSALQEINVNGNRLGGRIPSTRSH 176
           +     +    L + + L+   ++L+     S+  +L  L  ++++            + 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 177 VRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIIS 234
           + +L    +  N F   F P     + +L ++ + +      L      +L +L+   +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 235 GNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ-NLSWLNLGKNNL 286
            NN             +LQ LD + N               +L++LNL +N+ 
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 3e-12
 Identities = 45/275 (16%), Positives = 85/275 (30%), Gaps = 23/275 (8%)

Query: 44  QSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLS 103
           ++  G   P    L  L + +L +   +             +   L  +        + +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSA 346

Query: 104 RCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQL---PASIGNLSALQEIN 160
               L + E S  K      +E+ +  + Q L          +     ++  L   +E  
Sbjct: 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 161 VNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD 220
              + L    P   +++ +L S  +  N    M      +  L +  +          L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------LC 457

Query: 221 IGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWL 279
               L  +    +S N L  +L  +L+    L+ L  + N      ++     L  L  L
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQEL 513

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
            L  N L          I  L +C +L +L L  N
Sbjct: 514 LLCNNRL-----QQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 6e-10
 Identities = 42/213 (19%), Positives = 68/213 (31%), Gaps = 20/213 (9%)

Query: 346 PDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN 405
               A    L    +   +  V      Q        LQ   P     L  +   +  + 
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVL-----QSELESCKELQELEPENKWCLLTIILLMRAL- 395

Query: 406 DLLGNIPPSIGNCKNLILLT-TRKNKPSGTMPRQLPRIITLSVL------LNLSDNLLSG 458
           D L     ++     L  +   R         + L     L +       L+L+   L+ 
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 459 HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSI 517
                + +L  +  LD+S N     +P  L     LE L   DN+   ++   +++L  +
Sbjct: 456 --LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRL 510

Query: 518 TELDLSRNNLSGH-IPQYLENLSFLSFLNLSYN 549
            EL L  N L      Q L +   L  LNL  N
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 15  WNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI 74
              S  L + + +   +   RV  L L H+ +       +  L  +  ++L++N  R  +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRV--LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-AL 478

Query: 75  PHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG-ESPAEIGNLLKFQ 133
           P  +  L  L+ L  ++N     +   ++    L +    NN+L    +   + +  +  
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 134 LLNIAENHL 142
           LLN+  N L
Sbjct: 537 LLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 30/218 (13%)

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLAVTI---LKSLQMLFLHENVLQGTIPSFLGNL 394
           + + S  +   + +   L  L  E     +TI   +++L  L   +  LQ     +   L
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-----YFSTL 411

Query: 395 TML-----TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL- 448
             +            +  L           ++ +L              L  +  L  L 
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK--------DLTVLCHLEQLL 463

Query: 449 ----LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFT 504
               L+LS N L    P  +  L+ L  L  S N     +        L+ L + +N   
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQ 521

Query: 505 G-SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 541
             +    L S   +  L+L  N+L        E L+ +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 25/196 (12%), Positives = 53/196 (27%), Gaps = 25/196 (12%)

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPR 437
           +                  L +  L V      +   + +CK L  L         T+  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL 390

Query: 438 QLPRIITLSVLLNLSDNL--------------------LSGHFPAEVGKLKNLVSLDISS 477
            +  +  L                                        +  ++  L ++ 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 478 NMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 537
              +  +        + +L +  N    ++P  L++L+ +  L  S N L  ++   + N
Sbjct: 451 KDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VAN 506

Query: 538 LSFLSFLNLSYNHFES 553
           L  L  L L  N  + 
Sbjct: 507 LPRLQELLLCNNRLQQ 522

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 8e-05
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 28/157 (17%)

Query: 83  RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHL 142
           R   L    + F  +        +++     ++  L       +  LL    L+++ N L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL 475

Query: 143 RGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISS 202
           R  LP ++  L  L+ +  + N L   +    +++  L    +  N+       +   ++
Sbjct: 476 R-ALPPALAALRCLEVLQASDNAL-ENVDGV-ANLPRLQELLLCNNR-------LQQSAA 525

Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
           ++ +                 + P L    + GN+L 
Sbjct: 526 IQPLV----------------SCPRLVLLNLQGNSLC 546

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 3e-12
 Identities = 49/306 (16%), Positives = 94/306 (30%), Gaps = 55/306 (17%)

Query: 246 LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK 305
                   K ++ +   +  V+ N   L ++  +    +++ +        +  +     
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--------VQGIQYLPN 66

Query: 306 LEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
           +  L L+ N+   + P + L NL      +    N+I       + +L  L +L +E N 
Sbjct: 67  VTKLFLNGNKLTDIKPLTNLKNL----GWLFLDENKIKDL--SSLKDLKKLKSLSLEHNG 120

Query: 365 L----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKN 420
           +     +  L  L+ L+L  N +  T  + L  LT L    LE N +       I     
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-----DIVPLAG 173

Query: 421 LILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMF 480
           L  L                        L LS N +S      +  LKNL  L++ S   
Sbjct: 174 LTKLQN----------------------LYLSKNHISD--LRALAGLKNLDVLELFSQEC 209

Query: 481 SGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS 539
             +             +   D S     P  +S      + ++  +              
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 540 FLSFLN 545
            ++   
Sbjct: 268 PVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 55/278 (19%)

Query: 84  LQNLTLTNNYFSGKIP--TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENH 141
           +      +      I         +  +K       +          L     +    + 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 142 LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS 201
           ++  +   I  L  + ++ +NGN+L        ++++NL    +  N+       I ++S
Sbjct: 55  IK-SVQG-IQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDENK-------IKDLS 103

Query: 202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNL 261
           SL+                   +L  L+   +  N ++  + + L +   L+ L +  N 
Sbjct: 104 SLK-------------------DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK 142

Query: 262 FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP 321
            +  ++     L  L  L+L  N +          I  L   TKL+ L L  N    +  
Sbjct: 143 IT-DIT-VLSRLTKLDTLSLEDNQISD--------IVPLAGLTKLQNLYLSKNHISDLRA 192

Query: 322 FS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
            + L NL      +   + +      +  +NLV  N +
Sbjct: 193 LAGLKNLDV----LELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 52/310 (16%), Positives = 106/310 (34%), Gaps = 26/310 (8%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115
             +     NL   S    +      L  +  +   N+     +   +    N+ K   + 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS 175
           NKL    P  + NL     L + EN ++  L  S+ +L  L+ +++  N +     +   
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGI--SDINGLV 128

Query: 176 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRN-IYHGSLPLDIGVNLPNLRFFIIS 234
           H+  L S  +G N+ +     ++ ++ L+ + +  N I      +     L  L+   +S
Sbjct: 129 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLS 183

Query: 235 GNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDL 294
            N+++  L+ +L+   NL  L++        ++       NL   N  KN  G+     L
Sbjct: 184 KNHIS-DLR-ALAGLKNLDVLELFSQEC---LNKPINHQSNLVVPNTVKNTDGS-----L 233

Query: 295 DFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVN 354
               ++++    E   +  +        S         G A          P      V+
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

Query: 355 LNALGVEFNQ 364
            +  G     
Sbjct: 294 YDVDGTVIKT 303

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 30/228 (13%)

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLHENVLQGTIPSFLGN 393
           +  I    PD            ++   +   +    L S+  +  + +         +  
Sbjct: 8   STPIKQIFPD--DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQGIQY 63

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL----- 448
           L  +T+  L  N L  +I P + N KNL  L   +N        ++  + +L  L     
Sbjct: 64  LPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDEN--------KIKDLSSLKDLKKLKS 113

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIP 508
           L+L  N +S      +  L  L SL + +N  + +I      T L+ L ++DN  +  I 
Sbjct: 114 LSLEHNGISDING--LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 509 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556
             L+ L  +  L LS+N++S    + L  L  L  L L      +K +
Sbjct: 170 P-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPI 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 55/219 (25%), Positives = 81/219 (36%), Gaps = 23/219 (10%)

Query: 345 IPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLT 398
           +P GI        + +  N++      +    ++L +L+LH NVL     +    L +L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 399 QRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNK----PSGTMPRQLPRIITLSVLLNLSD 453
           Q  L  N  L ++ P+       L  L   +        G   R L  +  L     L D
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYL----YLQD 138

Query: 454 NLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPST 510
           N L    P +    L NL  L +  N  S  +P     G  SL+ L +  N      P  
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 511 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549
              L  +  L L  NNLS    + L  L  L +L L+ N
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 224 NLPNLRFFIISGNNLTGSLQ-DSLSNATNLQKLDINRNLFSGKVSIN---FGGLQNLSWL 279
            L  L    +S N    S+   +      L  L ++R        +    F GL  L +L
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYL 134

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN 339
            L  N L     +         +   L  L L  NR  +V   +   L  ++  +    N
Sbjct: 135 YLQDNALQALPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQN 187

Query: 340 QISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQ 384
           +++   P    +L  L  L +  N L      A+  L++LQ L L++N   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 17/222 (7%)

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
           +P  +   +   +     N+++    A         +L +  N L     A+   L+ L+
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 158 EINVNGNRLGGRIPS-TRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRNI 212
           +++++ N     +   T   +  L + ++          G+F     +++L+Y+++  N 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNA 140

Query: 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272
              +LP D   +L NL    + GN ++   + +     +L +L +++N  +      F  
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           L  L  L L  NNL             L     L+ L L+ N
Sbjct: 200 LGRLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 43/235 (18%), Positives = 71/235 (30%), Gaps = 40/235 (17%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363
              + + L  NR   V   S       +T +   +N ++         L  L  L +  N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 364 QLAVTI-------LKSLQMLFLHENVLQGTIPS-FLGNLTMLTQRLLEVNDLLGNIPPSI 415
               ++       L  L  L L    LQ  +       L  L    L+ N  L  +P   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-ALQALPDDT 148

Query: 416 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLD 474
              ++L  LT                       L L  N +S   P      L +L  L 
Sbjct: 149 --FRDLGNLTH----------------------LFLHGNRIS-SVPERAFRGLHSLDRLL 183

Query: 475 ISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNL 527
           +  N  +  +          L  L +  N+ +      L+ L+++  L L+ N  
Sbjct: 184 LHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 33/190 (17%)

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
           I  + Q +FLH N +     +       LT   L  N L   I         L LL    
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDA--AAFTGLALLEQ-- 84

Query: 429 NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTT 487
                               L+LSDN             L  L +L +       E+   
Sbjct: 85  --------------------LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 488 L--GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSF 543
           L  G  +L+YL +QDN+   ++P  T   L ++T L L  N +S  +P+     L  L  
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR 181

Query: 544 LNLSYNHFES 553
           L L  N    
Sbjct: 182 LLLHQNRVAH 191

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE-ASNNKL 118
            + I L  N               L  L L +N  +       +  + L + + + N +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSALQEINVNGNRLGGRIPSTR-SH 176
               PA    L +   L++    L+ +L   +   L+ALQ + +  N L   +P      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRD 151

Query: 177 VRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI 232
           + NL    +  N+ S      F     + SL+ + +H+N     +      +L  L    
Sbjct: 152 LGNLTHLFLHGNRISSVPERAF---RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRN 260
           +  NNL+    ++L+    LQ L +N N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 9/205 (4%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           + L    I    +        L  + L +N            L  L+ L L++N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 99  PTN-LSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
                     L         L    P     L   Q L + +N L+     +  +L  L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRNIY 213
            + ++GNR+          + +L    +  N+ +      F    ++  L  +++  N  
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF---RDLGRLMTLYLFANNL 213

Query: 214 HGSLPLDIGVNLPNLRFFIISGNNL 238
             +LP +    L  L++  ++ N  
Sbjct: 214 S-ALPTEALAPLRALQYLRLNDNPW 237

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 41/187 (21%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
            +   L ++ NL              L+ LNL +  L     +             L  L
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--------TLPVLGTL 82

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQLAV- 367
            L  N+    LP     L   +T +    N+++  +P G    L  L  L ++ N+L   
Sbjct: 83  DLSHNQL-QSLPLLGQTL-PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139

Query: 368 -----TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI 422
                T    L+ L L  N L       L  L  L   LL+ N  L  IP        L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLP 198

Query: 423 LLTTRKN 429
                 N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 47/232 (20%), Positives = 74/232 (31%), Gaps = 40/232 (17%)

Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
           +       +  D     A+ P    +L    T +    N +  F    +     L  L +
Sbjct: 7   SKVASHLEVNCDKRNLTAL-P---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 361 EFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG 416
           +  +L        L  L  L L  N LQ ++P     L  LT   +  N  L ++P    
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN-RLTSLPLGAL 120

Query: 417 NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDI 475
               L  L                        L L  N L    P  +      L  L +
Sbjct: 121 R--GLGELQE----------------------LYLKGNELK-TLPPGLLTPTPKLEKLSL 155

Query: 476 SSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
           ++N  + E+P  L  G  +L+ L +Q+NS   +IP        +    L  N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 35/189 (18%)

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
           + K   +L L EN+L     + L   T LTQ  L+  +L       +     L +L T  
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-----TKLQVDGTLPVLGT-- 81

Query: 429 NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488
                               L+LS N L    P     L  L  LD+S N  +  +P   
Sbjct: 82  --------------------LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 489 --GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFL 544
             G   L+ L ++ N    ++P   L+    + +L L+ NNL+  +P  L   L  L  L
Sbjct: 120 LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

Query: 545 NLSYNHFES 553
            L  N   +
Sbjct: 178 LLQENSLYT 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 17/210 (8%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFR-LQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
            ++    +N    +  A +P    +L +    L L+ N         L   + L +    
Sbjct: 8   KVASHLEVNCDKRNLTA-LPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR 174
             +L        G L     L+++ N L+  LP     L AL  ++V+ NRL        
Sbjct: 64  RAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 175 SHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRF 230
             +  L    +  N+      G+         LE + +  N     LP  +   L NL  
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLL---TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 231 FIISGNNLTGSLQDSLSNATNLQKLDINRN 260
            ++  N+L  ++      +  L    ++ N
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 75/388 (19%), Positives = 123/388 (31%), Gaps = 62/388 (15%)

Query: 224 NLPNLRFFIISGNNLTGS----LQDSL-SNATNLQKLDINRNLFSGK----VSINFGGLQ 274
             P L    +  N L       +   L + +  +QKL +     +G     +S     L 
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL---STTM 331
            L  L+L  N LG      L    LL    +LE L L+     A     LA++       
Sbjct: 114 TLQELHLSDNLLGDAGLQLL-CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 332 TGIAFGNNQISG----FIPDGIA-NLVNLNALGVEFNQL----------AVTILKSLQML 376
             +   NN I+      +  G+  +   L AL +E   +           V    SL+ L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 377 FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN---------IPPSIGNCKNLILLTTR 427
            L  N L     + L    +     L    +            +   +   ++L  L+  
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 428 KNKPSGTMPRQLPRII-----TLSVLLNLSDNLLSGHFPAEVGKL----KNLVSLDISSN 478
            N+      R L   +      L  L  +     +    +    +    + L+ L IS+N
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESL-WVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 479 MFSGEIPTTLG------CTSLEYLCMQDNSFT----GSIPSTLSSLKSITELDLSRNNLS 528
                    L        + L  L + D   +     S+ +TL +  S+ ELDLS N L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

Query: 529 GHIPQYL-----ENLSFLSFLNLSYNHF 551
                 L     +    L  L L   ++
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 64/343 (18%), Positives = 102/343 (29%), Gaps = 53/343 (15%)

Query: 250 TNLQKLDINRNLFSGK-VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEV 308
            ++Q LDI     S    +     LQ    + L    L      D+     L     L  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--ALRVNPALAE 60

Query: 309 LVLDSNRFGA----VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
           L L SN  G      +   L   S  +  ++  N  ++     G   L +          
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT---GAGCGVLSS---------- 107

Query: 365 LAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN---------IPPSI 415
             +  L +LQ L L +N+L       L    +  Q  LE   L            +   +
Sbjct: 108 -TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 416 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL----LNLSDNLLS----GHFPAEVGKL 467
               +   LT   N  +    R L + +  S      L L    ++          V   
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 468 KNLVSLDISSNMFSGEIPTTLG------CTSLEYLCMQDNSFT----GSIPSTLSSLKSI 517
            +L  L + SN         L        + L  L + +   T    G +   L + +S+
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 518 TELDLSRNNLSGHIPQYL-----ENLSFLSFLNLSYNHFESKS 555
            EL L+ N L     + L     E    L  L +    F +  
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 66/399 (16%), Positives = 122/399 (30%), Gaps = 79/399 (19%)

Query: 39  LDLRHQSIG----GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFR-----LQNLTL 89
           + L    +       +S  +     L  +NL +N       H V    +     +Q L+L
Sbjct: 33  VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92

Query: 90  TNNYFSGK----IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF-----QLLNIAEN 140
            N   +G     + + L     L +   S+N L       +   L       + L +   
Sbjct: 93  QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

Query: 141 HLRGQ----LPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP 196
            L       L + +      +E+ V+ N +                   G+         
Sbjct: 153 SLSAASCEPLASVLRAKPDFKELTVSNNDIN----------------EAGVRVLCQGLK- 195

Query: 197 INNISSLEYIFIHRN-IYHGSLPLDIGVNL---PNLRFFIISGNNLTGSLQDSLSNA--- 249
            ++   LE + +    +   +   D+   +    +LR   +  N L       L      
Sbjct: 196 -DSPCQLEALKLESCGVTSDNC-RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 250 --TNLQKLDINRNLFSGK----VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC 303
             + L+ L I     + K    +       ++L  L+L  N LG   A  L   TLL   
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL-CETLLEPG 312

Query: 304 TKLEVLVLDSNRFGAVLPFSLANL---STTMTGIAFGNNQISGFIPDGIANLV------- 353
            +LE L + S  F A      +++   +  +  +   NN++      G+  L        
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED---AGVRELCQGLGQPG 369

Query: 354 -NLNALGVEFNQL----------AVTILKSLQMLFLHEN 381
             L  L +    +           +    SL+ L L  N
Sbjct: 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 173 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI 232
           T + + +L    +     + +   I    +++ + I+        P+     L NL    
Sbjct: 39  TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPIS---GLSNLERLR 94

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN 292
           I G ++T     +LS  T+L  LDI+ +     +      L  ++ ++L  N        
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA------ 148

Query: 293 DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG 343
            +  I  L    +L+ L +  +         + +    +  +   +  I G
Sbjct: 149 -ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDF-PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 22/190 (11%)

Query: 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 429
            K+     L ++       + + +LT +T   + V DL G     I    N+  LT    
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNI 76

Query: 430 KPSGTMPRQLPRIITLSVL-----LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEI 484
                          +S L     L +    ++      +  L +L  LDIS +     I
Sbjct: 77  --------HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 485 PTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF 543
            T +     +  + +  N     I   L +L  +  L++  + +  +    +E+   L+ 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 544 LNLSYNHFES 553
           L         
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 31/186 (16%)

Query: 79  GNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIA 138
             +  L  +TL N   +  + T +    N+     +N      +P  I  L   + L I 
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 139 ENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPIN 198
              +      ++  L++L  ++++ +     I +  + +  + S ++  N        I 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA------IT 150

Query: 199 NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDIN 258
           +I  L+                    LP L+   I  + +       + +   L +L   
Sbjct: 151 DIMPLK-------------------TLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAF 189

Query: 259 RNLFSG 264
                G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 20/179 (11%), Positives = 58/179 (32%), Gaps = 20/179 (11%)

Query: 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLGKN 284
              + ++      + +   + +   +L  + +     +    +       N+  L +   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNI 76

Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
           +              ++  + LE L +      +    +L+ L T++T +   ++     
Sbjct: 77  HATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDS 127

Query: 345 IPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENVLQGTIPSFLGNLTMLT 398
           I   I  L  +N++ + +N     I     L  L+ L +  + +       + +   L 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV--HDYRGIEDFPKLN 184

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 30/196 (15%)

Query: 335 AFGNNQISGFIPDGIANLVNLNALGVEFNQL-AVTILKSLQMLFLHENVLQGTIPSFLGN 393
             G +  +      + +L  +    +    L  +    +++ L ++      T  + +  
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI--HATNYNPISG 86

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
           L+ L +  +   D+  +  P++    +L LL                         ++S 
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLL-------------------------DISH 121

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSS 513
           +        ++  L  + S+D+S N    +I        L+ L +Q +         +  
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IED 179

Query: 514 LKSITELDLSRNNLSG 529
              + +L      + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 28/235 (11%), Positives = 67/235 (28%), Gaps = 59/235 (25%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
           +  +         S   +I    + +L+++ L   N+          +T +     ++ L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--------LTGIEYAHNIKDL 71

Query: 310 VLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT 368
            +++       P S L+NL      +      ++      ++ L +              
Sbjct: 72  TINNIHATNYNPISGLSNL----ERLRIMGKDVTSDKIPNLSGLTS-------------- 113

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
               L +L +  +    +I + +  L  +    L  N  + +I P +     L       
Sbjct: 114 ----LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELK------ 162

Query: 429 NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGE 483
                               LN+  + +  +    +     L  L   S    G+
Sbjct: 163 -------------------SLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 6/157 (3%)

Query: 55  GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
             ++ L  I LAN +        +     +++LT+ N + +      +S  SNL +    
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR 174
              +  +    +  L    LL+I+ +     +   I  L  +  I+++ N     I    
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL- 155

Query: 175 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRN 211
             +  L S N+  +     +  I +   L  ++    
Sbjct: 156 KTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 17/117 (14%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 442 IITLSVLLNLSDNLLSGHFPAEV--GKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQ 499
            I  S      + LL     A +   ++ +L  + +++   + ++       +++ L + 
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTIN 74

Query: 500 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556
           +   T    + +S L ++  L +   +++      L  L+ L+ L++S++  +   L
Sbjct: 75  NIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 3/116 (2%)

Query: 53  FVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 112
            +  LS L  + +      ++    +  L  L  L ++++     I T ++    +   +
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG 168
            S N         +  L + + LNI  + +       I +   L ++      +GG
Sbjct: 143 LSYNGAI-TDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 43/250 (17%), Positives = 77/250 (30%), Gaps = 33/250 (13%)

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192
             L      LR     +      L++I ++ N +   I +                    
Sbjct: 33  IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-------------------D 73

Query: 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNL 252
           +F   +N+  L  I I +      +  +   NLPNL++ +IS   +         ++   
Sbjct: 74  VF---SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 253 QKLDINRNLFSGKVSIN-FGGLQ-NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310
             LDI  N+    +  N F GL      L L KN +     +              E+ +
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS------AFNGTQLDELNL 184

Query: 311 LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ--LAVT 368
            D+N    +         +    +     +I      G+ NL  L A      +    + 
Sbjct: 185 SDNNNLEELPNDVFHGA-SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 243

Query: 369 ILKSLQMLFL 378
            L +L    L
Sbjct: 244 KLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 9e-09
 Identities = 39/250 (15%), Positives = 79/250 (31%), Gaps = 26/250 (10%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN-FGGLQ 274
            +P D+  N   LRF       L    + + S   +L+K++I++N     +  + F  L 
Sbjct: 23  EIPSDLPRNAIELRF---VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGI 334
            L  + + K N       +        N   L+ L++ +     +      +    +   
Sbjct: 80  KLHEIRIEKANNLLYINPE-----AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 335 AFGNNQISGFIPDGIANL-VNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTI 387
              N  I     +    L      L +  N +      A    +  ++     N L+   
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 388 PSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSV 447
                  +      +    +  ++P      +NL  L  R           L ++ TL  
Sbjct: 195 NDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARST-------YNLKKLPTLEK 244

Query: 448 LLNLSDNLLS 457
           L+ L +  L+
Sbjct: 245 LVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 8/191 (4%)

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTR 427
           + ++   L      L+            L +  +  ND+L  I   +  N   L  +   
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 428 KNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPT 486
           K      +  +  + +     L +S+  +  H P          V LDI  N+    I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 487 TL--GCTS-LEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLS 542
               G +     L +  N     I ++  +   + EL+LS NN    +P       S   
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 543 FLNLSYNHFES 553
            L++S     S
Sbjct: 206 ILDISRTRIHS 216

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 39/255 (15%), Positives = 75/255 (29%), Gaps = 41/255 (16%)

Query: 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVE-FN 363
              L     +   +   + +     +  I    N +   I   + +NL  L+ + +E  N
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 364 QLAV------TILKSLQMLFLHENVLQGTIPSFL-GNLTMLTQRLLEVNDLLGNIPPSI- 415
            L          L +LQ L +    ++  +P     +        ++ N  +  I  +  
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 416 -GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLD 474
            G     ++L   KN     +         L  L    +N L                 +
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE----------------E 192

Query: 475 ISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 534
           + +++F G        +    L +            L +LK +        NL       
Sbjct: 193 LPNDVFHG-------ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT-- 241

Query: 535 LENLSFLSFLNLSYN 549
           LE L  L   +L+Y 
Sbjct: 242 LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 47/222 (21%), Positives = 71/222 (31%), Gaps = 26/222 (11%)

Query: 345 IPDGIANLVNLNALGVEFNQLAV------TILKSLQMLFLHENVLQGTIPSF-LGNLTML 397
           IP  +    N   L     +L V      +    L+ + + +N +   I +    NL  L
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 398 TQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNK----PSGTMPRQLPRIITLSVLLNLS 452
            +  +E  + L  I P    N  NL  L          P       L       VLL++ 
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-----KVLLDIQ 136

Query: 453 DNLLSGHFPAEV--GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIP 508
           DN+           G     V L ++ N    EI  +   G    E     +N+      
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 509 STLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYN 549
                      LD+SR  +   +P Y LENL  L   +    
Sbjct: 196 DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 32/226 (14%), Positives = 58/226 (25%), Gaps = 8/226 (3%)

Query: 60  LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASN-NK 117
              +       R            L+ + ++ N     I  +  S    L +      N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST--RS 175
           L   +P    NL   Q L I+   ++        +      +++  N     I       
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 176 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235
                +   +  N    +     N + L+ + +  N     LP D+           IS 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNL 281
             +       L N   L+           K       L  L   +L
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASL 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 57/311 (18%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLG 282
            L N        +N+T +   + ++   +  L       +   +I     L NL  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQI 341
            N +          +  L N TK+  L L  N    V   + L ++      +   + QI
Sbjct: 72  DNQITD--------LAPLKNLTKITELELSGNPLKNVSAIAGLQSI----KTLDLTSTQI 119

Query: 342 SGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTML 397
           +   P  +A L NL  L ++ NQ+     +  L +LQ L +     Q +  + L NL+ L
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA--QVSDLTPLANLSKL 175

Query: 398 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLS 457
           T    + N +       I    +L  L                        ++L +N +S
Sbjct: 176 TTLKADDNKI-----SDISPLASLPNLIE----------------------VHLKNNQIS 208

Query: 458 GHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSI 517
              P  +    NL  + +++   +   P       +    ++  S     P+T+S   + 
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTY 265

Query: 518 TELDLSRNNLS 528
              +L+ N  S
Sbjct: 266 ASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 53/279 (18%)

Query: 272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTT 330
            L N   +  GK+N+               +   +  L         +     L NL   
Sbjct: 17  ALANAIKIAAGKSNVTD--------TVTQADLDGITTLSAFGTGVTTIEGVQYLNNL--- 65

Query: 331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGT 386
             G+   +NQI+   P  + NL  +  L +  N L    A+  L+S++ L L     Q T
Sbjct: 66  -IGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST--QIT 120

Query: 387 IPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLS 446
             + L  L+ L    L++N  + NI P +    NL  L+    +           +  L+
Sbjct: 121 DVTPLAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-----------VSDLT 167

Query: 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGS 506
            L                  L  L +L    N  S +I       +L  + +++N  +  
Sbjct: 168 PL----------------ANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDV 210

Query: 507 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 545
            P  L++  ++  + L+   ++     Y  NL   + + 
Sbjct: 211 SP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 51/256 (19%), Positives = 96/256 (37%), Gaps = 21/256 (8%)

Query: 36  VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS 95
            I +     ++         +L  + +++         I   V  L  L  L L +N  +
Sbjct: 21  AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76

Query: 96  GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA 155
                 L   + + + E S N L  ++ + I  L   + L++    +    P  +  LS 
Sbjct: 77  D--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG 215
           LQ + ++ N++     S  + + NL   ++G  Q S +  P+ N+S L  +    N    
Sbjct: 131 LQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD 187

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
             PL    +LPNL    +  N ++      L+N +NL  + +     +   +       N
Sbjct: 188 ISPLA---SLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT---NQPVFYNNN 239

Query: 276 LSWLNLGKNNLGTRTA 291
           L   N+ K   G   A
Sbjct: 240 LVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 31/246 (12%)

Query: 322 FSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLF 377
           F    L      IA G + ++  +    A+L  +  L      +     V  L +L  L 
Sbjct: 13  FPDPAL-ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLE 69

Query: 378 LHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPR 437
           L +N +  T  + L NLT +T+  L  N L      +I   +++  L             
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTST-------- 117

Query: 438 QLPRIITLSVL-----LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTS 492
           Q+  +  L+ L     L L  N ++    + +  L NL  L I +   S ++      + 
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DLTPLANLSK 174

Query: 493 LEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
           L  L   DN  +  I   L+SL ++ E+ L  N +S   P  L N S L  + L+     
Sbjct: 175 LTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

Query: 553 SKSLFV 558
           ++ +F 
Sbjct: 231 NQPVFY 236

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 45/224 (20%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGN 393
              I+   PD    L N   +    + +        L  +  L      +  T    +  
Sbjct: 6   PTAINVIFPD--PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEGVQY 61

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL--LNL 451
           L  L    L+ N +  ++ P + N   +  L    N         +  I  L  +  L+L
Sbjct: 62  LNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-----NVSAIAGLQSIKTLDL 114

Query: 452 SDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTL 511
           +   ++      +  L NL  L +  N  +  I    G T+L+YL + +   +   P  L
Sbjct: 115 TSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP--L 169

Query: 512 SSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKS 555
           ++L  +T L    N +S   P  L +L  L  ++L  N     S
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 52  PFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111
             V  L+ L  + L +N    ++   + NL ++  L L+ N    K  + ++   ++   
Sbjct: 57  EGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPL--KNVSAIAGLQSIKTL 112

Query: 112 EASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP 171
           + ++ ++   +P  +  L   Q+L +  N +    P  +  L+ LQ +++   ++     
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV--SDL 166

Query: 172 STRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF 231
           +  +++  L +     N+ S    P+ ++ +L  + +  N      PL    N  NL   
Sbjct: 167 TPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSPLA---NTSNLFIV 222

Query: 232 IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272
            ++   +T       +N      +           +I+  G
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
            + +KLD+  N  S   S  F  L  L  L L  N L T  A       +      LE L
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETL 90

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL--- 365
            +  N+    LP  + +    +  +    NQ+   +P  +  +L  L  L + +N+L   
Sbjct: 91  WVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL 148

Query: 366 ---AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
                  L SL+ L L+ N L+         LT L    L+ N L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGS 506
           L+L  N LS        +L  L  L ++ N     +P  +     +LE L + DN    +
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 507 IPS-TLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYNHFES 553
           +P      L ++ EL L RN L   +P  + ++L+ L++L+L YN  +S
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS 147

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 53/234 (22%), Positives = 85/234 (36%), Gaps = 43/234 (18%)

Query: 302 NCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVE 361
           N  K  V    S +  A+ P   +N+      +   +N++S         L  L  L + 
Sbjct: 15  NNNKNSV-DCSSKKLTAI-P---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69

Query: 362 FNQL------AVTILKSLQMLFLHENVLQGTIPS-FLGNLTMLTQRLLEVNDLLGNIPPS 414
            N+L          LK+L+ L++ +N LQ  +P      L  L +  L+ N  L ++PP 
Sbjct: 70  DNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPR 127

Query: 415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSL 473
           +    +L  LT                       L+L  N L    P  V  KL +L  L
Sbjct: 128 V--FDSLTKLTY----------------------LSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 474 DISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
            + +N     +P       T L+ L + +N           SL+ +  L L  N
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 46/185 (24%), Positives = 60/185 (32%), Gaps = 8/185 (4%)

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTR 427
           I    + L L  N L          LT L    L  N L   +P  I    KNL  L   
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93

Query: 428 KNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPT 486
            NK    +P  +   +     L L  N L    P  V   L  L  L +  N     +P 
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 487 TL--GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 544
            +    TSL+ L + +N            L  +  L L  N L        ++L  L  L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 545 NLSYN 549
            L  N
Sbjct: 211 QLQEN 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 49/163 (30%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
            + +KLD+     +      F GL  L+WLNL  N L T +A   D +      T+L  L
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTL 88

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL--- 365
            L +N+  A LP  + +  T +  +  G NQ+   +P G+   L  L  L +  NQL   
Sbjct: 89  GLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSI 146

Query: 366 ---AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN 405
              A   L +LQ L L  N LQ         L  L    L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
           TN Q L ++ N  +      F  L NL  L LG N LG       D      + T+L VL
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD------SLTQLTVL 93

Query: 310 VLDSNRFGAVLP---F-SLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
            L +N+    LP   F  L +L      +    N+++  +P GI  L +L  L ++ NQL
Sbjct: 94  DLGTNQLTV-LPSAVFDRLVHL----KELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

Query: 366 ------AVTILKSLQMLFLHEN 381
                 A   L SL   +L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 26/180 (14%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLG 282
            L N     +   ++T     S    + +Q  + + +      S+       NL  L+L 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS 342
            N +          ++ L + TKLE L ++ NR   +     A LS     +   NN++ 
Sbjct: 72  HNQISD--------LSPLKDLTKLEELSVNRNRLKNLNGIPSACLSR----LFLDNNELR 119

Query: 343 GFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLT 398
               D + +L NL  L +  N+L     +  L  L++L LH N +  T    L  L  + 
Sbjct: 120 DT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVN 175

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 39/208 (18%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGN 393
              I+   PD    L N     +    +    +   L  +Q      + +     + +  
Sbjct: 6   PTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLAGMQF 61

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
            T L +  L  N +  ++ P + +   L  L+  +N+           +  L     L +
Sbjct: 62  FTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL----FLDN 115

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSS 513
           N L       +  LKNL  L I +N     I      + LE L +  N  T +    L+ 
Sbjct: 116 NELRD--TDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEIT-NT-GGLTR 170

Query: 514 LKSITELDLSRNNLSGHIPQYLENLSFL 541
           LK +  +DL+         +Y   L   
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 45/216 (20%)

Query: 100 TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI 159
                 +N VK       +          L   Q  N   ++++    A +   + L+E+
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS--LAGMQFFTNLKEL 68

Query: 160 NVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPL 219
           +++ N++     S    +  L   +V  N+       + N++ +                
Sbjct: 69  HLSHNQI--SDLSPLKDLTKLEELSVNRNR-------LKNLNGIP--------------- 104

Query: 220 DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWL 279
                   L    +  N L  +  DSL +  NL+ L I  N     +    G L  L  L
Sbjct: 105 -----SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVL 155

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR 315
           +L  N +             LT   K+  + L   +
Sbjct: 156 DLHGNEITN--------TGGLTRLKKVNWIDLTGQK 183

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 55/289 (19%)

Query: 246 LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK 305
                   K ++ +   +  V+ N   L ++  +    +++ +        +  +     
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--------VQGIQYLPN 69

Query: 306 LEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364
           +  L L+ N+   + P + L NL      +    N++       + +L  L +L +E N 
Sbjct: 70  VTKLFLNGNKLTDIKPLANLKNL----GWLFLDENKVKDL--SSLKDLKKLKSLSLEHNG 123

Query: 365 L----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKN 420
           +     +  L  L+ L+L  N +  T  + L  LT L    LE N +       I     
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-----DIVPLAG 176

Query: 421 LILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMF 480
           L  L                        L LS N +S      +  LKNL  L++ S   
Sbjct: 177 LTKLQN----------------------LYLSKNHISD--LRALAGLKNLDVLELFSQEC 212

Query: 481 SGEIPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528
             +             +   D S     P  +S      + ++  +   
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 54/263 (20%), Positives = 90/263 (34%), Gaps = 45/263 (17%)

Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIA 350
             +  I       +     L        +  + L ++      I   N+ I      GI 
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSI----DQIIANNSDIKSV--QGIQ 65

Query: 351 NLVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND 406
            L N+  L +  N+L     +  LK+L  LFL EN +     S L +L  L    LE N 
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNG 123

Query: 407 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGK 466
           +  +I   + +   L  L    NK           I  ++VL                 +
Sbjct: 124 I-SDING-LVHLPQLESLYLGNNK-----------ITDITVL----------------SR 154

Query: 467 LKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
           L  L +L +  N  S +I    G T L+ L +  N  +  +   L+ LK++  L+L    
Sbjct: 155 LTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQE 211

Query: 527 LSGHIPQYLENLSFLSFLNLSYN 549
                  +  NL   + +  +  
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 41/260 (15%), Positives = 88/260 (33%), Gaps = 49/260 (18%)

Query: 100 TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI 159
            +    +  +K       +          L     +    + ++      I  L  + ++
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 160 NVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPL 219
            +NGN+L        ++++NL    +  N+       + ++SSL+               
Sbjct: 74  FLNGNKL--TDIKPLANLKNLGWLFLDENK-------VKDLSSLK--------------- 109

Query: 220 DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWL 279
               +L  L+   +  N ++  + + L +   L+ L +  N  +  ++     L  L  L
Sbjct: 110 ----DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTL 161

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGN 338
           +L  N +          I  L   TKL+ L L  N    +   + L NL      +   +
Sbjct: 162 SLEDNQISD--------IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV----LELFS 209

Query: 339 NQISGFIPDGIANLVNLNAL 358
            +      +  +NLV  N +
Sbjct: 210 QECLNKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115
             +     NL   S    +      L  +  +   N+     +   +    N+ K   + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS 175
           NKL    P  + NL     L + EN ++    +S+ +L  L+ +++  N +     +   
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGI--SDINGLV 131

Query: 176 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235
           H+  L S  +G N+ +     ++ ++ L+ + +  N     +PL     L  L+   +S 
Sbjct: 132 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLYLSK 187

Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
           N+++  L  +L+   NL  L++       K   +   L   + +     +L
Sbjct: 188 NHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 50/217 (23%), Positives = 75/217 (34%), Gaps = 42/217 (19%)

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLHENVLQGTIPSFLGN 393
              I     D            ++   +   +    L S+  +  + +         +  
Sbjct: 11  PTPIKQIFSD--DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQGIQY 66

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
           L  +T+  L  N  L +I P + N KNL  L   +NK           +  LS L +L  
Sbjct: 67  LPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-----------VKDLSSLKDL-- 111

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSS 513
                         K L SL +  N  S +I   +    LE L + +N  T    + LS 
Sbjct: 112 --------------KKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKIT--DITVLSR 154

Query: 514 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550
           L  +  L L  N +S  I   L  L+ L  L LS NH
Sbjct: 155 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 32/195 (16%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLFSGKVSIN---FG 271
           ++P  +      L    +S NNL+    + + +  TNL  L ++ N  +    I+   F 
Sbjct: 32  NVPQSLPSYTALLD---LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFV 85

Query: 272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331
            + NL +L+L  N+L T             +   LEVL+L +N    V   +  ++   +
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFS------DLQALEVLLLYNNHIVVVDRNAFEDM-AQL 138

Query: 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFL 391
             +    NQIS F  + I +   L                 L +L L  N L+    + L
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKL---------------PKLMLLDLSSNKLKKLPLTDL 183

Query: 392 GNLTMLTQRLLEVND 406
             L    +  L +++
Sbjct: 184 QKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 434 TMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GC 490
            +P+ LP    L   L+LS N LS         +L NL SL +S N  +  I +      
Sbjct: 32  NVPQSLPSYTAL---LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 491 TSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSY 548
            +L YL +  N    ++     S L+++  L L  N++   + +   E+++ L  L LS 
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 549 NHFES 553
           N    
Sbjct: 146 NQISR 150

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 449 LNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTG 505
           L LS N L+    +E    + NL  LD+SSN     +   L     +LE L + +N    
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV- 125

Query: 506 SIPS-TLSSLKSITELDLSRNNLSGHIP----QYLENLSFLSFLNLSYNHFES 553
            +       +  + +L LS+N +S   P    +    L  L  L+LS N  + 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 34/189 (17%)

Query: 133 QLLNIAENHLRGQLPASI--GNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190
            LL+++ N+L  +L A      L+ L  + ++ N L   I S                  
Sbjct: 42  ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISS------------------ 81

Query: 191 SGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNAT 250
              F     + +L Y+ +  N  H +L   +  +L  L   ++  N++    +++  +  
Sbjct: 82  -EAF---VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 251 NLQKLDINRNL---FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLE 307
            LQKL +++N    F  ++  +   L  L  L+L  N L      DL  +          
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV----KN 192

Query: 308 VLVLDSNRF 316
            L L +N  
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 449 LNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTG 505
           L+LS N L       +   L+ L  L + +N     +          L+ L +  N  + 
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 506 SIP----STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550
             P       + L  +  LDLS N L       L+ L       L  ++
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 45/238 (18%)

Query: 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHRN 211
            + ++++ N L      +      L   ++   +      G +    ++S L  + +  N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGN 86

Query: 212 IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL-SNATNLQKLDINRN-LFSGKVSIN 269
               SL L     L +L+  +    NL  SL++    +   L++L++  N + S K+   
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLST 329
           F  L NL  L+L  N + +    DL                             L  +  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLR---------------------------VLHQMPL 177

Query: 330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHEN 381
               +    N ++ FI  G    + L  L ++ NQL          L SLQ ++LH N
Sbjct: 178 LNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 46/254 (18%), Positives = 78/254 (30%), Gaps = 55/254 (21%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEF 362
              + L L  N    +  +S  +    +  +     +I   I DG   +L +L+ L +  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 363 NQL------AVTILKSLQMLFLHENVLQGTIPSFL-GNLTMLTQRLLEVNDLLGNIPPSI 415
           N +      A + L SLQ L   E  L  ++ +F  G+L  L +  +  N +  +     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFK-LP 142

Query: 416 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDI 475
               NL  L                        L+LS N +          L+ L  + +
Sbjct: 143 EYFSNLTNLEH----------------------LDLSSNKIQ-SIYCTD--LRVLHQMPL 177

Query: 476 SSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL 535
            +                  L +  N     I         + EL L  N L        
Sbjct: 178 LNL----------------SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIF 220

Query: 536 ENLSFLSFLNLSYN 549
           + L+ L  + L  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 30/221 (13%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFL 378
            NL  +   +    N +         +   L  L +   ++      A   L  L  L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTMPR 437
             N +Q         L+ L + +    +L  ++     G+ K L  L    N        
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-------- 134

Query: 438 QLPRIITLSV--------LLNLSDNLLSGHFPAEV-GKLKNL----VSLDISSNMFSGEI 484
            +                 L+LS N +           L  +    +SLD+S N  +   
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 485 PTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
           P       L+ L +  N            L S+ ++ L  N
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 449 LNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTG 505
           L+LS   +           L +L +L ++ N     +      G +SL+ L   + +   
Sbjct: 57  LDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA- 113

Query: 506 SIPS-TLSSLKSITELDLSRNNL-SGHIPQYLENLSFLSFLNLSYNHFES 553
           S+ +  +  LK++ EL+++ N + S  +P+Y  NL+ L  L+LS N  +S
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 32/231 (13%)

Query: 60  LRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNK 117
            ++++L+ N  R  +      +   LQ L L+       I        S+L     + N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHV 177
           +   +      L   Q L   E +L       IG+L  L+E+NV  N +           
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI----------- 136

Query: 178 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFI----I 233
           ++          FS +       ++LE++ +  N    S+       L  +        +
Sbjct: 137 QSFKLPEY----FSNL-------TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184

Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
           S N +   +Q        L++L ++ N         F  L +L  + L  N
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTGS 506
           L+LS N L             L  LD+S       I        + L  L +  N    S
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 507 IPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
           +     S L S+ +L     NL+      + +L  L  LN+++N  +S
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 32/200 (16%)

Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ--DSLSNATNL 252
              N ++S++ I  + +       +    N+  L    + GN L   +     L   TNL
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA---LGGNKLH-DISALKEL---TNL 87

Query: 253 QKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD 312
             L +  N      +  F  L NL  L L +N L +      D +T       L  L L 
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------NLTYLNLA 141

Query: 313 SNRFGAVLP---F-SLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL-- 365
            N+  + LP   F  L NL    T +    NQ+   +P+G+   L  L  L +  NQL  
Sbjct: 142 HNQLQS-LPKGVFDKLTNL----TELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 366 ----AVTILKSLQMLFLHEN 381
                   L SLQ ++LH+N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 23/169 (13%)

Query: 248 NATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLE 307
              ++ ++  N +       I    L N+ +L LG N L   +A            T L 
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHDISALK--------ELTNLT 88

Query: 308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN-LVNLNALGVEFNQLA 366
            L+L  N+  + LP  + +  T +  +    NQ+   +PDG+ + L NL  L +  NQL 
Sbjct: 89  YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 367 VT------ILKSLQMLFLHENVLQGTIPS--FLGNLTMLTQRLLEVNDL 407
                    L +L  L L  N LQ ++P   F   LT L    L  N L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF-DKLTQLKDLRLYQNQL 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 35/231 (15%)

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192
           Q L + E HLR     +  NL  +  I V+ +    ++ S               + F  
Sbjct: 34  QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES---------------HSFYN 78

Query: 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD--SLSNAT 250
           +       S + +I I        +  D    LP L+F  I    L     D   + +  
Sbjct: 79  L-------SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTD 130

Query: 251 NLQKLDINRNLFSGKVSIN-FGGLQNLS-WLNLGKNNLGTRTANDLDFITLLTNCTKLEV 308
               L+I  N +   + +N F GL N +  L L  N   +             N TKL+ 
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-------NGTKLDA 183

Query: 309 LVLDSNRFGAVLP-FSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
           + L+ N++  V+   +   + +  + +      ++     G+ +L  L A 
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 12/195 (6%)

Query: 368 TILKSLQMLFLHENVLQGTIPSF-LGNLTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLT 425
           ++  S Q L L E  L+ TIPS    NL  +++  + ++  L  +      N   +  + 
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 426 TRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE--VGKLKNLVSLDISSNMFSGE 483
            R  +    +     + + L   L + +  L   FP    V        L+I+ N +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 484 IPTTL--GCTS-LEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENL- 538
           IP     G  +    L + +N FT S+     +   +  + L++N     I +     + 
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 539 SFLSFLNLSYNHFES 553
           S  S L++S     +
Sbjct: 205 SGPSLLDVSQTSVTA 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 64/405 (15%), Positives = 118/405 (29%), Gaps = 109/405 (26%)

Query: 220 DIGVNLPN-----LRFFII---SGNN-----LTGSLQDS---LSNATNLQKLD--INRNL 261
            I +   +     LR F              +   L+ +   L +    ++    +   +
Sbjct: 53  HI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 262 FSGKVSINFGGLQNLSWLNLGK----NNLGTRTA----NDLDFITL--LTNCTK--LEVL 309
           +  +    +   Q  +  N+ +      L  R A         + +  +    K  + + 
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI 369
           V  S +    + F +  L+         N       P+ +  L  L  L  + +    + 
Sbjct: 170 VCLSYKVQCKMDFKIFWLN-------LKNCNS----PETV--LEMLQKLLYQIDPNWTSR 216

Query: 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLL---EVNDLLGNIPPSI-----GNCKNL 421
                 + L  + +Q  +   L +       LL    V +               +CK  
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQN------AKAWNAFNLSCK-- 267

Query: 422 ILLTTR-------------KNKPSGTMPRQLPRIITLSVL---LNLSDNLLSGHFPAEVG 465
           ILLTTR              +         L      S+L   L+     L    P EV 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVL 323

Query: 466 KLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITEL----- 520
                    +S  + +  I   L  T   +  +  +  T  I S+L+ L+   E      
Sbjct: 324 TTNPRR---LS--IIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFD 376

Query: 521 DLS--RNNLSGHIPQYLENLSFLSFLNLSY-------NHFESKSL 556
            LS    +   HIP  L  LS + + ++         N     SL
Sbjct: 377 RLSVFPPSA--HIPTIL--LSLI-WFDVIKSDVMVVVNKLHKYSL 416

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 23/143 (16%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
                LD+  N      +  F  L +L+ L LG N L +      + +      T L  L
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL------TSLTYL 81

Query: 310 VLDSNRFGAVLP---F-SLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQ 364
            L +N+  + LP   F  L  L      +A   NQ+   +PDG+   L  L  L +  NQ
Sbjct: 82  NLSTNQLQS-LPNGVFDKLTQL----KELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQ 135

Query: 365 L------AVTILKSLQMLFLHEN 381
           L          L SLQ ++LH+N
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDN 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 199 NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDIN 258
             +++  + +     +      +     NL F  +    L  S+  +L     L+KL+++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 259 RNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
            N   G + +    L NL+ LNL  N L      D+  +  L     L+ L L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 466 KLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
            ++ LV LD   +        T    +LE+L + +     S+ S L  L  + +L+LS N
Sbjct: 25  AVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSEN 81

Query: 526 NLSGHIPQYLENLSFLSFLNLSYNHFES 553
            + G +    E L  L+ LNLS N  + 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKD 109

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 63/314 (20%)

Query: 36  VIGLDLRHQSIGG----FLSPFVGNLSFLRSINLANNS---FRAEIPHEVGNLFR----- 83
           V  + L   +IG     +LS  + +   L     ++      + EIP  +  L +     
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 84  --LQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137
             L  + L++N F       +   LS+ + L      NN L  ++ A+I   L+      
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ------ 147

Query: 138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI 197
                   +     N   L+ I    NRL                 N  + +++  F   
Sbjct: 148 -----ELAVNKKAKNAPPLRSIICGRNRLE----------------NGSMKEWAKTFQ-- 184

Query: 198 NNISSLEYIFIHRN-IYHGSLPLDIGVNL---PNLRFFIISGNNLTG----SLQDSLSNA 249
            +   L  + + +N I    +   +   L     L+   +  N  T     +L  +L + 
Sbjct: 185 -SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 250 TNLQKLDINRNLFSGK------VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC 303
            NL++L +N  L S +       + +      L  L L  N +       L    +    
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKM 302

Query: 304 TKLEVLVLDSNRFG 317
             L  L L+ NRF 
Sbjct: 303 PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 68/346 (19%)

Query: 233 ISGNNLTG----SLQDSLSNATNLQKLDINRNLFSGKVSINFG----GLQNLSWLNLGKN 284
           +  + +T     S+   L    +++++ ++ N    + +          ++L        
Sbjct: 11  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 70

Query: 285 NLGTRTANDLD----FITLLTNCTKLEVLVLDSNRFGAVLPFSLANL---STTMTGIAFG 337
             G       +     +  L  C KL  + L  N FG      L +     T +  +   
Sbjct: 71  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTML 397
           NN +    P   A +    AL              L+ +    N L+             
Sbjct: 131 NNGLG---PQAGAKI--ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 398 TQRLLEVNDLLGNIPPSIGN--CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 455
            + L  V  ++ N    I     ++L+L      +              L VL +L DN 
Sbjct: 186 HRLLHTV-KMVQN---GIRPEGIEHLLLEGLAYCQ-------------ELKVL-DLQDNT 227

Query: 456 LSG----HFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSL-EYLCMQDNSFTGSIPST 510
            +          +    NL  L ++  + S       G  ++ +     +N         
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSAR-----GAAAVVDAFSKLEN--------- 273

Query: 511 LSSLKSITELDLSRNNLSG----HIPQYL-ENLSFLSFLNLSYNHF 551
                 +  L L  N +       +   + E +  L FL L+ N F
Sbjct: 274 ----IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 55/308 (17%), Positives = 90/308 (29%), Gaps = 53/308 (17%)

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG----AVLPFSLANLSTTM 331
           +   +L  + + T     +    +L     ++ +VL  N  G      L  ++A+    +
Sbjct: 6   IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDL 62

Query: 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGT----I 387
               F +        +    L  L          A+     L  + L +N    T    +
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQ--------ALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 388 PSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI-LLTTRKNKPSGTMPRQLPRIITLS 446
             FL   T L    L  N L             +   L              L       
Sbjct: 115 IDFLSKHTPLEHLYLHNNGL------GPQAGAKIARALQELAVNKKAKNAPPLRS----- 163

Query: 447 VLLNLSDNLLSG----HFPAEVGKLKNLVSLDISSNMFSGE-IPTTLG-----CTSLEYL 496
             +    N L       +       + L ++ +  N    E I   L      C  L+ L
Sbjct: 164 --IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 497 CMQDNSFTG----SIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSF--LSFLNL 546
            +QDN+FT     ++   L S  ++ EL L+   LS      +      L    L  L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 547 SYNHFESK 554
            YN  E  
Sbjct: 282 QYNEIELD 289

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 219 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSW 278
             +      L F       LT S+ + L     L+KL+++ N  SG + +      NL+ 
Sbjct: 35  EGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92

Query: 279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
           LNL  N +      DL  I  L     L+ L L + 
Sbjct: 93  LNLSGNKI-----KDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 466 KLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525
            +K LV LD S +        T     LE+L   +   T SI + L  L  + +L+LS N
Sbjct: 18  DVKELV-LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDN 74

Query: 526 NLSGHIPQYLENLSFLSFLNLSYNHFES 553
            +SG +    E    L+ LNLS N  + 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKD 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 220 DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWL 279
           ++G  L        S N +   L         L+ L +N N            L +L+ L
Sbjct: 36  NLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
            L  N+L      +L  +  L +   L  L +  N
Sbjct: 94  ILTNNSL-----VELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 4/105 (3%)

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIP 508
           + L+  L+     A+         LD+                  + +   DN     + 
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL- 57

Query: 509 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
                L+ +  L ++ N +        + L  L+ L L+ N    
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 5e-06
 Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 33/202 (16%)

Query: 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 432
              +  ++         F G++    Q +  +     ++ P +     L  L  +     
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE--QVDLSPVLDAMPLLNNLKIKGTNNL 185

Query: 433 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV------GKLKNLVSLDI---SSNMFSGE 483
               +  P + +L         ++SG  P  V        L NL  L +     +     
Sbjct: 186 SIGKKPRPNLKSL--------EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237

Query: 484 IPTTL-------GCTSLEYLCMQDNSFTGSIPSTLSS---LKSITELDLSRNNLSG---- 529
                          +L++L + D      +         L  +  +D+S   L+     
Sbjct: 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297

Query: 530 HIPQYLENLSFLSFLNLSYNHF 551
            +  +++ +  L F+N+ YN+ 
Sbjct: 298 LLLDHVDKIKHLKFINMKYNYL 319

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 29/167 (17%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ 274
            +P  I      LR    + N  T             L+K++ + N  +      F G  
Sbjct: 25  KIPEHIPQYTAELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGI 334
            ++ + L  N L                   L+ L+L SNR   V   S   L +++  +
Sbjct: 82  GVNEILLTSNRLENVQHKMFK------GLESLKTLMLRSNRITCVGNDSFIGL-SSVRLL 134

Query: 335 AFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHEN 381
           +  +NQI+  +  G             F+      L SL  L L  N
Sbjct: 135 SLYDNQIT-TVAPGA------------FDT-----LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 45/161 (27%)

Query: 250 TNLQKLDINRNLFSG-KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEV 308
               +L +N N F+  + +  F  L  L  +N   N +                 T +E 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-----------------TDIEE 74

Query: 309 LVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL-- 365
              +            + +      I   +N++   +   +   L +L  L +  N++  
Sbjct: 75  GAFEG----------ASGV----NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITC 119

Query: 366 ----AVTILKSLQMLFLHENVLQGTIP----SFLGNLTMLT 398
               +   L S+++L L++N +  T+       L +L+ L 
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 307 EVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL 365
             L L++N F  +    +      +  I F NN+I+  I +G       +N + +  N+L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRL 93

Query: 366 AV------TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
                     L+SL+ L L  N +          L+ +    L  N +
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 224 NLPNLRFFIISGNNLTGSLQD-SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLG 282
              NL    I        L+   L     L+ L I ++         F     LS LNL 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316
            N L   + +      L      L+ LVL  N  
Sbjct: 89  FNAL--ESLSWKTVQGL-----SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 461 PAEVGKLKNLVSLDISSNMFSGEIPTT--LGCTSLEYLCMQDNSFTGSIPSTLSSLKSIT 518
              +   +NL  L I +      +      G   L  L +  +      P        ++
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 519 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
            L+LS N L     + ++ LS L  L LS N  
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 483 EIPTTL-GCTSLEYLCMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQY-LENLS 539
           +    L G  +L  L +++      +    L  L  +  L + ++ L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 540 FLSFLNLSYNHFES 553
            LS LNLS+N  ES
Sbjct: 81  RLSRLNLSFNALES 94

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 57/358 (15%), Positives = 111/358 (31%), Gaps = 71/358 (19%)

Query: 224 NLPNLRFFIISGNNLTGS----LQDSL-SNATNLQKLDINRNLFSGKVSINFGGL----- 273
               +    +S NNL       L  +  +   ++  L+++ N    K S     +     
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAV----LPFSLANLST 329
            N++ LNL  N L  +++++L   TL      + VL L  N F +        + +NL  
Sbjct: 80  ANVTSLNLSGNFLSYKSSDEL-VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 330 TMTGIAFGNNQISGFIPDGIANL--------VNLNALGVEFNQLA-----------VTIL 370
           ++T +    N +          L         N+N+L +  N LA            +I 
Sbjct: 139 SITSLNLRGNDLG---IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 371 KSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK 430
            S+  L L  N+L     + L  +       +   +L  N        +NL LL      
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-LENLKLL------ 248

Query: 431 PSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE-------VGKLKNLVSLDISSNMFSGE 483
                      +  L  +  L  +++      +          ++ ++ +D +       
Sbjct: 249 --------KDSLKHLQTV-YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

Query: 484 -----------IPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530
                      +       SL   C+       +    L+    + E   +   L  H
Sbjct: 300 HSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 58/352 (16%), Positives = 113/352 (32%), Gaps = 69/352 (19%)

Query: 236 NNLTGS-----LQDSLSNATNLQKLDINRNLFSGKVSINFGGL-----QNLSWLNLGKNN 285
             LT       +++  S    +  LD++ N      ++           +++ LNL  N+
Sbjct: 3   YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 286 LGTRTANDLDFITLLTNCTKLEVLVLDSNRFG----AVLPFSLANLSTTMTGIAFGNNQI 341
           LG + +++L    L      +  L L  N         L  +LA +  T+T +  G N  
Sbjct: 63  LGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 342 SGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRL 401
           S       +      A           +  S+  L L  N L       L  +       
Sbjct: 122 S---SKSSSEFKQ--AFS--------NLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 402 LEVNDLLGNIPPSIGN--CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH 459
           +   +L GN   ++ +  C  L                      +++ L +LS NLL   
Sbjct: 169 VNSLNLRGN---NLASKNCAELAKFLASIPA-------------SVTSL-DLSANLLGLK 211

Query: 460 FPAEVGKL-----KNLVSLDISSNMFSGEIPTTLG-----CTSLEYLCMQDNSFTG---- 505
             AE+  +      ++VSL++  N   G     L         L+ + +  +        
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 506 ---SIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSF-LSFLNLSYN 549
              ++ +   +++ I  +D +   +       I   +  LS      +L   
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 15/103 (14%)

Query: 307 EVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL 365
             L LD N+F  ++P  L+N    +T I   NN+IS  + +   +N+  L  L + +N+L
Sbjct: 34  TELYLDGNQF-TLVPKELSNY-KHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

Query: 366 ------AVTILKSLQMLFLHENVLQGTIP--SF--LGNLTMLT 398
                     LKSL++L LH N +   +P  +F  L  L+ L 
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLA 132

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 40/139 (28%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
            ++ +L ++ N F+  V       ++L+ ++L  N +                 + L   
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-----------------STLSNQ 72

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL--- 365
                        ++  L T    +    N++   IP      L +L  L +  N +   
Sbjct: 73  SFS----------NMTQLLT----LILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDISVV 117

Query: 366 ---AVTILKSLQMLFLHEN 381
              A   L +L  L +  N
Sbjct: 118 PEGAFNDLSALSHLAIGAN 136

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 27/166 (16%), Positives = 66/166 (39%), Gaps = 28/166 (16%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
            +P ++   +  +R      N +      + S    L+++D++ N  S      F GL++
Sbjct: 25  EIPTNLPETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
           L+ L L  N +     +  +          L++L+L++N+   +   +  +L   +  ++
Sbjct: 82  LNSLVLYGNKITELPKSLFE------GLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLS 134

Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHEN 381
             +N++   I  G                   + L+++Q + L +N
Sbjct: 135 LYDNKLQ-TIAKG-----------------TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 449 LNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTG 505
           ++LS+N +S     +    L++L SL +  N  + E+P +L  G  SL+ L +  N    
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 506 SIPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
            +       L ++  L L  N L          L  +  ++L+ N F 
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 13/103 (12%)

Query: 307 EVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL 365
             L+L+ N  G +    L      +  +    NQ++G I         ++  L +  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 366 ------AVTILKSLQMLFLHENVLQGTIP--SF--LGNLTMLT 398
                     L  L+ L L++N +   +   SF  L +LT L 
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLN 132

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 39/139 (28%)

Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
           ++  +L++  N         F  L  L+ L+L +N +                   L   
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-----------------QSLPDG 70

Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI-ANLVNLNALGVEFNQL--- 365
           V D           L  L    T +    N++   +P+G+   L  L  L ++ NQL   
Sbjct: 71  VFD----------KLTKL----TILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSV 115

Query: 366 ---AVTILKSLQMLFLHEN 381
                  L SLQ ++LH N
Sbjct: 116 PDGIFDRLTSLQKIWLHTN 134

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 52/356 (14%), Positives = 113/356 (31%), Gaps = 47/356 (13%)

Query: 221 IGVNLPNLRFFIISG--NNLT-GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS 277
                 +L    IS   + ++  +L+  ++   NL+ L +NR +   K++        L 
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 278 WLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
            L  G      R          L+ C +L  L    +   A LP ++ ++ + +T +   
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLS 297

Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTML 397
              +       +  L+                   LQ L++ + +    +         L
Sbjct: 298 YATVQS---YDLVKLLCQ--------------CPKLQRLWVLDYIEDAGLEVLASTCKDL 340

Query: 398 TQ-RLLEVNDLLGNIPPSIG---------NCKNLILLTTRKNKPSG----TMPRQLPRII 443
            + R+      +     ++           C  L  +     + +     T+ R  P + 
Sbjct: 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400

Query: 444 TLSV-------LLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG--CTSLE 494
              +          L+   L   F A V   K+L  L + S + + ++   +G     +E
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTYAKKME 459

Query: 495 YLCMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSG-HIPQYLENLSFLSFLNLSY 548
            L +     +   +   LS   S+ +L++         +      L  +  L +S 
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 37/283 (13%), Positives = 79/283 (27%), Gaps = 62/283 (21%)

Query: 50  LSPFVGNLSFLRSINLANNSFRAEIPHEVGNLF----RLQNLTLTNNYFSGKIPTNLSRC 105
           L+        L+ ++L  +       H + +       L +L             N+S  
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL-------------NISCL 194

Query: 106 SNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGN- 164
           ++ V F A                    L  +                  L+ + +N   
Sbjct: 195 ASEVSFSA--------------------LERLVT------------RCPNLKSLKLNRAV 222

Query: 165 ------RLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
                  L  R P          +  V  + +SG+   ++    L  +    +     LP
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 219 LDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS 277
             +      L    +S   +    L   L     LQ+L +   +    + +     ++L 
Sbjct: 283 A-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341

Query: 278 WLNLGKNNLGTRTAN----DLDFITLLTNCTKLEVLVLDSNRF 316
            L +  +       N    +   +++   C KLE ++    + 
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT 301
           +  +LS     + L ++ N    K+S +  G++NL  L+LG+N +  +  N      L  
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI-KKIEN------LDA 90

Query: 302 NCTKLEVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIP-DGIANLVNLNALG 359
               LE L +  N+  ++     L NL      +   NN+I+ +   D +A L  L  L 
Sbjct: 91  VADTLEELWISYNQIASLSGIEKLVNLRV----LYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 360 VEFNQLA 366
           +  N L 
Sbjct: 147 LAGNPLY 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	568
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.68
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.74

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-67  Score=569.28  Aligned_cols=555  Identities=29%  Similarity=0.455  Sum_probs=409.5

Q ss_pred             CcccCCCCCCCCCCCCCCCCCceeeeceeCCCCCeEEEEeccCCccccc---cC-----------------------Ccc
Q 041497            1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGF---LS-----------------------PFV   54 (568)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~---~~-----------------------~~~   54 (568)
                      ||+++.||. +++.|+.+.+||.|.||.|.  ..+|+.|||+++.+.+.   .+                       ..+
T Consensus        20 ~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~   96 (768)
T 3rgz_A           20 FKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF   96 (768)
T ss_dssp             HHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCC
T ss_pred             HHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhh
Confidence            789999999 99999988899999999997  57999999999887764   22                       467


Q ss_pred             cCCCCCceeeccCCcccccCCc--ccCCCCCCcEEeCCCCcCCCCCCccc-ccCCCCcEEeccCCcccccCchh---hcC
Q 041497           55 GNLSFLRSINLANNSFRAEIPH--EVGNLFRLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLAGESPAE---IGN  128 (568)
Q Consensus        55 ~~~~~L~~L~ls~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~---~~~  128 (568)
                      .++++|++|++++|.+.+.+|.  .++++++|++|++++|.+++..|..+ .++++|++|++++|++++..+..   +.+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            8889999999999999888888  88999999999999998876666655 67788888888888777655544   444


Q ss_pred             ----------------------cCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeec
Q 041497          129 ----------------------LLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG  186 (568)
Q Consensus       129 ----------------------l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  186 (568)
                                            +++|++|++++|.+.+..|. ++++++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence                                  45555555555555544444 6666777777777776666666666777777777777


Q ss_pred             ccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccc
Q 041497          187 LNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKV  266 (568)
Q Consensus       187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~  266 (568)
                      +|.+.+..+.. .+++|+.|++++|.+.+.+|..++..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus       256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            77766555533 66777777777777777777777655588888888888888777888888888888888888887555


Q ss_pred             cCC-ccCCCCCcEEECCCCCCCCcCCCCchh-------------------hhcccC--CCcccEEEeccCcccCcCchhh
Q 041497          267 SIN-FGGLQNLSWLNLGKNNLGTRTANDLDF-------------------ITLLTN--CTKLEVLVLDSNRFGAVLPFSL  324 (568)
Q Consensus       267 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~  324 (568)
                      |.. +..+++|++|++++|.+....+..+.-                   ...+..  +++|+.|++++|.+++..+..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            543 777888888888888776433321110                   001111  4456666666666665555555


Q ss_pred             hcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh------hccCCCeeECccCccccccCccccCccccc
Q 041497          325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNLTMLT  398 (568)
Q Consensus       325 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  398 (568)
                      ..... ++.|++++|.+++..|..+..+++|+.|+++.|.+...      .+++|++|++++|.+++..+..+..+++|+
T Consensus       415 ~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          415 SNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            55543 77777777777766777777777777777777766532      266777777777777777777777777777


Q ss_pred             ccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhh--------------
Q 041497          399 QRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV--------------  464 (568)
Q Consensus       399 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l--------------  464 (568)
                      .|++++|++++..|.++..+++|++|++++|++.+.+|..+..+..+ +.+++++|.+++..|..+              
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            77777777777777777777777777777777777777777777666 777777777766555433              


Q ss_pred             --------------------------------------------------------hcCCCCcEEecCCCcccccCCCcc
Q 041497          465 --------------------------------------------------------GKLKNLVSLDISSNMFSGEIPTTL  488 (568)
Q Consensus       465 --------------------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~  488 (568)
                                                                              ..+++|+.|++++|++++.+|..+
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                    224567788888888888888887


Q ss_pred             c-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccc
Q 041497          489 G-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFV  562 (568)
Q Consensus       489 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~  562 (568)
                      + +++|+.|+|++|++++.+|..++++++|+.||+++|.+++.+|+.+..+++|+.|++++|++++.+|...++.
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  727 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE  727 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence            7 8888888888888888888888888888888888888888888888888888888888888888888775543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-57  Score=494.77  Aligned_cols=513  Identities=30%  Similarity=0.454  Sum_probs=388.6

Q ss_pred             CCCeEEEEeccCCccccccCCcc-cCCCCCceeeccCCcccccCCcc---cC----------------------CCCCCc
Q 041497           32 RHQRVIGLDLRHQSIGGFLSPFV-GNLSFLRSINLANNSFRAEIPHE---VG----------------------NLFRLQ   85 (568)
Q Consensus        32 ~~~~i~~L~l~~~~i~~~~~~~~-~~~~~L~~L~ls~~~~~~~~~~~---~~----------------------~l~~L~   85 (568)
                      ..+++++|++++|.+.+..+..+ .++++|++|++++|.+++..|..   +.                      .+++|+
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~  203 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE  203 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCC
T ss_pred             CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCC
Confidence            34567777777776665555443 56666666666666665444433   34                      455555


Q ss_pred             EEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCC
Q 041497           86 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNR  165 (568)
Q Consensus        86 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  165 (568)
                      +|++++|.+++..|. ++.+++|++|++++|++.+..|..+..+++|++|++++|.+.+..|..  .+++|++|++++|.
T Consensus       204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK  280 (768)
T ss_dssp             EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE
T ss_pred             EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc
Confidence            555555555544443 555556666666666555555555555666666666665555444332  55566666666666


Q ss_pred             CCCCCCcccccc-ccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccC
Q 041497          166 LGGRIPSTRSHV-RNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ  243 (568)
Q Consensus       166 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  243 (568)
                      +.+.+|..+... ++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..|
T Consensus       281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            555566655553 677777777777766555 666777777777777777666666544467777777777777766666


Q ss_pred             ccCCCCC-CCCeEecCCCcccccccCCccC--CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcC
Q 041497          244 DSLSNAT-NLQKLDINRNLFSGKVSINFGG--LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVL  320 (568)
Q Consensus       244 ~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  320 (568)
                      ..+..++ +|+.|++++|.+.+..+..+..  +++|++|++++|.+....+      ..+..+++|+.|++++|++.+..
T Consensus       361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCC
T ss_pred             HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcc
Confidence            6666665 7777777777776665555544  6778888888887765433      24778999999999999999888


Q ss_pred             chhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh------hccCCCeeECccCccccccCccccCc
Q 041497          321 PFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNL  394 (568)
Q Consensus       321 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~  394 (568)
                      +..+...+. ++.|++++|.+.+..|..+..+++|+.|++++|.+...      .+++|++|++++|.+++..+.++..+
T Consensus       435 p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          435 PSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             CGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence            888888765 99999999999999999999999999999999988633      28899999999999999999999999


Q ss_pred             ccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHH--------------------------------
Q 041497          395 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI--------------------------------  442 (568)
Q Consensus       395 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------------------  442 (568)
                      ++|+.|++++|++++..|..+.++++|+.|++++|++.+.+|..+...                                
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999888777654331                                


Q ss_pred             --------------------------------------hhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccC
Q 041497          443 --------------------------------------ITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEI  484 (568)
Q Consensus       443 --------------------------------------~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~  484 (568)
                                                            ..+ +.|++++|.+++.+|..++.+++|+.|++++|++++.+
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence                                                  223 78999999999999999999999999999999999999


Q ss_pred             CCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCC
Q 041497          485 PTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       485 ~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      |..++ +++|+.|+|++|++++.+|..+.+++.|++||+++|++++.+|+. .++.++....+.||+--|-.|
T Consensus       673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred             ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence            99998 999999999999999999999999999999999999999999974 456777778888997555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.5e-56  Score=477.55  Aligned_cols=531  Identities=19%  Similarity=0.207  Sum_probs=417.3

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      .++++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+++++++|++|++++|.++...+..|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            57999999999999988888999999999999999999888999999999999999999999666667999999999999


Q ss_pred             cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccc--ccccCcEEeecccccc
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS--HVRNLISFNVGLNQFS  191 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~  191 (568)
                      ++|++.+..+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+.  .+++|+.|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999877778899999999999999999988888899999999999999998866555554  4588999999999887


Q ss_pred             cCCC-CCCCC---------------------------CCccEEEeecccccccCCCcccCCCC--CcceEeecCCccccc
Q 041497          192 GMFP-PINNI---------------------------SSLEYIFIHRNIYHGSLPLDIGVNLP--NLRFFIISGNNLTGS  241 (568)
Q Consensus       192 ~~~~-~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~  241 (568)
                      +..+ .+..+                           ++|+.|++++|.+.+..+..+. .++  +|++|++++|.+.+.
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence            6555 33333                           4556666666666544443333 443  388888888887777


Q ss_pred             cCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCC-CCch-h-hhcccCCCcccEEEeccCcccC
Q 041497          242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTA-NDLD-F-ITLLTNCTKLEVLVLDSNRFGA  318 (568)
Q Consensus       242 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~-~-~~~l~~~~~L~~L~l~~~~~~~  318 (568)
                      .+.++..+++|++|++++|.+.+..+..+..+++|+.|+++++....... .... + ...+..+++|+.|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            77777778888888888887776666666666666666666543221000 0000 0 0023344555555555555444


Q ss_pred             cCchhhhccc---------------------------ccceEEEcccCcccCCCChhhhhhccccccCccccccch----
Q 041497          319 VLPFSLANLS---------------------------TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV----  367 (568)
Q Consensus       319 ~~~~~~~~~~---------------------------~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~----  367 (568)
                      ..+..+...+                           ..++.|++++|.+.+..+..+..+++|+.|+++.|.+..    
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            4333332221                           247777788888888888889999999999999998753    


Q ss_pred             ---hhccCCCeeECccCccccccCccccCccccccccccccccc--CCCCCCccCCCCceEEEcccCCCCCCCCCchhHH
Q 041497          368 ---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL--GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI  442 (568)
Q Consensus       368 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  442 (568)
                         ..+++|+++++++|.+.+..+..+..+++|+.|++++|.+.  +..|..+.++++|+.|++++|.+.+..+..+..+
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence               23788999999999998888888999999999999999876  4577889999999999999999998777778888


Q ss_pred             hhhceEEEccCCcccccCc--------hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcC
Q 041497          443 ITLSVLLNLSDNLLSGHFP--------AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS  513 (568)
Q Consensus       443 ~~l~~~l~Ls~n~l~~~~~--------~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~  513 (568)
                      ..+ +.|++++|.+++..+        ..+..+++|++|++++|+++...+..+. +++|+.|+|++|+++...+..|..
T Consensus       504 ~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          504 EKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             TTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            887 999999999986432        2378899999999999999844444566 999999999999999877788899


Q ss_pred             CCCCCEEeCCCCccccCcCcccc-ccccCCeeecccCcccccCCCCcccccccc
Q 041497          514 LKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFESKSLFVWPFVDEIK  566 (568)
Q Consensus       514 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~  566 (568)
                      +++|+.|++++|.+++..+..+. .+++|+.+++++|++.|.|+....+..|++
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~  636 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN  636 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred             CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence            99999999999999998888887 899999999999999999997333445543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-54  Score=462.30  Aligned_cols=521  Identities=18%  Similarity=0.146  Sum_probs=417.8

Q ss_pred             eeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 041497           25 TGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS   95 (568)
Q Consensus        25 ~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~   95 (568)
                      ..+.|...         ...+++||+++|.+.+..+..|.++++|++|++++|.+....|.+|+++++|++|++++|.++
T Consensus        15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   94 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI   94 (606)
T ss_dssp             TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred             ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence            45778652         256899999999999988889999999999999999998888999999999999999999998


Q ss_pred             CCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccc
Q 041497           96 GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS  175 (568)
Q Consensus        96 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  175 (568)
                      +..|..|+++++|++|++++|++....+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+.
T Consensus        95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  174 (606)
T 3t6q_A           95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS  174 (606)
T ss_dssp             EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred             ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence            88888999999999999999999876678889999999999999999875545556699999999999999877778888


Q ss_pred             ccccCc--EEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcc--eEeecCC---ccccccCccCCC
Q 041497          176 HVRNLI--SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR--FFIISGN---NLTGSLQDSLSN  248 (568)
Q Consensus       176 ~l~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~---~~~~~~~~~l~~  248 (568)
                      .+++|+  .|++++|.+.+..+.......|+.|+++++.......    ..+..++  .+.+...   ......+..+..
T Consensus       175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF----KGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHH----HHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHh----hhccccchhheechhhccccccccChhHhch
Confidence            999999  8999999998877755566789999988775211111    1222222  2222111   001111122222


Q ss_pred             CC--CCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhc
Q 041497          249 AT--NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLAN  326 (568)
Q Consensus       249 ~~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  326 (568)
                      +.  +|+.+++++|.+.+..+..|+.+++|++|++++|.+...+..       +..+++|++|++++|.+.+..+..+..
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-------l~~l~~L~~L~l~~n~l~~~~~~~~~~  323 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-------LVGLSTLKKLVLSANKFENLCQISASN  323 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-------CCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-------hcccccCCEEECccCCcCcCchhhhhc
Confidence            21  577777777777776666677777777777777777654432       566777777777777777766666666


Q ss_pred             ccccceEEEcccCcccCCCC-hhhhhhccccccCccccccchh--------hccCCCeeECccCccccccCccccCcccc
Q 041497          327 LSTTMTGIAFGNNQISGFIP-DGIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENVLQGTIPSFLGNLTML  397 (568)
Q Consensus       327 ~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  397 (568)
                      .+. ++.|++++|.+.+..+ ..+..+++|+.++++.|.+...        .+++|++|++++|.+.+..+..+..+++|
T Consensus       324 l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  402 (606)
T 3t6q_A          324 FPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL  402 (606)
T ss_dssp             CTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred             cCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence            544 7777777777764443 4477777888888877776432        27889999999999988888899999999


Q ss_pred             cccccccccccCCCCC-CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCccccc---CchhhhcCCCCcEE
Q 041497          398 TQRLLEVNDLLGNIPP-SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH---FPAEVGKLKNLVSL  473 (568)
Q Consensus       398 ~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~---~~~~l~~l~~L~~L  473 (568)
                      +.|++++|++++..+. .+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+++.   .+..+..+++|++|
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L  481 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEIL  481 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEE
Confidence            9999999999876554 48899999999999999998888888888887 9999999999862   33578999999999


Q ss_pred             ecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCccc
Q 041497          474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       474 ~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  552 (568)
                      ++++|++++..|..+. +++|+.|++++|++++..|..+.+++.| .|++++|.+++..|+.+..+++|+.+++++|++.
T Consensus       482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            9999999988888887 9999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             ccCCCCc
Q 041497          553 SKSLFVW  559 (568)
Q Consensus       553 ~~~~~~~  559 (568)
                      |.|+..|
T Consensus       561 c~c~~~~  567 (606)
T 3t6q_A          561 CTCSNIY  567 (606)
T ss_dssp             CSGGGHH
T ss_pred             ccCCcHH
Confidence            9999664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.2e-53  Score=451.78  Aligned_cols=523  Identities=20%  Similarity=0.186  Sum_probs=427.3

Q ss_pred             CCCcee----eeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCc
Q 041497           19 INLCQW----TGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQ   85 (568)
Q Consensus        19 ~~~c~~----~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~   85 (568)
                      .++|.+    ..+.|.++         ..++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus         4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             --CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            445665    35778652         26789999999999998888999999999999999999988888999999999


Q ss_pred             EEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccC
Q 041497           86 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGN  164 (568)
Q Consensus        86 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~  164 (568)
                      +|++++|.+++..|..|+++++|++|++++|++....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            99999999998889999999999999999999987776889999999999999999986 56899999999999999999


Q ss_pred             CCCCCCCccccccccCc----EEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccc
Q 041497          165 RLGGRIPSTRSHVRNLI----SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG  240 (568)
Q Consensus       165 ~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (568)
                      .+.+..+..+..+++|+    .+++++|.+....+......+|+.|++++|.+.+.........++.++.+++..+.+..
T Consensus       164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            99877777787777665    89999999987777444455899999999987644333344477888877775443321


Q ss_pred             c------cCccCCCCC--CCCeEec-CCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEe
Q 041497          241 S------LQDSLSNAT--NLQKLDI-NRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVL  311 (568)
Q Consensus       241 ~------~~~~l~~~~--~L~~L~L-~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  311 (568)
                      .      ....+..+.  .++.+++ ..+.+.+..+. +..+++|+.|+++++.+...+        .+..+++|+.|++
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l  314 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSI  314 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEE
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEc
Confidence            1      111111111  3556666 55666666665 778888888888888876654        2667788888888


Q ss_pred             ccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh--------hccCCCeeECccCcc
Q 041497          312 DSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENVL  383 (568)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--------~~~~L~~L~l~~~~~  383 (568)
                      ++|.+..+ + .+ .. ++++.|++++|...+..  .+..+++|+.+++++|.+...        .+++|++|++++|.+
T Consensus       315 ~~n~l~~l-p-~~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  388 (606)
T 3vq2_A          315 IRCQLKQF-P-TL-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA  388 (606)
T ss_dssp             ESCCCSSC-C-CC-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred             ccccCccc-c-cC-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence            88888443 3 22 33 44888888888544332  566788888888888877543        278999999999998


Q ss_pred             ccccCccccCcccccccccccccccCCCC-CCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccc-cCc
Q 041497          384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSG-HFP  461 (568)
Q Consensus       384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~-~~~  461 (568)
                      ++ .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+++ ..|
T Consensus       389 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~  466 (606)
T 3vq2_A          389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLS  466 (606)
T ss_dssp             EE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEEC
T ss_pred             cc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchH
Confidence            85 55789999999999999999988777 688999999999999999999888888888888 999999999997 468


Q ss_pred             hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccc-
Q 041497          462 AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-  539 (568)
Q Consensus       462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  539 (568)
                      ..+..+++|++|++++|++++..|..+. +++|+.|++++|++++..|..|.++++|++|++++|.++. +|..+..++ 
T Consensus       467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~  545 (606)
T 3vq2_A          467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPK  545 (606)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCT
T ss_pred             HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcc
Confidence            8899999999999999999988888887 9999999999999998889999999999999999999994 666688887 


Q ss_pred             cCCeeecccCcccccCCCCc
Q 041497          540 FLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       540 ~L~~L~l~~n~i~~~~~~~~  559 (568)
                      +|+.|++++|++.|.|+..|
T Consensus       546 ~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          546 SLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             TCCEEECCSCCCCCSSTTHH
T ss_pred             cCcEEEccCCCcccCCccHH
Confidence            69999999999999999764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-51  Score=444.79  Aligned_cols=510  Identities=19%  Similarity=0.185  Sum_probs=386.9

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  117 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  117 (568)
                      .+|.+++.+..++ ..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|+
T Consensus         8 ~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCccccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            4566666666543 2333  789999999999997777789999999999999999998889999999999999999999


Q ss_pred             ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-C
Q 041497          118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-P  196 (568)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~  196 (568)
                      +....+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ .
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            986555679999999999999999997777889999999999999999998888889999999999999999887665 3


Q ss_pred             --CCCCCCccEEEeecccccccCCCcccCCC---------------------------CCcceEeecCCccccccCccCC
Q 041497          197 --INNISSLEYIFIHRNIYHGSLPLDIGVNL---------------------------PNLRFFIISGNNLTGSLQDSLS  247 (568)
Q Consensus       197 --l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~l~  247 (568)
                        ...+++|+.|++++|.+.+..+..+. .+                           ++|+.|++++|.+.+..+.++.
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             hhccccccccEEECCCCcccccChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence              34568999999999988754443322 22                           5678888888988888888887


Q ss_pred             CCC--CCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC-------
Q 041497          248 NAT--NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA-------  318 (568)
Q Consensus       248 ~~~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------  318 (568)
                      .++  +|+.|++++|.+.+..+..++.+++|++|++++|.+....+.      .+..+++|+.++++++...+       
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH------SLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT------TTTTCTTCCEEECTTCBCCC------C
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh------hhcCCCCccEEeccchhhhcccccccc
Confidence            765  499999999999988888899999999999999998876553      47789999999998875442       


Q ss_pred             --cCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh----------ccCCCeeECccCccccc
Q 041497          319 --VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----------LKSLQMLFLHENVLQGT  386 (568)
Q Consensus       319 --~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------~~~L~~L~l~~~~~~~~  386 (568)
                        +....+... .+++.|++++|.+.+..+..+..+++|+.+++++|.+....          .++|+.+++++|.+++.
T Consensus       318 p~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~  396 (680)
T 1ziw_A          318 PKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI  396 (680)
T ss_dssp             CEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred             cccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence              111234444 45999999999999999999999999999999887632111          23566666666666555


Q ss_pred             cCccccCcccccccccccccccC-------------------------CCCCCccCCCCceEEEcccCCCC--CCCCCch
Q 041497          387 IPSFLGNLTMLTQRLLEVNDLLG-------------------------NIPPSIGNCKNLILLTTRKNKPS--GTMPRQL  439 (568)
Q Consensus       387 ~~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~  439 (568)
                      .+..+..+++|+.|++++|.+++                         ..+..+..+++|+.|++++|.+.  +..|..+
T Consensus       397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence            55555555566666665555544                         33334444444455555444443  3445556


Q ss_pred             hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCC--------ccc-ccccceeecccccccccCCcc
Q 041497          440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPT--------TLG-CTSLEYLCMQDNSFTGSIPST  510 (568)
Q Consensus       440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~--------~~~-~~~L~~L~Ls~n~l~~~~~~~  510 (568)
                      ..+..+ +.|++++|.+++..+..+..+++|++|++++|++++..+.        .+. +++|+.|+|++|+++.+.+..
T Consensus       477 ~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~  555 (680)
T 1ziw_A          477 QPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV  555 (680)
T ss_dssp             TTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence            666666 7777777777766666677777777777777777643211        133 777888888888777555556


Q ss_pred             CcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          511 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       511 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      |.++++|+.|++++|.++...+..|..+++|+.|++++|+|++..|..+
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence            7778888888888888877666777778888888888888877766543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-50  Score=430.89  Aligned_cols=512  Identities=17%  Similarity=0.159  Sum_probs=424.8

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  117 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  117 (568)
                      .++.++..+..++ ..+.  +++++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus        16 ~~~c~~~~l~~iP-~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           16 TYNCENLGLNEIP-GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EEECTTSCCSSCC-TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCCcccCc-CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            5777777776543 3333  379999999999998889999999999999999999998889999999999999999999


Q ss_pred             ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-C
Q 041497          118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-P  196 (568)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~  196 (568)
                      +.+..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred             ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence            998889999999999999999999997667889999999999999999986443445559999999999999987766 6


Q ss_pred             CCCCCCcc--EEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCC--eEecCCCc---ccccccCC
Q 041497          197 INNISSLE--YIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ--KLDINRNL---FSGKVSIN  269 (568)
Q Consensus       197 l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~L~~n~---~~~~~~~~  269 (568)
                      +..+++|+  .|++++|.+.+..+.. + ....|+.+++++|...   +..+..+.++.  .+.+....   .....+..
T Consensus       173 ~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          173 MSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             HHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             hhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhH
Confidence            78888888  8899999888544443 3 4568999999988622   22233333333  33322211   11122223


Q ss_pred             ccCCC--CCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCCh
Q 041497          270 FGGLQ--NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD  347 (568)
Q Consensus       270 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~  347 (568)
                      +..+.  +|+.|++++|.+......      .+..+++|+.|++++|.++.+ +..+...+ +++.|++++|.+.+..|.
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~-~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFFNISSN------TFHCFSGLQELDLTATHLSEL-PSGLVGLS-TLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCSSCCTT------TTTTCTTCSEEECTTSCCSCC-CSSCCSCT-TCCEEECTTCCCSBGGGG
T ss_pred             hchhhcCceeEEEeecCccCccCHH------HhccccCCCEEeccCCccCCC-Chhhcccc-cCCEEECccCCcCcCchh
Confidence            33333  799999999999887664      377899999999999999854 44555554 499999999999998899


Q ss_pred             hhhhhccccccCccccccc-------hhhccCCCeeECccCcccccc--CccccCcccccccccccccccCCCCCCccCC
Q 041497          348 GIANLVNLNALGVEFNQLA-------VTILKSLQMLFLHENVLQGTI--PSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC  418 (568)
Q Consensus       348 ~~~~~~~L~~l~l~~~~~~-------~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  418 (568)
                      .+..+++|+.+++++|.+.       ...+++|++|++++|.+++..  +..+..+++|+.|++++|.+++..+..+..+
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  399 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC  399 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence            9999999999999999775       233899999999999998765  6789999999999999999998889999999


Q ss_pred             CCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCccccc---CCCccc-cccc
Q 041497          419 KNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGE---IPTTLG-CTSL  493 (568)
Q Consensus       419 ~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~---~~~~~~-~~~L  493 (568)
                      ++|++|++++|.+.+..+.. +..+..+ +.|++++|.+++..+..+..+++|++|++++|++++.   .+..+. +++|
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            99999999999998776654 6666666 9999999999988888999999999999999999752   224455 9999


Q ss_pred             ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccccC
Q 041497          494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKG  567 (568)
Q Consensus       494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~~  567 (568)
                      +.|++++|.+++..|..|.++++|+.|++++|.+++..|+.+.+++.| .|++++|++++..|..+.....++.
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence            999999999998889999999999999999999999999999999999 9999999999998887766665553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-50  Score=445.65  Aligned_cols=517  Identities=20%  Similarity=0.192  Sum_probs=430.7

Q ss_pred             eeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccC-CcccCCCCCCcEEeCCCCcCCCCCCccc
Q 041497           24 WTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI-PHEVGNLFRLQNLTLTNNYFSGKIPTNL  102 (568)
Q Consensus        24 ~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~  102 (568)
                      |..|.+  ..+++++|||++|.+.+..+..|.++++|++|++++|.....+ |.+|.++++|++|++++|.+++..|+.|
T Consensus        16 L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~   93 (844)
T 3j0a_A           16 LTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF   93 (844)
T ss_dssp             SSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred             CCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence            444444  3478999999999999998999999999999999999655454 8889999999999999999998889999


Q ss_pred             ccCCCCcEEeccCCcccccCchh--hcCcCcCceeecccccCCCCCC-cccCCCCCCCeEEeccCCCCCCCCcccccc--
Q 041497          103 SRCSNLVKFEASNNKLAGESPAE--IGNLLKFQLLNIAENHLRGQLP-ASIGNLSALQEINVNGNRLGGRIPSTRSHV--  177 (568)
Q Consensus       103 ~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--  177 (568)
                      .++++|++|++++|.+.+..+..  +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+  
T Consensus        94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~  173 (844)
T 3j0a_A           94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG  173 (844)
T ss_dssp             CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred             cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence            99999999999999998766655  8899999999999999987654 579999999999999999998888888887  


Q ss_pred             ccCcEEeecccccccCCC-CCCCCCC------ccEEEeecccccccCCCcccCC--CCCcceEeecCC---------ccc
Q 041497          178 RNLISFNVGLNQFSGMFP-PINNISS------LEYIFIHRNIYHGSLPLDIGVN--LPNLRFFIISGN---------NLT  239 (568)
Q Consensus       178 ~~L~~L~l~~~~~~~~~~-~l~~~~~------L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~---------~~~  239 (568)
                      ++|+.|++++|.+.+..+ .+..++.      |+.|++++|.+.+..+..+...  ...++.+.++.+         .+.
T Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            899999999999987665 5555554      9999999998877666655433  245777777633         222


Q ss_pred             cccCccCCCC--CCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCccc
Q 041497          240 GSLQDSLSNA--TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG  317 (568)
Q Consensus       240 ~~~~~~l~~~--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (568)
                      ......+..+  ++|+.|++++|.+.+..+..++.+++|+.|++++|.+....+.      .+..+++|+.|++++|.+.
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~l~  327 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE------AFYGLDNLQVLNLSYNLLG  327 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT------TTTTCSSCCEEEEESCCCS
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH------HhcCCCCCCEEECCCCCCC
Confidence            2333444443  7899999999999988888899999999999999999887654      3678899999999999999


Q ss_pred             CcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-ccCCCeeECccCccccccCccccCccc
Q 041497          318 AVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVLQGTIPSFLGNLTM  396 (568)
Q Consensus       318 ~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~  396 (568)
                      +..+..+..++. ++.|++++|.+.+..+..+..+++|+.|++++|.+.... +++|+.+++++|.++. ++..   ...
T Consensus       328 ~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~-l~~~---~~~  402 (844)
T 3j0a_A          328 ELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT-LPKI---NLT  402 (844)
T ss_dssp             CCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCC-CCCC---CTT
T ss_pred             ccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccc-cccc---ccc
Confidence            888888877765 999999999999888889999999999999999986543 8899999999999883 3332   567


Q ss_pred             ccccccccccccCCCCC-CccCCCCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccc-----cCchhhhcCCC
Q 041497          397 LTQRLLEVNDLLGNIPP-SIGNCKNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSG-----HFPAEVGKLKN  469 (568)
Q Consensus       397 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~-----~~~~~l~~l~~  469 (568)
                      ++.+++++|++++.... .+.++++|+.|++++|++.+..+.. +.....+ +.|++++|.++.     ..+..|..+++
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~  481 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSH  481 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchhhhcCccc
Confidence            89999999999764332 3457999999999999998654432 2233444 899999999873     34456889999


Q ss_pred             CcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeeccc
Q 041497          470 LVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  548 (568)
Q Consensus       470 L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  548 (568)
                      |++|++++|.+++..+..+. +++|+.|+|++|++++..+..+.  ++|+.|++++|.+++..|+.|   .+|+.+++++
T Consensus       482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~  556 (844)
T 3j0a_A          482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH  556 (844)
T ss_dssp             EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred             ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence            99999999999988888777 99999999999999977777665  899999999999999888766   4899999999


Q ss_pred             CcccccCCCCc
Q 041497          549 NHFESKSLFVW  559 (568)
Q Consensus       549 n~i~~~~~~~~  559 (568)
                      |++.|.|+..|
T Consensus       557 Np~~C~c~~~~  567 (844)
T 3j0a_A          557 NKFICECELST  567 (844)
T ss_dssp             ECCCCSSSCCS
T ss_pred             CCcccccccHH
Confidence            99999999764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.4e-49  Score=417.73  Aligned_cols=504  Identities=17%  Similarity=0.162  Sum_probs=420.3

Q ss_pred             EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      ++++.+++.+..++.. +.  +++++|++++|.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCSSCCTT-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcccCCCC-CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            3688888888876543 32  78999999999999888889999999999999999999888889999999999999999


Q ss_pred             cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC
Q 041497          117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP  195 (568)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (568)
                      ++....|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            9998889999999999999999999997777889999999999999999986 569999999999999999999987766


Q ss_pred             -CCCCCCCc----cEEEeecccccccCCCcccCCCCCcceEeecCCccc-cccCccCCCCCCCCeEecCCCccccc----
Q 041497          196 -PINNISSL----EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT-GSLQDSLSNATNLQKLDINRNLFSGK----  265 (568)
Q Consensus       196 -~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~n~~~~~----  265 (568)
                       .+..+++|    +.+++++|.+. .++...+ ...+|+.|++++|.+. +..+..+..++.|+.+++..+.+...    
T Consensus       171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence             56665555    48999999987 4555555 3348999999999876 34566778888899888865544321    


Q ss_pred             --ccCCccCCC--CCcEEEC-CCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCc
Q 041497          266 --VSINFGGLQ--NLSWLNL-GKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ  340 (568)
Q Consensus       266 --~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  340 (568)
                        .+..+..+.  .++.+++ ..+.+....+       .+..+++|+.++++++.+..+.  .+.... +++.|++++|.
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~l~--~l~~~~-~L~~L~l~~n~  318 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKYLE--DVPKHF-KWQSLSIIRCQ  318 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCCCC--CCCTTC-CCSEEEEESCC
T ss_pred             ccChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchhhh--hccccc-cCCEEEccccc
Confidence              111122222  3556666 4444443332       2678899999999999987754  444443 59999999999


Q ss_pred             ccCCCChhhhhhccccccCccccccc----hhhccCCCeeECccCccccc--cCccccCcccccccccccccccCCCCCC
Q 041497          341 ISGFIPDGIANLVNLNALGVEFNQLA----VTILKSLQMLFLHENVLQGT--IPSFLGNLTMLTQRLLEVNDLLGNIPPS  414 (568)
Q Consensus       341 l~~~~~~~~~~~~~L~~l~l~~~~~~----~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~  414 (568)
                      + +.+| .+ .+++|+.++++.|...    ...+++|++|++++|.+++.  .+..+..+++|+.|++++|.+++ .+..
T Consensus       319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~  394 (606)
T 3vq2_A          319 L-KQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN  394 (606)
T ss_dssp             C-SSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred             C-cccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence            9 5566 44 8999999999999543    23489999999999999866  36788999999999999999875 4578


Q ss_pred             ccCCCCceEEEcccCCCCCCCC-CchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccc-cCCCccc-cc
Q 041497          415 IGNCKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSG-EIPTTLG-CT  491 (568)
Q Consensus       415 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~-~~  491 (568)
                      +.++++|+.|++++|.+.+..+ ..+..+..+ +.|++++|.+++..+..+..+++|++|++++|++++ ..|..++ ++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            8999999999999999988877 567777777 999999999998889999999999999999999986 3788777 99


Q ss_pred             ccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccc
Q 041497          492 SLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPF  561 (568)
Q Consensus       492 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  561 (568)
                      +|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|+|+ .+|..+..
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~  542 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH  542 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence            9999999999999888999999999999999999999999999999999999999999999 45554433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.3e-48  Score=406.93  Aligned_cols=499  Identities=18%  Similarity=0.183  Sum_probs=360.9

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      ..++.|++++|.+.+..+..|..+++|++|++++|.+++..+.+|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            56899999999999988889999999999999999998777888999999999999999998777889999999999999


Q ss_pred             cCCcccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccCCCCCCCCccccccccC----cEEeeccc
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL----ISFNVGLN  188 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~  188 (568)
                      ++|++....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+....+..+..+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999986555578999999999999999886 468899999999999999999987777788888888    89999999


Q ss_pred             ccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcc------ccccCccCCCCC--CCCeEecCCC
Q 041497          189 QFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL------TGSLQDSLSNAT--NLQKLDINRN  260 (568)
Q Consensus       189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~--~L~~L~L~~n  260 (568)
                      .+.+..+......+|+.|+++++.............++.++...+....+      .......+..++  .++.++++++
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            99877773333348999999887433211111122444444444332111      111112222222  2455666666


Q ss_pred             -cccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccC
Q 041497          261 -LFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN  339 (568)
Q Consensus       261 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  339 (568)
                       .+.+..+..+..+++|++|++++|.+...+.       .+..+ +|+.|++++|.+..+...    ...+++.|++++|
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~~l~~~----~l~~L~~L~l~~n  335 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFGQFPTL----KLKSLKRLTFTSN  335 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCSSCCBC----BCSSCCEEEEESC
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCcccccCcc----cccccCEEeCcCC
Confidence             4555566667777777777777777665433       24455 777777777777644331    2234777777777


Q ss_pred             cccCCCChhhhhhccccccCccccccchhhccCCCeeECccCcccccc--CccccCcccccccccccccccCCCCCCccC
Q 041497          340 QISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTI--PSFLGNLTMLTQRLLEVNDLLGNIPPSIGN  417 (568)
Q Consensus       340 ~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  417 (568)
                      .+.+..+.  ..+                  ++|++|++++|.+++..  +..+..+++|+.|++++|.+++..+. +..
T Consensus       336 ~~~~~~~~--~~~------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~  394 (570)
T 2z63_A          336 KGGNAFSE--VDL------------------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG  394 (570)
T ss_dssp             BSCCBCCC--CBC------------------TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET
T ss_pred             cccccccc--ccC------------------CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc
Confidence            76554433  333                  34444444444444322  33344455555555555555433322 455


Q ss_pred             CCCceEEEcccCCCCCCCC-CchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCccc-ccCCCccc-ccccc
Q 041497          418 CKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFS-GEIPTTLG-CTSLE  494 (568)
Q Consensus       418 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-~~~~~~~~-~~~L~  494 (568)
                      +++|+.|++++|.+.+..+ ..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+. +++|+
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            5555555555555544433 233334444 66677777777777788899999999999999987 46888777 99999


Q ss_pred             eeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccccc
Q 041497          495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIK  566 (568)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~  566 (568)
                      .|++++|++++..|..|.++++|+.|++++|.+++..++.|.++++|+.|++++|++.|.||..|....|++
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~  545 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  545 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence            999999999988899999999999999999999998888999999999999999999999998764435554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.9e-48  Score=404.97  Aligned_cols=489  Identities=18%  Similarity=0.179  Sum_probs=334.9

Q ss_pred             CceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCc
Q 041497           21 LCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPT  100 (568)
Q Consensus        21 ~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  100 (568)
                      .|.|.++ |          |.+++.+...+. .+  .++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.
T Consensus         3 ~C~~~~~-c----------~~~~~~l~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-C----------DGRSRSFTSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-E----------ECTTSCCSSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-E----------ECCCCccccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4667665 5          444555555433 22  26788888888888877778888888888888888888877777


Q ss_pred             ccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccCCCCCCCC-ccccccc
Q 041497          101 NLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIP-STRSHVR  178 (568)
Q Consensus       101 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~  178 (568)
                      .|.++++|++|++++|++.+..+..+.++++|++|++++|.+.+ ..+..++++++|++|++++|...+.++ ..+..++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            88888888888888888887766778888888888888888875 345678888888888888887444444 5778888


Q ss_pred             cCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccccc---CccCCCCCCCCe
Q 041497          179 NLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSL---QDSLSNATNLQK  254 (568)
Q Consensus       179 ~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~  254 (568)
                      +|++|++++|.+.+..+ .+..+++|+.|+++.+... .++..++..+++|+.|++++|.+.+..   ......+++|+.
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~  227 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK  227 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence            88888888888887666 7888888888888887764 444444446788999999988877642   122345678899


Q ss_pred             EecCCCcccccccC----CccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCc----hhhhc
Q 041497          255 LDINRNLFSGKVSI----NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP----FSLAN  326 (568)
Q Consensus       255 L~L~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~  326 (568)
                      |++++|.+.+..+.    .+..+++|+.+++++|.+.............+..+++++.+++.++.+.....    .....
T Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~  307 (549)
T 2z81_A          228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS  307 (549)
T ss_dssp             EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred             eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence            99998887654332    24567888889888887765432111112235677888999988887654311    01112


Q ss_pred             ccccceEEEcccCcccCCCChhhhhhccccccCccccccchh---------hccCCCeeECccCccccccC--ccccCcc
Q 041497          327 LSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT---------ILKSLQMLFLHENVLQGTIP--SFLGNLT  395 (568)
Q Consensus       327 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~--~~~~~~~  395 (568)
                      ...+++.+++++|.+.......+..+++|+.|++++|.+...         .+++|++|++++|.+++...  ..+..++
T Consensus       308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            234588899998888743333335666666666666655431         14555566666555543321  2345555


Q ss_pred             cccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEec
Q 041497          396 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDI  475 (568)
Q Consensus       396 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~l  475 (568)
                      +|+.|++++|+++ ..|..+..+++|++                         |++++|++++ .+..+  .++|++|++
T Consensus       388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~-------------------------L~Ls~N~l~~-l~~~~--~~~L~~L~L  438 (549)
T 2z81_A          388 NLTSLDISRNTFH-PMPDSCQWPEKMRF-------------------------LNLSSTGIRV-VKTCI--PQTLEVLDV  438 (549)
T ss_dssp             TCCEEECTTCCCC-CCCSCCCCCTTCCE-------------------------EECTTSCCSC-CCTTS--CTTCSEEEC
T ss_pred             CCCEEECCCCCCc-cCChhhcccccccE-------------------------EECCCCCccc-ccchh--cCCceEEEC
Confidence            5555555555554 33444444555544                         4555555442 22222  257888888


Q ss_pred             CCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccC
Q 041497          476 SSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       476 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~  555 (568)
                      ++|++++..   ..+++|++|+|++|+++ .+|. ...+++|+.|++++|.+++..|+.|..+++|+.|++++|++.|.|
T Consensus       439 s~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          439 SNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            888877432   23788888888888887 4554 456788888888888888888888888888888888888888888


Q ss_pred             CCC
Q 041497          556 LFV  558 (568)
Q Consensus       556 ~~~  558 (568)
                      |..
T Consensus       514 ~~~  516 (549)
T 2z81_A          514 PRI  516 (549)
T ss_dssp             HHH
T ss_pred             ccH
Confidence            854

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.1e-48  Score=414.11  Aligned_cols=462  Identities=18%  Similarity=0.256  Sum_probs=242.3

Q ss_pred             CCCCCCCCCCCCcee---eeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCccc------c------cC
Q 041497           10 GVTSSWNNSINLCQW---TGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFR------A------EI   74 (568)
Q Consensus        10 ~~~~~~~~~~~~c~~---~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~------~------~~   74 (568)
                      +..++|+.+.++|.|   .||.|... .+|+.|+|+++.+.|.+++.++++++|++|++++|.+.      +      .+
T Consensus        55 ~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~  133 (636)
T 4eco_A           55 QPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM  133 (636)
T ss_dssp             ---CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTC
T ss_pred             ccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCc
Confidence            455689998999999   99999754 79999999999999999999999999999999999762      1      12


Q ss_pred             CcccCCCCCCcEEeCCCCcCCCCCCccccc-C------------------CCCcEEecc--CCcccccCchhhcCcCcCc
Q 041497           75 PHEVGNLFRLQNLTLTNNYFSGKIPTNLSR-C------------------SNLVKFEAS--NNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        75 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l------------------~~L~~L~l~--~n~~~~~~~~~~~~l~~L~  133 (568)
                      |...  +..|+ ++++++.+.+..|..+.. +                  ..++.+.+.  .|++++ +|..++++++|+
T Consensus       134 ~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~  209 (636)
T 4eco_A          134 SDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR  209 (636)
T ss_dssp             CHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC
T ss_pred             hHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC
Confidence            2222  23444 555555544444433321 1                  111112221  345554 555666666666


Q ss_pred             eeecccccCCCC-----------------CCcccC--CCCCCCeEEeccCCCCCCCCccccccccCcEEeecccc-ccc-
Q 041497          134 LLNIAENHLRGQ-----------------LPASIG--NLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQ-FSG-  192 (568)
Q Consensus       134 ~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-  192 (568)
                      +|++++|.+.+.                 +|..++  ++++|++|++++|.+.+.+|..+..+++|+.|++++|. +.+ 
T Consensus       210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~  289 (636)
T 4eco_A          210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE  289 (636)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred             EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence            666666665543                 555555  66666666666666555556556666666666666555 443 


Q ss_pred             CCC-CCCCC------CCccEEEeecccccccCCC--cccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497          193 MFP-PINNI------SSLEYIFIHRNIYHGSLPL--DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS  263 (568)
Q Consensus       193 ~~~-~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~  263 (568)
                      ..| .+..+      ++|+.|++++|.+. .+|.  .+. .+++|++|++++|.+.+.+| .+..+++|+.|++++|.+.
T Consensus       290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred             cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence            222 22222      44444444444444 3443  222 44445555555554444344 4444444555555555444


Q ss_pred             ccccCCccCCCC-CcEEECCCCCCCCcCCCCchhhhcccC--CCcccEEEeccCcccCcCchhhhcccccceEEEcccCc
Q 041497          264 GKVSINFGGLQN-LSWLNLGKNNLGTRTANDLDFITLLTN--CTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ  340 (568)
Q Consensus       264 ~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  340 (568)
                       ..|..+..+++ |++|++++|.+..++..       +..  +++|+.|++++|.+                        
T Consensus       367 -~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-------~~~~~l~~L~~L~Ls~N~l------------------------  414 (636)
T 4eco_A          367 -EIPANFCGFTEQVENLSFAHNKLKYIPNI-------FDAKSVSVMSAIDFSYNEI------------------------  414 (636)
T ss_dssp             -ECCTTSEEECTTCCEEECCSSCCSSCCSC-------CCTTCSSCEEEEECCSSCT------------------------
T ss_pred             -cccHhhhhhcccCcEEEccCCcCcccchh-------hhhcccCccCEEECcCCcC------------------------
Confidence             33333444444 44444444444422211       111  12444444444444                        


Q ss_pred             ccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccC---
Q 041497          341 ISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN---  417 (568)
Q Consensus       341 l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---  417 (568)
                       .+..|..+..+.           .....+++|++|++++|.++......+..+++|+.|++++|+++......+..   
T Consensus       415 -~~~~p~~l~~~~-----------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          415 -GSVDGKNFDPLD-----------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE  482 (636)
T ss_dssp             -TTTTTCSSCTTC-----------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred             -CCcchhhhcccc-----------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence             443333333100           00000223444444444444222222333455555555555544222222221   


Q ss_pred             ----CCCceEEEcccCCCCCCCCCchh--HHhhhceEEEccCCcccccCchhhhcCCCCcEEec------CCCcccccCC
Q 041497          418 ----CKNLILLTTRKNKPSGTMPRQLP--RIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDI------SSNMFSGEIP  485 (568)
Q Consensus       418 ----~~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~l------s~n~l~~~~~  485 (568)
                          +++|+.|++++|.+. .+|..+.  .+..+ +.|++++|.+++ +|..+..+++|++|++      ++|++.+.+|
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCCc-CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence                225555555555544 3333333  33333 555555555554 5556666677777776      4455556666


Q ss_pred             Cccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          486 TTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       486 ~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      ..+. +++|+.|+|++|+++ .+|..+.  ++|+.|++++|++..
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             HHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence            6665 677777777777774 5555444  567777777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=412.97  Aligned_cols=501  Identities=19%  Similarity=0.198  Sum_probs=410.3

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCC-CCcccccCCCCcEEeccCC
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n  116 (568)
                      ..|.+++.+..++.    -.+++++|++++|.++...+.+|.++++|++|++++|..... .|+.|.++++|++|++++|
T Consensus         8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            34455666666543    457899999999999988899999999999999999955434 4888999999999999999


Q ss_pred             cccccCchhhcCcCcCceeecccccCCCCCCcc--cCCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccccC
Q 041497          117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPAS--IGNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      .+....|..|.++++|++|++++|.+.+..+..  ++++++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            999888999999999999999999998766655  8999999999999999986544 5789999999999999999877


Q ss_pred             CC-CCCCC--CCccEEEeecccccccCCCcccCCCC------CcceEeecCCccccccCccCCC---CCCCCeEecCCC-
Q 041497          194 FP-PINNI--SSLEYIFIHRNIYHGSLPLDIGVNLP------NLRFFIISGNNLTGSLQDSLSN---ATNLQKLDINRN-  260 (568)
Q Consensus       194 ~~-~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~L~~n-  260 (568)
                      .+ .+..+  ++|+.|+++.|.+.+..+..+. .++      .|+.|++++|.+.+..+..+..   ...++.+.+..+ 
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            66 66666  8999999999998876666544 333      3999999999887766655543   356888887743 


Q ss_pred             --------cccccccCCccCC--CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc
Q 041497          261 --------LFSGKVSINFGGL--QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT  330 (568)
Q Consensus       261 --------~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  330 (568)
                              .+.+.....|..+  ++|+.|++++|.+....+.      .+..+++|+.|++++|.+.+..+..+..... 
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-  315 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------VFETLKDLKVLNLAYNKINKIADEAFYGLDN-  315 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------CSSSCCCCCEEEEESCCCCEECTTTTTTCSS-
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCcccccChh------hhhcCCCCCEEECCCCcCCCCChHHhcCCCC-
Confidence                    2333333444443  7899999999999876554      4778999999999999999988888877755 


Q ss_pred             ceEEEcccCcccCCCChhhhhhccccccCccccccchhh------ccCCCeeECccCccccccCccccCccccccccccc
Q 041497          331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV  404 (568)
Q Consensus       331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (568)
                      ++.|++++|.+.+..+..+..+++|+.|+++.|.+....      +++|++|++++|.+++.     ..+++|+.+++++
T Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~  390 (844)
T 3j0a_A          316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSG  390 (844)
T ss_dssp             CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred             CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence            999999999999998999999999999999999885332      88999999999998742     3378999999999


Q ss_pred             ccccCCCCCCccCCCCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccccCch-hhhcCCCCcEEecCCCccc-
Q 041497          405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFS-  481 (568)
Q Consensus       405 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~-  481 (568)
                      |+++.. +..   ...++.+++++|++.+..... +..+..+ +.|++++|.+++..+. .+..+++|+.|++++|.++ 
T Consensus       391 N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~  465 (844)
T 3j0a_A          391 NKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL  465 (844)
T ss_dssp             CCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred             CCcccc-ccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence            999743 322   567999999999988653222 2244555 9999999999865433 4566899999999999986 


Q ss_pred             ----ccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCC
Q 041497          482 ----GEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       482 ----~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                          +..+..+. +++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..+.  ++|+.|++++|++++..|
T Consensus       466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~  543 (844)
T 3j0a_A          466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP  543 (844)
T ss_dssp             SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred             ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence                33345565 89999999999999988899999999999999999999988777776  899999999999999999


Q ss_pred             CCcccc
Q 041497          557 FVWPFV  562 (568)
Q Consensus       557 ~~~~~~  562 (568)
                      ..+..+
T Consensus       544 ~~~~~L  549 (844)
T 3j0a_A          544 DVFVSL  549 (844)
T ss_dssp             CCCSSC
T ss_pred             hHhCCc
Confidence            876543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.7e-47  Score=405.46  Aligned_cols=544  Identities=21%  Similarity=0.210  Sum_probs=404.6

Q ss_pred             CCCCCCCCCCCCC----CCCceee----eceeCCCC---------CeEEEEeccCCccccccCCcccCCCCCceeeccCC
Q 041497            6 QDPLGVTSSWNNS----INLCQWT----GVTCGHRH---------QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANN   68 (568)
Q Consensus         6 ~~~~~~~~~~~~~----~~~c~~~----~~~c~~~~---------~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~   68 (568)
                      .|+..+++.|..+    .+.|.+.    .|.|.++.         ..+++|||++|.|.+..+.+|.++++|++|++++|
T Consensus         7 ~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N   86 (635)
T 4g8a_A            7 KDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC   86 (635)
T ss_dssp             ------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC
Confidence            3667777777554    3456653    47897532         46899999999999988889999999999999999


Q ss_pred             cccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC-CCC
Q 041497           69 SFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLP  147 (568)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~  147 (568)
                      .++...+.+|.++++|++|++++|++++..++.|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|
T Consensus        87 ~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~  166 (635)
T 4g8a_A           87 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  166 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc
Confidence            9987777889999999999999999986666788999999999999999987666778999999999999999875 356


Q ss_pred             cccCCCCCCCeEEeccCCCCCCCCccccccccCc----EEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccC
Q 041497          148 ASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI----SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGV  223 (568)
Q Consensus       148 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  223 (568)
                      ..++.+++|++|++++|.+.+..+..+..+.+++    .++++.+.+....+.......++.+.+..+.....+....+.
T Consensus       167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~  246 (635)
T 4g8a_A          167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ  246 (635)
T ss_dssp             GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred             hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhc
Confidence            7788899999999999999877777776665543    677888877766554455556777777776544333333334


Q ss_pred             CCCCcceEeecCCcc------ccccCccCCCCCCCCeEecCCCccc---ccccCCccCCCCCcEEECCCCCCCCcCCCCc
Q 041497          224 NLPNLRFFIISGNNL------TGSLQDSLSNATNLQKLDINRNLFS---GKVSINFGGLQNLSWLNLGKNNLGTRTANDL  294 (568)
Q Consensus       224 ~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~L~~n~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  294 (568)
                      .+..++...+..+..      .......+.....+....+..+...   ......+....+++.+.+.++.+.....   
T Consensus       247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---  323 (635)
T 4g8a_A          247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---  323 (635)
T ss_dssp             TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---
T ss_pred             CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---
Confidence            556666555433221      1112223333344444444433221   1222335566777888877776654432   


Q ss_pred             hhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-----
Q 041497          295 DFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-----  369 (568)
Q Consensus       295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-----  369 (568)
                           +.....++.+++.+|.+.......+    ..++.+++..+.....  .....+++|+.++++.|.+....     
T Consensus       324 -----~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~  392 (635)
T 4g8a_A          324 -----FSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQS  392 (635)
T ss_dssp             -----GGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred             -----cccchhhhhhhcccccccCcCcccc----hhhhhcccccccCCCC--cccccccccccchhhccccccccccccc
Confidence                 4456778888888887766543322    2377778877766543  23345778888888888764322     


Q ss_pred             ---ccCCCeeECccCccccccCccccCcccccccccccccccCCC-CCCccCCCCceEEEcccCCCCCCCCCchhHHhhh
Q 041497          370 ---LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI-PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITL  445 (568)
Q Consensus       370 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  445 (568)
                         ..+|+.+++..+.... .+..+..++.|+.+++..+...... ...+..+++++.++++.|.+.+..+..+.....+
T Consensus       393 ~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L  471 (635)
T 4g8a_A          393 DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  471 (635)
T ss_dssp             HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence               6789999999988774 4567888999999999988765543 3567889999999999999988888887777777


Q ss_pred             ceEEEccCCcc-cccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCC
Q 041497          446 SVLLNLSDNLL-SGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLS  523 (568)
Q Consensus       446 ~~~l~Ls~n~l-~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  523 (568)
                       +.+++++|.+ .+..|..|..+++|++|++++|++++..|..+. +++|++|+|++|++++..+..|..+++|++||++
T Consensus       472 -~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          472 -EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             -CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             -hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence             9999999974 445678899999999999999999988888887 9999999999999998889999999999999999


Q ss_pred             CCccccCcCcccccc-ccCCeeecccCcccccCCCCcccccccc
Q 041497          524 RNNLSGHIPQYLENL-SFLSFLNLSYNHFESKSLFVWPFVDEIK  566 (568)
Q Consensus       524 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~~  566 (568)
                      +|.+++..|+.|..+ ++|+.|++++||+.|.|...| +..|++
T Consensus       551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~-~~~wl~  593 (635)
T 4g8a_A          551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS-FLQWIK  593 (635)
T ss_dssp             TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH-HHHHHH
T ss_pred             CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH-HHHHHH
Confidence            999999999999988 689999999999999999664 566654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-46  Score=406.92  Aligned_cols=488  Identities=17%  Similarity=0.242  Sum_probs=293.0

Q ss_pred             CcccCCCCCCCCCCCCCCC-----CC--cee------------eeceeCCCCCeEEEEeccCCccccccCCcccCCCCCc
Q 041497            1 MKSQLQDPLGVTSSWNNSI-----NL--CQW------------TGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLR   61 (568)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-----~~--c~~------------~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~   61 (568)
                      ||.++.||     .|+.+.     ++  |.|            .||.|.. ..+|+.|+|+++.+.|.+++.++++++|+
T Consensus       277 ~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~  350 (876)
T 4ecn_A          277 IWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELK  350 (876)
T ss_dssp             HHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCC
T ss_pred             HHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccce
Confidence            46777777     787654     55  999            9999975 57899999999999999999999999999


Q ss_pred             eeec-cCCcccccCCcccCCC----CCC--cEE---------eC-CCCcCCC-----------CCCcccccCCCCcEEec
Q 041497           62 SINL-ANNSFRAEIPHEVGNL----FRL--QNL---------TL-TNNYFSG-----------KIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        62 ~L~l-s~~~~~~~~~~~~~~l----~~L--~~L---------~l-~~n~~~~-----------~~~~~~~~l~~L~~L~l  113 (568)
                      +|++ ++|.+.+..|......    ...  +.+         .. ....+.+           ..+........++.+.+
T Consensus       351 ~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l  430 (876)
T 4ecn_A          351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI  430 (876)
T ss_dssp             EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTT
T ss_pred             EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhcee
Confidence            9999 8888766533221111    000  000         00 0000000           00000011122333333


Q ss_pred             cC--CcccccCchhhcCcCcCceeecccccCCC-----------------CCCcccC--CCCCCCeEEeccCCCCCCCCc
Q 041497          114 SN--NKLAGESPAEIGNLLKFQLLNIAENHLRG-----------------QLPASIG--NLSALQEINVNGNRLGGRIPS  172 (568)
Q Consensus       114 ~~--n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~  172 (568)
                      ..  |.+++ +|..+.++++|++|++++|.+.+                 .+|..++  ++++|++|++++|.+.+.+|.
T Consensus       431 ~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred             ccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH
Confidence            32  45554 55556666666666666666554                 2555555  666666666666666666666


Q ss_pred             cccccccCcEEeecccc-ccc-CCC--------CCCCCCCccEEEeecccccccCCC--cccCCCCCcceEeecCCcccc
Q 041497          173 TRSHVRNLISFNVGLNQ-FSG-MFP--------PINNISSLEYIFIHRNIYHGSLPL--DIGVNLPNLRFFIISGNNLTG  240 (568)
Q Consensus       173 ~l~~l~~L~~L~l~~~~-~~~-~~~--------~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  240 (568)
                      .+..+++|+.|++++|. +.+ ..|        .+..+++|+.|++++|.+. .+|.  .+. .+++|+.|++++|.+. 
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-  586 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-  586 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-
Confidence            66666666666666665 443 222        2233457777777777766 5665  333 6777777777777776 


Q ss_pred             ccCccCCCCCCCCeEecCCCcccccccCCccCCCC-CcEEECCCCCCCCcCCCCchhhhcccCC--CcccEEEeccCccc
Q 041497          241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN-LSWLNLGKNNLGTRTANDLDFITLLTNC--TKLEVLVLDSNRFG  317 (568)
Q Consensus       241 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~  317 (568)
                      .+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+..++.       .+...  ++|+.|++++|++.
T Consensus       587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred             cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhccccCCCCEEECcCCcCC
Confidence            445 6777777777777777776 45555667777 7777777777764432       13333  34788888888776


Q ss_pred             CcCchhh---hcc-cccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCcc-c-
Q 041497          318 AVLPFSL---ANL-STTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSF-L-  391 (568)
Q Consensus       318 ~~~~~~~---~~~-~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~-  391 (568)
                      +..+...   ... ..+++.|++++|.+....+..+..+                  ++|+.|++++|.++ .++.. + 
T Consensus       658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l------------------~~L~~L~Ls~N~L~-~ip~~~~~  718 (876)
T 4ecn_A          658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG------------------SPISTIILSNNLMT-SIPENSLK  718 (876)
T ss_dssp             TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT------------------CCCSEEECCSCCCS-CCCTTSSS
T ss_pred             CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC------------------CCCCEEECCCCcCC-ccChHHhc
Confidence            6433211   110 1236666666666663322223333                  33445555555444 22221 1 


Q ss_pred             ------cCcccccccccccccccCCCCCCcc--CCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchh
Q 041497          392 ------GNLTMLTQRLLEVNDLLGNIPPSIG--NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE  463 (568)
Q Consensus       392 ------~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~  463 (568)
                            .++++|+.|++++|+++ .+|..+.  .+++|                         +.|+|++|.+++ +|..
T Consensus       719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-------------------------~~L~Ls~N~L~~-lp~~  771 (876)
T 4ecn_A          719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-------------------------SNMDVSYNCFSS-FPTQ  771 (876)
T ss_dssp             CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-------------------------CEEECCSSCCSS-CCCG
T ss_pred             cccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-------------------------CEEEeCCCCCCc-cchh
Confidence                  12224444444444444 2333332  34444                         444555555553 4555


Q ss_pred             hhcCCCCcEEecCC------CcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccc
Q 041497          464 VGKLKNLVSLDISS------NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE  536 (568)
Q Consensus       464 l~~l~~L~~L~ls~------n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  536 (568)
                      +..+++|+.|++++      |++.+.+|..+. +++|+.|+|++|++. .+|..+.  ++|+.||+++|++....+..+.
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence            66667777777755      677777787776 888888888888884 6666654  5888999999988877777777


Q ss_pred             ccccCCeeecccCcccc--cCC
Q 041497          537 NLSFLSFLNLSYNHFES--KSL  556 (568)
Q Consensus       537 ~l~~L~~L~l~~n~i~~--~~~  556 (568)
                      ....+..+.+.+|++.+  .||
T Consensus       849 ~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          849 PYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHHHTTCCEEECCTTSEEESCG
T ss_pred             ccccchheeecCCCccccCCCC
Confidence            77777788888887766  555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=385.13  Aligned_cols=469  Identities=16%  Similarity=0.146  Sum_probs=312.8

Q ss_pred             EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      +++|++++.+...+ ..+.  ++|++|++++|.+.+..|.+|.++++|++|++++|.+++..|+.|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            46888888888644 3343  78899999999888767778888899999999999888777888888899999999998


Q ss_pred             cccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccCCCCCCCCccccccccC--cEEeeccccc--c
Q 041497          117 KLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL--ISFNVGLNQF--S  191 (568)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~  191 (568)
                      +++ .+|..  .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            887 45555  78889999999888876 467788888888888888888764   456677777  8888888877  4


Q ss_pred             cCCC-CCCCCC-CccEEEeecccccccCCCcccCCCCCcceEeecCCc-------cccccCccCCCCCCCCeEecCCCcc
Q 041497          192 GMFP-PINNIS-SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN-------LTGSLQDSLSNATNLQKLDINRNLF  262 (568)
Q Consensus       192 ~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~L~~n~~  262 (568)
                      +..+ .+..+. ....++++++.+.+.++...+..+++|+.+++++|.       +.+..+ .+..+++|+.|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            4333 444433 233445556666555555555567777777777765       333333 455666667776666665


Q ss_pred             cccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhh-----hcccccceEEEcc
Q 041497          263 SGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSL-----ANLSTTMTGIAFG  337 (568)
Q Consensus       263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~  337 (568)
                      .+.....+.                          .. ...++|+.|++++|++.+..+..+     ..+ ..++.++++
T Consensus       233 ~~~~~~~~~--------------------------~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~  284 (520)
T 2z7x_B          233 TWNSFIRIL--------------------------QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL-KALSIHQVV  284 (520)
T ss_dssp             EHHHHHHHH--------------------------HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEE
T ss_pred             CHHHHHHHH--------------------------HH-hhhCcccEEEeecccccCccccchhhcccccC-ceeEecccc
Confidence            432211110                          00 012344444444444443333332     222 124445555


Q ss_pred             cCcccCCCC-hhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCcc
Q 041497          338 NNQISGFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG  416 (568)
Q Consensus       338 ~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  416 (568)
                      .|.+  ..| ..+..+-.               ..+|+.|++++|.+....  ....+++|++|++++|.+++..+..+.
T Consensus       285 ~n~~--~~p~~~~~~~~~---------------~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~  345 (520)
T 2z7x_B          285 SDVF--GFPQSYIYEIFS---------------NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG  345 (520)
T ss_dssp             ECCC--CSCTHHHHHHHH---------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             ccce--ecchhhhhcccc---------------cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence            5444  122 23332200               123555555555543221  124556666666666666665566666


Q ss_pred             CCCCceEEEcccCCCCC--CCCCchhHHhhhceEEEccCCcccccCch-hhhcCCCCcEEecCCCcccccCCCccccccc
Q 041497          417 NCKNLILLTTRKNKPSG--TMPRQLPRIITLSVLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFSGEIPTTLGCTSL  493 (568)
Q Consensus       417 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  493 (568)
                      .+++|++|++++|.+.+  .++..+..+..+ +.|++++|.+++..|. .+..+++|++|++++|++++..|..+. ++|
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L  423 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRI  423 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTC
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-ccC
Confidence            66666666666666654  223334444445 7777777777763444 477889999999999999877766554 899


Q ss_pred             ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497          494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI  565 (568)
Q Consensus       494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  565 (568)
                      +.|++++|+++ .+|..+..+++|+.|++++|.++...+..|..+++|+.|++++|++.|.|+..|-...|+
T Consensus       424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~  494 (520)
T 2z7x_B          424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  494 (520)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred             CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence            99999999999 777777799999999999999996555558999999999999999999999765434444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-44  Score=377.68  Aligned_cols=464  Identities=16%  Similarity=0.146  Sum_probs=374.9

Q ss_pred             CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497           33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  112 (568)
Q Consensus        33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  112 (568)
                      .+.+++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            47899999999999998888999999999999999999988889999999999999999999977777799999999999


Q ss_pred             ccCCcccc-cCchhhcCcCcCceeecccccCCCCCC-cccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497          113 ASNNKLAG-ESPAEIGNLLKFQLLNIAENHLRGQLP-ASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF  190 (568)
Q Consensus       113 l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (568)
                      +++|++.. ..|..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+.+..|..+..+++|+.|+++++..
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            99999985 356789999999999999998544444 6799999999999999999988899999999999999999987


Q ss_pred             ccCCC-CCCCCCCccEEEeecccccccC--CCcccCCCCCcceEeecCCcccccc----CccCCCCCCCCeEecCCCccc
Q 041497          191 SGMFP-PINNISSLEYIFIHRNIYHGSL--PLDIGVNLPNLRFFIISGNNLTGSL----QDSLSNATNLQKLDINRNLFS  263 (568)
Q Consensus       191 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~n~~~  263 (568)
                      ..... .+..+++|+.|++++|.+.+..  +..+...+++|+.|++++|.+.+..    +..+..+++|+.+++++|.+.
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence            54433 3456899999999999987532  3334446789999999999887643    234466789999999999887


Q ss_pred             cccc------CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcc
Q 041497          264 GKVS------INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG  337 (568)
Q Consensus       264 ~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~  337 (568)
                      +...      ..+..+++++.+++.++.+...... ..+.......++|+.+++++|.+..+....+... ++++.|+++
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l-~~L~~L~Ls  342 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL-KSLEFLDLS  342 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS-CCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC-TTCCEEECC
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhc-ccchhhhhhcccceEEEeccCccccCCHHHHhcC-ccccEEEcc
Confidence            6432      2346788999999998876553210 0111123345789999999999876544433444 459999999


Q ss_pred             cCcccCCCCh---hhhhhccccccCccccccch--------hhccCCCeeECccCccccccCccccCccccccccccccc
Q 041497          338 NNQISGFIPD---GIANLVNLNALGVEFNQLAV--------TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND  406 (568)
Q Consensus       338 ~~~l~~~~~~---~~~~~~~L~~l~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  406 (568)
                      +|.+.+..|.   .+..+++|+.|++++|.+..        ..+++|++|++++|.++ .++..+..+++|+.|++++|+
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence            9999876643   37788999999999999853        23899999999999998 577788899999999999999


Q ss_pred             ccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCC
Q 041497          407 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPT  486 (568)
Q Consensus       407 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  486 (568)
                      ++.. +..+  .++|                         +.|++++|++++.    ...+++|++|++++|+++ .+|.
T Consensus       422 l~~l-~~~~--~~~L-------------------------~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~  468 (549)
T 2z81_A          422 IRVV-KTCI--PQTL-------------------------EVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD  468 (549)
T ss_dssp             CSCC-CTTS--CTTC-------------------------SEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC
T ss_pred             cccc-cchh--cCCc-------------------------eEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC
Confidence            8642 2221  1344                         5555666666532    246789999999999998 7777


Q ss_pred             cccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcC
Q 041497          487 TLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP  532 (568)
Q Consensus       487 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  532 (568)
                      ...+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            5459999999999999998888889999999999999999987555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-44  Score=379.76  Aligned_cols=473  Identities=20%  Similarity=0.165  Sum_probs=355.8

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      +++++|++++|.++...+.+|.++++|++|++++|.+++..+..|.++++|++|++++|++....+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57999999999999878889999999999999999999777888999999999999999998887889999999999999


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC-CCCCCCCc----cEEEeecc
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSL----EYIFIHRN  211 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L----~~L~l~~~  211 (568)
                      ++|.+.+..+..++++++|++|++++|.+.. .+|..+..+++|++|++++|.+.+..+ .+..+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999986665679999999999999999886 468999999999999999998877655 55566666    67777777


Q ss_pred             cccccCCCcccCCCCCcceEeecCCcccc-ccCccCCCCCCCCeEecCCCccc------ccccCCccCCCCCcEEECCCC
Q 041497          212 IYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLFS------GKVSINFGGLQNLSWLNLGKN  284 (568)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~~~------~~~~~~~~~~~~L~~L~l~~~  284 (568)
                      .+.+..+ ..+ ...+|+.+++++|.... ..+..+..++.++...+....+.      ......+..++++        
T Consensus       188 ~l~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l--------  257 (570)
T 2z63_A          188 PMNFIQP-GAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL--------  257 (570)
T ss_dssp             CCCEECT-TTT-TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS--------
T ss_pred             CceecCH-HHh-ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc--------
Confidence            7664333 333 22367777777663221 12233444555554444322211      1111112211111        


Q ss_pred             CCCCcCCCCchhhhcccCCCcccEEEeccC-cccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcccc
Q 041497          285 NLGTRTANDLDFITLLTNCTKLEVLVLDSN-RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN  363 (568)
Q Consensus       285 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~  363 (568)
                                          .++.+++..+ .+.+..+..+..... ++.+++++|.+.+ +|..+..+ +|+.+++++|
T Consensus       258 --------------------~l~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n  314 (570)
T 2z63_A          258 --------------------TIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIER-VKDFSYNF-GWQHLELVNC  314 (570)
T ss_dssp             --------------------EEEEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEECS-CCBCCSCC-CCSEEEEESC
T ss_pred             --------------------chhhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccchh-hhhhhccC-CccEEeeccC
Confidence                                1334444443 333333333333322 5555555554442 34444444 5555555555


Q ss_pred             ccch---hhccCCCeeECccCccccccCccccCcccccccccccccccCCC--CCCccCCCCceEEEcccCCCCCCCCCc
Q 041497          364 QLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI--PPSIGNCKNLILLTTRKNKPSGTMPRQ  438 (568)
Q Consensus       364 ~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~  438 (568)
                      .+..   ..+++|+.+++++|.+.+..+.  ..+++|+.|++++|.+++..  +..+.++++|++|++++|.+.+..+. 
T Consensus       315 ~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-  391 (570)
T 2z63_A          315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-  391 (570)
T ss_dssp             BCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-
T ss_pred             cccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-
Confidence            4431   1267899999999988765543  77999999999999987654  56788899999999999998765443 


Q ss_pred             hhHHhhhceEEEccCCcccccCc-hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccccc-ccCCccCcCCC
Q 041497          439 LPRIITLSVLLNLSDNLLSGHFP-AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFT-GSIPSTLSSLK  515 (568)
Q Consensus       439 ~~~~~~l~~~l~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~-~~~~~~~~~l~  515 (568)
                      +..+..+ +.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+. +++|+.|++++|.++ +.+|..+..++
T Consensus       392 ~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 FLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EETCTTC-CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccCCC-CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence            6667777 999999999987655 5788999999999999999988888887 999999999999997 46888999999


Q ss_pred             CCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccccC
Q 041497          516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKG  567 (568)
Q Consensus       516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~~  567 (568)
                      +|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+..++.
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999999988999999999999999999999998887777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-42  Score=362.80  Aligned_cols=466  Identities=15%  Similarity=0.156  Sum_probs=299.3

Q ss_pred             EEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC
Q 041497           36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  115 (568)
Q Consensus        36 i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  115 (568)
                      .+++|++++.+..++. .+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+++..|+.|.++++|++|++++
T Consensus        33 ~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            3789999998887543 332  7899999999998877777889999999999999998877788888999999999999


Q ss_pred             CcccccCchhhcCcCcCceeecccccCCCC-CCcccCCCCCCCeEEeccCCCCCCCCccccccccC--cEEeeccccc--
Q 041497          116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQ-LPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL--ISFNVGLNQF--  190 (568)
Q Consensus       116 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--  190 (568)
                      |+++ .+|..  .+++|++|++++|.+.+. .|..++++++|++|++++|.+...   .+..+++|  +.|++++|.+  
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            9887 45544  788999999999888753 357788888899999888887642   34455555  8888888877  


Q ss_pred             ccCCC-CCCCCC-CccEEEeecccccccCCCcccCCCCCcceEeecCCccc----cccCccCCCCCCCCeEecCCCcccc
Q 041497          191 SGMFP-PINNIS-SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT----GSLQDSLSNATNLQKLDINRNLFSG  264 (568)
Q Consensus       191 ~~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~L~~n~~~~  264 (568)
                      .+..+ .+..++ ..-.++++.|.+.+.++...+..+++|+.+++++|...    ......+...++|+.+++.++.+.+
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            44433 333322 11133444444444444444444555555555554210    0011123334444444444443322


Q ss_pred             cccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhh-----hcccccceEEEcccC
Q 041497          265 KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSL-----ANLSTTMTGIAFGNN  339 (568)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~~  339 (568)
                      .....                          +.. ....++|++|++++|.+.+..+..+     ..+ ..+..+++..+
T Consensus       264 ~~~~~--------------------------~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L-~~L~~~~~~~~  315 (562)
T 3a79_B          264 KCSVK--------------------------LFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETAL-KSLMIEHVKNQ  315 (562)
T ss_dssp             HHHHH--------------------------HHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC-CEEEEEEEEEC
T ss_pred             HHHHH--------------------------HHH-hhhcccccEEEEeccEeeccccchhhhcccccc-hheehhhcccc
Confidence            11000                          000 0111244555555544443333222     111 11222222222


Q ss_pred             cccCCCC-hhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCC
Q 041497          340 QISGFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC  418 (568)
Q Consensus       340 ~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  418 (568)
                      .+  ..| ..+..+-               ...+|++|++++|.+....  ....+++|+.|++++|.+++..+..+.++
T Consensus       316 ~~--~~p~~~~~~~~---------------~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  376 (562)
T 3a79_B          316 VF--LFSKEALYSVF---------------AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL  376 (562)
T ss_dssp             CC--SSCHHHHHHHH---------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred             ee--ecChhhhhhhh---------------ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence            22  111 1111110               0134666666666654221  12456677777777777776666677777


Q ss_pred             CCceEEEcccCCCCCCC--CCchhHHhhhceEEEccCCcccccCc-hhhhcCCCCcEEecCCCcccccCCCcccccccce
Q 041497          419 KNLILLTTRKNKPSGTM--PRQLPRIITLSVLLNLSDNLLSGHFP-AEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEY  495 (568)
Q Consensus       419 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~~l~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~  495 (568)
                      ++|++|++++|++.+..  +..+..+..+ +.|++++|.+++..| ..+..+++|++|++++|++++..|..+. ++|+.
T Consensus       377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~  454 (562)
T 3a79_B          377 KRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKV  454 (562)
T ss_dssp             SSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSE
T ss_pred             CCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCE
Confidence            77777777777766422  2334444555 777888888876344 4578889999999999999877666554 79999


Q ss_pred             eecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcc
Q 041497          496 LCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWP  560 (568)
Q Consensus       496 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~  560 (568)
                      |++++|+++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.|.||..|-
T Consensus       455 L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             EECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             EECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            999999999 6666677999999999999999965555589999999999999999999997654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.9e-41  Score=362.23  Aligned_cols=445  Identities=18%  Similarity=0.207  Sum_probs=253.4

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeC-CCCcCCCCCCcccccC-CCCc-----EEec----------cCCcccc
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTL-TNNYFSGKIPTNLSRC-SNLV-----KFEA----------SNNKLAG  120 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-~~n~~~~~~~~~~~~l-~~L~-----~L~l----------~~n~~~~  120 (568)
                      .+++.|+++++.+.+.+|.+++++++|++|++ ++|.+++..|-..... ..+.     .+..          ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46777888888887778888888888888888 6776653322110000 0000     0000          0000000


Q ss_pred             cCchhh-----------cCcCcCceeeccc--ccCCCCCCcccCCCCCCCeEEeccCCCCC-----------------CC
Q 041497          121 ESPAEI-----------GNLLKFQLLNIAE--NHLRGQLPASIGNLSALQEINVNGNRLGG-----------------RI  170 (568)
Q Consensus       121 ~~~~~~-----------~~l~~L~~L~l~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~  170 (568)
                      ..+..+           .....++.+.+..  |.+.+ +|..++++++|++|++++|.+.+                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            000000           1112233333332  45554 66667777777777777777765                 25


Q ss_pred             Ccccc--ccccCcEEeecccccccCCC-CCCCCCCccEEEeeccc-ccc-cCCCccc------CCCCCcceEeecCCccc
Q 041497          171 PSTRS--HVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI-YHG-SLPLDIG------VNLPNLRFFIISGNNLT  239 (568)
Q Consensus       171 ~~~l~--~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~l~~~~~~  239 (568)
                      |..++  .+++|+.|++++|.+.+..| .+.++++|+.|++++|. +.+ .+|..+.      ..+++|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            66655  66666666666666555555 55666666666666665 544 4443222      13345666666666555


Q ss_pred             cccCc--cCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCc-ccEEEeccCcc
Q 041497          240 GSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK-LEVLVLDSNRF  316 (568)
Q Consensus       240 ~~~~~--~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~  316 (568)
                       .+|.  .+..+++|+.|++++|.+. ..| .++.+++|+.|++++|.+..++.       .+..+++ |+.|++++|.+
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~-------~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE-------DFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT-------TSCEECTTCCEEECCSSCC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchH-------HHhhccccCCEEECcCCCC
Confidence             4444  5555556666666666555 333 45555555555555555553222       2444455 55555555555


Q ss_pred             cCcCchhhhccc-ccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcc
Q 041497          317 GAVLPFSLANLS-TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLT  395 (568)
Q Consensus       317 ~~~~~~~~~~~~-~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  395 (568)
                      ..+ +..+.... .+++.|++++|.+.+.+|........                                     ..++
T Consensus       632 ~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~-------------------------------------~~~~  673 (876)
T 4ecn_A          632 KYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD-------------------------------------YKGI  673 (876)
T ss_dssp             CSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT-------------------------------------CCCC
T ss_pred             CcC-chhhhccccCCCCEEECcCCcCCCccccchhhhcc-------------------------------------ccCC
Confidence            422 22222111 12444455544444333211111000                                     0122


Q ss_pred             cccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhH--------HhhhceEEEccCCcccccCchhhh--
Q 041497          396 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR--------IITLSVLLNLSDNLLSGHFPAEVG--  465 (568)
Q Consensus       396 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~l~~~l~Ls~n~l~~~~~~~l~--  465 (568)
                      +|+.|++++|.++......+..+++|+.|++++|.+. .+|..+..        +..+ +.|+|++|.++ .+|..+.  
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~  750 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRAT  750 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhc
Confidence            4444444444444221112234445555555555444 23322221        1234 77888888888 6677776  


Q ss_pred             cCCCCcEEecCCCcccccCCCccc-ccccceeeccc------ccccccCCccCcCCCCCCEEeCCCCccccCcCcccccc
Q 041497          466 KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQD------NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  538 (568)
Q Consensus       466 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  538 (568)
                      .+++|+.|+|++|++++ +|..+. +++|+.|+|++      |.+.+.+|..+.++++|+.|++++|.+ +.+|..+.  
T Consensus       751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--  826 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--  826 (876)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred             cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence            89999999999999996 777776 99999999976      778889999999999999999999999 46777665  


Q ss_pred             ccCCeeecccCcccccCCCC
Q 041497          539 SFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       539 ~~L~~L~l~~n~i~~~~~~~  558 (568)
                      ++|+.|+|++|+|...-+..
T Consensus       827 ~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          827 PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             SSSCEEECCSCTTCEEECGG
T ss_pred             CCCCEEECCCCCCCccChHH
Confidence            69999999999998765544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.2e-42  Score=365.66  Aligned_cols=455  Identities=16%  Similarity=0.228  Sum_probs=304.2

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCC------C------CCCcccccCCCCcEEeccCCcccccCchh
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS------G------KIPTNLSRCSNLVKFEASNNKLAGESPAE  125 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~------~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  125 (568)
                      .+++.|+++++.+.+.+|.+++++++|++|++++|.+.      +      .+|...  +..|+ ++++.+.+.+..+..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            47889999999999999999999999999999999762      1      122222  34455 666666665555544


Q ss_pred             hcC-cCcCceeecccccCCCCCCcccCCCCCCCeEEec--cCCCCCCCCccccccccCcEEeeccccccc----------
Q 041497          126 IGN-LLKFQLLNIAENHLRGQLPASIGNLSALQEINVN--GNRLGGRIPSTRSHVRNLISFNVGLNQFSG----------  192 (568)
Q Consensus       126 ~~~-l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----------  192 (568)
                      +.. +.++..+++....+..      .....++.+.+.  .|.+++ +|..++.+++|+.|++++|.+.+          
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            432 2222222322111110      011122222222  233443 45555555555555555555554          


Q ss_pred             --------CCCCCC--CCCCccEEEeecccccccCCCcccCCCCCcceEeecCCc-ccc-ccCccCCCC------CCCCe
Q 041497          193 --------MFPPIN--NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN-LTG-SLQDSLSNA------TNLQK  254 (568)
Q Consensus       193 --------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~  254 (568)
                              ....+.  ++++|+.|++++|.+.+.+|..+. ++++|++|++++|. +++ ..|..+..+      ++|++
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~  309 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI  309 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence                    222444  555666666666555555554444 56666666666665 554 444444333      56666


Q ss_pred             EecCCCcccccccC--CccCCCCCcEEECCCCCCC-CcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497          255 LDINRNLFSGKVSI--NFGGLQNLSWLNLGKNNLG-TRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM  331 (568)
Q Consensus       255 L~L~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (568)
                      |++++|.++ ..|.  .++.+++|++|++++|.+. .++        .+..+++|+.|++++|++. ..+..+......+
T Consensus       310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L  379 (636)
T 4eco_A          310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV  379 (636)
T ss_dssp             EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC
T ss_pred             EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--------hhCCCCCCCEEECCCCccc-cccHhhhhhcccC
Confidence            666666666 3444  5666666666666666665 222        1445566667777666666 3334444443336


Q ss_pred             eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCcccc-------Cccccccccccc
Q 041497          332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLG-------NLTMLTQRLLEV  404 (568)
Q Consensus       332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~  404 (568)
                      +.|++++|.++ .+|..+..+.                +++|++|++++|.+.+..+..+.       .+++|+.|++++
T Consensus       380 ~~L~Ls~N~l~-~lp~~~~~~~----------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~  442 (636)
T 4eco_A          380 ENLSFAHNKLK-YIPNIFDAKS----------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN  442 (636)
T ss_dssp             CEEECCSSCCS-SCCSCCCTTC----------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred             cEEEccCCcCc-ccchhhhhcc----------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence            77777777666 3454444332                34688999999999888887777       788999999999


Q ss_pred             ccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHh--------hhceEEEccCCcccccCchhhh--cCCCCcEEe
Q 041497          405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRII--------TLSVLLNLSDNLLSGHFPAEVG--KLKNLVSLD  474 (568)
Q Consensus       405 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--------~l~~~l~Ls~n~l~~~~~~~l~--~l~~L~~L~  474 (568)
                      |.++...+..+..+++|++|++++|.+. .+|.......        .+ +.|++++|.++ .+|..+.  .+++|++|+
T Consensus       443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~  519 (636)
T 4eco_A          443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGID  519 (636)
T ss_dssp             SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred             CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence            9998555455677999999999999998 5555443322        55 99999999999 6777776  999999999


Q ss_pred             cCCCcccccCCCccc-ccccceeec------ccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecc
Q 041497          475 ISSNMFSGEIPTTLG-CTSLEYLCM------QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS  547 (568)
Q Consensus       475 ls~n~l~~~~~~~~~-~~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  547 (568)
                      +++|++++ +|..+. +++|+.|+|      ++|.+.+.+|..+.++++|+.|++++|.+. .+|..+.  ++|+.|+++
T Consensus       520 Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls  595 (636)
T 4eco_A          520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIK  595 (636)
T ss_dssp             CCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECC
T ss_pred             CCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECc
Confidence            99999996 787777 999999999      567788899999999999999999999995 5676655  899999999


Q ss_pred             cCcccccCCC
Q 041497          548 YNHFESKSLF  557 (568)
Q Consensus       548 ~n~i~~~~~~  557 (568)
                      +|++.+--+.
T Consensus       596 ~N~l~~~~~~  605 (636)
T 4eco_A          596 DNPNISIDLS  605 (636)
T ss_dssp             SCTTCEEECT
T ss_pred             CCCCccccHH
Confidence            9998875443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-41  Score=350.59  Aligned_cols=436  Identities=17%  Similarity=0.191  Sum_probs=308.4

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      +++++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            78999999999999988888999999999999999999888999999999999999999998 55655  8999999999


Q ss_pred             cCCcccc-cCchhhcCcCcCceeecccccCCCCCCcccCCCCCC--CeEEeccCCC--CCCCCccccccc-cCcEEeecc
Q 041497          114 SNNKLAG-ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL--QEINVNGNRL--GGRIPSTRSHVR-NLISFNVGL  187 (568)
Q Consensus       114 ~~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~  187 (568)
                      ++|++.+ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..+. +...+++++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            9999986 467899999999999999999875   567778888  9999999998  667777777665 344567788


Q ss_pred             cccccCCC--CCCCCCCccEEEeeccc-------ccccCCCcccCCCCCcceEeecCCccccccCccC---CCCCCCCeE
Q 041497          188 NQFSGMFP--PINNISSLEYIFIHRNI-------YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL---SNATNLQKL  255 (568)
Q Consensus       188 ~~~~~~~~--~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L  255 (568)
                      |.+.+..+  .+..+++|+.+++++|.       +.+.++ .+ ..+++|+.|+++++.+.+..+..+   ...++|++|
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hh-ccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence            88776655  67889999999999986       544444 33 378999999999988775322211   124689999


Q ss_pred             ecCCCcccccccCCc-----cCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc
Q 041497          256 DINRNLFSGKVSINF-----GGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT  330 (568)
Q Consensus       256 ~L~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  330 (568)
                      ++++|.+.+..|..+     +.+++|+.+++++|.+ ..+..  .+ ..+...++|+.|++++|.+.....   ....++
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~--~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~  325 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS--YI-YEIFSNMNIKNFTVSGTRMVHMLC---PSKISP  325 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH--HH-HHHHHTCCCSEEEEESSCCCCCCC---CSSCCC
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccce-ecchh--hh-hcccccCceeEEEcCCCccccccc---hhhCCc
Confidence            999999987777766     6677777777777666 22211  00 011112456666666666544321   011123


Q ss_pred             ceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCcccc--ccCccccCccccccccccccccc
Q 041497          331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQG--TIPSFLGNLTMLTQRLLEVNDLL  408 (568)
Q Consensus       331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~  408 (568)
                      ++.|++++|.+++..|..+..+                  ++|++|++++|.+++  ..+..+..+++|+.|++++|.++
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l------------------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHL------------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCC------------------SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             ccEEEeECCccChhhhhhhccC------------------CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence            5555555555554444443332                  234444444444443  22233444555555555555544


Q ss_pred             CCCCC-CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497          409 GNIPP-SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT  487 (568)
Q Consensus       409 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  487 (568)
                      +..+. .+..+++|                         +.|++++|.+++..+..+.  ++|++|++++|+++ .+|..
T Consensus       388 ~~l~~~~~~~l~~L-------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~  439 (520)
T 2z7x_B          388 YDEKKGDCSWTKSL-------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ  439 (520)
T ss_dssp             CCGGGCSCCCCTTC-------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGG
T ss_pred             cccccchhccCccC-------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchh
Confidence            42222 23334444                         5556666666544444433  68999999999998 67765


Q ss_pred             cc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497          488 LG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH  530 (568)
Q Consensus       488 ~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (568)
                      +. +++|+.|++++|+++...+..+..+++|+.|++++|++...
T Consensus       440 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            54 99999999999999854444588999999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5e-40  Score=352.49  Aligned_cols=512  Identities=18%  Similarity=0.138  Sum_probs=388.1

Q ss_pred             EeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcc
Q 041497           39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL  118 (568)
Q Consensus        39 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  118 (568)
                      .+-++..+..++ ..+-  +++++|++++|.++...+.+|.++++|++|++++|.++++.+++|.++++|++|+|++|++
T Consensus        36 ~~c~~~~l~~vP-~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCSSCC-SSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcCccC-CCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            355555555443 2221  3799999999999977778999999999999999999977788899999999999999999


Q ss_pred             cccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC-C
Q 041497          119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP-P  196 (568)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~  196 (568)
                      +...+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.. ..|..+..+++|+.|++++|.+.+..+ .
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            97777889999999999999999997777789999999999999999875 467888999999999999999987655 4


Q ss_pred             CCCCCC----ccEEEeecccccccCCCcccCCCCCcceEeecCCcccc-ccCccCCCCCCCCeEecCCCcc------ccc
Q 041497          197 INNISS----LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLF------SGK  265 (568)
Q Consensus       197 l~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~~------~~~  265 (568)
                      +..++.    ...++++.+.+. .++...+ ....+..+++.++.... ..+..+..++.++...+..+..      ...
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            444433    345677777765 3444444 34456778888775432 2233445566666665543322      222


Q ss_pred             ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCC
Q 041497          266 VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI  345 (568)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~  345 (568)
                      ....+.....+....+..+.......   .....+.....++.+.+.++.+....+...  . ..++.|++.+|.+....
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~-~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDFSY--N-FGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGGGS--C-CCCSEEEEESCEESSCC
T ss_pred             cccccccccchhhhhhhhhhhccccc---chhhhhhhhccccccccccccccccccccc--c-hhhhhhhcccccccCcC
Confidence            22334445555555554433222111   112235566788999998887766543322  2 34899999999887665


Q ss_pred             ChhhhhhccccccCccccccch----hhccCCCeeECccCccccc--cCccccCcccccccccccccccCCCCCCccCCC
Q 041497          346 PDGIANLVNLNALGVEFNQLAV----TILKSLQMLFLHENVLQGT--IPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCK  419 (568)
Q Consensus       346 ~~~~~~~~~L~~l~l~~~~~~~----~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  419 (568)
                      +..   +..|+.+++..+....    ..+++|+.++++.|.+...  .+..+..+.+|+.+++..+.... .+..+..++
T Consensus       345 ~~~---l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~  420 (635)
T 4g8a_A          345 TLK---LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE  420 (635)
T ss_dssp             CCB---CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT
T ss_pred             ccc---chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc
Confidence            544   4456666666665432    2389999999999988643  44556778899999999988764 445678899


Q ss_pred             CceEEEcccCCCCCCCCC-chhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcc-cccCCCccc-cccccee
Q 041497          420 NLILLTTRKNKPSGTMPR-QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMF-SGEIPTTLG-CTSLEYL  496 (568)
Q Consensus       420 ~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l-~~~~~~~~~-~~~L~~L  496 (568)
                      +|+.+++..+......+. .+..+..+ +.+++++|.+.+..+..+..++.|+.|++++|.+ ....|..+. +++|++|
T Consensus       421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L  499 (635)
T 4g8a_A          421 QLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  499 (635)
T ss_dssp             TCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             cccchhhhhcccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence            999999998876655544 44555555 8999999999988888999999999999999975 445777777 9999999


Q ss_pred             ecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccc-cccc
Q 041497          497 CMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFV-DEIK  566 (568)
Q Consensus       497 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~-~~~~  566 (568)
                      +|++|++++..|..|.++++|+.|++++|.+++..+..|..+++|++|++++|+|++..|..++.. +.|+
T Consensus       500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999887544 4554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-38  Score=325.80  Aligned_cols=397  Identities=15%  Similarity=0.154  Sum_probs=217.3

Q ss_pred             eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccc-cCchhhcCcCcCceeecccc
Q 041497           62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG-ESPAEIGNLLKFQLLNIAEN  140 (568)
Q Consensus        62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~  140 (568)
                      .++.+++.++ .+|. +  .++|++|++++|.+++..|..|.++++|++|++++|.+.. ..+..|.++++|++|++++|
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            3444444444 3343 1  1455666666665554445555555555555555555432 22334455555555555555


Q ss_pred             cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCc
Q 041497          141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD  220 (568)
Q Consensus       141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  220 (568)
                      .+.+..|..++++++|++|++++|.+.+..+..                     ..+.                      
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~~----------------------  126 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------------NFFK----------------------  126 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---------------------STTT----------------------
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCc---------------------cccc----------------------
Confidence            554444444444444444444444433211110                     0122                      


Q ss_pred             ccCCCCCcceEeecCCccccccCcc-CCCCCCCCeEecCCCcccccccCCccCC--CCCcEEECCCCCCCCcCCCCch--
Q 041497          221 IGVNLPNLRFFIISGNNLTGSLQDS-LSNATNLQKLDINRNLFSGKVSINFGGL--QNLSWLNLGKNNLGTRTANDLD--  295 (568)
Q Consensus       221 ~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~--  295 (568)
                         .+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+  .+|+.+++++|.+.........  
T Consensus       127 ---~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~  203 (455)
T 3v47_A          127 ---PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE  203 (455)
T ss_dssp             ---TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred             ---CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence               3334444444444444333332 3444455555555555444444433332  3445555555544443322111  


Q ss_pred             hhhcccCCCcccEEEeccCcccCcCchhhhccc--ccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCC
Q 041497          296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLS--TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSL  373 (568)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L  373 (568)
                      ....+..+++|+.|++++|++.+..+..+....  .+++.+++++|...+..                            
T Consensus       204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------------  255 (455)
T 3v47_A          204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS----------------------------  255 (455)
T ss_dssp             HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----------------------------
T ss_pred             ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----------------------------
Confidence            111123445666666666666554443333221  22444444444322110                            


Q ss_pred             CeeECccCccccccCccccC--cccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEc
Q 041497          374 QMLFLHENVLQGTIPSFLGN--LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL  451 (568)
Q Consensus       374 ~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~L  451 (568)
                          +..+.+.+.....+..  .++|+.+++++|.+++..+..+..+++|                         +.|++
T Consensus       256 ----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------~~L~L  306 (455)
T 3v47_A          256 ----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-------------------------EQLTL  306 (455)
T ss_dssp             ----TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC-------------------------CEEEC
T ss_pred             ----cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC-------------------------CEEEC
Confidence                0001111111111111  2345555555555554445555555555                         55566


Q ss_pred             cCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497          452 SDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH  530 (568)
Q Consensus       452 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (568)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|+|++|.+++..|..|..+++|++|++++|.+++.
T Consensus       307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence            66666666677788889999999999998877777777 89999999999999888888899999999999999999987


Q ss_pred             cCccccccccCCeeecccCcccccCCCCccccccc
Q 041497          531 IPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI  565 (568)
Q Consensus       531 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  565 (568)
                      .++.|..+++|+.|++++|++.|.||....+..|+
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  421 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  421 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             CHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence            77788899999999999999999999654444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.7e-37  Score=316.16  Aligned_cols=369  Identities=17%  Similarity=0.172  Sum_probs=246.3

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCC-CCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSG-KIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN  136 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  136 (568)
                      ++|++|++++|.+.+..|..+.++++|++|++++|.+.+ ..+..|.++++|++|++++|++....|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            567777777777776667777777777778777777653 3355677777788888887777766677777777888888


Q ss_pred             cccccCCCCCCcc--cCCCCCCCeEEeccCCCCCCCCcc-ccccccCcEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497          137 IAENHLRGQLPAS--IGNLSALQEINVNGNRLGGRIPST-RSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI  212 (568)
Q Consensus       137 l~~~~l~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  212 (568)
                      +++|.+.+..+..  ++.+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+..+ .+..+            
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------  177 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF------------  177 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc------------
Confidence            8877776533333  777788888888888777655654 6677777777777776665433 22222            


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCcc--------CCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCC
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS--------LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN  284 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~  284 (568)
                                 ..+.++.+++++|.+.+..+..        +..+++|++|++++|.+.+..+..+...           
T Consensus       178 -----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-----------  235 (455)
T 3v47_A          178 -----------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-----------  235 (455)
T ss_dssp             -----------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-----------
T ss_pred             -----------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-----------
Confidence                       1123344444444433322211        2234556666666666554444333211           


Q ss_pred             CCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccc
Q 041497          285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ  364 (568)
Q Consensus       285 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~  364 (568)
                                      ...++|+.+++++|...+..               +..+.+.+..+..+..+.           
T Consensus       236 ----------------~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-----------  273 (455)
T 3v47_A          236 ----------------IAGTKIQSLILSNSYNMGSS---------------FGHTNFKDPDNFTFKGLE-----------  273 (455)
T ss_dssp             ----------------TTTCCEEEEECTTCTTTSCC---------------TTCCSSCCCCTTTTGGGT-----------
T ss_pred             ----------------ccccceeeEeeccccccccc---------------cchhhhccCccccccccc-----------
Confidence                            11234445555444332211               001111111111222211           


Q ss_pred             cchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhh
Q 041497          365 LAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIIT  444 (568)
Q Consensus       365 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  444 (568)
                           .++|+++++++|.+.+..+..+..+++|+.|++++|++++..+..+.++++|++|++++|.              
T Consensus       274 -----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--------------  334 (455)
T 3v47_A          274 -----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF--------------  334 (455)
T ss_dssp             -----TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------
T ss_pred             -----ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc--------------
Confidence                 3578889999998888888889999999999999999988888888888888666555554              


Q ss_pred             hceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCC
Q 041497          445 LSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLS  523 (568)
Q Consensus       445 l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  523 (568)
                                 +++..+..+..+++|++|++++|++++..|..+. +++|++|++++|++++..+..|..+++|+.|+++
T Consensus       335 -----------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          335 -----------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             -----------CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             -----------cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence                       4445567788889999999999999877787777 8999999999999997777778899999999999


Q ss_pred             CCccccCcC
Q 041497          524 RNNLSGHIP  532 (568)
Q Consensus       524 ~n~l~~~~~  532 (568)
                      +|++++..|
T Consensus       404 ~N~l~~~~~  412 (455)
T 3v47_A          404 TNPWDCSCP  412 (455)
T ss_dssp             SSCBCCCTT
T ss_pred             CCCcccCCC
Confidence            999987665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-37  Score=325.34  Aligned_cols=435  Identities=18%  Similarity=0.159  Sum_probs=294.6

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      +.+++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            67999999999999988889999999999999999999888999999999999999999998 56655  8999999999


Q ss_pred             cCCccccc-CchhhcCcCcCceeecccccCCCCCCcccCCCCCC--CeEEeccCCC--CCCCCccccccc-cCcEEeecc
Q 041497          114 SNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL--QEINVNGNRL--GGRIPSTRSHVR-NLISFNVGL  187 (568)
Q Consensus       114 ~~n~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~  187 (568)
                      ++|++... .|..|.++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  .+..|..+..+. ..-.+++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            99999863 468999999999999999999863   45555666  9999999998  777788877754 122567788


Q ss_pred             cccccCCC--CCCCCCCccEEEeeccc-----ccccCCCcccCCCCCcceEeecCCcccccc----CccCCCCCCCCeEe
Q 041497          188 NQFSGMFP--PINNISSLEYIFIHRNI-----YHGSLPLDIGVNLPNLRFFIISGNNLTGSL----QDSLSNATNLQKLD  256 (568)
Q Consensus       188 ~~~~~~~~--~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~  256 (568)
                      |.+.+..+  .+..+++|+.++++.|.     +.+.+ .. +...+.|+.++++++.+.+..    +.. ...++|++|+
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~  282 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE-LTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLN  282 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH-HHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHH-HH-HhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEE
Confidence            88776555  56788999999999874     11111 11 236788888888877655421    111 1235899999


Q ss_pred             cCCCcccccccCCc-----cCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497          257 INRNLFSGKVSINF-----GGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM  331 (568)
Q Consensus       257 L~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (568)
                      +++|.+.+..|..+     ..++.|+.+++..+.+ ..+.   .....+....+|+.|++++|.+.....   ...    
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~---~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~----  351 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSK---EALYSVFAEMNIKMLSISDTPFIHMVC---PPS----  351 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCH---HHHHHHHHTCCCSEEEEESSCCCCCCC---CSS----
T ss_pred             EeccEeeccccchhhhcccccchheehhhccccee-ecCh---hhhhhhhccCcceEEEccCCCcccccC---ccC----
Confidence            99999886666554     3444444444444433 1110   000011112345555555554433210   011    


Q ss_pred             eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCC-
Q 041497          332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN-  410 (568)
Q Consensus       332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-  410 (568)
                                                            +++|++|++++|.+++..+..+..+++|+.|++++|++++. 
T Consensus       352 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  393 (562)
T 3a79_B          352 --------------------------------------PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF  393 (562)
T ss_dssp             --------------------------------------CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred             --------------------------------------CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence                                                  23445555555555544444555555555555555555432 


Q ss_pred             -CCCCccCCCCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcc
Q 041497          411 -IPPSIGNCKNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL  488 (568)
Q Consensus       411 -~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~  488 (568)
                       .+..+.++++|+.|++++|.+.+.++.. +..+..+ +.|++++|.+++..+..+.  ++|++|++++|+++ .+|..+
T Consensus       394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~  469 (562)
T 3a79_B          394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV  469 (562)
T ss_dssp             HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC-CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred             cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC-CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence             1234455555555555555555433332 3333333 6666666666654443332  68999999999988 566554


Q ss_pred             c-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497          489 G-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH  530 (568)
Q Consensus       489 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (568)
                      . +++|+.|++++|+++...+..+..+++|+.|++++|++.+.
T Consensus       470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            4 89999999999999844444488899999999999998764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.8e-37  Score=310.94  Aligned_cols=410  Identities=22%  Similarity=0.227  Sum_probs=194.4

Q ss_pred             CCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497           57 LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN  136 (568)
Q Consensus        57 ~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  136 (568)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+++..|..++.+++|+.+++.+|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            45666666666666 45666666666666666666666555666666555555554443321           3467777


Q ss_pred             cccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccccccc
Q 041497          137 IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS  216 (568)
Q Consensus       137 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  216 (568)
                      +++|.+++ +|.   -.++|++|++++|.+.+ +|..   .++|+.|++++|.+.+....   .++|++|++++|.+.+ 
T Consensus        78 l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-  145 (454)
T 1jl5_A           78 LNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-  145 (454)
T ss_dssp             CTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-
T ss_pred             ecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-
Confidence            77777764 333   13677788888777764 5543   36777777777766643211   1567777777766663 


Q ss_pred             CCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497          217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF  296 (568)
Q Consensus       217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (568)
                      +| . +..+++|++|++++|.+++ .|..   .++|++|++++|.+.+. + .++.+++|++|++++|.+...+.     
T Consensus       146 lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~-----  212 (454)
T 1jl5_A          146 LP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPD-----  212 (454)
T ss_dssp             CC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCC-----
T ss_pred             Cc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCC-----
Confidence            55 2 3366677777777776664 2322   24677777777766653 2 36666677777777666655332     


Q ss_pred             hhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCee
Q 041497          297 ITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQML  376 (568)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L  376 (568)
                           ..++|+.|++++|.+..+.  .+.... +++.|++++|.+++. |..                     +++|++|
T Consensus       213 -----~~~~L~~L~l~~n~l~~lp--~~~~l~-~L~~L~l~~N~l~~l-~~~---------------------~~~L~~L  262 (454)
T 1jl5_A          213 -----LPLSLESIVAGNNILEELP--ELQNLP-FLTTIYADNNLLKTL-PDL---------------------PPSLEAL  262 (454)
T ss_dssp             -----CCTTCCEEECCSSCCSSCC--CCTTCT-TCCEEECCSSCCSSC-CSC---------------------CTTCCEE
T ss_pred             -----CcCcccEEECcCCcCCccc--ccCCCC-CCCEEECCCCcCCcc-ccc---------------------ccccCEE
Confidence                 1245666666666665432  133332 366666666655542 211                     3455666


Q ss_pred             ECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcc
Q 041497          377 FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLL  456 (568)
Q Consensus       377 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l  456 (568)
                      ++++|.+++ ++..   .++|+.|++++|.+++...    ..++|++|++++|.+.+..     .....++.|++++|++
T Consensus       263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKL  329 (454)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCC
T ss_pred             ECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcc
Confidence            666665553 2221   2556666666666554211    0145666666666655311     1111226666666666


Q ss_pred             cccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccc--cCCccCcCC-------------CCCCEEe
Q 041497          457 SGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTG--SIPSTLSSL-------------KSITELD  521 (568)
Q Consensus       457 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l-------------~~L~~L~  521 (568)
                      ++ .|..   +++|++|++++|+++ .+|.  .+++|+.|++++|++++  .+|.++..+             ++|+.|+
T Consensus       330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~  402 (454)
T 1jl5_A          330 IE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH  402 (454)
T ss_dssp             SC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------
T ss_pred             cc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence            64 3322   456666666666666 4444  35666666666666665  455555555             7899999


Q ss_pred             CCCCcccc--CcCccccccccCCeeecccCcccccCCCCc
Q 041497          522 LSRNNLSG--HIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       522 l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      +++|.+++  .+|      ++++.|.+.+|.+.+..|...
T Consensus       403 ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~  436 (454)
T 1jl5_A          403 VETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAH  436 (454)
T ss_dssp             ----------------------------------------
T ss_pred             CCCCcCCccccch------hhHhheeCcCcccCCccccCH
Confidence            99998886  333      356777788888888877553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.6e-37  Score=296.86  Aligned_cols=280  Identities=26%  Similarity=0.422  Sum_probs=247.3

Q ss_pred             CcccCCCCCCCCCCCCCCCCCce--eeeceeCCCC--CeEEEEeccCCcccc--ccCCcccCCCCCceeeccC-Cccccc
Q 041497            1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRH--QRVIGLDLRHQSIGG--FLSPFVGNLSFLRSINLAN-NSFRAE   73 (568)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~c~--~~~~~c~~~~--~~i~~L~l~~~~i~~--~~~~~~~~~~~L~~L~ls~-~~~~~~   73 (568)
                      ||.++.||. +++.|..+.+||.  |.||.|....  .++++|+++++.+.+  ..+..+.++++|++|++++ |.+.+.
T Consensus        14 ~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~   92 (313)
T 1ogq_A           14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             HHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence            577888887 8899988889999  9999997544  789999999999998  7888999999999999995 899888


Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCC
Q 041497           74 IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNL  153 (568)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  153 (568)
                      +|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+
T Consensus        93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A           93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            99999999999999999999988899999999999999999999998899999999999999999999998889999999


Q ss_pred             C-CCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceE
Q 041497          154 S-ALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF  231 (568)
Q Consensus       154 ~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (568)
                      + +|++|++++|.+.+..|..+..++ |+.|++++|.+.+..+ .+..+++|+.|++++|.+.+..+.  +..+++|++|
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L  249 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEE
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEE
Confidence            8 999999999999888899998887 9999999999987766 778888899999988888755554  3367888888


Q ss_pred             eecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCC
Q 041497          232 IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN  285 (568)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~  285 (568)
                      ++++|.+.+..|.++..+++|+.|++++|.+++..|.. ..+++|+.+++.+|+
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            88888888778888888888888888888888766664 677788888887776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-35  Score=301.16  Aligned_cols=411  Identities=21%  Similarity=0.225  Sum_probs=205.1

Q ss_pred             CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCC-------------cEEeCCCCcCCCCCC
Q 041497           33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRL-------------QNLTLTNNYFSGKIP   99 (568)
Q Consensus        33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~~   99 (568)
                      ..++++|++++|.+ +.+|..++++++|++|++++|.+.+.+|.+++++.+|             ++|++++|.++ .+|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            36789999999999 6788889999999999999999999999999998875             88888888887 344


Q ss_pred             cccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccccccc
Q 041497          100 TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN  179 (568)
Q Consensus       100 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  179 (568)
                      ..   .++|++|++++|.+++ +|..   +++|++|++++|.+.+ ++. +  .++|++|++++|.+.+ +| .+..+++
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC-C--CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence            42   3688888888888875 5533   4788888888887764 222 1  1678888888888874 66 5778888


Q ss_pred             CcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCC
Q 041497          180 LISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR  259 (568)
Q Consensus       180 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~  259 (568)
                      |+.|++++|.+.+....   .++|+.|++++|.+.+ ++ . +..+++|+.|++++|.+.+. +..   .++|++|++++
T Consensus       155 L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~  224 (454)
T 1jl5_A          155 LKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGN  224 (454)
T ss_dssp             CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCS
T ss_pred             CCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcC
Confidence            88888888877653222   2467777777776653 44 2 23666777777777766642 221   24677777777


Q ss_pred             CcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccC
Q 041497          260 NLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN  339 (568)
Q Consensus       260 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  339 (568)
                      |.+..+ + .++.+++|++|++++|.+...+.          .+++|+.|++++|++.++..     ...+++.|++++|
T Consensus       225 n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N  287 (454)
T 1jl5_A          225 NILEEL-P-ELQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSEN  287 (454)
T ss_dssp             SCCSSC-C-CCTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred             CcCCcc-c-ccCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCcccccCc-----ccCcCCEEECcCC
Confidence            766633 3 25666667777777666655332          12556666666666655321     1133555666555


Q ss_pred             cccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCc-ccccccccccccccCCCCCCccCC
Q 041497          340 QISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNL-TMLTQRLLEVNDLLGNIPPSIGNC  418 (568)
Q Consensus       340 ~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~  418 (568)
                      .+++..                      ...++|++|++++|.+++. +    .+ ++|+.|++++|++++ .|..   +
T Consensus       288 ~l~~l~----------------------~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~  336 (454)
T 1jl5_A          288 IFSGLS----------------------ELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---P  336 (454)
T ss_dssp             CCSEES----------------------CCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             ccCccc----------------------CcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---C
Confidence            554311                      1124566666666665531 1    12 356666666666654 2222   3


Q ss_pred             CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccc--cCchhhhcCCCCcEEecCCCcccccCCCccccccccee
Q 041497          419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSG--HFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYL  496 (568)
Q Consensus       419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  496 (568)
                      ++|++|++++|.+.+ +|.   .+..+ +.|++++|.+++  ..|..+.      .|  +.|.+.+.+|..  +++|+.|
T Consensus       337 ~~L~~L~L~~N~l~~-lp~---~l~~L-~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~--~~~L~~L  401 (454)
T 1jl5_A          337 PRLERLIASFNHLAE-VPE---LPQNL-KQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL--PQNLKQL  401 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSSCCCCCTTCC------EE--ECCC-----------------
T ss_pred             CcCCEEECCCCcccc-ccc---hhhhc-cEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc--cCcCCEE
Confidence            556666666665552 333   11222 555666666554  3333322      12  223333344432  4788888


Q ss_pred             ecccccccc--cCCccCcCCCCCCEEeCCCCccccCcCccccc
Q 041497          497 CMQDNSFTG--SIPSTLSSLKSITELDLSRNNLSGHIPQYLEN  537 (568)
Q Consensus       497 ~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  537 (568)
                      ++++|.+++  .+|      +.++.|++.+|.+.+..+.....
T Consensus       402 ~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          402 HVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             -------------------------------------------
T ss_pred             ECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence            888888875  333      35677778888877665544433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=297.34  Aligned_cols=308  Identities=20%  Similarity=0.206  Sum_probs=226.3

Q ss_pred             CCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCc
Q 041497          226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK  305 (568)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (568)
                      +.++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+...+..      .+..+++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG------VFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT------SSTTCTT
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc------cccCCCC
Confidence            4566677777766666666666677777777777776666666666677777777777766655443      2456667


Q ss_pred             ccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCcccc
Q 041497          306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQG  385 (568)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~  385 (568)
                      |+.|++++|++.+..+..+..+.. |+.|++++|.+.+..+..|..+                  ++|++|++++|.+++
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l------------------~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGL------------------NSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTC------------------TTCCEEEEESCCCSS
T ss_pred             CCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCC------------------CCCCEEECCCCcCcc
Confidence            777777777666665555555543 6667777666666555555554                  345666666666665


Q ss_pred             ccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497          386 TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG  465 (568)
Q Consensus       386 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~  465 (568)
                      ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++........+ +.|++++|.+++..+..+.
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~  245 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVR  245 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCCSCCHHHHT
T ss_pred             cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCcccccCHHHhc
Confidence            444556677777777777777776666677777777777777777666665555544455 8888888888866556788


Q ss_pred             cCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCee
Q 041497          466 KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL  544 (568)
Q Consensus       466 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  544 (568)
                      .+++|++|++++|.+++..+..+. +++|+.|+|++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+.|
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence            999999999999999877777776 8999999999999998888899999999999999999998888888999999999


Q ss_pred             ecccCcccccCCCCc
Q 041497          545 NLSYNHFESKSLFVW  559 (568)
Q Consensus       545 ~l~~n~i~~~~~~~~  559 (568)
                      ++++|++.|.|+..|
T Consensus       326 ~l~~N~l~c~c~~~~  340 (477)
T 2id5_A          326 ILDSNPLACDCRLLW  340 (477)
T ss_dssp             ECCSSCEECSGGGHH
T ss_pred             EccCCCccCccchHh
Confidence            999999999988765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.4e-34  Score=288.48  Aligned_cols=357  Identities=19%  Similarity=0.169  Sum_probs=210.9

Q ss_pred             cccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497           53 FVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF  132 (568)
Q Consensus        53 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  132 (568)
                      .+.++++|++|++++|.+++ +| ++..+++|++|++++|.+++. |  ++.+++|++|++++|++++. +  +.++++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            45666677777777766664 34 466667777777777766643 2  66667777777777766642 2  5666777


Q ss_pred             ceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccc
Q 041497          133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNI  212 (568)
Q Consensus       133 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  212 (568)
                      ++|++++|.+.+. +  ++.+++|++|++++|.+.+ +  .++.+++|+.|++++|...+.. .+..+++|+.|++++|.
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc
Confidence            7777777766642 2  6666777777777776654 2  2566666777777766443333 45566677777777776


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCC
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN  292 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  292 (568)
                      +.+ ++   ...+++|+.|++++|.+++.   .+..+++|+.|++++|.++++ |  ++.+++|+.|++++|.+...+  
T Consensus       182 l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--  249 (457)
T 3bz5_A          182 ITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--  249 (457)
T ss_dssp             CCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred             cce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC--
Confidence            653 33   23667777777777777754   366777788888888877763 3  667777888888887777654  


Q ss_pred             CchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccC
Q 041497          293 DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKS  372 (568)
Q Consensus       293 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  372 (568)
                             ...+++|+.++++.+.               ++.+++++|.+.+..|  +..+++|+.|++++|.....    
T Consensus       250 -------~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~----  301 (457)
T 3bz5_A          250 -------VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL----  301 (457)
T ss_dssp             -------CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE----
T ss_pred             -------HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccce----
Confidence                   2356777777776653               5556667776555444  34455666666665543221    


Q ss_pred             CCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEcc
Q 041497          373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS  452 (568)
Q Consensus       373 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls  452 (568)
                         +....+.++..   .+..+++|+.|++++|++++.   .+.++++|+.|++++|++.+.        ..+ ..++++
T Consensus       302 ---l~~~~~~L~~L---~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L-~~L~l~  363 (457)
T 3bz5_A          302 ---LDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSV-GKIPAL  363 (457)
T ss_dssp             ---EECTTCCCSCC---CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTG-GGSSGG
T ss_pred             ---eccCCCcceEe---chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------ccc-cccccc
Confidence               11111121110   133345666666666666653   255666666666666665531        111 333445


Q ss_pred             CCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497          453 DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT  487 (568)
Q Consensus       453 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  487 (568)
                      +|.+.|.     ..+..|..+++++|++++.+|..
T Consensus       364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            5544432     23334444555555555554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-33  Score=285.77  Aligned_cols=363  Identities=18%  Similarity=0.176  Sum_probs=242.8

Q ss_pred             ccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcc
Q 041497           70 FRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPAS  149 (568)
Q Consensus        70 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  149 (568)
                      .....+..++++++|++|++++|.+++ .| .+..+++|++|++++|++++. +  +..+++|++|++++|.+.+.   .
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---D  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---C
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---e
Confidence            334455577889999999999999985 45 689999999999999998853 3  78899999999999998864   2


Q ss_pred             cCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcc
Q 041497          150 IGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR  229 (568)
Q Consensus       150 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  229 (568)
                      ++.+++|++|++++|.+.+ ++  +..+++|+.|++++|.+.+.  .+..+++|+.|+++.|...+.++   +..+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD---VTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccc---cccCCcCC
Confidence            8889999999999998875 33  78888899999988888764  46677777777777775444442   22566777


Q ss_pred             eEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497          230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL  309 (568)
Q Consensus       230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  309 (568)
                      .|++++|.+++. +  +..+++|+.|++++|.+++.   .++.+++|++|++++|.+..++         +..+++|+.|
T Consensus       174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L~~L  238 (457)
T 3bz5_A          174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQLTYF  238 (457)
T ss_dssp             EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTCSEE
T ss_pred             EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCCCEE
Confidence            777777776653 2  55666777777777776644   2556666666666666665532         3355666666


Q ss_pred             EeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCc
Q 041497          310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPS  389 (568)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  389 (568)
                      ++++|++++...                            ..+++|+.++++.+        +|+.+++++|.+.+.++ 
T Consensus       239 ~l~~N~l~~~~~----------------------------~~l~~L~~L~l~~n--------~L~~L~l~~n~~~~~~~-  281 (457)
T 3bz5_A          239 DCSVNPLTELDV----------------------------STLSKLTTLHCIQT--------DLLEIDLTHNTQLIYFQ-  281 (457)
T ss_dssp             ECCSSCCSCCCC----------------------------TTCTTCCEEECTTC--------CCSCCCCTTCTTCCEEE-
T ss_pred             EeeCCcCCCcCH----------------------------HHCCCCCEEeccCC--------CCCEEECCCCccCCccc-
Confidence            666666555321                            22333444444332        45667777777655544 


Q ss_pred             cccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCC
Q 041497          390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN  469 (568)
Q Consensus       390 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~  469 (568)
                       +..+++|+.|++++|...+..+.   ..+.|+.+++++|.             .+ +.|++++|++++.   .++.+++
T Consensus       282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~-------------~L-~~L~L~~N~l~~l---~l~~l~~  340 (457)
T 3bz5_A          282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNP-------------KL-VYLYLNNTELTEL---DVSHNTK  340 (457)
T ss_dssp             -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT-------------TC-CEEECTTCCCSCC---CCTTCTT
T ss_pred             -ccccccCCEEECCCCcccceecc---CCCcceEechhhcc-------------cC-CEEECCCCccccc---ccccCCc
Confidence             45677888888888876655543   23455555665552             22 6677777777753   2667777


Q ss_pred             CcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCc
Q 041497          470 LVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ  533 (568)
Q Consensus       470 L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  533 (568)
                      |+.|++++|++++       ++.|+.|++++|.+.+.     .++..|+.+++++|.+++.+|.
T Consensus       341 L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          341 LKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             CcEEECCCCCCCC-------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            7777777777764       24455556666655543     2334455556666666655554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-32  Score=283.16  Aligned_cols=345  Identities=29%  Similarity=0.389  Sum_probs=182.8

Q ss_pred             CCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497           56 NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL  135 (568)
Q Consensus        56 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  135 (568)
                      .++++++|+++++.+. .+| .+..+++|++|++++|.+++. +. +..+++|++|++++|++....+  +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            4566677777766665 233 356666777777777766633 32 6666677777776666653322  6666666666


Q ss_pred             ecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccc
Q 041497          136 NIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG  215 (568)
Q Consensus       136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (568)
                      ++++|.+.+. + .+..+++|++|++++|.+.. . ..+..+++|+.|++. +.+.+. +.+.                 
T Consensus       118 ~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~-~~~~~~-~~~~-----------------  174 (466)
T 1o6v_A          118 TLFNNQITDI-D-PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFG-NQVTDL-KPLA-----------------  174 (466)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEE-ESCCCC-GGGT-----------------
T ss_pred             ECCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecC-CcccCc-hhhc-----------------
Confidence            6666666543 2 25666666666666665542 2 234555555555553 211111 1122                 


Q ss_pred             cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCch
Q 041497          216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD  295 (568)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (568)
                              .+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  ++.+++|++|++++|.+....     
T Consensus       175 --------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----  237 (466)
T 1o6v_A          175 --------NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-----  237 (466)
T ss_dssp             --------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----
T ss_pred             --------cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-----
Confidence                    555666666666655533  235556666666666666655444  455666666666666655432     


Q ss_pred             hhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCe
Q 041497          296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQM  375 (568)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~  375 (568)
                         .+..+++|+.|++++|.+.+..+  +... ++++.|++++|.+.+..+  +..                  +++|+.
T Consensus       238 ---~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~--~~~------------------l~~L~~  291 (466)
T 1o6v_A          238 ---TLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISP--LAG------------------LTALTN  291 (466)
T ss_dssp             ---GGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGG--GTT------------------CTTCSE
T ss_pred             ---hhhcCCCCCEEECCCCccccchh--hhcC-CCCCEEECCCCccCcccc--ccC------------------CCccCe
Confidence               24456666666666666655432  2222 225555555555443222  222                  234555


Q ss_pred             eECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCc
Q 041497          376 LFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL  455 (568)
Q Consensus       376 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~  455 (568)
                      |++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++.+                      
T Consensus       292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------------  345 (466)
T 1o6v_A          292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD----------------------  345 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC----------------------
T ss_pred             EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC----------------------
Confidence            5555555543222  4455555555555555554333  4445555555555444432                      


Q ss_pred             ccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeeccccccc
Q 041497          456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFT  504 (568)
Q Consensus       456 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~  504 (568)
                         .  ..+..+++|+.|++++|++++..| ...+++|+.|++++|.++
T Consensus       346 ---~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          346 ---V--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ---C--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred             ---c--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence               2  234455555555555555554333 222555555555555555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.7e-33  Score=286.02  Aligned_cols=312  Identities=19%  Similarity=0.189  Sum_probs=260.8

Q ss_pred             eeeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 041497           24 WTGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYF   94 (568)
Q Consensus        24 ~~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~   94 (568)
                      |..+.|..+         ...++.|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            356777642         25688999999999988888899999999999999999887888999999999999999999


Q ss_pred             CCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccc
Q 041497           95 SGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR  174 (568)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  174 (568)
                      +...+..|.++++|++|++++|++....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL  172 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence            86666678899999999999999988888889999999999999999887777889999999999999999886555678


Q ss_pred             cccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCC
Q 041497          175 SHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ  253 (568)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  253 (568)
                      ..+++|+.|++++|.+....+ .+..+++|+.|++++|...+.++...+ ...+|+.|++++|.++...+..+..+++|+
T Consensus       173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred             cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccC
Confidence            889999999999998887766 788889999999998887777777666 455899999999988866556778888999


Q ss_pred             eEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceE
Q 041497          254 KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTG  333 (568)
Q Consensus       254 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  333 (568)
                      .|++++|.+.+..+..+..+++|++|++++|.+....+.      .+..+++|+.|++++|+++++.+..+..... ++.
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~  324 (477)
T 2id5_A          252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGN-LET  324 (477)
T ss_dssp             EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGG-CCE
T ss_pred             eeECCCCcCCccChhhccccccCCEEECCCCccceECHH------HhcCcccCCEEECCCCcCceeCHhHcCCCcc-cCE
Confidence            999999998888777888888999999999888876554      3667888889999888888876666665544 888


Q ss_pred             EEcccCcccC
Q 041497          334 IAFGNNQISG  343 (568)
Q Consensus       334 L~l~~~~l~~  343 (568)
                      |++++|.+..
T Consensus       325 L~l~~N~l~c  334 (477)
T 2id5_A          325 LILDSNPLAC  334 (477)
T ss_dssp             EECCSSCEEC
T ss_pred             EEccCCCccC
Confidence            8888887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-32  Score=281.43  Aligned_cols=345  Identities=25%  Similarity=0.351  Sum_probs=269.2

Q ss_pred             CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497           33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  112 (568)
Q Consensus        33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  112 (568)
                      ..+++.|+++++.+....  .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+++..+  +..+++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            367999999999888643  4889999999999999998544 3 8999999999999999985444  99999999999


Q ss_pred             ccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497          113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG  192 (568)
Q Consensus       113 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (568)
                      +++|++... + .+..+++|++|++++|.+.+ . ..++.+++|++|++++ .+..  ...+..+++|+.|++++|.+.+
T Consensus       119 L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQITDI-D-PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCcCCC
Confidence            999999854 3 38899999999999999985 3 4589999999999974 4432  2348899999999999999875


Q ss_pred             CCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccC
Q 041497          193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG  272 (568)
Q Consensus       193 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~  272 (568)
                      . +.+..+++|+.|++++|.+.+..+   ...+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..
T Consensus       192 ~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          192 I-SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             C-GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             C-hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            4 457888999999999998875444   33688999999999988754  457788999999999999886655  788


Q ss_pred             CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhh
Q 041497          273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL  352 (568)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~  352 (568)
                      +++|++|++++|.+....+        +..+++|+.|++++|++.+..+  +... ++++.|++++|.+.+..+  +..+
T Consensus       264 l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l  330 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNISDISP--VSSL  330 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCCSCCGG--GGGC
T ss_pred             CCCCCEEECCCCccCcccc--------ccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcCCCchh--hccC
Confidence            8999999999998876542        5678899999999998887654  3444 348889999888877654  4444


Q ss_pred             ccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCC
Q 041497          353 VNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS  432 (568)
Q Consensus       353 ~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  432 (568)
                                        ++|++|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++.
T Consensus       331 ------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          331 ------------------TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ------------------TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             ------------------ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence                              4556666666665543  345666666666666666665544  566666777776666655


Q ss_pred             C
Q 041497          433 G  433 (568)
Q Consensus       433 ~  433 (568)
                      +
T Consensus       389 ~  389 (466)
T 1o6v_A          389 N  389 (466)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.1e-32  Score=273.31  Aligned_cols=310  Identities=18%  Similarity=0.162  Sum_probs=167.0

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      .+++.++++++.+...+...+..+++|++|++++|.+.+..+.++..+++|++|++++|.+++..|..|.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            44555666666655555444556666666666666665545555666666666666666666555555566666666666


Q ss_pred             cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      ++|++....+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+...   .+..+++|+.+++++|.+...
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence            66666533333345566666666666666555555566666666666666655422   244555666666665554422


Q ss_pred             CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497          194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL  273 (568)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~  273 (568)
                          ...+.|+.|++++|.+.. ++..   ..++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+
T Consensus       202 ----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          202 ----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             ----ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----CCCCcceEEECCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence                222355555555555542 2221   234555566655555532  344555556666666665555555555555


Q ss_pred             CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhc
Q 041497          274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLV  353 (568)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~  353 (568)
                      ++|++|++++|.+...+..       +..+++|+.|++++|++..+ +..+...+ +++.|++++|.+++..   +.   
T Consensus       272 ~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~n~l~~~-~~~~~~l~-~L~~L~L~~N~i~~~~---~~---  336 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNLY-------GQPIPTLKVLDLSHNHLLHV-ERNQPQFD-RLENLYLDHNSIVTLK---LS---  336 (390)
T ss_dssp             SSCCEEECCSSCCCEEECS-------SSCCTTCCEEECCSSCCCCC-GGGHHHHT-TCSEEECCSSCCCCCC---CC---
T ss_pred             ccCCEEECCCCcCcccCcc-------cCCCCCCCEEECCCCcceec-CccccccC-cCCEEECCCCccceeC---ch---
Confidence            5555555555555543321       23445555555555555432 22222222 2555555555444321   11   


Q ss_pred             cccccCccccccchhhccCCCeeECccCccccc
Q 041497          354 NLNALGVEFNQLAVTILKSLQMLFLHENVLQGT  386 (568)
Q Consensus       354 ~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~  386 (568)
                                     .+++|++|++++|.+.+.
T Consensus       337 ---------------~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          337 ---------------THHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             ---------------TTCCCSEEECCSSCEEHH
T ss_pred             ---------------hhccCCEEEcCCCCccch
Confidence                           256777888888877654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=9.2e-32  Score=269.91  Aligned_cols=310  Identities=18%  Similarity=0.191  Sum_probs=156.6

Q ss_pred             CCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEE
Q 041497          201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN  280 (568)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~  280 (568)
                      ++++.++++++.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            44444555444443 34444444555566666665555555455555556666666666665555555555556666666


Q ss_pred             CCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCc
Q 041497          281 LGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV  360 (568)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l  360 (568)
                      +++|.+...+..      .+..+++|++|++++|.+.+..+..+..... ++.|++++|.+++..   +..+++|+.+++
T Consensus       124 L~~n~l~~l~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~---~~~l~~L~~L~l  193 (390)
T 3o6n_A          124 LERNDLSSLPRG------IFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLFHANV  193 (390)
T ss_dssp             CCSSCCCCCCTT------TTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBCC---GGGCTTCSEEEC
T ss_pred             CCCCccCcCCHH------HhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCccc---cccccccceeec
Confidence            666655544432      2345555666666666555554444444433 555666555555431   233344444444


Q ss_pred             cccccchh-hccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCch
Q 041497          361 EFNQLAVT-ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL  439 (568)
Q Consensus       361 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  439 (568)
                      +.|.+... ..++|++|++++|.+.....   ...++|+.|++++|.+++.  ..+..+++|++|++++|.         
T Consensus       194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~---------  259 (390)
T 3o6n_A          194 SYNLLSTLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE---------  259 (390)
T ss_dssp             CSSCCSEEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC---------
T ss_pred             ccccccccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc---------
Confidence            44444321 24456666666666553321   1134555555555555432  344455555555544444         


Q ss_pred             hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCC
Q 041497          440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSIT  518 (568)
Q Consensus       440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  518 (568)
                                      +++..+..+..+++|++|++++|++++ ++..+. +++|+.|++++|+++ .+|..+..+++|+
T Consensus       260 ----------------l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~  321 (390)
T 3o6n_A          260 ----------------LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  321 (390)
T ss_dssp             ----------------CCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             ----------------CCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence                            444444455555555555555555542 222222 555555555555555 3334444555555


Q ss_pred             EEeCCCCccccCcCccccccccCCeeecccCcccccCC
Q 041497          519 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      .|++++|.++...   +..+++|+.|++++|++.|.+.
T Consensus       322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             EEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence            5555555554331   3444555555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5.2e-31  Score=278.77  Aligned_cols=334  Identities=17%  Similarity=0.141  Sum_probs=194.3

Q ss_pred             CCCCCCCCCCCCce----eeeceeCC----------------CCCeEEEEeccCCccccccCCcccCCCCCceeeccCCc
Q 041497           10 GVTSSWNNSINLCQ----WTGVTCGH----------------RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNS   69 (568)
Q Consensus        10 ~~~~~~~~~~~~c~----~~~~~c~~----------------~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~   69 (568)
                      ..++.|..+.+||.    |.++.|..                ....++.++++++.+...++..+..+++|++|++++|.
T Consensus         7 ~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~   86 (597)
T 3oja_B            7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ   86 (597)
T ss_dssp             ----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC
T ss_pred             ccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC
Confidence            35678877767764    43333321                11345566666666666555556666777777777776


Q ss_pred             ccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcc
Q 041497           70 FRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPAS  149 (568)
Q Consensus        70 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  149 (568)
                      +.+..|.+|+.+++|++|++++|.+++..|..|+++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..
T Consensus        87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  166 (597)
T 3oja_B           87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT  166 (597)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh
Confidence            66555556667777777777777666666666666777777777777666444444566677777777777666666666


Q ss_pred             cCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcc
Q 041497          150 IGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR  229 (568)
Q Consensus       150 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  229 (568)
                      ++.+++|++|++++|.+.+.   .+..+++|+.|++++|.+.+.    ...+.|+.|++++|.+.. ++..   ..++|+
T Consensus       167 ~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~  235 (597)
T 3oja_B          167 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINV-VRGP---VNVELT  235 (597)
T ss_dssp             TTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCE-EECS---CCSCCC
T ss_pred             hhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccc-cccc---cCCCCC
Confidence            66667777777776666532   245566666666666655432    233456666666665542 2222   124566


Q ss_pred             eEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497          230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL  309 (568)
Q Consensus       230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  309 (568)
                      .|++++|.+++.  .++..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+...+..       +..+++|+.|
T Consensus       236 ~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~L  306 (597)
T 3oja_B          236 ILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------GQPIPTLKVL  306 (597)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-------SSCCTTCCEE
T ss_pred             EEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-------cccCCCCcEE
Confidence            666666666542  4455666666666666666655565666666666666666666554321       3345566666


Q ss_pred             EeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccc
Q 041497          310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGT  386 (568)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~  386 (568)
                      ++++|.+..+ +..+..++ +++.|++++|.+.+..   +.                  .+++|+.|++++|.+.+.
T Consensus       307 ~Ls~N~l~~i-~~~~~~l~-~L~~L~L~~N~l~~~~---~~------------------~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          307 DLSHNHLLHV-ERNQPQFD-RLENLYLDHNSIVTLK---LS------------------THHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCCCCC-GGGHHHHT-TCSEEECCSSCCCCCC---CC------------------TTCCCSEEECCSSCEEHH
T ss_pred             ECCCCCCCcc-CcccccCC-CCCEEECCCCCCCCcC---hh------------------hcCCCCEEEeeCCCCCCh
Confidence            6666655542 22233332 2555555555554331   11                  156777888888877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=8.4e-31  Score=258.75  Aligned_cols=308  Identities=26%  Similarity=0.322  Sum_probs=217.1

Q ss_pred             CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCC
Q 041497          196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN  275 (568)
Q Consensus       196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~  275 (568)
                      .+..+++|+.|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCc
Confidence            3445667777777777665 2332  2356777777777777765433  667777777777777776432  3667777


Q ss_pred             CcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccc
Q 041497          276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNL  355 (568)
Q Consensus       276 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L  355 (568)
                      |++|++++|.+.....        +..+++|+.|++++|......+. +.... +++.|++++|.+.+..+  +..    
T Consensus       112 L~~L~l~~n~i~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~--~~~----  175 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--------LANLTKMYSLNLGANHNLSDLSP-LSNMT-GLNYLTVTESKVKDVTP--IAN----  175 (347)
T ss_dssp             CSEEECTTSCCCCCGG--------GTTCTTCCEEECTTCTTCCCCGG-GTTCT-TCCEEECCSSCCCCCGG--GGG----
T ss_pred             CCEEECcCCcccCchh--------hccCCceeEEECCCCCCcccccc-hhhCC-CCcEEEecCCCcCCchh--hcc----
Confidence            7777777777665432        55667777777777754433222 33332 36666666666554332  333    


Q ss_pred             cccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCC
Q 041497          356 NALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTM  435 (568)
Q Consensus       356 ~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  435 (568)
                                    +++|++|++++|.+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+.+..
T Consensus       176 --------------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          176 --------------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             --------------CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             --------------CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence                          5667777777777764332  6777888888888887765443  677788888888888776544


Q ss_pred             CCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCC
Q 041497          436 PRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLK  515 (568)
Q Consensus       436 ~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  515 (568)
                      +  +..+..+ +.|++++|.+++.  ..+..+++|++|++++|.+++ ++....+++|+.|++++|.+++..+..+..++
T Consensus       238 ~--~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          238 P--LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             G--GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             c--hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence            3  5555555 8888888888753  468899999999999999984 44433499999999999999988888999999


Q ss_pred             CCCEEeCCCCccccCcCccccccccCCeeecccCccc
Q 041497          516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  552 (568)
                      +|+.|++++|++++..|  +..+++|+.|++++|+|+
T Consensus       312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999999999997766  889999999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.7e-30  Score=254.10  Aligned_cols=304  Identities=23%  Similarity=0.359  Sum_probs=222.9

Q ss_pred             CCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497           32 RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF  111 (568)
Q Consensus        32 ~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  111 (568)
                      ..+.+++|+++++.+....  .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++. + ..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence            3467888888888887643  47888888999998888874 333 8888888999998888873 3 358888888899


Q ss_pred             eccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccc
Q 041497          112 EASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS  191 (568)
Q Consensus       112 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (568)
                      ++++|++... +. +..+++|++|++++|...... ..+..+++|++|++++|.+....  .+..+++|+.|++++|.+.
T Consensus       116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCccc
Confidence            8888888743 33 778888888888888655433 44888888888888888876332  2778888888888888877


Q ss_pred             cCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCcc
Q 041497          192 GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFG  271 (568)
Q Consensus       192 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~  271 (568)
                      +..+ +..+++|+.+++++|.+.+..+   +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+.
T Consensus       191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~  262 (347)
T 4fmz_A          191 DISP-LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK  262 (347)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred             cccc-ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence            5443 6777888888888887764332   3367788888888888775433  67778888888888887754  3467


Q ss_pred             CCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhh
Q 041497          272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN  351 (568)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~  351 (568)
                      .+++|++|++++|.+....        .+..+++|+.|++++|.+.+..+..+...+. ++.|++++|.+++..|  +..
T Consensus       263 ~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDIS--------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSSCCCCGG--GGG
T ss_pred             cCCCcCEEEccCCccCCCh--------hhcCCCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCccccccC--hhh
Confidence            7788888888888776642        2567788888888888887776666666644 8888888888776555  666


Q ss_pred             hccccccCcccccc
Q 041497          352 LVNLNALGVEFNQL  365 (568)
Q Consensus       352 ~~~L~~l~l~~~~~  365 (568)
                      +++|+.+++++|.+
T Consensus       332 l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          332 LSKMDSADFANQVI  345 (347)
T ss_dssp             CTTCSEESSSCC--
T ss_pred             hhccceeehhhhcc
Confidence            66666666655554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.5e-31  Score=280.06  Aligned_cols=313  Identities=18%  Similarity=0.190  Sum_probs=204.4

Q ss_pred             CCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEE
Q 041497          200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWL  279 (568)
Q Consensus       200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L  279 (568)
                      +++++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..+..|+.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            467788888877765 5666666677888888888888887777778888888888888888887777777888888888


Q ss_pred             ECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccC
Q 041497          280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG  359 (568)
Q Consensus       280 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~  359 (568)
                      ++++|.+...+..      .+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++..   +..+++|+.++
T Consensus       129 ~L~~n~l~~l~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~~~l~~L~~L~  198 (597)
T 3oja_B          129 VLERNDLSSLPRG------IFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLFHAN  198 (597)
T ss_dssp             ECCSSCCCCCCTT------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred             EeeCCCCCCCCHH------HhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence            8888887766553      2567788888888888887776666666544 777888877776542   33344444455


Q ss_pred             ccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCch
Q 041497          360 VEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL  439 (568)
Q Consensus       360 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  439 (568)
                      ++.|.+...                       ...+.|+.|++++|.++...+..   .++|+.|++++|.+.+.  ..+
T Consensus       199 l~~n~l~~l-----------------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l  250 (597)
T 3oja_B          199 VSYNLLSTL-----------------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL  250 (597)
T ss_dssp             CCSSCCSEE-----------------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG
T ss_pred             cccCccccc-----------------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh
Confidence            554444322                       12234445555554443322111   13455555555555432  334


Q ss_pred             hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCC
Q 041497          440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSIT  518 (568)
Q Consensus       440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  518 (568)
                      ..+..+ +.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+. +++|+.|+|++|.++ .+|..+..+++|+
T Consensus       251 ~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~  327 (597)
T 3oja_B          251 LNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  327 (597)
T ss_dssp             GGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             ccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence            444444 666666666666666677777777777777777764 344443 677777777777776 4555666677777


Q ss_pred             EEeCCCCccccCcCccccccccCCeeecccCcccccCCC
Q 041497          519 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLF  557 (568)
Q Consensus       519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  557 (568)
                      .|++++|.++...   +..+++|+.|++++|++.|.++.
T Consensus       328 ~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          328 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             EEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence            7777777776542   45667777777777777766543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.2e-29  Score=244.00  Aligned_cols=288  Identities=22%  Similarity=0.282  Sum_probs=177.9

Q ss_pred             CCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecc
Q 041497           59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIA  138 (568)
Q Consensus        59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  138 (568)
                      ++++++++++.+. .+|..+  .++|++|++++|.+++..+..|.++++|++|++++|+++...|..+.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3444444444443 333333  1345555555555544444445555555555555555554444455555555555555


Q ss_pred             cccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc--CCC-CCCCCCCccEEEeecccccc
Q 041497          139 ENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG--MFP-PINNISSLEYIFIHRNIYHG  215 (568)
Q Consensus       139 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~-~l~~~~~L~~L~l~~~~~~~  215 (568)
                      +|.+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+ .+..+ +|+.|++++|.+. 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-  185 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence            55544 2333322  455555555555553333345555555555555555532  222 34444 6666666666655 


Q ss_pred             cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCch
Q 041497          216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD  295 (568)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (568)
                      .+|..+.   ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..++.    
T Consensus       186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----  258 (332)
T 2ft3_A          186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA----  258 (332)
T ss_dssp             SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT----
T ss_pred             ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh----
Confidence            3444432   678888888888887777788888888999999888887777778888889999998888876544    


Q ss_pred             hhhcccCCCcccEEEeccCcccCcCchhhhcc-----cccceEEEcccCccc--CCCChhhhhhccccccCccccc
Q 041497          296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANL-----STTMTGIAFGNNQIS--GFIPDGIANLVNLNALGVEFNQ  364 (568)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~l~~L~l~~~~l~--~~~~~~~~~~~~L~~l~l~~~~  364 (568)
                         .+..+++|+.|++++|+++++.+..+...     ...++.+++++|.+.  +..+..+..+++|+.+++++|+
T Consensus       259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ---hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence               26678889999999988888766665543     345888999999876  5677788888877777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.1e-29  Score=242.50  Aligned_cols=289  Identities=19%  Similarity=0.205  Sum_probs=181.1

Q ss_pred             EEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC
Q 041497           36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  115 (568)
Q Consensus        36 i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  115 (568)
                      ++.++++++.+...+. .+  .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus        33 l~~l~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             TTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CeEEEecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            3445555555554322 12  25677777777777655555677777777777777777766666777777777777777


Q ss_pred             CcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC--CCCccccccccCcEEeecccccccC
Q 041497          116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG--RIPSTRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       116 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      |+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.+.. 
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            7766 3444332  567777777776665555556666777777777666642  344555556666666665555443 


Q ss_pred             CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497          194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL  273 (568)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~  273 (568)
                                             ++..+   .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       186 -----------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          186 -----------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             -----------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             -----------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence                                   33322   2567777777777766666667777777777777777766666666677


Q ss_pred             CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcc-----cccceEEEcccCcccC--CCC
Q 041497          274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL-----STTMTGIAFGNNQISG--FIP  346 (568)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~l~~L~l~~~~l~~--~~~  346 (568)
                      ++|++|++++|.+...+.       .+..+++|+.|++++|+++++.+..+...     ...++.+++++|.+..  ..|
T Consensus       240 ~~L~~L~L~~N~l~~lp~-------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~  312 (330)
T 1xku_A          240 PHLRELHLNNNKLVKVPG-------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  312 (330)
T ss_dssp             TTCCEEECCSSCCSSCCT-------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             CCCCEEECCCCcCccCCh-------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence            777777777777665433       25566777777777777776655554322     2346778888887643  556


Q ss_pred             hhhhhhccccccCccccc
Q 041497          347 DGIANLVNLNALGVEFNQ  364 (568)
Q Consensus       347 ~~~~~~~~L~~l~l~~~~  364 (568)
                      ..|..+..++.+++++|+
T Consensus       313 ~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGGTTCCCGGGEEC----
T ss_pred             cccccccceeEEEecccC
Confidence            777777777777777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.6e-28  Score=239.08  Aligned_cols=287  Identities=19%  Similarity=0.210  Sum_probs=165.4

Q ss_pred             CccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEEC
Q 041497          202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNL  281 (568)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l  281 (568)
                      +++.++++++.+. .+|..+   .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3555555555443 344332   134555555555555444445555555555555555555444444555555555555


Q ss_pred             CCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcc
Q 041497          282 GKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVE  361 (568)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~  361 (568)
                      ++|.+...+..       +  .++                         +++|++++|.+.+..+..+..+++       
T Consensus       110 ~~n~l~~l~~~-------~--~~~-------------------------L~~L~l~~n~i~~~~~~~~~~l~~-------  148 (332)
T 2ft3_A          110 SKNHLVEIPPN-------L--PSS-------------------------LVELRIHDNRIRKVPKGVFSGLRN-------  148 (332)
T ss_dssp             CSSCCCSCCSS-------C--CTT-------------------------CCEEECCSSCCCCCCSGGGSSCSS-------
T ss_pred             CCCcCCccCcc-------c--ccc-------------------------CCEEECCCCccCccCHhHhCCCcc-------
Confidence            55554433321       0  134                         555555555555444444444333       


Q ss_pred             ccccchhhccCCCeeECccCcccc--ccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCch
Q 041497          362 FNQLAVTILKSLQMLFLHENVLQG--TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL  439 (568)
Q Consensus       362 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  439 (568)
                                 |++|++++|.++.  ..+..+..+ +|+.|++++|++++ .|..+.  ++|++|++++|.+.+..+..+
T Consensus       149 -----------L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          149 -----------MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             -----------CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred             -----------CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh
Confidence                       3333333333321  223333333 45555555555443 222221  445555555555554444444


Q ss_pred             hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcC-----
Q 041497          440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS-----  513 (568)
Q Consensus       440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~-----  513 (568)
                      ..+..+ +.|++++|.+++..+..+..+++|++|++++|+++ .+|..+. +++|+.|++++|+++...+..|..     
T Consensus       214 ~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          214 LRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             TTCTTC-SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             cCCCCC-CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence            444444 66667777777666667888899999999999888 6777666 889999999999998777666654     


Q ss_pred             -CCCCCEEeCCCCccc--cCcCccccccccCCeeecccCc
Q 041497          514 -LKSITELDLSRNNLS--GHIPQYLENLSFLSFLNLSYNH  550 (568)
Q Consensus       514 -l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~  550 (568)
                       .+.|+.|++++|++.  ...|..|..+++|+.+++++|+
T Consensus       292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             367899999999987  6777889999999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.1e-33  Score=286.63  Aligned_cols=315  Identities=18%  Similarity=0.158  Sum_probs=192.2

Q ss_pred             CcceEeecCCcccc----ccCccCCCCCCCCeEecCCCcccccccCCc-----cCCCCCcEEECCCCCCCCcCCCCchhh
Q 041497          227 NLRFFIISGNNLTG----SLQDSLSNATNLQKLDINRNLFSGKVSINF-----GGLQNLSWLNLGKNNLGTRTANDLDFI  297 (568)
Q Consensus       227 ~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~  297 (568)
                      +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+......  .+.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--PLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--HHH
Confidence            68888888887774    336677788888888888888765433322     2356788888888877654322  234


Q ss_pred             hcccCCCcccEEEeccCcccCcCchhhhc----ccccceEEEcccCcccCC----CChhhhhhccccccCccccccchhh
Q 041497          298 TLLTNCTKLEVLVLDSNRFGAVLPFSLAN----LSTTMTGIAFGNNQISGF----IPDGIANLVNLNALGVEFNQLAVTI  369 (568)
Q Consensus       298 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~  369 (568)
                      ..+..+++|++|++++|.+.+.....+..    ...+++.|++++|.+++.    ++..+..+++|+.|+++.|.+....
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            45667788999999888876654444332    123588888888887764    3455555555555555555443221


Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccccccCC----CCCCccCCCCceEEEcccCCCCCCCCCchhHHh--
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRII--  443 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--  443 (568)
                      ...             ..+..+..+++|+.|++++|.+++.    .+..+..+++|++|++++|.+.+..+..+....  
T Consensus       244 ~~~-------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  310 (461)
T 1z7x_W          244 MAE-------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  310 (461)
T ss_dssp             HHH-------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             HHH-------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence            000             0011112344555555555544432    233344455555555555554433222233221  


Q ss_pred             --hhceEEEccCCccccc----CchhhhcCCCCcEEecCCCcccccCCCccc------ccccceeecccccccc----cC
Q 041497          444 --TLSVLLNLSDNLLSGH----FPAEVGKLKNLVSLDISSNMFSGEIPTTLG------CTSLEYLCMQDNSFTG----SI  507 (568)
Q Consensus       444 --~l~~~l~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~------~~~L~~L~Ls~n~l~~----~~  507 (568)
                        ..++.|++++|.+++.    .+..+..+++|++|++++|.+++..+..+.      .++|+.|++++|.+++    .+
T Consensus       311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  390 (461)
T 1z7x_W          311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  390 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence              1226667777766644    345566778888999988888755444332      4688899999988875    56


Q ss_pred             CccCcCCCCCCEEeCCCCccccCcCcccc-----ccccCCeeecccCcccccCC
Q 041497          508 PSTLSSLKSITELDLSRNNLSGHIPQYLE-----NLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       508 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~  556 (568)
                      +..+..+++|+.|++++|++++.....+.     ....|+.|.+.++.+....+
T Consensus       391 ~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~  444 (461)
T 1z7x_W          391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  444 (461)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence            67777788899999999988754332222     23468888887777665444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.4e-28  Score=237.27  Aligned_cols=243  Identities=19%  Similarity=0.267  Sum_probs=185.4

Q ss_pred             CCceeeeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCC
Q 041497           20 NLCQWTGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLT   90 (568)
Q Consensus        20 ~~c~~~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~   90 (568)
                      ..|.+..+.|...         .+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..|.+++++++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4678888888742         2578999999999999888889999999999999999998889999999999999999


Q ss_pred             CCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC--CCCcccCCCCCCCeEEeccCCCCC
Q 041497           91 NNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG--QLPASIGNLSALQEINVNGNRLGG  168 (568)
Q Consensus        91 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~  168 (568)
                      +|.++ .+|..+.  ++|++|++++|++....+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+. 
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            99998 5665554  899999999999998888889999999999999999863  56778899999999999999987 


Q ss_pred             CCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCC
Q 041497          169 RIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS  247 (568)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  247 (568)
                      .+|..+.  ++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+. ..|..+.
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCc-cCChhhc
Confidence            4555443  788888888888776544 5566666666666666555322222 225556666666666555 3444455


Q ss_pred             CCCCCCeEecCCCcccccccCCc
Q 041497          248 NATNLQKLDINRNLFSGKVSINF  270 (568)
Q Consensus       248 ~~~~L~~L~L~~n~~~~~~~~~~  270 (568)
                      .+++|++|++++|.+++..+..|
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cCCCcCEEECCCCcCCccChhhc
Confidence            55566666666666555444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=6.6e-30  Score=249.05  Aligned_cols=267  Identities=17%  Similarity=0.240  Sum_probs=159.7

Q ss_pred             cccC-CCCCCCCCCC----CCCCCCceeeeceeCC--------CCCeEEEEeccCCccccccCCcccCCCCCceeeccCC
Q 041497            2 KSQL-QDPLGVTSSW----NNSINLCQWTGVTCGH--------RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANN   68 (568)
Q Consensus         2 ~~~~-~~~~~~~~~~----~~~~~~c~~~~~~c~~--------~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~   68 (568)
                      |.++ .||.+.++.|    +...++|.|.|+.|..        ...+++.|+++++.+.. ++..+.++++|++|++++|
T Consensus        36 k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n  114 (328)
T 4fcg_A           36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAA  114 (328)
T ss_dssp             HHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESS
T ss_pred             HHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh-cChhhhhCCCCCEEECCCC
Confidence            4445 3676777788    4567899999998842        23556666666666663 3444555666666666666


Q ss_pred             cccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCc
Q 041497           69 SFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPA  148 (568)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  148 (568)
                      .+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+...               ....
T Consensus       115 ~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~  177 (328)
T 4fcg_A          115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---------------DASG  177 (328)
T ss_dssp             CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CC
T ss_pred             Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc---------------cchh
Confidence            665 55666666666666666666666 556566666666666666655555555444320               0001


Q ss_pred             ccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCc
Q 041497          149 SIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNL  228 (568)
Q Consensus       149 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  228 (568)
                      .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+.+..+++|+.|++++|.+.+.+|..+. .+++|
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L  255 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPL  255 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCC
Confidence            1122455555555555544 444445555555555555555554333455555555555555555555554443 66677


Q ss_pred             ceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCC
Q 041497          229 RFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGT  288 (568)
Q Consensus       229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (568)
                      ++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++++.+++..+.+..
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            777777776666666667777777777777777777777777777777777777654443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.3e-31  Score=275.39  Aligned_cols=351  Identities=17%  Similarity=0.100  Sum_probs=242.3

Q ss_pred             CCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCCCCCeEecCCCcccccccCCc-cCCC-
Q 041497          201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQKLDINRNLFSGKVSINF-GGLQ-  274 (568)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~~~~-~~~~-  274 (568)
                      ++|+.|+++++.+.+.....++..+++|++|++++|.+...    .+..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34555555555544322233233566777777777766532    23445566777777777777654333222 2233 


Q ss_pred             ---CCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcc----cccceEEEcccCcccCCC--
Q 041497          275 ---NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL----STTMTGIAFGNNQISGFI--  345 (568)
Q Consensus       275 ---~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~l~~~~--  345 (568)
                         +|++|++++|.+......  .+...+..+++|++|++++|.+.+.....+...    ..++++|++++|.+++..  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH--HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCceeEEEccCCCCCHHHHH--HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence               577777777776543211  233456677777778877777665443333221    234788888888777643  


Q ss_pred             --ChhhhhhccccccCccccccchhh-----------ccCCCeeECccCccccc----cCccccCccccccccccccccc
Q 041497          346 --PDGIANLVNLNALGVEFNQLAVTI-----------LKSLQMLFLHENVLQGT----IPSFLGNLTMLTQRLLEVNDLL  408 (568)
Q Consensus       346 --~~~~~~~~~L~~l~l~~~~~~~~~-----------~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  408 (568)
                        +..+..+++|+.|++++|.+....           .++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence              455666788888888888775432           34899999999998864    4556778899999999999886


Q ss_pred             CCC-----CCCccCCCCceEEEcccCCCCCC----CCCchhHHhhhceEEEccCCcccccCchhhhc-----CCCCcEEe
Q 041497          409 GNI-----PPSIGNCKNLILLTTRKNKPSGT----MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGK-----LKNLVSLD  474 (568)
Q Consensus       409 ~~~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~-----l~~L~~L~  474 (568)
                      +..     +..+..+++|++|++++|.+.+.    ++..+..+..+ +.|++++|.+++..+..+..     .++|++|+
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            543     22233589999999999988764    33344445566 99999999998655544543     37999999


Q ss_pred             cCCCccccc----CCCccc-ccccceeecccccccccCCccCcC-----CCCCCEEeCCCCcccc----CcCcccccccc
Q 041497          475 ISSNMFSGE----IPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS-----LKSITELDLSRNNLSG----HIPQYLENLSF  540 (568)
Q Consensus       475 ls~n~l~~~----~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~  540 (568)
                      +++|.+++.    ++..+. +++|+.|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            999998865    333444 799999999999998765544432     6799999999999986    67888899999


Q ss_pred             CCeeecccCccccc
Q 041497          541 LSFLNLSYNHFESK  554 (568)
Q Consensus       541 L~~L~l~~n~i~~~  554 (568)
                      |++|++++|+|++.
T Consensus       400 L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          400 LRELDLSNNCLGDA  413 (461)
T ss_dssp             CCEEECCSSSCCHH
T ss_pred             ccEEECCCCCCCHH
Confidence            99999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=4.3e-29  Score=241.92  Aligned_cols=248  Identities=25%  Similarity=0.398  Sum_probs=183.7

Q ss_pred             CCCceeeccCCcccc--cCCcccCCCCCCcEEeCCC-CcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497           58 SFLRSINLANNSFRA--EIPHEVGNLFRLQNLTLTN-NYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL  134 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  134 (568)
                      .++++|+++++.+.+  .+|..+.++++|++|++++ |.+++..|..|..+++|++|++++|++.+.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            478999999999988  7899999999999999995 8888889999999999999999999998889999999999999


Q ss_pred             eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccc-cCcEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497          135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR-NLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI  212 (568)
Q Consensus       135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  212 (568)
                      |++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ .|+.|++++|.+.+..+ .+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999988899999999999999999999878888888887 88888888888875554 455554 6666666666


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCC
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN  292 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  292 (568)
                      +.+..+..+. .+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+.
T Consensus       209 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEECCGGGCC-TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccCcCCHHHh-cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            6544333332 556666666666665544333 45555666666666666555555555555555555555555433222


Q ss_pred             CchhhhcccCCCcccEEEeccCc
Q 041497          293 DLDFITLLTNCTKLEVLVLDSNR  315 (568)
Q Consensus       293 ~~~~~~~l~~~~~L~~L~l~~~~  315 (568)
                             ...+++|+.+++++|+
T Consensus       287 -------~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          287 -------GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -------STTGGGSCGGGTCSSS
T ss_pred             -------CccccccChHHhcCCC
Confidence                   2334445555554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=7e-28  Score=234.74  Aligned_cols=290  Identities=15%  Similarity=0.209  Sum_probs=213.6

Q ss_pred             cccCCCCCCCCCCCCCC--CCCceeeeceeCCC--CCeEEEEeccCCccccccCCcc--cCCCCCceeeccCCcccccCC
Q 041497            2 KSQLQDPLGVTSSWNNS--INLCQWTGVTCGHR--HQRVIGLDLRHQSIGGFLSPFV--GNLSFLRSINLANNSFRAEIP   75 (568)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~c~~~~~~c~~~--~~~i~~L~l~~~~i~~~~~~~~--~~~~~L~~L~ls~~~~~~~~~   75 (568)
                      |.++.|+.+++..|+.+  .++|.|.+.-|...  ...+-  ...+..... .+..+  ...+++++|++++|.+. .+|
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~-~~~~l~~~~~~~l~~L~L~~n~l~-~lp   97 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFP   97 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHH-HHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhh-hHHHHhcccccceeEEEccCCCch-hcC
Confidence            34566777788888763  47888765444110  00000  011111110 01111  23467888888888877 677


Q ss_pred             cccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCC
Q 041497           76 HEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA  155 (568)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  155 (568)
                      ..+.++++|++|++++|.++ .+|..+..+++|++|++++|++. .+|..+..+++|++|++++|...+.+|..+..   
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~---  172 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS---  172 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE---
T ss_pred             hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh---
Confidence            77777888888888888887 67777788888888888888777 66777777777888877777766665554432   


Q ss_pred             CCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecC
Q 041497          156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG  235 (568)
Q Consensus       156 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  235 (568)
                         .         ..+..+..+++|+.|++++|.+......+..+++|+.|++++|.+. .++..+. .+++|++|++++
T Consensus       173 ---~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls~  238 (328)
T 4fcg_A          173 ---T---------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRG  238 (328)
T ss_dssp             ---E---------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECTT
T ss_pred             ---c---------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECcC
Confidence               0         1223466799999999999999855448899999999999999998 4665544 899999999999


Q ss_pred             CccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCc
Q 041497          236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR  315 (568)
Q Consensus       236 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  315 (568)
                      |.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|++....+.      .+..+++++.+++..+.
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS------LIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG------GGGGSCTTCEEECCGGG
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH------HHhhccCceEEeCCHHH
Confidence            999989999999999999999999999888898899999999999999998775553      57899999999999876


Q ss_pred             ccCcC
Q 041497          316 FGAVL  320 (568)
Q Consensus       316 ~~~~~  320 (568)
                      +....
T Consensus       313 ~~~l~  317 (328)
T 4fcg_A          313 QAQLD  317 (328)
T ss_dssp             SCC--
T ss_pred             HHHHh
Confidence            65543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.8e-27  Score=232.83  Aligned_cols=285  Identities=17%  Similarity=0.191  Sum_probs=202.2

Q ss_pred             CCCCCCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCc
Q 041497           14 SWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY   93 (568)
Q Consensus        14 ~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~   93 (568)
                      .|..+...|.|.++ |          +.+++.+...+. .+.  ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus        22 ~~~~~~~~C~~~~~-c----------~~~~~~l~~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~   87 (353)
T 2z80_A           22 SSNQASLSCDRNGI-C----------KGSSGSLNSIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG   87 (353)
T ss_dssp             -----CCEECTTSE-E----------ECCSTTCSSCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCccCCCCCCCeE-e----------eCCCCCcccccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence            44555566766543 3          556666666443 222  589999999999887666688999999999999999


Q ss_pred             CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCC-cccCCCCCCCeEEeccCC-CCCCCC
Q 041497           94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLP-ASIGNLSALQEINVNGNR-LGGRIP  171 (568)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~  171 (568)
                      +++..+..|.++++|++|++++|+++...+..+.++++|++|++++|.+.+... ..+..+++|++|++++|. +....+
T Consensus        88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~  167 (353)
T 2z80_A           88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR  167 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence            987777889999999999999999986555568889999999999998885433 478889999999999984 554556


Q ss_pred             ccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCC---
Q 041497          172 STRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS---  247 (568)
Q Consensus       172 ~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---  247 (568)
                      ..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. .++..++..+++|+.|++++|.+.+..+..+.   
T Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence            678888899999999888887755 7788888888888888764 45554444577888888888887765443332   


Q ss_pred             CCCCCCeEecCCCccccc----ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCc
Q 041497          248 NATNLQKLDINRNLFSGK----VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAV  319 (568)
Q Consensus       248 ~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  319 (568)
                      ..+.++.++++++.+.+.    .+..+..+++|++|++++|.+..++..      .+..+++|+.|++++|++...
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCCC
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccCc
Confidence            345567777777666542    233455666777777777766654432      234566666666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.3e-29  Score=268.94  Aligned_cols=455  Identities=15%  Similarity=0.058  Sum_probs=214.5

Q ss_pred             CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCccc---ccCCcccC------------CCCC
Q 041497           19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFR---AEIPHEVG------------NLFR   83 (568)
Q Consensus        19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~---~~~~~~~~------------~l~~   83 (568)
                      ..|+.|+++.+..    -+.+.+..+ ....+...+.++++|++|+++++...   +.+|..+.            .+++
T Consensus        39 ~vck~W~~~~~~~----~~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  113 (592)
T 3ogk_B           39 LVCRRWFKIDSET----REHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ  113 (592)
T ss_dssp             TSCHHHHHHHHHH----CCEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             HHhHHHHHhhhcc----ccEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence            4455798775431    122333322 22233445678888999999875421   11222221            4455


Q ss_pred             CcEEeCCCCcCCCCCCccccc-CCC-CcEEeccCCcc-cc-cCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeE
Q 041497           84 LQNLTLTNNYFSGKIPTNLSR-CSN-LVKFEASNNKL-AG-ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI  159 (568)
Q Consensus        84 L~~L~l~~n~~~~~~~~~~~~-l~~-L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  159 (568)
                      |++|++++|.+++..+..+.. ++. |++|++++|.. .. .++.....+++|++|++++|.+.+.....          
T Consensus       114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~----------  183 (592)
T 3ogk_B          114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW----------  183 (592)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH----------
T ss_pred             CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH----------
Confidence            555555555444333333332 222 55555555441 10 11111224455555555555443221100          


Q ss_pred             EeccCCCCCCCCccccccccCcEEeecccccccCC----C-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeec
Q 041497          160 NVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF----P-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIIS  234 (568)
Q Consensus       160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  234 (568)
                                ++..+..+++|+.|+++++.+.+..    + .+..+++|+.|++++|.+.+ ++.. +..+++|+.++++
T Consensus       184 ----------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~  251 (592)
T 3ogk_B          184 ----------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGG  251 (592)
T ss_dssp             ----------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEEC
T ss_pred             ----------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhccc
Confidence                      1112233444444544444443111    1 22334455555555544432 3322 2256667777766


Q ss_pred             CCccc---cccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEe
Q 041497          235 GNNLT---GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVL  311 (568)
Q Consensus       235 ~~~~~---~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  311 (568)
                      .....   ...+..+..+++|+.++++++... ..+..+..+++|++|++++|.+....     +...+..+++|+.|++
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~-----~~~~~~~~~~L~~L~L  325 (592)
T 3ogk_B          252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED-----HCTLIQKCPNLEVLET  325 (592)
T ss_dssp             BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH-----HHHHHTTCTTCCEEEE
T ss_pred             ccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH-----HHHHHHhCcCCCEEec
Confidence            43211   123345566778888888775432 34445666778888888877743321     2233567777787777


Q ss_pred             ccCcccCcCchhhhcccccceEEEccc-----------CcccCCCChhhhhhccccccCccccccchhhccCCCeeECcc
Q 041497          312 DSNRFGAVLPFSLANLSTTMTGIAFGN-----------NQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHE  380 (568)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~l~~L~l~~-----------~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~  380 (568)
                      + +.+.+.....+....+++++|++++           +.+++.....+                 ...+++|++|+++.
T Consensus       326 ~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-----------------~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          326 R-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-----------------AQGCQELEYMAVYV  387 (592)
T ss_dssp             E-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-----------------HHHCTTCSEEEEEE
T ss_pred             c-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-----------------HhhCccCeEEEeec
Confidence            7 3333222222222223366666663           22222111110                 01155666666666


Q ss_pred             CccccccCccccC-cccccccccc----cccccCC-----CCCCccCCCCceEEEcccCC--CCCCCCCchhHHhhhceE
Q 041497          381 NVLQGTIPSFLGN-LTMLTQRLLE----VNDLLGN-----IPPSIGNCKNLILLTTRKNK--PSGTMPRQLPRIITLSVL  448 (568)
Q Consensus       381 ~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~  448 (568)
                      +.+++.....+.. +++|+.|+++    .+.+++.     .+..+.++++|+.|++++|.  +.+..+..+....+.++.
T Consensus       388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            6666544444443 6667777765    3344432     11124456777777765433  332222222221112255


Q ss_pred             EEccCCcccccC-chhhhcCCCCcEEecCCCcccccCCCcc-c-ccccceeecccccccccCCccC-cCCCCCCEEeCCC
Q 041497          449 LNLSDNLLSGHF-PAEVGKLKNLVSLDISSNMFSGEIPTTL-G-CTSLEYLCMQDNSFTGSIPSTL-SSLKSITELDLSR  524 (568)
Q Consensus       449 l~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~-~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~  524 (568)
                      |++++|++++.. +..+..+++|++|++++|.+++.....+ . +++|+.|++++|++++.....+ ..+|.+....+..
T Consensus       468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            666666555322 2234556666666666666543322222 2 5666666666666654433333 2445555444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.8e-27  Score=232.87  Aligned_cols=278  Identities=18%  Similarity=0.173  Sum_probs=161.3

Q ss_pred             cceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCccc
Q 041497          228 LRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLE  307 (568)
Q Consensus       228 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~  307 (568)
                      ....+.+++.++. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+....+.      .+..+++|+
T Consensus        33 ~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~  103 (353)
T 2z80_A           33 NGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED------SFSSLGSLE  103 (353)
T ss_dssp             TSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT------TTTTCTTCC
T ss_pred             CeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh------hcCCCCCCC
Confidence            3344555555542 232221  3566666666666555544555566666666666655544332      244555566


Q ss_pred             EEEeccCcccCcCchhhhcccccceEEEcccCcccCCCC-hhhhhhccccccCccccccchhhccCCCeeECccC-cccc
Q 041497          308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHEN-VLQG  385 (568)
Q Consensus       308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~-~~~~  385 (568)
                      +|++++|+++++.+..+..... ++.|++++|.+.+..+ ..+..                  +++|++|++++| .+..
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~------------------l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSH------------------LTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTT------------------CTTCCEEEEEESSSCCE
T ss_pred             EEECCCCcCCcCCHhHhCCCcc-CCEEECCCCCCcccCchhhhcc------------------CCCCcEEECCCCccccc
Confidence            6666666555543333333322 4444444444443222 22333                  234556666655 3444


Q ss_pred             ccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497          386 TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG  465 (568)
Q Consensus       386 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~  465 (568)
                      ..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|                         .++......+.
T Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~  219 (353)
T 2z80_A          165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-------------------------QHILLLEIFVD  219 (353)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-------------------------CSTTHHHHHHH
T ss_pred             cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-------------------------ccccchhhhhh
Confidence            44455666666666666666666655666666666655555554                         44322223344


Q ss_pred             cCCCCcEEecCCCcccccCCCccc----ccccceeecccccccc----cCCccCcCCCCCCEEeCCCCccccCcCccccc
Q 041497          466 KLKNLVSLDISSNMFSGEIPTTLG----CTSLEYLCMQDNSFTG----SIPSTLSSLKSITELDLSRNNLSGHIPQYLEN  537 (568)
Q Consensus       466 ~l~~L~~L~ls~n~l~~~~~~~~~----~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  537 (568)
                      .+++|++|++++|.+++..+..+.    ...++.++++++.+.+    .+|..+..+++|+.|++++|.++...+..|..
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~  299 (353)
T 2z80_A          220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR  299 (353)
T ss_dssp             HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc
Confidence            567777777777777654433332    4556666666666554    45667888899999999999998655555688


Q ss_pred             cccCCeeecccCcccccCCCC
Q 041497          538 LSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       538 l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      +++|+.|++++|++.|.||..
T Consensus       300 l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          300 LTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             CTTCCEEECCSSCBCCCHHHH
T ss_pred             CCCCCEEEeeCCCccCcCCCc
Confidence            999999999999999998844

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-26  Score=223.56  Aligned_cols=251  Identities=22%  Similarity=0.224  Sum_probs=181.0

Q ss_pred             EEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCC--Chhhhhhccc
Q 041497          278 WLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI--PDGIANLVNL  355 (568)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~~~L  355 (568)
                      .++.+++.+..++..         ..++++.|++++|.++.+.+..+...+. ++.|++++|.+....  +..+..    
T Consensus        11 ~l~c~~~~l~~ip~~---------~~~~l~~L~L~~n~l~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~----   76 (306)
T 2z66_A           11 EIRCNSKGLTSVPTG---------IPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFG----   76 (306)
T ss_dssp             EEECCSSCCSSCCSC---------CCTTCCEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCEEEEEEHHHHS----
T ss_pred             EEEcCCCCcccCCCC---------CCCCCCEEECCCCccCccCHhHhhcccc-CCEEECCCCccCcccCccccccc----
Confidence            455555555544432         1245555666555555443333333322 555555555544211  222222    


Q ss_pred             cccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCC-CCccCCCCceEEEcccCCCCCC
Q 041497          356 NALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGT  434 (568)
Q Consensus       356 ~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~  434 (568)
                                    +++|++|++++|.+. .++..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus        77 --------------~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           77 --------------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             --------------CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             --------------ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence                          567788888888776 345567778888888888888876554 5677788888888888888777


Q ss_pred             CCCchhHHhhhceEEEccCCcccc-cCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCc
Q 041497          435 MPRQLPRIITLSVLLNLSDNLLSG-HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLS  512 (568)
Q Consensus       435 ~~~~~~~~~~l~~~l~Ls~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~  512 (568)
                      .+..+..+..+ +.|++++|.+++ ..+..+..+++|++|++++|.+++..|..+. +++|+.|++++|.+++..+..+.
T Consensus       142 ~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          142 FNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             STTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             chhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence            77777777766 888888888875 4677888889999999999998877777776 88999999999999877777888


Q ss_pred             CCCCCCEEeCCCCccccCcCccccccc-cCCeeecccCcccccCCCC
Q 041497          513 SLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       513 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~  558 (568)
                      .+++|+.|++++|.+++..+..+..++ +|+.|++++|++.|.|+..
T Consensus       221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            889999999999999888888888884 8999999999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.6e-26  Score=222.23  Aligned_cols=230  Identities=17%  Similarity=0.189  Sum_probs=180.6

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCC--CCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK--IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL  135 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  135 (568)
                      +++++|++++|.++...+..+.++++|++|++++|.++..  .+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            5788888888888744444567888888888888877622  2455667888888888888877 456667788888888


Q ss_pred             ecccccCCCCCC-cccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc-CCC-CCCCCCCccEEEeeccc
Q 041497          136 NIAENHLRGQLP-ASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG-MFP-PINNISSLEYIFIHRNI  212 (568)
Q Consensus       136 ~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~-~l~~~~~L~~L~l~~~~  212 (568)
                      ++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..+ .+..+++|+.|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            888888775443 567788888888888888876677778888888888888888876 333 77888888888888888


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCC-CCcEEECCCCCCCCc
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ-NLSWLNLGKNNLGTR  289 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~  289 (568)
                      +.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|++...
T Consensus       187 l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          187 LEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEECTTTT-TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCCcCHHHh-cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            875444444 4788999999999999877777788899999999999999888888888874 899999999988653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=227.48  Aligned_cols=253  Identities=21%  Similarity=0.246  Sum_probs=177.4

Q ss_pred             CCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497          252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM  331 (568)
Q Consensus       252 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (568)
                      ...++..+..+..++ ..+  .++++.|++++|.+......      .+..+++|+.|++++|.+.++.+..+.++.. |
T Consensus        45 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L  114 (440)
T 3zyj_A           45 FSKVICVRKNLREVP-DGI--STNTRLLNLHENQIQIIKVN------SFKHLRHLEILQLSRNHIRTIEIGAFNGLAN-L  114 (440)
T ss_dssp             SCEEECCSCCCSSCC-SCC--CTTCSEEECCSCCCCEECTT------TTSSCSSCCEEECCSSCCCEECGGGGTTCSS-C
T ss_pred             CCEEEeCCCCcCcCC-CCC--CCCCcEEEccCCcCCeeCHH------HhhCCCCCCEEECCCCcCCccChhhccCCcc-C
Confidence            456777777776433 323  26778888888887776543      3567777777777777776665555555433 6


Q ss_pred             eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCccccccccccccc-ccCC
Q 041497          332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND-LLGN  410 (568)
Q Consensus       332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~  410 (568)
                      +.|++++|.+++..+..|..+                  ++|++|++++|.+....+..|..+++|+.|+++++. +...
T Consensus       115 ~~L~L~~n~l~~~~~~~~~~l------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          115 NTLELFDNRLTTIPNGAFVYL------------------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             CEEECCSSCCSSCCTTTSCSC------------------SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CEEECCCCcCCeeCHhHhhcc------------------ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence            666666665554444444332                  345555555555554444455566666666665532 3323


Q ss_pred             CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-
Q 041497          411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-  489 (568)
Q Consensus       411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-  489 (568)
                      .+..+.++++|++|                         ++++|.++ .+| .+..+++|++|++++|++++..+..+. 
T Consensus       177 ~~~~~~~l~~L~~L-------------------------~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          177 SEGAFEGLSNLRYL-------------------------NLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             CTTTTTTCSSCCEE-------------------------ECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             CcchhhcccccCee-------------------------cCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc
Confidence            33345555555555                         55555554 223 467889999999999999977788887 


Q ss_pred             ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      +++|+.|++++|.++...+..|.++++|+.|++++|.++...++.|..+++|+.|++++|++.|.|...|
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~  299 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW  299 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence            9999999999999998888999999999999999999998888889999999999999999999998664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=1.7e-28  Score=260.52  Aligned_cols=389  Identities=13%  Similarity=0.048  Sum_probs=221.6

Q ss_pred             CCCCCCeEEeccCCCCCCCCccccc-ccc-CcEEeecccccccC--CC-CCCCCCCccEEEeecccccccCC---CcccC
Q 041497          152 NLSALQEINVNGNRLGGRIPSTRSH-VRN-LISFNVGLNQFSGM--FP-PINNISSLEYIFIHRNIYHGSLP---LDIGV  223 (568)
Q Consensus       152 ~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~~~~--~~-~l~~~~~L~~L~l~~~~~~~~~~---~~~~~  223 (568)
                      .+++|++|++++|.+.+..+..+.. ++. |++|++++|.....  .. ....+++|++|++++|.+.+.-.   ..+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4566666666666554433334433 333 66676666652111  01 22356677777777766543211   11223


Q ss_pred             CCCCcceEeecCCcccc----ccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhc
Q 041497          224 NLPNLRFFIISGNNLTG----SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL  299 (568)
Q Consensus       224 ~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (568)
                      .+++|++|++++|.+.+    ..+..+..+++|++|++++|.+.+. +..+..+++|++|+++.........   .....
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~  265 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMP---EKYMN  265 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCT---TSSSC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchH---HHHHH
Confidence            56788888888887752    2333445678888888888887753 3556778888888887533221111   12234


Q ss_pred             ccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCC-hhhhhhccccccCccccccchh-------hcc
Q 041497          300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIP-DGIANLVNLNALGVEFNQLAVT-------ILK  371 (568)
Q Consensus       300 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~-------~~~  371 (568)
                      +..+++|+.++++++... ..+..+... ++++.|++++|.+++... ..+..+++|+.|+++ +.+...       .++
T Consensus       266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPN-EMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK  342 (592)
T ss_dssp             CCCCTTCCEEEETTCCTT-TGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred             hhccccccccCccccchh-HHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence            667788888888775322 233333333 348888888888654333 345778888888887 333222       278


Q ss_pred             CCCeeECcc-----------CccccccC-ccccCcccccccccccccccCCCCCCccC-CCCceEEEcc----cCCCCCC
Q 041497          372 SLQMLFLHE-----------NVLQGTIP-SFLGNLTMLTQRLLEVNDLLGNIPPSIGN-CKNLILLTTR----KNKPSGT  434 (568)
Q Consensus       372 ~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~  434 (568)
                      +|++|++++           +.+++... .....+++|+.|+++.+.+++..+..+.. +++|+.|+++    .+.+.+.
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            888888883           44543322 22445788888888777776655555544 7788888886    3344332


Q ss_pred             -----CCCchhHHhhhceEEEccCCc--ccccCchhhh-cCCCCcEEecCCCcccccC-CCccc-ccccceeeccccccc
Q 041497          435 -----MPRQLPRIITLSVLLNLSDNL--LSGHFPAEVG-KLKNLVSLDISSNMFSGEI-PTTLG-CTSLEYLCMQDNSFT  504 (568)
Q Consensus       435 -----~~~~~~~~~~l~~~l~Ls~n~--l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~-~~~~~-~~~L~~L~Ls~n~l~  504 (568)
                           ++..+..+..+ +.|++++|.  +++..+..+. .+++|++|++++|.+++.. +.... +++|+.|++++|.++
T Consensus       423 p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             hHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence                 11112333344 667775433  4433333333 3667777777777665422 22222 667777777777665


Q ss_pred             ccC-CccCcCCCCCCEEeCCCCccccCcCccc-cccccCCeeeccc
Q 041497          505 GSI-PSTLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSY  548 (568)
Q Consensus       505 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~  548 (568)
                      +.. +..+..+++|+.|++++|+++......+ ..++.+....+..
T Consensus       502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            432 2333456677777777777665433333 2445555444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.2e-25  Score=215.10  Aligned_cols=185  Identities=25%  Similarity=0.246  Sum_probs=101.7

Q ss_pred             CCeeECccCccccccCccccCccccccccccccc-ccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEc
Q 041497          373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND-LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL  451 (568)
Q Consensus       373 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~L  451 (568)
                      |++|++++|.+++..+..+..+++|+.|++++|. ++...+..+..+++|++|++++|.+.+..+..+..+..+ +.|++
T Consensus        58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l  136 (285)
T 1ozn_A           58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYL  136 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred             CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEEC
Confidence            3444444444443334444444445555554443 433334444445555555555555444444444444444 55555


Q ss_pred             cCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497          452 SDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH  530 (568)
Q Consensus       452 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (568)
                      ++|.+++..+..+..+++|++|++++|++++..+..+. +++|+.|++++|.+++..|..|..+++|+.|++++|.+++.
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence            55555544444556666666666666666644444444 66666666666666655566666666666666666666655


Q ss_pred             cCccccccccCCeeecccCcccccCCCC
Q 041497          531 IPQYLENLSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       531 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      .++.+..+++|+.|++++|++.|.|+..
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CHHHcccCcccCEEeccCCCccCCCCcH
Confidence            5555666666666666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.1e-25  Score=227.97  Aligned_cols=253  Identities=23%  Similarity=0.262  Sum_probs=163.6

Q ss_pred             CCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497          252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM  331 (568)
Q Consensus       252 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (568)
                      ...++.++..++.+ |..+  .++++.|++++|.+....+.      .+..+++|+.|++++|.+.++.+..+.++.. |
T Consensus        56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L  125 (452)
T 3zyi_A           56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQAD------TFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-L  125 (452)
T ss_dssp             SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTT------TTTTCTTCCEEECCSSCCCEECTTTTTTCTT-C
T ss_pred             CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHH------HcCCCCCCCEEECCCCccCCcChhhccCccc-C
Confidence            34566666666533 3222  25667777777776665443      2556666666666666665554444444332 4


Q ss_pred             eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccc-cccCC
Q 041497          332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN-DLLGN  410 (568)
Q Consensus       332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~  410 (568)
                      +.|++++|.+++..+..+..                  +++|++|++++|.++...+..|..+++|+.|+++++ .+...
T Consensus       126 ~~L~L~~n~l~~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          126 NTLELFDNWLTVIPSGAFEY------------------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             CEEECCSSCCSBCCTTTSSS------------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CEEECCCCcCCccChhhhcc------------------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence            44454444444433333332                  223444444444444333334444555555555442 22222


Q ss_pred             CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-
Q 041497          411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-  489 (568)
Q Consensus       411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-  489 (568)
                      .+..+.++++|                         +.|++++|.+++. + .+..+++|++|++++|++++..|..+. 
T Consensus       188 ~~~~~~~l~~L-------------------------~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          188 SEGAFEGLFNL-------------------------KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG  240 (452)
T ss_dssp             CTTTTTTCTTC-------------------------CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred             ChhhccCCCCC-------------------------CEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC
Confidence            22234444444                         5556666666533 2 467788999999999999877788787 


Q ss_pred             ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      +++|+.|++++|.++...+..|..+++|+.|++++|.++...++.|..+++|+.|++++|++.|.|...|
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~  310 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW  310 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence            8999999999999998888899999999999999999998888888999999999999999999998664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.5e-25  Score=224.82  Aligned_cols=228  Identities=23%  Similarity=0.235  Sum_probs=132.6

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      +++++|++++|.++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45666666666666555556666666666666666666555555666666666666666665444444555666666666


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCCCC-CccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccccccc
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRI-PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS  216 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  216 (568)
                      ++|.+....+..+..+++|++|++++|...+.+ +..+..+++|+.|++++|.+.+. +.+.                  
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~------------------  215 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLT------------------  215 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCT------------------
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cccc------------------
Confidence            666655444445556666666666553322222 22344555555555555544422 1222                  


Q ss_pred             CCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497          217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF  296 (568)
Q Consensus       217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (568)
                             .+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+......    
T Consensus       216 -------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----  284 (452)
T 3zyi_A          216 -------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD----  284 (452)
T ss_dssp             -------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT----
T ss_pred             -------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH----
Confidence                   455666666666666665566666666666666666666666666666666666666666666655443    


Q ss_pred             hhcccCCCcccEEEeccCccc
Q 041497          297 ITLLTNCTKLEVLVLDSNRFG  317 (568)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~~  317 (568)
                        .+..+++|+.|++++|.+.
T Consensus       285 --~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          285 --LFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             --SSTTCTTCCEEECCSSCEE
T ss_pred             --HhccccCCCEEEccCCCcC
Confidence              2445666677777666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=7.2e-25  Score=209.68  Aligned_cols=223  Identities=20%  Similarity=0.181  Sum_probs=122.2

Q ss_pred             EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      +.++.+++.+...+.   .-.++|++|++++|.++...+..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            455556655554332   12356777777777766555556666777777777776666555666666666666666666


Q ss_pred             c-ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC
Q 041497          117 K-LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP  195 (568)
Q Consensus       117 ~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (568)
                      + +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.    
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  166 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS----  166 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc----
Confidence            5 55444555666666666666666665554555555566666666555554333233333333333333333222    


Q ss_pred             CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCC
Q 041497          196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN  275 (568)
Q Consensus       196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~  275 (568)
                                          .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus       167 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          167 --------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (285)
T ss_dssp             --------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             --------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence                                222222224555566666666555555555555555555555555555444444444455


Q ss_pred             CcEEECCCCCC
Q 041497          276 LSWLNLGKNNL  286 (568)
Q Consensus       276 L~~L~l~~~~~  286 (568)
                      |++|++++|++
T Consensus       227 L~~L~l~~N~~  237 (285)
T 1ozn_A          227 LQYLRLNDNPW  237 (285)
T ss_dssp             CCEEECCSSCE
T ss_pred             cCEEeccCCCc
Confidence            55555554444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=9.8e-25  Score=222.16  Aligned_cols=245  Identities=20%  Similarity=0.213  Sum_probs=147.6

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  117 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  117 (568)
                      .++.++..+...+. .+.  +++++|++++|.+....+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus        47 ~v~c~~~~l~~iP~-~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLREVPD-GIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCSSCCS-CCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCC-CCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            44455555544332 221  466777777777766666667777777777777777765555666777777777777777


Q ss_pred             ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCC-CccccccccCcEEeecccccccCCCC
Q 041497          118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI-PSTRSHVRNLISFNVGLNQFSGMFPP  196 (568)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (568)
                      ++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.....+ +..+..+++|+.|++++|.+... +.
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~  202 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PN  202 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cc
Confidence            76554556666777777777777666555556666777777777664332222 23455566666666666655422 12


Q ss_pred             CCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCC
Q 041497          197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNL  276 (568)
Q Consensus       197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L  276 (568)
                      +.                         .+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|
T Consensus       203 ~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          203 LT-------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             CT-------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             cC-------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence            22                         45556666666666665555566666666666666666665555556666666


Q ss_pred             cEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCccc
Q 041497          277 SWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG  317 (568)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (568)
                      +.|++++|.+......      .+..+++|+.|++++|.+.
T Consensus       258 ~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          258 VEINLAHNNLTLLPHD------LFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CEEECTTSCCCCCCTT------TTSSCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCCCccChh------HhccccCCCEEEcCCCCcc
Confidence            6666666666554443      2445566666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.9e-27  Score=227.53  Aligned_cols=248  Identities=20%  Similarity=0.196  Sum_probs=138.7

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCccc-ccCCcccC-------CCCCCcEEeCCCCcCCCCCCccc--c
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFR-AEIPHEVG-------NLFRLQNLTLTNNYFSGKIPTNL--S  103 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~  103 (568)
                      +.++.+++++|.+  ..+..+...  |++|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            4455556666655  233333322  666666666553 23444433       46666666666666665555554  5


Q ss_pred             cCCCCcEEeccCCcccccCchhhcCc-----CcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCC--CCccccc
Q 041497          104 RCSNLVKFEASNNKLAGESPAEIGNL-----LKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR--IPSTRSH  176 (568)
Q Consensus       104 ~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~  176 (568)
                      .+++|++|++++|++.+. |..+..+     ++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  .+..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--  195 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--  195 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--
Confidence            666666666666666544 5555544     5666666666666555555556666666666666554321  11122  


Q ss_pred             cccCcEEeecccccccCCCCCCCCCCccEEEeecccccc--cCCCcccCCCCCcceEeecCCccccccC-ccCCCCCCCC
Q 041497          177 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG--SLPLDIGVNLPNLRFFIISGNNLTGSLQ-DSLSNATNLQ  253 (568)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~  253 (568)
                                         .+..+++|+.|++++|.+.+  .++..++..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus       196 -------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          196 -------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             -------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             -------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence                               12344444555554444431  2233333355677777777777665443 3445566777


Q ss_pred             eEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497          254 KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA  318 (568)
Q Consensus       254 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (568)
                      .|++++|.++ ..|..+.  ++|++|++++|.+...+.        +..+++|+.|++++|++++
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~--------~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS--------PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC--------TTTSCEEEEEECTTCTTTC
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh--------HhhCCCCCEEeccCCCCCC
Confidence            7777777776 3333333  677777777777766521        4566777777777777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=5.9e-24  Score=222.53  Aligned_cols=291  Identities=21%  Similarity=0.228  Sum_probs=204.7

Q ss_pred             CCCCCCCCCCCCceeeec--------eeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCC
Q 041497           10 GVTSSWNNSINLCQWTGV--------TCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNL   81 (568)
Q Consensus        10 ~~~~~~~~~~~~c~~~~~--------~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l   81 (568)
                      .+.+.|....++|.|.+.        .|.  ...++.|+++++.+...+ ..+.  ++|++|++++|.++ .+|.   .+
T Consensus        10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n~L~~lp-~~l~--~~L~~L~L~~N~l~-~lp~---~l   80 (622)
T 3g06_A           10 AVWSAWRRAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGESGLTTLP-DCLP--AHITTLVIPDNNLT-SLPA---LP   80 (622)
T ss_dssp             CHHHHHHHTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSSCCSCCC-SCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred             HHHHHHHhcCCcchhccccccCccccccc--CCCCcEEEecCCCcCccC-hhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence            455678777889998542        332  245889999999988543 3343  78999999999887 4665   57


Q ss_pred             CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497           82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV  161 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  161 (568)
                      ++|++|++++|.++ .+|.   .+++|++|++++|+++. +|.   .+++|++|++++|.+.+ +|..   +++|++|++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence            89999999999988 4555   67899999999998874 444   57889999999998884 4443   488999999


Q ss_pred             ccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc
Q 041497          162 NGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS  241 (568)
Q Consensus       162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  241 (568)
                      ++|.+.+ +|.   ..++|+.|++++|.+....   ..+++|+.|++++|.+.+ ++.    ..++|+.|++++|.++..
T Consensus       149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l  216 (622)
T 3g06_A          149 SDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSL  216 (622)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC
T ss_pred             cCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccccc
Confidence            9998873 443   3467888888888877643   445777888887777663 443    346777777777777633


Q ss_pred             cCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCc
Q 041497          242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP  321 (568)
Q Consensus       242 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (568)
                       +.   .+++|+.|++++|.++++.    ..+++|+.|++++|.+..++.          .+++|+.|++++|.++.+ |
T Consensus       217 -~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~L~~l-p  277 (622)
T 3g06_A          217 -PA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQLTRL-P  277 (622)
T ss_dssp             -CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCCSC-C
T ss_pred             -CC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCCCCcC-C
Confidence             22   2467777778777776533    345677777777777765442          346677777777777743 4


Q ss_pred             hhhhcccccceEEEcccCcccCCCChhhhhhc
Q 041497          322 FSLANLSTTMTGIAFGNNQISGFIPDGIANLV  353 (568)
Q Consensus       322 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~  353 (568)
                      ..+..++. ++.|++++|.+++..+..+..++
T Consensus       278 ~~l~~l~~-L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          278 ESLIHLSS-ETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             GGGGGSCT-TCEEECCSCCCCHHHHHHHHHHH
T ss_pred             HHHhhccc-cCEEEecCCCCCCcCHHHHHhcc
Confidence            44555543 77777777777766666555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.2e-27  Score=254.21  Aligned_cols=438  Identities=14%  Similarity=0.102  Sum_probs=204.9

Q ss_pred             eeeccCCcccccCCcccCCCCCCcEEeCCCCcCC---CCCCcc------------cccCCCCcEEeccCCcccccCchhh
Q 041497           62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS---GKIPTN------------LSRCSNLVKFEASNNKLAGESPAEI  126 (568)
Q Consensus        62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~------------~~~l~~L~~L~l~~n~~~~~~~~~~  126 (568)
                      .+++..+... .....+..+++|++|+++++...   ...|..            ...+++|++|++++|.++...+..+
T Consensus        47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l  125 (594)
T 2p1m_B           47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI  125 (594)
T ss_dssp             EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence            4555543222 12234567788999999887421   111211            2457788888888887765555555


Q ss_pred             c-CcCcCceeecccc-cCCCC-CCcccCCCCCCCeEEeccCCCCCCCCcccc----ccccCcEEeecccc--cccC-CC-
Q 041497          127 G-NLLKFQLLNIAEN-HLRGQ-LPASIGNLSALQEINVNGNRLGGRIPSTRS----HVRNLISFNVGLNQ--FSGM-FP-  195 (568)
Q Consensus       127 ~-~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~--~~~~-~~-  195 (568)
                      . .+++|++|++++| .+... ++..+..+++|++|++++|.+.+..+.++.    .+++|+.|+++++.  +... .. 
T Consensus       126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (594)
T 2p1m_B          126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER  205 (594)
T ss_dssp             HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred             HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence            4 5778888888777 33321 223334677788888877776544433333    45567777777664  1100 00 


Q ss_pred             CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCc-------cccccCccCCCCCCCCeE-ecCCCccccccc
Q 041497          196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN-------LTGSLQDSLSNATNLQKL-DINRNLFSGKVS  267 (568)
Q Consensus       196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L-~L~~n~~~~~~~  267 (568)
                      ....+++|+.|++++|...+.++..+ ..+++|+.|+++.+.       +.+ .+..+..+++|+.+ .+.+.... ..+
T Consensus       206 l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~  282 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLP  282 (594)
T ss_dssp             HHHHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred             HHHhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHH
Confidence            12234666666666552211222222 245556666544332       111 11234455555555 23222211 122


Q ss_pred             CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCCh
Q 041497          268 INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD  347 (568)
Q Consensus       268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~  347 (568)
                      ..+..+++|++|++++|.+...     .+...+..+++|+.|++++| +.+.....+....++++.|++.++.-.+    
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g----  352 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV----  352 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC----
T ss_pred             HHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc----
Confidence            2223445566666665553321     12222345555666665554 2211111111111234455443221000    


Q ss_pred             hhhhhccccccCccccccch-------hhccCCCeeECccCccccccCcccc-Ccccccccccc--c----ccccCCC--
Q 041497          348 GIANLVNLNALGVEFNQLAV-------TILKSLQMLFLHENVLQGTIPSFLG-NLTMLTQRLLE--V----NDLLGNI--  411 (568)
Q Consensus       348 ~~~~~~~L~~l~l~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~~--  411 (568)
                                 ....+.++.       ..+++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++...  
T Consensus       353 -----------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  421 (594)
T 2p1m_B          353 -----------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD  421 (594)
T ss_dssp             -----------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred             -----------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence                       001111111       1155666666665665544333332 35666666666  2    2332111  


Q ss_pred             ---CCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhh-hcCCCCcEEecCCCcccccCCCc
Q 041497          412 ---PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTT  487 (568)
Q Consensus       412 ---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~  487 (568)
                         +..+..+++|+.|++++ .+.+..+..+....+.++.|++++|.+++..+..+ ..+++|++|++++|.+++.....
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~  500 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA  500 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred             hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence               01134566666666654 33332222222212222566666666554333333 44666666666666654322221


Q ss_pred             c-c-ccccceeecccccccccCCccC-cCCCCCCEEeCCCC
Q 041497          488 L-G-CTSLEYLCMQDNSFTGSIPSTL-SSLKSITELDLSRN  525 (568)
Q Consensus       488 ~-~-~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n  525 (568)
                      + . +++|+.|++++|+++......+ ..+|.|+...+..+
T Consensus       501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            1 2 5666666666666543333333 34455555444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.8e-27  Score=252.66  Aligned_cols=453  Identities=14%  Similarity=0.094  Sum_probs=245.2

Q ss_pred             CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccC---C------------cccCCCCC
Q 041497           19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI---P------------HEVGNLFR   83 (568)
Q Consensus        19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~---~------------~~~~~l~~   83 (568)
                      ..|+.|+.+..    ...+.++++..... .....+.++++|++|+++++.....+   |            .....+++
T Consensus        32 ~vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~  106 (594)
T 2p1m_B           32 LVCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW  106 (594)
T ss_dssp             TSCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence            45667877632    23345555543222 12234678889999999887532111   1            11246789


Q ss_pred             CcEEeCCCCcCCCCCCcccc-cCCCCcEEeccCC-ccccc-CchhhcCcCcCceeecccccCCCCCCccc----CCCCCC
Q 041497           84 LQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNN-KLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASI----GNLSAL  156 (568)
Q Consensus        84 L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~----~~l~~L  156 (568)
                      |++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+.+..+..+    ..+++|
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L  186 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL  186 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence            99999999888755555564 6899999999988 44322 34445578999999999988765443333    367799


Q ss_pred             CeEEeccCCCCCCCCcc----ccccccCcEEeecccc-cccCCC-CCCCCCCccEEEeeccc-------ccccCCCcccC
Q 041497          157 QEINVNGNRLGGRIPST----RSHVRNLISFNVGLNQ-FSGMFP-PINNISSLEYIFIHRNI-------YHGSLPLDIGV  223 (568)
Q Consensus       157 ~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~-~~~~~~-~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~  223 (568)
                      ++|++++|. .......    +..+++|+.|++++|. +.+ .+ .+..+++|+.|++..+.       +. .++..+ .
T Consensus       187 ~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~  262 (594)
T 2p1m_B          187 VSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-S  262 (594)
T ss_dssp             CEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-H
T ss_pred             cEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-h
Confidence            999999886 1111122    2456899999999883 333 33 56677889999865442       22 122222 3


Q ss_pred             CCCCcceE-eecCCccccccCccCCCCCCCCeEecCCCcccccccC-CccCCCCCcEEECCCCCCCCcCCCCchhhhccc
Q 041497          224 NLPNLRFF-IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT  301 (568)
Q Consensus       224 ~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  301 (568)
                      ++++|+.+ .+.+.... ..+..+..+++|++|++++|.+.+.... .+..+++|++|++.+| +..     ..+.....
T Consensus       263 ~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~l~~l~~  335 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AGLEVLAS  335 (594)
T ss_dssp             TCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HHHHHHHH
T ss_pred             cCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HHHHHHHH
Confidence            67778877 34332221 2333334578888899888886543222 2457788888888876 321     12222344


Q ss_pred             CCCcccEEEecc---------CcccCcCchhhhcccccceEEEcccCcccCCCChhhh-hhccccccCcc--c----ccc
Q 041497          302 NCTKLEVLVLDS---------NRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIA-NLVNLNALGVE--F----NQL  365 (568)
Q Consensus       302 ~~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~--~----~~~  365 (568)
                      .+++|++|++..         +.+++.....+....++++.|.+..+.+++..+..+. .+++|+.|+++  +    +.+
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence            578888888844         2333322222322223477777666666654444443 34555555554  1    222


Q ss_pred             chhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccC-CCCceEEEcccCCCCCCCCCch-hHHh
Q 041497          366 AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN-CKNLILLTTRKNKPSGTMPRQL-PRII  443 (568)
Q Consensus       366 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~  443 (568)
                      +...             ........+..+++|+.|++++ .+++.....+.. +++|++|++++|.+.+.....+ ..+.
T Consensus       416 ~~~~-------------~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          416 TLEP-------------LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             TCCC-------------THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             cCCc-------------hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence            2000             0000001123334444444433 222222222222 4445555555444432222222 1122


Q ss_pred             hhceEEEccCCcccccCch-hhhcCCCCcEEecCCCcccccCCCccc--ccccceeeccccc
Q 041497          444 TLSVLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFSGEIPTTLG--CTSLEYLCMQDNS  502 (568)
Q Consensus       444 ~l~~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~~L~~L~Ls~n~  502 (568)
                      .+ +.|++++|.+++.... ....+++|++|++++|+++......+.  ++.|+...+..+.
T Consensus       482 ~L-~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          482 SL-RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             TC-CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             Cc-CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            22 5555555555432222 233467777777777776433333231  5566555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.2e-25  Score=215.28  Aligned_cols=264  Identities=19%  Similarity=0.166  Sum_probs=177.9

Q ss_pred             CCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497          252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM  331 (568)
Q Consensus       252 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (568)
                      ++..+++.+.+.......+..+++|++|++++|.+....+.      .+..+++|+.|++++|.+.+..+          
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~----------   75 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DLAPFTKLELLNLSSNVLYETLD----------   75 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH------HHTTCTTCCEEECTTSCCEEEEE----------
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH------HhhCCCcCCEEECCCCcCCcchh----------
Confidence            33444444444433333344455566666666655543321      24455555555555555544332          


Q ss_pred             eEEEcccCcccCCCChhhhhhccccccCccccccchhh-ccCCCeeECccCccccccCccccCcccccccccccccccCC
Q 041497          332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN  410 (568)
Q Consensus       332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  410 (568)
                                       +..+++|+.|++++|.+.... .++|++|++++|.+++..+.   .+++|+.|++++|++++.
T Consensus        76 -----------------~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~  135 (317)
T 3o53_A           76 -----------------LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML  135 (317)
T ss_dssp             -----------------ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSG
T ss_pred             -----------------hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCc
Confidence                             344444444444444443222 46788888888887765433   356788888888888877


Q ss_pred             CCCCccCCCCceEEEcccCCCCCCCCCchh-HHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc
Q 041497          411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG  489 (568)
Q Consensus       411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  489 (568)
                      .+..+..+++|++|++++|.+.+..+..+. .+..+ +.|++++|.+++. + ....+++|++|++++|++++ +|..+.
T Consensus       136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~  211 (317)
T 3o53_A          136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQ  211 (317)
T ss_dssp             GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred             cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhc
Confidence            777788888888888888888776666554 34455 8888888888754 2 33458899999999999985 444455


Q ss_pred             -ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc-cCcCccccccccCCeeecccC-cccccCC
Q 041497          490 -CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS-GHIPQYLENLSFLSFLNLSYN-HFESKSL  556 (568)
Q Consensus       490 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~i~~~~~  556 (568)
                       +++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+..++.|+.++++++ .+.+..|
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence             899999999999998 56777888999999999999998 677888889999999998833 3444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.6e-23  Score=196.92  Aligned_cols=167  Identities=18%  Similarity=0.223  Sum_probs=108.8

Q ss_pred             CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCC
Q 041497           19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI   98 (568)
Q Consensus        19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   98 (568)
                      .++|.|.++.|.- ....+.++++++.+...+. .+.  +++++|++++|.+....+.+|.++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            3689999988842 1345678888887776432 222  56788888888777655567777888888888888777555


Q ss_pred             CcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccc
Q 041497           99 PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR  178 (568)
Q Consensus        99 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  178 (568)
                      +..|..+++|++|++++|++....+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+....+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            55567777777777777777755555566677777777777777655555566666666666666665533333344444


Q ss_pred             cCcEEeecccc
Q 041497          179 NLISFNVGLNQ  189 (568)
Q Consensus       179 ~L~~L~l~~~~  189 (568)
                      +|+.|++++|.
T Consensus       158 ~L~~L~L~~n~  168 (270)
T 2o6q_A          158 SLKELRLYNNQ  168 (270)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccceeEecCCc
Confidence            44444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1e-25  Score=218.34  Aligned_cols=247  Identities=16%  Similarity=0.163  Sum_probs=171.8

Q ss_pred             CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccc-ccCchhhc-------CcCcCceeecccccCCCCCCccc-
Q 041497           80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA-GESPAEIG-------NLLKFQLLNIAENHLRGQLPASI-  150 (568)
Q Consensus        80 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~-  150 (568)
                      ..++|++|++++|.+  .+|..+...  |++|++++|.+. ..++..+.       ++++|++|++++|.+.+..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344455555555555  344433332  555566665552 23444443       56677777777777766666655 


Q ss_pred             -CCCCCCCeEEeccCCCCCCCCcccccc-----ccCcEEeecccccccCCC-CCCCCCCccEEEeeccccccc--CC-Cc
Q 041497          151 -GNLSALQEINVNGNRLGGRIPSTRSHV-----RNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGS--LP-LD  220 (568)
Q Consensus       151 -~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~--~~-~~  220 (568)
                       ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.  .+ ..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             6677777777777777644 6666665     677777777777776664 677777788888877775543  22 22


Q ss_pred             ccCCCCCcceEeecCCccccc---cCccCCCCCCCCeEecCCCccccccc-CCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497          221 IGVNLPNLRFFIISGNNLTGS---LQDSLSNATNLQKLDINRNLFSGKVS-INFGGLQNLSWLNLGKNNLGTRTANDLDF  296 (568)
Q Consensus       221 ~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (568)
                      .+..+++|++|++++|.+++.   ....+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+..++..    
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~----  271 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG----  271 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS----
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh----
Confidence            235889999999999998832   22344577999999999999987664 4466789999999999999866542    


Q ss_pred             hhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccC
Q 041497          297 ITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG  343 (568)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~  343 (568)
                         +.  ++|+.|++++|++++. +. +...+ +++.|++++|.+++
T Consensus       272 ---~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          272 ---LP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLD  310 (312)
T ss_dssp             ---CC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTC
T ss_pred             ---cc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCC
Confidence               22  8999999999999987 33 55554 49999999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-23  Score=199.63  Aligned_cols=213  Identities=20%  Similarity=0.192  Sum_probs=181.4

Q ss_pred             ceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCC
Q 041497          331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN  410 (568)
Q Consensus       331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  410 (568)
                      .+.++++++.++.. |..+                    .+++++|++++|.++...+..|..+++|+.|++++|.++..
T Consensus        18 ~~~l~~~~~~l~~i-p~~~--------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i   76 (270)
T 2o6q_A           18 KNSVDCSSKKLTAI-PSNI--------------------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL   76 (270)
T ss_dssp             TTEEECTTSCCSSC-CSCC--------------------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred             CCEEEccCCCCCcc-CCCC--------------------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence            56677777776642 3222                    34688999999999877767899999999999999999877


Q ss_pred             CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-
Q 041497          411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-  489 (568)
Q Consensus       411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-  489 (568)
                      .+..+.++++|++|++++|.+.+..+..+..+..+ +.|++++|.+++..+..|..+++|++|++++|.+++..+..+. 
T Consensus        77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence            77778889999999999999987776677777777 9999999999988888899999999999999999866666566 


Q ss_pred             ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497          490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI  565 (568)
Q Consensus       490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  565 (568)
                      +++|+.|++++|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.|.|+....+..|+
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l  231 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL  231 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence            9999999999999998877889999999999999999998888889999999999999999999998654444454

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=6.8e-25  Score=225.23  Aligned_cols=244  Identities=17%  Similarity=0.161  Sum_probs=178.0

Q ss_pred             cccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-ccCCCeeECccCcc
Q 041497          305 KLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVL  383 (568)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~L~~L~l~~~~~  383 (568)
                      +|+.|++++|.+.+..+..+..++. ++.|++++|.+++..|  +..+++|+.|++++|.+.... .++|+.|++++|.+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            4455555555444444444443332 5555555555444333  455555555555555554322 46788888888888


Q ss_pred             ccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchh-HHhhhceEEEccCCcccccCch
Q 041497          384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLSGHFPA  462 (568)
Q Consensus       384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~l~Ls~n~l~~~~~~  462 (568)
                      ++..+.   .+++|+.|++++|.+++..+..+.++++|+.|++++|.+.+..+..+. .+..+ +.|+|++|.+++..  
T Consensus       112 ~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~--  185 (487)
T 3oja_A          112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDVK--  185 (487)
T ss_dssp             CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEEE--
T ss_pred             CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCcccccc--
Confidence            765443   357888999999999888888888889999999999988887777776 45555 89999999988652  


Q ss_pred             hhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc-cCcCcccccccc
Q 041497          463 EVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS-GHIPQYLENLSF  540 (568)
Q Consensus       463 ~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~  540 (568)
                      ....+++|+.|++++|.+++..+. +. +++|+.|+|++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence            344689999999999999865454 55 999999999999998 46777889999999999999987 567788888899


Q ss_pred             CCeeecc-------cCcccccCCCCc
Q 041497          541 LSFLNLS-------YNHFESKSLFVW  559 (568)
Q Consensus       541 L~~L~l~-------~n~i~~~~~~~~  559 (568)
                      |+.++++       .++..|.+|...
T Consensus       264 L~~l~~~~~~~~~~~~~~~c~~~~~~  289 (487)
T 3oja_A          264 VQTVAKQTVKKLTGQNEEECTVPTLG  289 (487)
T ss_dssp             HHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred             CcEEeccccccccCCCcccccCCccc
Confidence            9999887       888888887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.1e-23  Score=200.48  Aligned_cols=214  Identities=19%  Similarity=0.168  Sum_probs=149.2

Q ss_pred             ceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCC
Q 041497          331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN  410 (568)
Q Consensus       331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  410 (568)
                      ++.|++++|.+++..+..+..+                  ++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSF------------------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTC------------------TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             ccEEECCCCcccccCHhHhccc------------------cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            5555555555554444444443                  3455555555555544444566666666666666666655


Q ss_pred             CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCccccc-CchhhhcCCCCcEEecCCCcccccCCCccc
Q 041497          411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH-FPAEVGKLKNLVSLDISSNMFSGEIPTTLG  489 (568)
Q Consensus       411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  489 (568)
                      .+..+.++++|++|++++|.+.+..+..+..+..+ +.|++++|.+++. .|..+..+++|++|++++|++++..+..+.
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            55566666666666666666665555455555555 7777777777653 477888999999999999999866666665


Q ss_pred             -ccccc----eeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497          490 -CTSLE----YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE  564 (568)
Q Consensus       490 -~~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~  564 (568)
                       +.+|+    .|++++|.+++..+..+.. .+|+.|++++|.+++..+..|..+++|+.|++++|++.|.||.......|
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~  249 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  249 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence             67776    8899999998666655544 58999999999999887778899999999999999999999865433333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.6e-25  Score=214.90  Aligned_cols=241  Identities=16%  Similarity=0.156  Sum_probs=147.2

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      ..+...+++.+.+.......+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++..+  +..+++|++|++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            445666777777766655556677788888888888876666778888888888888888764333  777888888888


Q ss_pred             cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      ++|++++. +    ..++|++|++++|.+.+..+   ..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus        88 s~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQEL-L----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEE-E----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCccccc-c----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            88877632 2    33777777777777764322   2356677777777776654455555666666666666655433


Q ss_pred             CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497          194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL  273 (568)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~  273 (568)
                      .                       +..+...+++|++|++++|.+++...  ...+++|++|++++|.+.+..+. +..+
T Consensus       160 ~-----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l  213 (317)
T 3o53_A          160 N-----------------------FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSA  213 (317)
T ss_dssp             E-----------------------GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGG
T ss_pred             c-----------------------HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hccc
Confidence            2                       22222234555555555555554311  22355566666666665544332 5555


Q ss_pred             CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCccc
Q 041497          274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG  317 (568)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (568)
                      ++|+.|++++|.+..++.       .+..+++|+.|++++|++.
T Consensus       214 ~~L~~L~L~~N~l~~l~~-------~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          214 AGVTWISLRNNKLVLIEK-------ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCSEEECTTSCCCEECT-------TCCCCTTCCEEECTTCCCB
T ss_pred             CcccEEECcCCcccchhh-------HhhcCCCCCEEEccCCCcc
Confidence            566666666655554332       1344555555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=7.7e-23  Score=214.10  Aligned_cols=268  Identities=22%  Similarity=0.236  Sum_probs=149.2

Q ss_pred             CccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEEC
Q 041497          202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNL  281 (568)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l  281 (568)
                      .++.|+++++.++ .+|..+.   ++|+.|++++|.++.. +.   .+++|+.|++++|.++++..    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            3555666555554 4444332   4556666666555532 22   34555566666655553322    3455555555


Q ss_pred             CCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcc
Q 041497          282 GKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVE  361 (568)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~  361 (568)
                      ++|.+...+.          .+++|+.|++++|+++.+...     ..+++.|++++|.+++. |               
T Consensus       109 s~N~l~~l~~----------~l~~L~~L~L~~N~l~~lp~~-----l~~L~~L~Ls~N~l~~l-~---------------  157 (622)
T 3g06_A          109 FSNPLTHLPA----------LPSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASL-P---------------  157 (622)
T ss_dssp             CSCCCCCCCC----------CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSCC-C---------------
T ss_pred             cCCcCCCCCC----------CCCCcCEEECCCCCCCcCCCC-----CCCCCEEECcCCcCCCc-C---------------
Confidence            5555544322          234455555555555443221     12344555555444431 1               


Q ss_pred             ccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhH
Q 041497          362 FNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR  441 (568)
Q Consensus       362 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  441 (568)
                            ..+++|+.|++++|.++. ++   ..+++|+.|++++|.+++. +.   ..++|+.|++++|.+.. ++..+  
T Consensus       158 ------~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~~~--  220 (622)
T 3g06_A          158 ------ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPALP--  220 (622)
T ss_dssp             ------CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCCCC--
T ss_pred             ------CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCCCC--
Confidence                  114556777777777664 22   3456777777777777642 22   23567777777776653 22222  


Q ss_pred             HhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEe
Q 041497          442 IITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELD  521 (568)
Q Consensus       442 ~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  521 (568)
                       ..+ +.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.  .+++|+.|+|++|.++ .+|..+.++++|+.|+
T Consensus       221 -~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 -SGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             -TTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             -CCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence             223 667777777764 33   34567777777777776 4444  4567777777777777 5566677777777777


Q ss_pred             CCCCccccCcCccccccc
Q 041497          522 LSRNNLSGHIPQYLENLS  539 (568)
Q Consensus       522 l~~n~l~~~~~~~~~~l~  539 (568)
                      +++|++++..|..+..++
T Consensus       291 L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          291 LEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCSCCCCHHHHHHHHHHH
T ss_pred             ecCCCCCCcCHHHHHhcc
Confidence            777777766666555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.1e-22  Score=191.49  Aligned_cols=206  Identities=18%  Similarity=0.186  Sum_probs=147.5

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++....+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35777777777776555556777777777777777777555666777777777777777777666666777777777777


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC-CCCCCCCcc----EEEeecc
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE----YIFIHRN  211 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~----~L~l~~~  211 (568)
                      ++|.+.+..+..++.+++|++|++++|.+.. .+|..+..+++|+.|++++|.+.+..+ .+..++.|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            7777776555567777777777777777764 246777777777777777777766544 444444444    7777777


Q ss_pred             cccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccccc
Q 041497          212 IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK  265 (568)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~  265 (568)
                      .+. .++...+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            776 3444444 345799999999998877777778889999999999988754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.8e-22  Score=192.65  Aligned_cols=183  Identities=25%  Similarity=0.216  Sum_probs=158.3

Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL  449 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l  449 (568)
                      .++++.|++++|.+++..+..+..+++|+.|++++|.+++..+.  ..+++|++|++++|.+. .+|..+..+..+ +.|
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L-~~L  105 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL-TVL  105 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTC-CEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCC-CEE
Confidence            35688999999999877778899999999999999998765443  67899999999999887 566667777777 999


Q ss_pred             EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497          450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS  528 (568)
Q Consensus       450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (568)
                      ++++|++++..+..|..+++|++|++++|+++...+..+. +++|+.|+|++|+++...+..|..+++|+.|++++|.++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            9999999977778899999999999999999966666666 999999999999999777777889999999999999999


Q ss_pred             cCcCccccccccCCeeecccCcccccCCC
Q 041497          529 GHIPQYLENLSFLSFLNLSYNHFESKSLF  557 (568)
Q Consensus       529 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  557 (568)
                       .+|..+...++|+.+++++|++.|.|..
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             -ccChhhcccccCCeEEeCCCCccCcCcc
Confidence             5677777888999999999999999854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=3.2e-22  Score=205.35  Aligned_cols=218  Identities=15%  Similarity=0.143  Sum_probs=122.8

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      ...+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|+
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~  102 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence            3445577777777777776666677777777777777777764333  677777777777777776322     236777


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCC-CCCCccEEEeecc
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PIN-NISSLEYIFIHRN  211 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~-~~~~L~~L~l~~~  211 (568)
                      +|++++|.+.+..+   ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ .+. .+++|+.|++++|
T Consensus       103 ~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            77777777764332   235667777777777765555566666666666666666654433 222 3444444444444


Q ss_pred             cccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCC
Q 041497          212 IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL  286 (568)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (568)
                      .+.+. +...  .+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ .|..+..+++|+.|++++|.+
T Consensus       180 ~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          180 FIYDV-KGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCCEE-ECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred             ccccc-cccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence            44322 1111  24444444444444443222 24444444444444444443 222344444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1e-21  Score=186.14  Aligned_cols=182  Identities=19%  Similarity=0.202  Sum_probs=89.2

Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL  449 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l  449 (568)
                      +++|+.+++++|.++..  ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+..+ +.|
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL-KEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC-CEE
Confidence            44445555554444321  2344445555555555544431  234445555555555555544444334444444 555


Q ss_pred             EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497          450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS  528 (568)
Q Consensus       450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (568)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            5555555544444455555555555555555533333333 555555555555555444444455555555555555555


Q ss_pred             cCcCccccccccCCeeecccCcccccCC
Q 041497          529 GHIPQYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       529 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      +..+..+..+++|+.|++++|++.|.||
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            5444445555555555555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.3e-21  Score=183.04  Aligned_cols=190  Identities=17%  Similarity=0.141  Sum_probs=147.2

Q ss_pred             cCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEE
Q 041497          371 KSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN  450 (568)
Q Consensus       371 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~  450 (568)
                      ++.++++++++.++ .++..+.  +.++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+..+ +.|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEE
Confidence            34567777777776 3444443  577788888888877777777778888888888888777766666666666 8888


Q ss_pred             ccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          451 LSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       451 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      +++|.+++..+..|..+++|++|++++|++++..+..+. +++|+.|+|++|++++..+..|..+++|++|++++|.+++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            888888877777788889999999999998866565666 8999999999999987777788888999999999999988


Q ss_pred             CcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497          530 HIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE  564 (568)
Q Consensus       530 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~  564 (568)
                      ..+..|..+++|+.|++++|++.|.+.....+..|
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~  204 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW  204 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence            87778888899999999999998885444333333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.6e-21  Score=183.33  Aligned_cols=209  Identities=19%  Similarity=0.261  Sum_probs=136.2

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      +..+++|++|+++++.+.. + ..+..+++|++|++++|.+++ . ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4566667777777666552 2 245666777777777776663 2 3566667777777777766655555566677777


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI  212 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  212 (568)
                      +|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            77777777665555556667777777777776665445556667777777777776665555 45667777777777777


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCC
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ  274 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~  274 (568)
                      +.+ ++...+..+++|+.|++++|.+.       ..+++|+.++++.|.+.+..|..++.++
T Consensus       193 l~~-~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          193 LKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCc-cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            664 33344446777888888777654       2356677788888877777776665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.6e-20  Score=179.28  Aligned_cols=203  Identities=21%  Similarity=0.217  Sum_probs=101.7

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      +++++++++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++.. +. ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence            344555555555555554 3343332  4555555555555544444555555555555555555432 11 13455555


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY  213 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (568)
                      +|++++|.+. .+|..+..+++|++|++++|++....+..+..+++|+.|++++|.+..                     
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------------  138 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------  138 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence            5555555554 344445555555555555555543333444445555555555444443                     


Q ss_pred             cccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCC
Q 041497          214 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLG  287 (568)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (568)
                         ++...+..+++|+.|++++|+++...+..+..+++|+.|++++|.++.+ |..+...++|+.+++++|++.
T Consensus       139 ---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          139 ---LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ---CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             ---cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence               2333333445555555555555544444455555566666666655532 333344455666666665553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=9.9e-21  Score=177.06  Aligned_cols=189  Identities=19%  Similarity=0.243  Sum_probs=150.9

Q ss_pred             CCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCC
Q 041497           20 NLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIP   99 (568)
Q Consensus        20 ~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   99 (568)
                      .|+.|.|..|.   ...++++++++.+...+.. +.  +++++|++++|.+.+..+..+.++++|++|++++|.+++..+
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            57889999995   3456788998888865432 33  589999999999988788889999999999999999987778


Q ss_pred             cccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccccccc
Q 041497          100 TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN  179 (568)
Q Consensus       100 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  179 (568)
                      ..|..+++|++|++++|+++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            78899999999999999998776777888999999999999988766666788899999999999888655557788888


Q ss_pred             CcEEeecccccccCCC-CCCCCCCccEEEeeccccc
Q 041497          180 LISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYH  214 (568)
Q Consensus       180 L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~  214 (568)
                      |+.|++++|.+.+..+ .+..+++|+.|++++|.+.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            8888888888776554 4555566666666655543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=2.2e-23  Score=204.54  Aligned_cols=270  Identities=17%  Similarity=0.200  Sum_probs=179.2

Q ss_pred             CCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCC--CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 041497           18 SINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNL--SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS   95 (568)
Q Consensus        18 ~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~   95 (568)
                      +..|..|+.+.|..  ..++++|++++.+..   ..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.++
T Consensus        33 ~~vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~  106 (336)
T 2ast_B           33 SGVCKRWYRLASDE--SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE  106 (336)
T ss_dssp             TSSCHHHHHHHTCS--TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred             HHHHHHHHHHhcCc--hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence            45677798887753  457789999887763   345666  7899999999988765554 557888999999988876


Q ss_pred             CC-CCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccc-cCCC-CCCcccCCCCCCCeEEeccC-CCCCC-C
Q 041497           96 GK-IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN-HLRG-QLPASIGNLSALQEINVNGN-RLGGR-I  170 (568)
Q Consensus        96 ~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~  170 (568)
                      +. ++..+..+++|++|++++|.+....+..+..+++|++|++++| .+.+ .++..+..+++|++|++++| .+... .
T Consensus       107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  186 (336)
T 2ast_B          107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV  186 (336)
T ss_dssp             HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred             HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence            44 6666788888888888888887667777888888888888888 4543 14445667788888888877 66532 3


Q ss_pred             Cccccccc-cCcEEeecccccccCCCCCCCCCCccEEEeeccccc-ccCCCcccCCCCCcceEeecCCc-cccccCccCC
Q 041497          171 PSTRSHVR-NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYH-GSLPLDIGVNLPNLRFFIISGNN-LTGSLQDSLS  247 (568)
Q Consensus       171 ~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~  247 (568)
                      +..+..++ +|++|++++|..                     .++ +.++.. +..+++|++|++++|. +++..+..+.
T Consensus       187 ~~~~~~l~~~L~~L~l~~~~~---------------------~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          187 QVAVAHVSETITQLNLSGYRK---------------------NLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             HHHHHHSCTTCCEEECCSCGG---------------------GSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             HHHHHhcccCCCEEEeCCCcc---------------------cCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            44556666 777777766632                     111 122222 2256677777777776 5555555667


Q ss_pred             CCCCCCeEecCCCc-ccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCC-CcccEEEeccCcccCcCchhhh
Q 041497          248 NATNLQKLDINRNL-FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC-TKLEVLVLDSNRFGAVLPFSLA  325 (568)
Q Consensus       248 ~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~  325 (568)
                      .+++|+.|++++|. +.......++.+++|+.|++++| +..   ..      +..+ ..++.|++++|.+++..+..+.
T Consensus       245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~------~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GT------LQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TC------HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HH------HHHHHhhCcceEEecccCccccCCccc
Confidence            77777888887774 33222234666778888888777 222   11      1111 2355556788888776665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=9.4e-21  Score=175.94  Aligned_cols=196  Identities=16%  Similarity=0.186  Sum_probs=124.1

Q ss_pred             CCceeeccCCcccccCCcccCCCCCCcEEeCCCCc-CCCCCCcccccCCCCcEEeccC-CcccccCchhhcCcCcCceee
Q 041497           59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY-FSGKIPTNLSRCSNLVKFEASN-NKLAGESPAEIGNLLKFQLLN  136 (568)
Q Consensus        59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~  136 (568)
                      ++++|++++|.++...+..|.++++|++|++++|. ++...+..|.++++|++|++++ |+++...+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            68888888888876666677788888888888886 7655566777788888888887 777766566677777777777


Q ss_pred             cccccCCCCCCcccCCCCCCC---eEEeccC-CCCCCCCccccccccCc-EEeecccccccCCCCCCCCCCccEEEeecc
Q 041497          137 IAENHLRGQLPASIGNLSALQ---EINVNGN-RLGGRIPSTRSHVRNLI-SFNVGLNQFSGMFPPINNISSLEYIFIHRN  211 (568)
Q Consensus       137 l~~~~l~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  211 (568)
                      +++|.+.+ +|. +..+++|+   +|++++| .+....+..+..+++|+ .|++++|.+.                    
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--------------------  169 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--------------------  169 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--------------------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--------------------
Confidence            77777764 444 66666666   6666666 55433333344444444 4444444333                    


Q ss_pred             cccccCCCcccCCCCCcceEeecCCc-cccccCccCCCC-CCCCeEecCCCcccccccCCccCCCCCcEEECCCC
Q 041497          212 IYHGSLPLDIGVNLPNLRFFIISGNN-LTGSLQDSLSNA-TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN  284 (568)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~  284 (568)
                          .++...+.. ++|+.|++++|+ ++...+..|..+ ++|+.|++++|.+++..+.   .+++|+.|++.++
T Consensus       170 ----~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          170 ----SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             ----EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             ----ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence                334443323 566666666663 665555556666 6666666666666544332   4455566655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=2.8e-22  Score=198.42  Aligned_cols=265  Identities=16%  Similarity=0.189  Sum_probs=164.1

Q ss_pred             EeccCCccccccCCcccCCCCCceeeccCCcccccCC----cccCCCC-CCcEEeCCCCcCCCCCCcccccC-----CCC
Q 041497           39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIP----HEVGNLF-RLQNLTLTNNYFSGKIPTNLSRC-----SNL  108 (568)
Q Consensus        39 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L  108 (568)
                      .+++.+.+.+..+..+...++|++|++++|.+.+..+    .++..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5677888888777766677778999999888876655    6677888 88888888888886667666664     888


Q ss_pred             cEEeccCCcccccCchhhc----Cc-CcCceeecccccCCCCCCccc----CC-CCCCCeEEeccCCCCCCCCcc----c
Q 041497          109 VKFEASNNKLAGESPAEIG----NL-LKFQLLNIAENHLRGQLPASI----GN-LSALQEINVNGNRLGGRIPST----R  174 (568)
Q Consensus       109 ~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~~~l~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~----l  174 (568)
                      ++|++++|+++...+..+.    .+ ++|++|++++|.+.+..+..+    .. .++|++|++++|.+....+..    +
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            8888888888766655443    33 788888888888775444333    33 257888888888776433322    2


Q ss_pred             cccc-cCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCC-CCcceEeecCCccccc----cCccCC
Q 041497          175 SHVR-NLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNL-PNLRFFIISGNNLTGS----LQDSLS  247 (568)
Q Consensus       175 ~~l~-~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~  247 (568)
                      ...+ +|++|++++|.+.+..+ .+..                    .+ ... ++|++|++++|.+.+.    .+..+.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l-~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAK--------------------FL-ASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHH--------------------HH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHH--------------------HH-HhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            3333 67777777666654332 1110                    00 122 3556666666655542    122222


Q ss_pred             C-CCCCCeEecCCCccccccc----CCccCCCCCcEEECCCCCCCCcCCCC-chhhhcccCCCcccEEEeccCcccCcCc
Q 041497          248 N-ATNLQKLDINRNLFSGKVS----INFGGLQNLSWLNLGKNNLGTRTAND-LDFITLLTNCTKLEVLVLDSNRFGAVLP  321 (568)
Q Consensus       248 ~-~~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (568)
                      . .++|++|++++|.+.+..+    ..+..+++|++|++++|.+....... ..+...+..+++|+.+++++|++....+
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            2 3466666666666654333    22345566666666666644333221 1223345667778888888887766544


Q ss_pred             hhh
Q 041497          322 FSL  324 (568)
Q Consensus       322 ~~~  324 (568)
                      ..+
T Consensus       302 ~~~  304 (362)
T 3goz_A          302 IPI  304 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=5.9e-20  Score=170.52  Aligned_cols=197  Identities=14%  Similarity=0.132  Sum_probs=153.7

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCc-ccccCCcccCCCCCCcEEeCCC-CcCCCCCCcccccCCCCcEE
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNS-FRAEIPHEVGNLFRLQNLTLTN-NYFSGKIPTNLSRCSNLVKF  111 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  111 (568)
                      ..++.|++++|.+.+..+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.++...+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478999999999999888889999999999999997 8766667899999999999998 99997777889999999999


Q ss_pred             eccCCcccccCchhhcCcCcCc---eeecccc-cCCCCCCcccCCCCCCC-eEEeccCCCCCCCCccccccccCcEEeec
Q 041497          112 EASNNKLAGESPAEIGNLLKFQ---LLNIAEN-HLRGQLPASIGNLSALQ-EINVNGNRLGGRIPSTRSHVRNLISFNVG  186 (568)
Q Consensus       112 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  186 (568)
                      ++++|++++ +|. +..+++|+   +|++++| .+.+..+..|..+++|+ +|++++|.+. .+|......++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            999999985 565 88888888   9999999 88866667799999999 9999999987 555443333677888887


Q ss_pred             ccc-cccCCCCCCCCCCccEEEeecccccccCCCcccCCC-CCcceEeecCCccccccCccCCCCCCCCeEecCCC
Q 041497          187 LNQ-FSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNL-PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN  260 (568)
Q Consensus       187 ~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n  260 (568)
                      +|+ +...                        +...+..+ ++|+.|++++|.++...+.   .+++|+.|++.++
T Consensus       188 ~n~~l~~i------------------------~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVI------------------------DKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEE------------------------CTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccC------------------------CHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            774 5533                        22333344 5566666666655533222   3455666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=9.6e-21  Score=183.13  Aligned_cols=205  Identities=17%  Similarity=0.189  Sum_probs=110.1

Q ss_pred             CCCcEEeCCCCcCCCCCCccc--ccCCCCcEEeccCCcccccCc----hhhcCcCcCceeecccccCCCCCCcccCCCCC
Q 041497           82 FRLQNLTLTNNYFSGKIPTNL--SRCSNLVKFEASNNKLAGESP----AEIGNLLKFQLLNIAENHLRGQLPASIGNLSA  155 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  155 (568)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|++.+..+    ..+..+++|++|++++|.+.+..+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555554444444  445555555555555443222    22233445555555555544444444444444


Q ss_pred             CCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC--CCCCCCCccEEEeecccccc--cCCCcccCCCCCcceE
Q 041497          156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRNIYHG--SLPLDIGVNLPNLRFF  231 (568)
Q Consensus       156 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L  231 (568)
                      |++|++++|++.+..                     +...  .+..+++|+.|++++|.++.  ..+..++..+++|++|
T Consensus       171 L~~L~Ls~N~l~~~~---------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          171 LTSLDLSDNPGLGER---------------------GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             CCEEECCSCTTCHHH---------------------HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred             CCEEECCCCCCccch---------------------hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence            555554444432100                     0111  22345555555555555431  1111122356777777


Q ss_pred             eecCCccccccCccCCCC---CCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccE
Q 041497          232 IISGNNLTGSLQDSLSNA---TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEV  308 (568)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  308 (568)
                      ++++|.+.+..|..+..+   ++|++|++++|.++.+ |..+.  ++|++|++++|.+...+.        +..+++|+.
T Consensus       230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~~~--------~~~l~~L~~  298 (310)
T 4glp_A          230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRAPQ--------PDELPEVDN  298 (310)
T ss_dssp             ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSCCC--------TTSCCCCSC
T ss_pred             ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCCch--------hhhCCCccE
Confidence            777777776655555554   5788888888877743 43332  678888888887776432        346677888


Q ss_pred             EEeccCcccC
Q 041497          309 LVLDSNRFGA  318 (568)
Q Consensus       309 L~l~~~~~~~  318 (568)
                      |++++|++++
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            8888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=8.5e-21  Score=183.51  Aligned_cols=226  Identities=15%  Similarity=0.126  Sum_probs=153.5

Q ss_pred             CeEEEEeccCCccccccCC---cccCCCCCceeeccCCcccccCCccc--CCCCCCcEEeCCCCcCCCCCC----ccccc
Q 041497           34 QRVIGLDLRHQSIGGFLSP---FVGNLSFLRSINLANNSFRAEIPHEV--GNLFRLQNLTLTNNYFSGKIP----TNLSR  104 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~---~~~~~~~L~~L~ls~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~  104 (568)
                      ..++.+++.+..+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3466677777666532211   12345779999999999998888888  899999999999999986554    33457


Q ss_pred             CCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCC--C--CcccCCCCCCCeEEeccCCCCCCCCc----cccc
Q 041497          105 CSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQ--L--PASIGNLSALQEINVNGNRLGGRIPS----TRSH  176 (568)
Q Consensus       105 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~  176 (568)
                      +++|++|++++|++....+..+..+++|++|++++|.+.+.  .  +..++.+++|++|++++|.+. ..+.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            99999999999999887788999999999999999987531  1  233478899999999999986 2333    2466


Q ss_pred             cccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeE
Q 041497          177 VRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKL  255 (568)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  255 (568)
                      +++|++|++++|.+.+..+ .+..+.                      .+++|++|++++|+++ ..|..+.  ++|+.|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L  277 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCM----------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVL  277 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCC----------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred             CCCCCEEECCCCCCCccchhhHHhcc----------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence            7888888888888876533 333321                      1234555555555544 2233221  455555


Q ss_pred             ecCCCcccccccCCccCCCCCcEEECCCCCCC
Q 041497          256 DINRNLFSGKVSINFGGLQNLSWLNLGKNNLG  287 (568)
Q Consensus       256 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (568)
                      ++++|++++...  +..+++|+.|++++|++.
T Consensus       278 ~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          278 DLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             ECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred             ECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence            555555553311  344555555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=3.5e-22  Score=197.69  Aligned_cols=267  Identities=16%  Similarity=0.153  Sum_probs=181.3

Q ss_pred             eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCC----cccccCC-CCcEEeccCCcccccCchhhcCc-----Cc
Q 041497           62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIP----TNLSRCS-NLVKFEASNNKLAGESPAEIGNL-----LK  131 (568)
Q Consensus        62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~  131 (568)
                      ++.++.|.+++.+|..+...++|++|++++|.+++..+    +.+..++ +|++|++++|++....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677888887777777766778999998888886555    6677777 88888888888887666666664     78


Q ss_pred             CceeecccccCCCCCCcc----cCCC-CCCCeEEeccCCCCCCCCccccc-----cccCcEEeecccccccCCCCCCCCC
Q 041497          132 FQLLNIAENHLRGQLPAS----IGNL-SALQEINVNGNRLGGRIPSTRSH-----VRNLISFNVGLNQFSGMFPPINNIS  201 (568)
Q Consensus       132 L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~l~~~~  201 (568)
                      |++|++++|.+.+..+..    +..+ ++|++|++++|.+....+..+..     .++|++|++++|.+.+...      
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------  155 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------  155 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence            888888888877544443    3333 67777777777776444333322     2456666666665543211      


Q ss_pred             CccEEEeecccccccCCCcccCCCC-CcceEeecCCccccccCcc----CCCC-CCCCeEecCCCccccccc----CCcc
Q 041497          202 SLEYIFIHRNIYHGSLPLDIGVNLP-NLRFFIISGNNLTGSLQDS----LSNA-TNLQKLDINRNLFSGKVS----INFG  271 (568)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~L~~n~~~~~~~----~~~~  271 (568)
                                   ..++..+. ..+ +|++|++++|.+++..+..    +..+ ++|++|++++|.+.+...    ..+.
T Consensus       156 -------------~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          156 -------------DELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             -------------HHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             -------------HHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence                         01111222 333 8999999999887665433    3345 599999999999986332    2333


Q ss_pred             C-CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhc------ccccceEEEcccCcccCC
Q 041497          272 G-LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLAN------LSTTMTGIAFGNNQISGF  344 (568)
Q Consensus       272 ~-~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~l~~L~l~~~~l~~~  344 (568)
                      . .++|++|++++|.+......  .+...+..+++|+.|++++|.+.++.+.....      ...+++.|++++|.+.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~--~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLE--NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHH--HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHH--HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3 46999999999999876543  33445678899999999999976655443221      123489999999999876


Q ss_pred             CChhhh
Q 041497          345 IPDGIA  350 (568)
Q Consensus       345 ~~~~~~  350 (568)
                      .+..+.
T Consensus       300 ~~~~~~  305 (362)
T 3goz_A          300 HSIPIS  305 (362)
T ss_dssp             GCHHHH
T ss_pred             chHHHH
Confidence            554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.1e-19  Score=175.32  Aligned_cols=194  Identities=21%  Similarity=0.305  Sum_probs=117.8

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ .+. +..+++|++|++++|++.. + ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            4566777777777777663 34 56777777777777777763 333 7777777777777777763 2 3567777777


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY  213 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (568)
                      +|++++|.+.+. + .+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-S-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-c-cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            777777777643 2 367777777777777777532 2 26666777777777776654332 44555555555555544


Q ss_pred             cccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497          214 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS  263 (568)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~  263 (568)
                      .+ ++.  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.++
T Consensus       186 ~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             Cc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            42 111  224455555555555554332  2444555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.1e-21  Score=192.40  Aligned_cols=257  Identities=15%  Similarity=0.203  Sum_probs=175.5

Q ss_pred             CCceeeccCCcccccCCcccCCC--CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccccc-CchhhcCcCcCcee
Q 041497           59 FLRSINLANNSFRAEIPHEVGNL--FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE-SPAEIGNLLKFQLL  135 (568)
Q Consensus        59 ~L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L  135 (568)
                      .++.++++++.+.   +..+..+  +++++|++++|.+++..+. +..+++|++|++++|.+... ++..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3677787777655   3345555  6778888888777755444 45677888888888777644 56667777778888


Q ss_pred             ecccccCCCCCCcccCCCCCCCeEEeccC-CCCC-CCCccccccccCcEEeeccc-ccccCCCCCCCCCCccEEEeeccc
Q 041497          136 NIAENHLRGQLPASIGNLSALQEINVNGN-RLGG-RIPSTRSHVRNLISFNVGLN-QFSGMFPPINNISSLEYIFIHRNI  212 (568)
Q Consensus       136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~  212 (568)
                      ++++|.+.+..+..++.+++|++|++++| .+.+ ..+..+..+++|++|++++| .+.+.                   
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------------  184 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-------------------  184 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------------------
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-------------------
Confidence            88777776555666777777777777777 3432 13334455555665555555 33311                   


Q ss_pred             ccccCCCcccCCCC-CcceEeecCCc--cc-cccCccCCCCCCCCeEecCCCc-ccccccCCccCCCCCcEEECCCCCCC
Q 041497          213 YHGSLPLDIGVNLP-NLRFFIISGNN--LT-GSLQDSLSNATNLQKLDINRNL-FSGKVSINFGGLQNLSWLNLGKNNLG  287 (568)
Q Consensus       213 ~~~~~~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (568)
                         .++.. +..++ +|++|++++|.  ++ ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|.. 
T Consensus       185 ---~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-  259 (336)
T 2ast_B          185 ---HVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD-  259 (336)
T ss_dssp             ---HHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT-
T ss_pred             ---HHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC-
Confidence               12222 23678 99999999994  44 2345566789999999999999 7766677788999999999999961 


Q ss_pred             CcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhh
Q 041497          288 TRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN  351 (568)
Q Consensus       288 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~  351 (568)
                       ..+.   ....+..+++|+.|++++| +..   ..+......+..|+++.|.+++..|..+..
T Consensus       260 -~~~~---~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          260 -IIPE---TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -CCGG---GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -CCHH---HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence             1111   1134678999999999999 443   233333334778889999999988877765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=8.8e-22  Score=196.84  Aligned_cols=248  Identities=21%  Similarity=0.236  Sum_probs=132.7

Q ss_pred             CcccCCCCCceeeccCCccccc----CCcccCCCCCCcEEeCCCCcCC---CCCCccc-------ccCCCCcEEeccCCc
Q 041497           52 PFVGNLSFLRSINLANNSFRAE----IPHEVGNLFRLQNLTLTNNYFS---GKIPTNL-------SRCSNLVKFEASNNK  117 (568)
Q Consensus        52 ~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~-------~~l~~L~~L~l~~n~  117 (568)
                      ..+..+++|++|++++|.+...    ++..+..+++|++|++++|.+.   +..|..+       ..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3455667777777777766654    2233556777777777765332   2333333       456667777777666


Q ss_pred             ccc----cCchhhcCcCcCceeecccccCCCCCCcccC----CC---------CCCCeEEeccCCCCC-CCC---ccccc
Q 041497          118 LAG----ESPAEIGNLLKFQLLNIAENHLRGQLPASIG----NL---------SALQEINVNGNRLGG-RIP---STRSH  176 (568)
Q Consensus       118 ~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~----~l---------~~L~~L~l~~~~~~~-~~~---~~l~~  176 (568)
                      +..    .++..+..+++|++|++++|.+....+..+.    .+         ++|++|++++|.+.. ..+   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            654    2455566666666666666665422222222    22         666666666666542 222   23445


Q ss_pred             cccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccc----cccCccCCCCCCC
Q 041497          177 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT----GSLQDSLSNATNL  252 (568)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L  252 (568)
                      +++|+.|++++|.+....                  +....+..+ ..+++|+.|++++|.++    ...+..+..+++|
T Consensus       186 ~~~L~~L~L~~n~l~~~g------------------~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEG------------------IEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             CTTCCEEECCSSCCCHHH------------------HHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             CCCcCEEECcCCCCCHhH------------------HHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence            556666666665544110                  000011111 24555666666666553    2344455566666


Q ss_pred             CeEecCCCccccc----ccCCc--cCCCCCcEEECCCCCCCCcCCCCchhhhcc-cCCCcccEEEeccCcccCcC
Q 041497          253 QKLDINRNLFSGK----VSINF--GGLQNLSWLNLGKNNLGTRTANDLDFITLL-TNCTKLEVLVLDSNRFGAVL  320 (568)
Q Consensus       253 ~~L~L~~n~~~~~----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~  320 (568)
                      +.|++++|.+.+.    .+..+  +.+++|+.|++++|.+.....  ..+...+ ..+++|+.|++++|++++..
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--RTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--HHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            6666666666543    12223  236667777777766654210  0122223 44677777777777776655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=2e-19  Score=173.44  Aligned_cols=210  Identities=20%  Similarity=0.339  Sum_probs=139.9

Q ss_pred             eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeeccccc
Q 041497           62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENH  141 (568)
Q Consensus        62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  141 (568)
                      .+.+..+.+.+..  ..+.+++|++|++++|.++ .++ .+..+++|++|++++|++... +. +..+++|++|++++|.
T Consensus        23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNP   96 (308)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCc
Confidence            3344445444322  2456788999999999887 444 588889999999999988743 33 8888899999999888


Q ss_pred             CCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcc
Q 041497          142 LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDI  221 (568)
Q Consensus       142 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  221 (568)
                      +.+.  ..+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+..+ +.                       
T Consensus        97 l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~-----------------------  148 (308)
T 1h6u_A           97 LKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LA-----------------------  148 (308)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GG-----------------------
T ss_pred             CCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-cc-----------------------
Confidence            8753  468888888888888888764 32 36777777777777776654321 33                       


Q ss_pred             cCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhccc
Q 041497          222 GVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT  301 (568)
Q Consensus       222 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  301 (568)
                        .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+....+        +.
T Consensus       149 --~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--------l~  214 (308)
T 1h6u_A          149 --GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--------LA  214 (308)
T ss_dssp             --GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--------GT
T ss_pred             --CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--------cc
Confidence              45556666666665554322  5556666666666666654443  5566666666666666655431        45


Q ss_pred             CCCcccEEEeccCcccCc
Q 041497          302 NCTKLEVLVLDSNRFGAV  319 (568)
Q Consensus       302 ~~~~L~~L~l~~~~~~~~  319 (568)
                      .+++|+.|++++|++++.
T Consensus       215 ~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TCTTCCEEEEEEEEEECC
T ss_pred             CCCCCCEEEccCCeeecC
Confidence            667777777777766553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.1e-19  Score=160.40  Aligned_cols=182  Identities=17%  Similarity=0.173  Sum_probs=127.7

Q ss_pred             CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCC
Q 041497           19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI   98 (568)
Q Consensus        19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   98 (568)
                      ...|.|.++.|..            +.+...+   ..-.++|++|++++|.++...+..+.++++|++|++++|.+++..
T Consensus         4 ~C~C~~~~v~c~~------------~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (208)
T 2o6s_A            4 RCSCSGTTVECYS------------QGRTSVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP   68 (208)
T ss_dssp             TCEEETTEEECCS------------SCCSSCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCEECCCEEEecC------------CCccCCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence            3467888888854            2222221   122357888888888887666666788888888888888888666


Q ss_pred             CcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccc
Q 041497           99 PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR  178 (568)
Q Consensus        99 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  178 (568)
                      +..|..+++|++|++++|+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus        69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence            66677888888888888888765556677888888888888888766666677888888888888887755555567777


Q ss_pred             cCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcc
Q 041497          179 NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDI  221 (568)
Q Consensus       179 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  221 (568)
                      +|+.|++++|.+..      .++.|+.|++..+.+.+.+|..+
T Consensus       149 ~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          149 SLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             TCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             CccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccC
Confidence            78888877775543      24455556555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=2.4e-21  Score=193.75  Aligned_cols=252  Identities=17%  Similarity=0.190  Sum_probs=145.2

Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCCCC----cccccCCCCcEEeccCCcc---cccCchhh-------cCcCcCceeeccc
Q 041497           74 IPHEVGNLFRLQNLTLTNNYFSGKIP----TNLSRCSNLVKFEASNNKL---AGESPAEI-------GNLLKFQLLNIAE  139 (568)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~l~~  139 (568)
                      ++..+..+++|++|++++|.++...+    ..+..+++|++|++++|.+   .+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            45555666666677776666653322    2244566666666666432   22333333       4455555555555


Q ss_pred             ccCCC----CCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCC---------CCccEE
Q 041497          140 NHLRG----QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNI---------SSLEYI  206 (568)
Q Consensus       140 ~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~---------~~L~~L  206 (568)
                      |.+..    .++..+..+++|++|++++|.+....+..+..                   .+..+         ++|+.|
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------------------ALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-------------------HHHHHHHHHHHHTCCCCCEE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-------------------HHHHHhhhhhcccCCCCcEE
Confidence            55543    13334444555555555555443211111111                   11111         455555


Q ss_pred             Eeecccccc-cCCC--cccCCCCCcceEeecCCcccc-----ccCccCCCCCCCCeEecCCCccc----ccccCCccCCC
Q 041497          207 FIHRNIYHG-SLPL--DIGVNLPNLRFFIISGNNLTG-----SLQDSLSNATNLQKLDINRNLFS----GKVSINFGGLQ  274 (568)
Q Consensus       207 ~l~~~~~~~-~~~~--~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~L~~n~~~----~~~~~~~~~~~  274 (568)
                      ++++|.+.. .++.  ..+..+++|++|++++|.+..     ..+..+..+++|+.|+|++|.++    ...+..+..++
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            555555441 2221  122256788888888887763     23336778888999999999885    34455677888


Q ss_pred             CCcEEECCCCCCCCcCCCCchhhhcc--cCCCcccEEEeccCcccC----cCchhhhcccccceEEEcccCcccCCCC
Q 041497          275 NLSWLNLGKNNLGTRTANDLDFITLL--TNCTKLEVLVLDSNRFGA----VLPFSLANLSTTMTGIAFGNNQISGFIP  346 (568)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~l~~L~l~~~~l~~~~~  346 (568)
                      +|++|++++|.+......  .+...+  ..+++|+.|++++|.+++    ..+..+....++++.|++++|.+++..+
T Consensus       245 ~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAA--AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTCCCCHHHHH--HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCEEECCCCCCchhhHH--HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            899999998887654221  223344  347888899998888877    2444442322448888888888876653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.5e-18  Score=158.32  Aligned_cols=157  Identities=22%  Similarity=0.249  Sum_probs=113.2

Q ss_pred             eeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCC
Q 041497          375 MLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDN  454 (568)
Q Consensus       375 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n  454 (568)
                      .++++++.++ .+|..+.  +.++.|++++|.+++..+..+..+++|                         +.|+|++|
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-------------------------~~L~Ls~N   66 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-------------------------RRIDLSNN   66 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-------------------------CEEECCSS
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-------------------------CEEECCCC
Confidence            4455555544 2232222  345555555555554444445555555                         55556666


Q ss_pred             cccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCc
Q 041497          455 LLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ  533 (568)
Q Consensus       455 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  533 (568)
                      .+++..+..|..+++|++|++++|+++...+..+. +++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+.
T Consensus        67 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           67 QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            66656677888888999999999988855555555 88999999999999888888888899999999999999888788


Q ss_pred             cccccccCCeeecccCcccccCCCCc
Q 041497          534 YLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       534 ~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      .|..+++|+.|++++|++.|.|+..|
T Consensus       147 ~~~~l~~L~~L~L~~N~~~c~c~l~~  172 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFICDCHLKW  172 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             HHhCCCCCCEEEeCCCCcCCCCccHH
Confidence            88888999999999999998887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=6.6e-18  Score=166.05  Aligned_cols=220  Identities=16%  Similarity=0.094  Sum_probs=122.0

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCC-cccccCCCCcE-EeccCCcccccCchhhcCcCcCcee
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIP-TNLSRCSNLVK-FEASNNKLAGESPAEIGNLLKFQLL  135 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L  135 (568)
                      +++++|++++|.++...+.+|+++++|++|++++|.+.+.++ ..|.+++++++ +.+..|++....+..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            467788888888775444567788888888888887654333 45677777664 4455567776666677777777777


Q ss_pred             ecccccCCCCCCcccCCCCCCCeEEeccC-CCCCCCCccccccc-cCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497          136 NIAENHLRGQLPASIGNLSALQEINVNGN-RLGGRIPSTRSHVR-NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY  213 (568)
Q Consensus       136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (568)
                      ++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|.+..                     
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~---------------------  168 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---------------------  168 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---------------------
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---------------------
Confidence            77777776555455555566666666543 33322222333332 34555555555543                     


Q ss_pred             cccCCCcccCCCCCcceEeecC-CccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCC-CCCcCC
Q 041497          214 HGSLPLDIGVNLPNLRFFIISG-NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN-LGTRTA  291 (568)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~  291 (568)
                         ++..++ ...+|+++++.+ |.++.+.+..|..+++|+.|++++|+++.+.+..+   .+|+.|.+.++. +...+ 
T Consensus       169 ---i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-  240 (350)
T 4ay9_X          169 ---IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-  240 (350)
T ss_dssp             ---ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-
T ss_pred             ---CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-
Confidence               333333 334455555543 34443333445555566666666665554443332   333444433332 22221 


Q ss_pred             CCchhhhcccCCCcccEEEecc
Q 041497          292 NDLDFITLLTNCTKLEVLVLDS  313 (568)
Q Consensus       292 ~~~~~~~~l~~~~~L~~L~l~~  313 (568)
                             .+..+++|+.+++.+
T Consensus       241 -------~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 -------TLEKLVALMEASLTY  255 (350)
T ss_dssp             -------CTTTCCSCCEEECSC
T ss_pred             -------CchhCcChhhCcCCC
Confidence                   144556666666643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=2.1e-18  Score=169.53  Aligned_cols=240  Identities=17%  Similarity=0.159  Sum_probs=155.7

Q ss_pred             eeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCc-hhhcCcCcCce-eecccc
Q 041497           63 INLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESP-AEIGNLLKFQL-LNIAEN  140 (568)
Q Consensus        63 L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~~  140 (568)
                      ++.++++++ .+|..+  .+++++|++++|+++.+.++.|.++++|++|++++|++.+.++ ..|.+++++++ +.+..|
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            344444444 455544  2567888888888875555667888888888888887654443 45667777664 445556


Q ss_pred             cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCc
Q 041497          141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD  220 (568)
Q Consensus       141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  220 (568)
                      ++....+..|..+++|++|++++|.+....+..+....++..+++                       ..+.....++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l-----------------------~~~~~i~~l~~~  147 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-----------------------QDNINIHTIERN  147 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE-----------------------ESCTTCCEECTT
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh-----------------------cccccccccccc
Confidence            676555666777777777777777765433333333344444444                       332222244444


Q ss_pred             ccCCC-CCcceEeecCCccccccCccCCCCCCCCeEecCC-CcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhh
Q 041497          221 IGVNL-PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR-NLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT  298 (568)
Q Consensus       221 ~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (568)
                      .+... ..++.|++++|+++.+.+..+ ...+|+++++.+ |.+..+.+..|+.+++|++|++++|.++.++..      
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~------  220 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY------  220 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS------
T ss_pred             chhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh------
Confidence            44344 468899999999996655555 456899999985 667777777889999999999999999988754      


Q ss_pred             cccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCc
Q 041497          299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ  340 (568)
Q Consensus       299 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  340 (568)
                         .+.+|+.|.+.++......| .+..+ .+|+.+++.++.
T Consensus       221 ---~~~~L~~L~~l~~~~l~~lP-~l~~l-~~L~~l~l~~~~  257 (350)
T 4ay9_X          221 ---GLENLKKLRARSTYNLKKLP-TLEKL-VALMEASLTYPS  257 (350)
T ss_dssp             ---SCTTCCEEECTTCTTCCCCC-CTTTC-CSCCEEECSCHH
T ss_pred             ---hhccchHhhhccCCCcCcCC-CchhC-cChhhCcCCCCc
Confidence               34567777765554333333 23344 348888887653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=4.3e-19  Score=175.24  Aligned_cols=182  Identities=20%  Similarity=0.113  Sum_probs=139.5

Q ss_pred             CeeECccCccccccCccccCcccccccccccccccCCCCCCcc-CCCCceEEEcccCCCCCCCCCchhHHhhhceEEEcc
Q 041497          374 QMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG-NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS  452 (568)
Q Consensus       374 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls  452 (568)
                      +.++++++.++. +|..+.  ..++.|++++|.+++..+..+. ++++|+.|++++|.+.+..+..+..+..+ +.|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECC
Confidence            456666666553 333332  3466677777777666666665 67777777777777766666666666666 778888


Q ss_pred             CCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccC---cCCCCCCEEeCCCCccc
Q 041497          453 DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTL---SSLKSITELDLSRNNLS  528 (568)
Q Consensus       453 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~  528 (568)
                      +|.+++..+..|..+++|++|+|++|+++...+..+. +++|+.|+|++|.++...+..|   ..+++|+.||+++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            8888877777899999999999999999977788887 9999999999999996655556   57999999999999999


Q ss_pred             cCcCcccccccc--CCeeecccCcccccCCCCc
Q 041497          529 GHIPQYLENLSF--LSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       529 ~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~~  559 (568)
                      ...+..+..++.  ++.|++++|++.|.|...|
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~  209 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ  209 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence            877788888887  4899999999999998654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=157.76  Aligned_cols=138  Identities=20%  Similarity=0.228  Sum_probs=105.2

Q ss_pred             ceEEEcccCCCCCCCCC-chhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeec
Q 041497          421 LILLTTRKNKPSGTMPR-QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCM  498 (568)
Q Consensus       421 L~~L~l~~~~~~~~~~~-~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L  498 (568)
                      +++|++++|.+.+..+. .+..+..+ +.|++++|.+++..+..|..+++|++|++++|++++..+..+. +++|++|+|
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34555555555444322 23344444 6666667777666666788888999999999988866666676 889999999


Q ss_pred             ccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          499 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       499 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      ++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++.|.|+..|
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  173 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW  173 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence            9999888878888888999999999999988888888889999999999999999888654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=7.8e-18  Score=152.56  Aligned_cols=177  Identities=19%  Similarity=0.289  Sum_probs=127.8

Q ss_pred             ceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccc
Q 041497           61 RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN  140 (568)
Q Consensus        61 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  140 (568)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|++....+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46777777766 455544  468999999999998666667888999999999999988666666788899999999999


Q ss_pred             cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCC
Q 041497          141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPL  219 (568)
Q Consensus       141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~  219 (568)
                      .+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            8886666667888899999999888876555567778888888888887775544 35556666666666554331    


Q ss_pred             cccCCCCCcceEeecCCccccccCccCCC
Q 041497          220 DIGVNLPNLRFFIISGNNLTGSLQDSLSN  248 (568)
Q Consensus       220 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  248 (568)
                          .++.|+.|++..|.+++..|.+++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCcc
Confidence                3445555555555555555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=5.6e-18  Score=155.67  Aligned_cols=165  Identities=19%  Similarity=0.193  Sum_probs=114.5

Q ss_pred             CCCCCCCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCC
Q 041497           13 SSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNN   92 (568)
Q Consensus        13 ~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n   92 (568)
                      ..|..+...|.|.++.|...            .+...+ ..+  .++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~------------~l~~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N   74 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSK------------RHASVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN   74 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTS------------CCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hccCCCCCEEeCCEeEccCC------------CcCccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence            35556778999999999642            222211 111  266777777777777666777777777777777777


Q ss_pred             cCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCc
Q 041497           93 YFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPS  172 (568)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  172 (568)
                      .++...+..|..+++|++|++++|+++...+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+.
T Consensus        75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            777555556677777777777777777555555677777777777777777 5666777777777777777777755455


Q ss_pred             cccccccCcEEeecccccccC
Q 041497          173 TRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       173 ~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      .+..+++|+.|++++|.+...
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTT
T ss_pred             HHhCCCCCCEEEeeCCCccCC
Confidence            677777777777777776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=2.8e-18  Score=157.72  Aligned_cols=144  Identities=22%  Similarity=0.228  Sum_probs=102.9

Q ss_pred             CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceee
Q 041497          419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLC  497 (568)
Q Consensus       419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~  497 (568)
                      ++|++|++++|.+.+..+..+..+..+ +.|++++|.++...+..|..+++|++|++++|+++...+..+. +++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            444444444444444444444444444 5556666666655556678888888888888888866566665 88888888


Q ss_pred             cccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497          498 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE  564 (568)
Q Consensus       498 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~  564 (568)
                      |++|.++ .+|..+..+++|+.|++++|.++...+..|..+++|+.|++++|++.|.|+....+..|
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~  184 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW  184 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence            8888888 66777888888899999988888777777888888899999999988888744333333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=7.4e-19  Score=181.69  Aligned_cols=213  Identities=17%  Similarity=0.243  Sum_probs=146.9

Q ss_pred             CCCCCCCCCCCc-----eeeec-eeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCC
Q 041497           11 VTSSWNNSINLC-----QWTGV-TCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRL   84 (568)
Q Consensus        11 ~~~~~~~~~~~c-----~~~~~-~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L   84 (568)
                      .+..|.....+|     .|.++ .|.  ..+++.|++++|.+.+.+ ..+  +++|++|++++|.++ .+|   ..+++|
T Consensus        32 ~l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L  102 (571)
T 3cvr_A           32 AWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALI-SLP---ELPASL  102 (571)
T ss_dssp             HHHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred             HHHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCccC-HhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence            455787777788     57777 674  257899999999998843 333  378999999999988 567   457899


Q ss_pred             cEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccC
Q 041497           85 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGN  164 (568)
Q Consensus        85 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  164 (568)
                      ++|++++|.+++ +|. +..  +|++|++++|++++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|
T Consensus       103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN  170 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence            999999999985 666 554  89999999999885 555   67899999999998885 444   5688899999998


Q ss_pred             CCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCc
Q 041497          165 RLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD  244 (568)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  244 (568)
                      .+.+ +|. +.  ++|+.|++++|.+..... +..  +|                  ....+.|+.|++++|.++. +|.
T Consensus       171 ~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~~-lp~  224 (571)
T 3cvr_A          171 QLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RN------------------HHSEETEIFFRCRENRITH-IPE  224 (571)
T ss_dssp             CCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------------------------CCEEEECCSSCCCC-CCG
T ss_pred             CCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hh------------------hcccccceEEecCCCccee-cCH
Confidence            8874 665 54  778888888887764332 221  23                  0011223666666666553 344


Q ss_pred             cCCCCCCCCeEecCCCcccccccCCc
Q 041497          245 SLSNATNLQKLDINRNLFSGKVSINF  270 (568)
Q Consensus       245 ~l~~~~~L~~L~L~~n~~~~~~~~~~  270 (568)
                      .+..+++|+.|++++|.+++..|..+
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            44456666666666666655544443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.5e-18  Score=162.41  Aligned_cols=172  Identities=27%  Similarity=0.312  Sum_probs=128.3

Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL  449 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l  449 (568)
                      +++|+.|++++|.+...  ..+..+++|+.|++++|++++..+  +..+++|++|++++|.+.+.  ..+..+..+ +.|
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL-KSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC-CEE
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC-CEE
Confidence            67778888888877643  347778888888888888876544  77788888888888877652  235555566 888


Q ss_pred             EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      ++++|.+++.  ..+..+++|++|++++|++++ ++....+++|+.|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            8888888753  467788888888888888874 3332338888888888888886544  7888888888888888886


Q ss_pred             CcCccccccccCCeeecccCcccccC
Q 041497          530 HIPQYLENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       530 ~~~~~~~~l~~L~~L~l~~n~i~~~~  555 (568)
                      . + .+..+++|+.|++++|++....
T Consensus       193 l-~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 L-R-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             C-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             C-h-hhccCCCCCEEECcCCcccCCc
Confidence            4 3 3788888888888888887643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.3e-17  Score=152.14  Aligned_cols=135  Identities=20%  Similarity=0.263  Sum_probs=105.1

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      +++++|++++|.+....+..|..+++|++|++++|.+++..|..|.++++|++|++++|+++...+..|..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            57788888888877666667778888888888888887666777888888888888888887555555677888888888


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG  192 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (568)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8888887777778888888888888888876666667778888888888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=3.6e-17  Score=149.14  Aligned_cols=153  Identities=16%  Similarity=0.205  Sum_probs=130.5

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCC-cccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIP-HEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      .++++++.+...+. .+  ...+++|++++|.++...+ ..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        15 ~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            67777787776433 33  3456899999999986644 45789999999999999998777778999999999999999


Q ss_pred             cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497          117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      ++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99877777899999999999999999988888899999999999999999887788999999999999999988754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=3.4e-17  Score=171.30  Aligned_cols=182  Identities=23%  Similarity=0.298  Sum_probs=83.8

Q ss_pred             EEcccCcccCCCChhhhhhccccccCccccccchh----hccCCCeeECccCccccccCccccCcccccccccccccccC
Q 041497          334 IAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT----ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLG  409 (568)
Q Consensus       334 L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  409 (568)
                      +.+..+.+.+..+  +..+++|+.|++++|.+...    .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence            3444444443322  34555555555555554321    14555555555555543322  4555555555555555543


Q ss_pred             CCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc
Q 041497          410 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG  489 (568)
Q Consensus       410 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  489 (568)
                      .  ..+..+++|+.|++++|.+.+.  ..+..+..+ +.|+|++|.+++.  ..+..+++|+.|+|++|++++..| ...
T Consensus       102 l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~  173 (605)
T 1m9s_A          102 L--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG  173 (605)
T ss_dssp             C--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred             C--hhhccCCCCCEEEecCCCCCCC--ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence            1  2445555555555555554431  223333333 4445555544432  344444555555555554443222 111


Q ss_pred             ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      +++|+.|+|++|.+++.  ..+..+++|+.|++++|++..
T Consensus       174 l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            44555555555544432  234444455555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=8.5e-17  Score=153.51  Aligned_cols=185  Identities=18%  Similarity=0.292  Sum_probs=123.0

Q ss_pred             eccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccc
Q 041497           40 DLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA  119 (568)
Q Consensus        40 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  119 (568)
                      .+..+.+.+..  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++.
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence            34444444322  24566777777777776653 33 36677777777777777764332  677777777777777775


Q ss_pred             ccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCC
Q 041497          120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN  199 (568)
Q Consensus       120 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~  199 (568)
                      .  ...+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+...  ..+..+++|+.|++++|.+.+..+ +..
T Consensus       104 ~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~  176 (291)
T 1h6t_A          104 D--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG  176 (291)
T ss_dssp             C--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred             C--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcC
Confidence            3  23466777777777777777643  4566777777777777777643  566777777777777777766544 667


Q ss_pred             CCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccc
Q 041497          200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG  240 (568)
Q Consensus       200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (568)
                      +++|+.|++++|.+.+ ++.  ...+++|+.|++++|.+..
T Consensus       177 l~~L~~L~L~~N~i~~-l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CTTCCEEECCSSCCCB-CGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             CCccCEEECCCCcCCC-Chh--hccCCCCCEEECcCCcccC
Confidence            7777777777777663 332  3367788888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=2.9e-17  Score=169.80  Aligned_cols=185  Identities=23%  Similarity=0.350  Sum_probs=90.7

Q ss_pred             cceEEEcccCcccCCCChhhhhhccccccCccccccchh--hccCCCeeECccCccccccCccccCcccccccccccccc
Q 041497          330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT--ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL  407 (568)
Q Consensus       330 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  407 (568)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.+...  .+++|+.|++++|.+++ ++. +..  +|+.|++++|.+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence            47788888888776 34333  24555555555554321  14555555555555554 333 332  555555555555


Q ss_pred             cCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497          408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT  487 (568)
Q Consensus       408 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  487 (568)
                      ++ +|.   .+++|+.|++++|.+.+ +|.   .+..+ +.|++++|.+++ +|. +.  ++|+.|++++|.++ .+|. 
T Consensus       133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence            44 222   34555555555555543 222   11222 555555555553 332 33  45555555555554 3443 


Q ss_pred             cccccc-------ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccccc
Q 041497          488 LGCTSL-------EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  538 (568)
Q Consensus       488 ~~~~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  538 (568)
                      +. .+|       +.|+|++|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       198 ~~-~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 VP-VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HH-HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            22 144       55555555555 344444445555555555555555444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=3.2e-17  Score=161.78  Aligned_cols=154  Identities=16%  Similarity=0.243  Sum_probs=87.0

Q ss_pred             CCceeeccCCcccccCCcccC-CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           59 FLRSINLANNSFRAEIPHEVG-NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        59 ~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      .+++|++++|.++...+..+. ++++|++|++++|.++...+..|..+++|++|++++|++....+..|..+++|++|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            355666666666554444454 5666666666666666555555666666666666666665554555566666666666


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcc-c---cccccCcEEeecccccccCCC-CCCCCCC--ccEEEeec
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST-R---SHVRNLISFNVGLNQFSGMFP-PINNISS--LEYIFIHR  210 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l---~~l~~L~~L~l~~~~~~~~~~-~l~~~~~--L~~L~l~~  210 (568)
                      ++|.+.+..+..|..+++|++|++++|.+.. +|.. +   ..+++|+.|++++|.+..... .+..++.  ++.|++++
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            6666655555556666666666666666653 3332 2   345666666666666554433 3444444  35566665


Q ss_pred             ccc
Q 041497          211 NIY  213 (568)
Q Consensus       211 ~~~  213 (568)
                      |.+
T Consensus       199 N~~  201 (361)
T 2xot_A          199 NPL  201 (361)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.7e-17  Score=145.31  Aligned_cols=149  Identities=12%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  113 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  113 (568)
                      ++++.|++++|.+....  .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            44555555555555322  3555555555555555443  2234555555555555555555444555555555555555


Q ss_pred             cCCcccccCchhhcCcCcCceeeccccc-CCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497          114 SNNKLAGESPAEIGNLLKFQLLNIAENH-LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF  190 (568)
Q Consensus       114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (568)
                      ++|++....+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            5555554445555555555555555555 33 232 35555555555555555542 22 445555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=4.8e-17  Score=170.12  Aligned_cols=163  Identities=18%  Similarity=0.310  Sum_probs=92.8

Q ss_pred             EeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcc
Q 041497           39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL  118 (568)
Q Consensus        39 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  118 (568)
                      +++..+.+.+..  .+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+  +..+++|++|+|++|.+
T Consensus        26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            444444444432  24566667777777766652 33 46666777777777776663332  66667777777777666


Q ss_pred             cccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCC
Q 041497          119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPIN  198 (568)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~  198 (568)
                      .. + ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+ +.
T Consensus       100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~  172 (605)
T 1m9s_A          100 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA  172 (605)
T ss_dssp             CC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred             CC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hc
Confidence            53 2 2566666666666666666532  3456666666666666666532  445555666666666555554333 44


Q ss_pred             CCCCccEEEeeccccc
Q 041497          199 NISSLEYIFIHRNIYH  214 (568)
Q Consensus       199 ~~~~L~~L~l~~~~~~  214 (568)
                      .+++|+.|++++|.+.
T Consensus       173 ~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             TCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCCCC
Confidence            4444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=6.8e-17  Score=144.81  Aligned_cols=153  Identities=17%  Similarity=0.264  Sum_probs=102.6

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      ...+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++....+..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            356777888888887776 445 5777778888888877665  234677777888888888777765666777777777


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCC-CCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccc
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNR-LGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNI  212 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  212 (568)
                      +|++++|.+.+..+..++.+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            77777777776566677777777777777776 43 333 5666777777777777665432 44444445555444444


Q ss_pred             c
Q 041497          213 Y  213 (568)
Q Consensus       213 ~  213 (568)
                      +
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.3e-16  Score=142.10  Aligned_cols=112  Identities=26%  Similarity=0.372  Sum_probs=76.0

Q ss_pred             eEEEccCCcccccCch-hhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCC
Q 041497          447 VLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR  524 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  524 (568)
                      +.|++++|.+++..+. .+..+++|++|++++|++++..|..+. +++|+.|+|++|++++..+..|..+++|++|++++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            5556666666544432 366677777777777777666566665 67777777777777766666677777777777777


Q ss_pred             CccccCcCccccccccCCeeecccCcccccCCCC
Q 041497          525 NNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       525 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      |.+++..|..|..+++|+.|++++|++.|.|+..
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A          112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             CcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence            7777666667777777777777777777777644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=5.1e-17  Score=152.51  Aligned_cols=168  Identities=21%  Similarity=0.179  Sum_probs=127.3

Q ss_pred             hhccccccCccccccch----hhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEc
Q 041497          351 NLVNLNALGVEFNQLAV----TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT  426 (568)
Q Consensus       351 ~~~~L~~l~l~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  426 (568)
                      .+.++..++++.+.+..    ..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+  +..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            45667777888777653    338899999999998874 33 68889999999999999886554  888999999999


Q ss_pred             ccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeeccccccccc
Q 041497          427 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGS  506 (568)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~  506 (568)
                      ++|++.+..+...   ..+ +.|++++|++++.  ..+..+++|++|++++|++++ ++....+++|+.|++++|.+++.
T Consensus        93 ~~N~l~~l~~~~~---~~L-~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNLNGIPS---ACL-SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCCTTCCC---SSC-CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCcCcccc---Ccc-cEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcCcch
Confidence            9998876432222   444 8888888888753  357888888888888888874 44322388888888888888755


Q ss_pred             CCccCcCCCCCCEEeCCCCccccCc
Q 041497          507 IPSTLSSLKSITELDLSRNNLSGHI  531 (568)
Q Consensus       507 ~~~~~~~l~~L~~L~l~~n~l~~~~  531 (568)
                        ..+..+++|+.|++++|++....
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             --HHhccCCCCCEEeCCCCcccCCc
Confidence              56778888888888888887553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=9.1e-16  Score=143.96  Aligned_cols=166  Identities=19%  Similarity=0.267  Sum_probs=98.0

Q ss_pred             eEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEecc
Q 041497           35 RVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  114 (568)
Q Consensus        35 ~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  114 (568)
                      .++.++++.+.+.+..  .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444556666665543  4566677777777777665 334 56666777777777776663332  6666777777777


Q ss_pred             CCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCC
Q 041497          115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF  194 (568)
Q Consensus       115 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (568)
                      +|++++ ++. +.. ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+. 
T Consensus        94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-I-VMLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-C-GGGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-C-hHHccCCCCCEEECCCCcCcch-
Confidence            776653 222 222 6677777777666542  346666667777776666653 2 2456666666666666666544 


Q ss_pred             CCCCCCCCccEEEeeccccc
Q 041497          195 PPINNISSLEYIFIHRNIYH  214 (568)
Q Consensus       195 ~~l~~~~~L~~L~l~~~~~~  214 (568)
                      ..+..+++|+.|++++|.+.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEE
T ss_pred             HHhccCCCCCEEeCCCCccc
Confidence            34444555555555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=9.7e-16  Score=136.40  Aligned_cols=112  Identities=28%  Similarity=0.329  Sum_probs=99.4

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.|++++|.++ .+|..|..+++|++|++++|.+++..+..|. +++|+.|+|++|.++...+..|..+++|+.|++++|
T Consensus        34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence            77788888887 5667899999999999999999977777777 999999999999999888888999999999999999


Q ss_pred             ccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      .++...+..|..+++|+.|++++|++.|.|+..|
T Consensus       113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~  146 (193)
T 2wfh_A          113 DISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW  146 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             CCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence            9998777789999999999999999999998654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.9e-16  Score=154.30  Aligned_cols=261  Identities=13%  Similarity=0.085  Sum_probs=155.7

Q ss_pred             CeEEEEeccCCccccccCCcccC-CCCCceeeccCCccc--ccCCcccCCCCCCcEEeCCCCcCCCCCCccccc------
Q 041497           34 QRVIGLDLRHQSIGGFLSPFVGN-LSFLRSINLANNSFR--AEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSR------  104 (568)
Q Consensus        34 ~~i~~L~l~~~~i~~~~~~~~~~-~~~L~~L~ls~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------  104 (568)
                      ..+++|+++++ +.......+.. +++|++||+++|.+.  .....   .++.++.+.+..+.   +...+|.+      
T Consensus        25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred             CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccccc
Confidence            45667777654 22111122333 677888888887766  11111   11112333333332   22334445      


Q ss_pred             --CCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCC----CCCCCCccccccc
Q 041497          105 --CSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNR----LGGRIPSTRSHVR  178 (568)
Q Consensus       105 --l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~l~  178 (568)
                        |++|+.|++.+ .++.+.+.+|.+|++|+.|++.+|.+....+..|..+.++..+......    .......++..+.
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence              66666666655 5554445556666666666666665554445555555555444443311    0101112222222


Q ss_pred             --------------------------cCcEEeecccccccCCCCC-CCCCCccEEEeecccccccCCCcccCCCCCcceE
Q 041497          179 --------------------------NLISFNVGLNQFSGMFPPI-NNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF  231 (568)
Q Consensus       179 --------------------------~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (568)
                                                ++..+.+.+.-.......+ ..+++|+.+++..|.+. .++...|.++.+|+.+
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEE
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEE
Confidence                                      3333333332111111111 13688999999888776 7888888889999999


Q ss_pred             eecCCccccccCccCCCCCCCC-eEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEE
Q 041497          232 IISGNNLTGSLQDSLSNATNLQ-KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV  310 (568)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  310 (568)
                      ++.++ +..+...+|.++++|+ .+++.+ .+..+.+.+|.++++|+.+++..+.+..+...      .|.+|++|+.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~------aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE------LFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT------TTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh------hhcCCcchhhhc
Confidence            99887 7777788899999999 999988 77778888899999999999988888887765      477889998876


Q ss_pred             e
Q 041497          311 L  311 (568)
Q Consensus       311 l  311 (568)
                      .
T Consensus       328 ~  328 (329)
T 3sb4_A          328 K  328 (329)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=2.2e-16  Score=153.83  Aligned_cols=286  Identities=15%  Similarity=0.131  Sum_probs=182.0

Q ss_pred             CCCCCceeeccCCcccccCCcccCC-CCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcC------
Q 041497           56 NLSFLRSINLANNSFRAEIPHEVGN-LFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGN------  128 (568)
Q Consensus        56 ~~~~L~~L~ls~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------  128 (568)
                      .+.++++|.++++ +.......+.. +++|++|+|++|++. .....-+.++.++.+.+..+.+   ...+|.+      
T Consensus        23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~   97 (329)
T 3sb4_A           23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred             hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCcccccccccccccccccc---CHHHhcccccccc
Confidence            4678999999865 22111223333 889999999999887 1111112223355566666543   3566777      


Q ss_pred             --cCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc----ccCCC-CCCCCC
Q 041497          129 --LLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF----SGMFP-PINNIS  201 (568)
Q Consensus       129 --l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~-~l~~~~  201 (568)
                        +++|+.|++.+ .+..+...+|..|++|+.+++.+|.+....+.+|..+.++..+.......    ..... .+..+.
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence              99999999999 88777778899999999999999988766677788877777776655322    11111 455555


Q ss_pred             Ccc-EEEeecccccccCCCccc---CCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCc
Q 041497          202 SLE-YIFIHRNIYHGSLPLDIG---VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS  277 (568)
Q Consensus       202 ~L~-~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~  277 (568)
                      .|+ .+.+....   .++..++   ....+++.+.+.+.-...........+++|+.+++++|.++.+...+|..+++|+
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            665 33333221   1111111   1234455555554321111111111367788888888777777777788888888


Q ss_pred             EEECCCCCCCCcCCCCchhhhcccCCCccc-EEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhcccc
Q 041497          278 WLNLGKNNLGTRTANDLDFITLLTNCTKLE-VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLN  356 (568)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~  356 (568)
                      .+++.++ +..+...      .|..|++|+ .+++.+ .++.+.+..|.++.. |+.+++..+.++.+.+.+|..+++|+
T Consensus       254 ~l~l~~n-i~~I~~~------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~-L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQR------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN-LRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EEECCTT-CCEECTT------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTT-EEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             EEECCcc-cceehHH------HhhCChhccEEEEEcc-cceEEchhhhhCCcc-CCEEEeCCCccCccchhhhcCCcchh
Confidence            8888776 5555543      466778887 888877 666666677777655 88888877777777777888877776


Q ss_pred             ccC
Q 041497          357 ALG  359 (568)
Q Consensus       357 ~l~  359 (568)
                      .++
T Consensus       325 ~ly  327 (329)
T 3sb4_A          325 LIY  327 (329)
T ss_dssp             EEE
T ss_pred             hhc
Confidence            654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=1.2e-17  Score=173.69  Aligned_cols=108  Identities=26%  Similarity=0.281  Sum_probs=91.1

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++ +++|+.|+|++|.+++ +| .+..+++|+.|++++|
T Consensus       444 ~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          444 RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            778888888885 454 888889999999999888 7777777 8899999999999885 55 7888899999999999


Q ss_pred             ccccCc-CccccccccCCeeecccCcccccCCCCc
Q 041497          526 NLSGHI-PQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       526 ~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      .+++.. |..|..+++|+.|++++|++++.+|...
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence            988776 8888899999999999999988887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=3.9e-17  Score=169.77  Aligned_cols=121  Identities=21%  Similarity=0.249  Sum_probs=100.7

Q ss_pred             CceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeec
Q 041497          420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCM  498 (568)
Q Consensus       420 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L  498 (568)
                      .|+.|++++|.+.+ +|. +..+..+ +.|++++|.++ .+|..++.+++|+.|++++|++++ +| .++ +++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            47778888887775 454 6666666 88899999988 778899999999999999999985 67 555 999999999


Q ss_pred             ccccccccC-CccCcCCCCCCEEeCCCCccccCcCc---cccccccCCeeec
Q 041497          499 QDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIPQ---YLENLSFLSFLNL  546 (568)
Q Consensus       499 s~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l  546 (568)
                      ++|.+++.. |..+..+++|+.|++++|++++.+|.   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999776 89999999999999999999976553   3445789998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=1.9e-15  Score=132.90  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=94.6

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.|++++|.+++..+..+..+++|++|++++|++++..+..+. +++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            6777777777766666788889999999999999865556565 899999999999999777777888999999999999


Q ss_pred             ccccCcCccccccccCCeeecccCcccccCCCC
Q 041497          526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      .+++..+..+..+++|++|++++|++.|.||..
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  143 (177)
T 2o6r_A          111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  143 (177)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             cceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence            999777777888999999999999999998854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=3.1e-16  Score=168.31  Aligned_cols=203  Identities=20%  Similarity=0.182  Sum_probs=102.8

Q ss_pred             CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCcee-----eccCCcccccCCcccCCCCCCcEEeCCCCc
Q 041497           19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSI-----NLANNSFRAEIPHEVGNLFRLQNLTLTNNY   93 (568)
Q Consensus        19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L-----~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~   93 (568)
                      ...+.|.+..++.  .+++.|+|.++.+...... +.....|+.+     +++.|.+. ..+..+..++.|++|+|++|.
T Consensus       160 ~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~  235 (727)
T 4b8c_D          160 TPSGTATNSAVST--PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQ  235 (727)
T ss_dssp             ------------------------------------------------------------------CCCCCCEEECTTSC
T ss_pred             CccccCCCceecC--CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCC
Confidence            3456677776654  7788999988877764322 2222223332     23333333 456678888888888888888


Q ss_pred             CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcc
Q 041497           94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST  173 (568)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  173 (568)
                      +. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..
T Consensus       236 l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          236 IF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             CS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             CC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence            87 67777778888888888888888 77888888888888888888888 66888888888888888888886 67777


Q ss_pred             ccccccCcEEeecccccccCCC-CCCCCC-CccEEEeecccccccCCCcccCCCCCcceEeecCC
Q 041497          174 RSHVRNLISFNVGLNQFSGMFP-PINNIS-SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN  236 (568)
Q Consensus       174 l~~l~~L~~L~l~~~~~~~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  236 (568)
                      +..+++|+.|++++|.+.+..+ .+.... ....+++++|.+.+.+|.       .|+.|+++.|
T Consensus       312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n  369 (727)
T 4b8c_D          312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD  369 (727)
T ss_dssp             TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred             hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence            8888888888888888776544 222211 112345556655544442       3445555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.8e-15  Score=130.59  Aligned_cols=132  Identities=18%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             CeEEEEeccCCccc-cccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497           34 QRVIGLDLRHQSIG-GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  112 (568)
Q Consensus        34 ~~i~~L~l~~~~i~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  112 (568)
                      +.++.|++++|.+. +..+..+..+++|++|++++|.+...  ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666777766665 44455566666677777766666543  5566666666666666666644555555666666666


Q ss_pred             ccCCcccccC-chhhcCcCcCceeecccccCCCCCC---cccCCCCCCCeEEeccCCCC
Q 041497          113 ASNNKLAGES-PAEIGNLLKFQLLNIAENHLRGQLP---ASIGNLSALQEINVNGNRLG  167 (568)
Q Consensus       113 l~~n~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~~  167 (568)
                      +++|++++.. +..+..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666665321 1456666666666666666664332   25566666666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=1.1e-13  Score=137.51  Aligned_cols=267  Identities=10%  Similarity=0.074  Sum_probs=178.3

Q ss_pred             cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497           55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL  134 (568)
Q Consensus        55 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  134 (568)
                      ..+..++.+.+..+ ++.....+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|.+|.+|+.
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            34466777777654 443455566664 6888887765 554666667664 588888875 555566677788888888


Q ss_pred             eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccc
Q 041497          135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIY  213 (568)
Q Consensus       135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~  213 (568)
                      +++.+|.+.......|. +.+|+.+.+..+ +......+|..+++|+.+++..+ +..... .+.. ..|+.+.+..+ +
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence            88887777755445555 577888887744 44445566777778888887754 332222 4555 57777777432 3


Q ss_pred             cccCCCcccCCCCCcceEeecCCccc-----cccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCC
Q 041497          214 HGSLPLDIGVNLPNLRFFIISGNNLT-----GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGT  288 (568)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (568)
                      . .++...|.++++|+.+++.++.+.     .+....|.+|++|+.+.+.+ .+..+...+|.++++|+.+.+..+ +..
T Consensus       260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            3 566666667888888888776543     35566788888888888884 466677777888888888888554 444


Q ss_pred             cCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcc
Q 041497          289 RTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI  341 (568)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l  341 (568)
                      +...      .|..| +|+.+++.+|....+....+.+.+..+..+.+..+.+
T Consensus       337 I~~~------aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFS------AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTT------SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHH------hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            4433      36677 7888888888777766666666655577777766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.7e-15  Score=130.66  Aligned_cols=135  Identities=19%  Similarity=0.193  Sum_probs=104.9

Q ss_pred             CCceEEEcccCCCC-CCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-cccccee
Q 041497          419 KNLILLTTRKNKPS-GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYL  496 (568)
Q Consensus       419 ~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L  496 (568)
                      ++|+.|++++|.+. +.++..+..+..+ +.|++++|.+++.  ..+..+++|++|++++|++++.+|..+. +++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45566666666554 4455555555555 6777777777654  5778899999999999999866777777 9999999


Q ss_pred             ecccccccccC-CccCcCCCCCCEEeCCCCccccCcC---ccccccccCCeeecccCcccccCC
Q 041497          497 CMQDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLSYNHFESKSL  556 (568)
Q Consensus       497 ~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~  556 (568)
                      ++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|++.....
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999998543 2788899999999999999997666   578899999999999998876544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=9.6e-14  Score=138.65  Aligned_cols=226  Identities=12%  Similarity=0.013  Sum_probs=121.2

Q ss_pred             cccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchh
Q 041497           46 IGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAE  125 (568)
Q Consensus        46 i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  125 (568)
                      +......+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ +......+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            33344456777778888877643 55455567777788888887654 44455666777777777766643 33344555


Q ss_pred             hcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCcc
Q 041497          126 IGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE  204 (568)
Q Consensus       126 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~  204 (568)
                      |.++..++.......  ......+|.++++|+.+.+.++.. .....++..+.+|+.+++..+ +..... .+..+..|+
T Consensus       136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             eecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            666554433332222  223345677777777777765432 233445666677777766554 221112 555555555


Q ss_pred             EEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCC
Q 041497          205 YIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK  283 (568)
Q Consensus       205 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~  283 (568)
                      .+.+..+...  +....+ ....|+.+.+... +.......+..+..++.+.+..+... +....|..+..++.+....
T Consensus       212 ~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          212 NMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             BCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             eeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            5554433221  111111 3345555555432 22233445555566666665554332 4444455555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1.3e-13  Score=136.93  Aligned_cols=253  Identities=11%  Similarity=0.070  Sum_probs=199.7

Q ss_pred             cccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchh
Q 041497           46 IGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAE  125 (568)
Q Consensus        46 i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  125 (568)
                      +......+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .++.+...+|.+|++|+.+++.+|++.......
T Consensus       124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a  199 (401)
T 4fdw_A          124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST  199 (401)
T ss_dssp             CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred             cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence            444455677775 7999999877 665666678774 799999986 666577788999999999999999998666666


Q ss_pred             hcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCcc
Q 041497          126 IGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE  204 (568)
Q Consensus       126 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~  204 (568)
                      |. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +......+|.. .+|+.+.+.. .+..... .+..+++|+
T Consensus       200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~  274 (401)
T 4fdw_A          200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELA  274 (401)
T ss_dssp             TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCC
T ss_pred             Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCC
Confidence            66 689999999854 66677788999999999999875 44344455666 7899999954 3444444 899999999


Q ss_pred             EEEeeccccc----ccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEE
Q 041497          205 YIFIHRNIYH----GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN  280 (568)
Q Consensus       205 ~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~  280 (568)
                      .+.+..+...    ..++...|.++++|+.+++.+ .+..+...+|.+|++|+.+.+..+ +..+...+|..+ +|+.+.
T Consensus       275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~  351 (401)
T 4fdw_A          275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK  351 (401)
T ss_dssp             EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred             EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence            9999887653    247778888999999999984 477778889999999999999766 666788889999 999999


Q ss_pred             CCCCCCCCcCCCCchhhhcccCCC-cccEEEeccCcc
Q 041497          281 LGKNNLGTRTANDLDFITLLTNCT-KLEVLVLDSNRF  316 (568)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~  316 (568)
                      +.++........      .+..++ .++.+.+..+.+
T Consensus       352 l~~n~~~~l~~~------~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          352 VEGTTPPQVFEK------VWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECCSSCCBCCCS------SCCCSCTTCCEEEECGGGH
T ss_pred             EcCCCCcccccc------cccCCCCCccEEEeCHHHH
Confidence            999988776654      355664 788998877653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.5e-14  Score=128.68  Aligned_cols=129  Identities=19%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCc-ccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC
Q 041497           37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPH-EVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  115 (568)
Q Consensus        37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  115 (568)
                      +.++++++.+...+. .+.  .++++|++++|.+....+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            355666666654332 222  2677788888777654443 367777777777777777766677777777777777777


Q ss_pred             CcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC
Q 041497          116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG  168 (568)
Q Consensus       116 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  168 (568)
                      |++++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            77776666667777777777777777776666677777777777777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.9e-15  Score=126.17  Aligned_cols=127  Identities=16%  Similarity=0.180  Sum_probs=81.4

Q ss_pred             CCCceeeccCCccc-ccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497           58 SFLRSINLANNSFR-AEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN  136 (568)
Q Consensus        58 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  136 (568)
                      +++++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56666777776665 45666666677777777777766643  5566667777777777776655666666667777777


Q ss_pred             cccccCCCC-CCcccCCCCCCCeEEeccCCCCCCCC---ccccccccCcEEeec
Q 041497          137 IAENHLRGQ-LPASIGNLSALQEINVNGNRLGGRIP---STRSHVRNLISFNVG  186 (568)
Q Consensus       137 l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  186 (568)
                      +++|.+.+. .+..++.+++|++|++++|.+.+..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777766642 22556666777777777776654333   356666677766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=4.1e-15  Score=126.67  Aligned_cols=129  Identities=19%  Similarity=0.234  Sum_probs=113.4

Q ss_pred             CCeEEEEeccCCccc-cccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497           33 HQRVIGLDLRHQSIG-GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF  111 (568)
Q Consensus        33 ~~~i~~L~l~~~~i~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  111 (568)
                      .++++.|++++|.+. +..+..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            377999999999998 66777889999999999999999865  778999999999999999997688888889999999


Q ss_pred             eccCCccccc-CchhhcCcCcCceeecccccCCCCCC---cccCCCCCCCeEEecc
Q 041497          112 EASNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLP---ASIGNLSALQEINVNG  163 (568)
Q Consensus       112 ~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~  163 (568)
                      ++++|++++. .+..+..+++|++|++++|.+.+..+   ..+..+++|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999853 34788999999999999999986554   4788999999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=9.8e-15  Score=127.04  Aligned_cols=116  Identities=20%  Similarity=0.214  Sum_probs=93.5

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.+++++|.++. +|..+  .++|++|++++|.+++..|..+. +++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            567888888874 45444  37889999999998877677776 889999999999998777777888999999999999


Q ss_pred             ccccCcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497          526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI  565 (568)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  565 (568)
                      .+++..+..|..+++|+.|++++|++.|.|+....+..|+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l  128 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI  128 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence            9988777788889999999999999999988554444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=8.2e-14  Score=123.87  Aligned_cols=126  Identities=21%  Similarity=0.273  Sum_probs=81.3

Q ss_pred             EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497           38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  117 (568)
Q Consensus        38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  117 (568)
                      .++++++.+...+. .+  .++|++|++++|.++ .+|..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus        14 ~l~~~~~~l~~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLKVLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCSSCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCcCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            45566666654332 22  246777777777766 556667777777777777777776666667777777777777777


Q ss_pred             ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCC
Q 041497          118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLG  167 (568)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  167 (568)
                      ++...+..|..+++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            76655566666777777777777666544445666666666666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.52  E-value=5.7e-13  Score=133.01  Aligned_cols=101  Identities=10%  Similarity=0.031  Sum_probs=66.1

Q ss_pred             hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccccccc
Q 041497          462 AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF  540 (568)
Q Consensus       462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  540 (568)
                      ..|..+.+|+.+.+..+ ++.....+|. |.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.+....|.++++
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            35667777777777655 4434455565 777888877644 66566677777788888888766 66566677788888


Q ss_pred             CCeeecccCcccccCCCCccccccccC
Q 041497          541 LSFLNLSYNHFESKSLFVWPFVDEIKG  567 (568)
Q Consensus       541 L~~L~l~~n~i~~~~~~~~~~~~~~~~  567 (568)
                      |+.+++..+-  ......+..++.||.
T Consensus       368 L~~i~lp~~~--~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          368 LKKVELPKRL--EQYRYDFEDTTKFKW  392 (394)
T ss_dssp             CCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred             CCEEEECCCC--EEhhheecCCCCCcE
Confidence            8888776541  122344555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=3.7e-15  Score=159.90  Aligned_cols=192  Identities=18%  Similarity=0.160  Sum_probs=117.8

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeC-----CCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTL-----TNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF  132 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-----~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  132 (568)
                      ++++.|++.++.+.. .+..+.....|..+.+     ..|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            568889998887764 4444433334443333     334444 56778899999999999999998 677778899999


Q ss_pred             ceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccc
Q 041497          133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNI  212 (568)
Q Consensus       133 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  212 (568)
                      ++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|+.|++++|.+......+..+++|+.|++++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            99999999999 78899999999999999999998 78999999999999999999998665589999999999999999


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCC
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN  260 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n  260 (568)
                      +.+.++..+.........+++++|.+.+..|.      .|+.|+++.|
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            98766655532112233477888888765554      4566667766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=2.7e-14  Score=124.60  Aligned_cols=115  Identities=21%  Similarity=0.265  Sum_probs=87.6

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.+++++++++ .+|..+.  ++|++|++++|++++..|..+. +++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            55677777776 4454443  7888888888888866677776 888888888888888666666788888888888888


Q ss_pred             ccccCcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497          526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE  564 (568)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~  564 (568)
                      .++...+..|..+++|+.|++++|++.|.|+....+..|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~  130 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW  130 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence            888776667888888888888888888888754333333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=2.3e-13  Score=119.50  Aligned_cols=111  Identities=19%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            67889999998888666667788889999999999888666666788889999999988888666666788888888888


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCC
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGG  168 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  168 (568)
                      ++|.+.+..+..+..+++|++|++++|++..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            8888886555556778888888888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4.6e-14  Score=123.80  Aligned_cols=134  Identities=19%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             ccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-cccc
Q 041497          415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSL  493 (568)
Q Consensus       415 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L  493 (568)
                      +.++.+|+.|++++|.+... + .+....+.++.|++++|.+++.  ..+..+++|++|++++|++++..+..+. +++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            44456666666666666532 2 3444442237778888877754  5788899999999999999855445545 9999


Q ss_pred             ceeecccccccccCCc--cCcCCCCCCEEeCCCCccccCcCc----cccccccCCeeecccCccccc
Q 041497          494 EYLCMQDNSFTGSIPS--TLSSLKSITELDLSRNNLSGHIPQ----YLENLSFLSFLNLSYNHFESK  554 (568)
Q Consensus       494 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~i~~~  554 (568)
                      +.|++++|.++ .+|.  .+..+++|+.|++++|+++.. |.    .+..+++|+.|++++|++...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            99999999997 4454  788999999999999999854 54    488999999999999987654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=9.6e-14  Score=121.73  Aligned_cols=132  Identities=14%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF  132 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  132 (568)
                      +..+++|++|++++|.+.. ++. +..+. +|++|++++|.+++.  ..+..+++|++|++++|++....+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4455566666666666552 333 33333 666666666666532  445566666666666666654333334566666


Q ss_pred             ceeecccccCCCCCCc--ccCCCCCCCeEEeccCCCCCCCCcc----ccccccCcEEeecccccc
Q 041497          133 QLLNIAENHLRGQLPA--SIGNLSALQEINVNGNRLGGRIPST----RSHVRNLISFNVGLNQFS  191 (568)
Q Consensus       133 ~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~  191 (568)
                      ++|++++|.+. .++.  .+..+++|++|++++|++. ..|..    +..+++|+.|+++.+...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            66666666664 3333  4556666666666666665 33442    555666666666655443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2.4e-15  Score=134.84  Aligned_cols=154  Identities=22%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             cCcccccccccccccccCCCCC------CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497          392 GNLTMLTQRLLEVNDLLGNIPP------SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG  465 (568)
Q Consensus       392 ~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~  465 (568)
                      .....++.++++.+.+++..+.      .+..+++|++|++++|.+.+ ++ .+..+..+ +.|++++|.++ .+|..+.
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhh
Confidence            3345555556666655555444      56667777777777777665 44 66666666 77888888877 5566677


Q ss_pred             cCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCC-ccCcCCCCCCEEeCCCCccccCcCc----------
Q 041497          466 KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIPQ----------  533 (568)
Q Consensus       466 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------  533 (568)
                      .+++|++|++++|++++ +| .+. +++|+.|++++|.++...+ ..+..+++|+.|++++|++.+..|.          
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            77888888888888874 45 344 8889999999998885332 4678889999999999988765544          


Q ss_pred             cccccccCCeeecccCcccc
Q 041497          534 YLENLSFLSFLNLSYNHFES  553 (568)
Q Consensus       534 ~~~~l~~L~~L~l~~n~i~~  553 (568)
                      .+..+++|+.|+  +++++.
T Consensus       169 ~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          169 VVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHCSSCSEEC--CGGGTT
T ss_pred             HHHhCCCcEEEC--CcccCH
Confidence            378888999887  777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=2.2e-15  Score=135.09  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=55.3

Q ss_pred             ccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCC
Q 041497           77 EVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL  156 (568)
Q Consensus        77 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  156 (568)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|++. .+|..+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            44555555555555555542 33 4555555555555555554 344444444555555555555543 22 34455555


Q ss_pred             CeEEeccCCCCCCCC-ccccccccCcEEeecccccccC
Q 041497          157 QEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGM  193 (568)
Q Consensus       157 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  193 (568)
                      ++|++++|.+....+ ..+..+++|+.|++++|.+.+.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            555555555542111 2344555555555555555433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=5.7e-11  Score=118.46  Aligned_cols=321  Identities=10%  Similarity=0.090  Sum_probs=182.6

Q ss_pred             ccccCCcccCCC-CCceeeccCCcccccCCcccCCCCCCcEEeCCCC---cCCCCCCcccccCCCCcEEeccCCcccccC
Q 041497           47 GGFLSPFVGNLS-FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNN---YFSGKIPTNLSRCSNLVKFEASNNKLAGES  122 (568)
Q Consensus        47 ~~~~~~~~~~~~-~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n---~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  122 (568)
                      ......+|.++. .|+.+.+..+ ++.....+|.++.+|+.+.+..+   .++.+...+|.+|.+|+.+.+..+ +....
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            333445677774 5888888754 55566778889999999988765   355566677888899988888754 44455


Q ss_pred             chhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCC
Q 041497          123 PAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISS  202 (568)
Q Consensus       123 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~  202 (568)
                      ..+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +......++ ....|+.+.+......-....+..+..
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~  206 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFA  206 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred             hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccccccchhhhccc
Confidence            677888899999888753 33355567888888888888764 222223333 345688888765544333336666677


Q ss_pred             ccEEEeecccccccCCCccc-------------CCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCC
Q 041497          203 LEYIFIHRNIYHGSLPLDIG-------------VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN  269 (568)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~  269 (568)
                      ++.......... .....++             .....+..+.+.. .+......+|..+..|+.+.+..+... +...+
T Consensus       207 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a  283 (394)
T 4gt6_A          207 LSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGA  283 (394)
T ss_dssp             CCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred             cceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcc
Confidence            776655433221 1111111             0111223333322 233344556677777777777655432 55566


Q ss_pred             ccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhh
Q 041497          270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI  349 (568)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~  349 (568)
                      |..++.|+.+.+.. .+..+...      .|..|.+|+.+.+..+ ++.+....|.+... |+.+.+..+ ++.+...+|
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~------aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~-L~~i~ip~s-v~~I~~~aF  353 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPES------VFAGCISLKSIDIPEG-ITQILDDAFAGCEQ-LERIAIPSS-VTKIPESAF  353 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTT------TTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEEECTT-CCBCCGGGG
T ss_pred             cccccccccccCCC-cccccCce------eecCCCCcCEEEeCCc-ccEehHhHhhCCCC-CCEEEECcc-cCEEhHhHh
Confidence            66777777777753 33333332      3566777777777543 44444445555433 666666433 444444555


Q ss_pred             hhhccccccCccccccchhhccCCCeeECccCccccccCccccCccccccccccccc
Q 041497          350 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND  406 (568)
Q Consensus       350 ~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  406 (568)
                      ..|.                  +|+.+.+.++....   ..+..+..|+.+.+..+.
T Consensus       354 ~~C~------------------~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          354 SNCT------------------ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTCT------------------TCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             hCCC------------------CCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            5554                  45555555543221   245556666666665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=7.7e-12  Score=108.60  Aligned_cols=86  Identities=22%  Similarity=0.286  Sum_probs=46.4

Q ss_pred             CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497           82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV  161 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  161 (568)
                      ++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            45555555555555444555555555555555555555443444455555555555555555444444555566666666


Q ss_pred             ccCCCC
Q 041497          162 NGNRLG  167 (568)
Q Consensus       162 ~~~~~~  167 (568)
                      ++|++.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.32  E-value=1.3e-10  Score=115.83  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=51.7

Q ss_pred             cCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccc
Q 041497          459 HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN  537 (568)
Q Consensus       459 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  537 (568)
                      ....+|..+.+|+.+++..+ ++.....+|. |.+|+.+.+..+ ++.+...+|.++.+|+.+++.++....   ..+..
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~  376 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIST  376 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC
T ss_pred             cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhc
Confidence            33456777778888887654 4434455665 778888887544 665666777778888888887765431   34566


Q ss_pred             cccCCeeecccCcc
Q 041497          538 LSFLSFLNLSYNHF  551 (568)
Q Consensus       538 l~~L~~L~l~~n~i  551 (568)
                      +..|+.+.+..+.+
T Consensus       377 ~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          377 DSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCCC----------
T ss_pred             cCCCCEEEeCCCCE
Confidence            67777777665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.5e-11  Score=107.21  Aligned_cols=86  Identities=24%  Similarity=0.302  Sum_probs=42.9

Q ss_pred             CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497           82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV  161 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  161 (568)
                      ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            44455555555554444444455555555555555554333333445555555555555555333333555555555555


Q ss_pred             ccCCCC
Q 041497          162 NGNRLG  167 (568)
Q Consensus       162 ~~~~~~  167 (568)
                      ++|++.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1.9e-13  Score=134.39  Aligned_cols=188  Identities=16%  Similarity=0.062  Sum_probs=114.3

Q ss_pred             chhhccCCCeeECccCccccccCccccC-----cccccccccccccccCCCCCCc-cCCCCceEEEcccCCCCCCCCCch
Q 041497          366 AVTILKSLQMLFLHENVLQGTIPSFLGN-----LTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTMPRQL  439 (568)
Q Consensus       366 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~  439 (568)
                      .....+.|+.+++++|.++......+..     .+.|+.|++++|.++......+ ..+++|+.|++++|.+.+.....+
T Consensus        67 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           67 SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             HHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            3444789999999999987654433332     3688888888888765433333 235678888888887765444444


Q ss_pred             hHHh----hhceEEEccCCcccccC----chhhhcCCCCcEEecCCCcccccC----CCccc-ccccceeeccccccccc
Q 041497          440 PRII----TLSVLLNLSDNLLSGHF----PAEVGKLKNLVSLDISSNMFSGEI----PTTLG-CTSLEYLCMQDNSFTGS  506 (568)
Q Consensus       440 ~~~~----~l~~~l~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~~~~----~~~~~-~~~L~~L~Ls~n~l~~~  506 (568)
                      ....    ..++.|+|++|.++...    +..+..+++|++|+|++|.+++..    +..+. +++|+.|+|++|.+++.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            3322    22377888888776422    234466777888888888776432    22233 56788888888877653


Q ss_pred             C----CccCcCCCCCCEEeCCCCccccCcCcccccccc-----CCeee--cccCcccc
Q 041497          507 I----PSTLSSLKSITELDLSRNNLSGHIPQYLENLSF-----LSFLN--LSYNHFES  553 (568)
Q Consensus       507 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----L~~L~--l~~n~i~~  553 (568)
                      .    +..+..++.|++||+++|.++......+..+..     |+.+.  +.++.+..
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            2    233445677888888888777654444443321     55555  55555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=7.9e-12  Score=122.57  Aligned_cols=108  Identities=20%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             EEEccCC-cccccCchhhhcCCCCcEEecCC-CcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCC
Q 041497          448 LLNLSDN-LLSGHFPAEVGKLKNLVSLDISS-NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR  524 (568)
Q Consensus       448 ~l~Ls~n-~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  524 (568)
                      .++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|. +++|+.|+|++|++++..+..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3577776 777 4566 78888888888886 888766666676 88888888888888877777888888888888888


Q ss_pred             CccccCcCccccccccCCeeecccCcccccCCCC
Q 041497          525 NNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       525 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      |.+++..+..|..++ |+.|++.+|++.|.|+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence            888877666666665 888888888888888754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=2.4e-13  Score=133.75  Aligned_cols=134  Identities=16%  Similarity=0.152  Sum_probs=56.6

Q ss_pred             CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh-----cCCCCcEEecCCCcccccCC----Cccc
Q 041497          419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG-----KLKNLVSLDISSNMFSGEIP----TTLG  489 (568)
Q Consensus       419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~-----~l~~L~~L~ls~n~l~~~~~----~~~~  489 (568)
                      ++|++|++++|.+.+.....+......++.|+|++|.++......+.     ..++|++|+|++|.+++...    ..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            45555555555543322222222211225555555555432222221     23455555555555442111    1112


Q ss_pred             -ccccceeecccccccccC----CccCcCCCCCCEEeCCCCccccCc----CccccccccCCeeecccCccc
Q 041497          490 -CTSLEYLCMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       490 -~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~  552 (568)
                       +++|++|+|++|.+++..    +..+..++.|+.|++++|.++...    +..+...++|++|++++|+|+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence             445555555555544321    233344445555555555554321    122233455555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=4.6e-09  Score=104.14  Aligned_cols=146  Identities=12%  Similarity=0.042  Sum_probs=81.9

Q ss_pred             ccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCC
Q 041497          389 SFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK  468 (568)
Q Consensus       389 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~  468 (568)
                      ..+..+..|+.+.+..+ +......++.+|..|+.+.+..+ +.......+..+..+ +.+++..+ +......+|..++
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CEEEECCC-CSEECTTTTTTCT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cccccccc-ceecccccccccc
Confidence            34555555665555433 22344455666666666666443 222222233333333 44444332 3323345677777


Q ss_pred             CCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccccccc
Q 041497          469 NLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF  540 (568)
Q Consensus       469 ~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  540 (568)
                      +|+.+.+.++.++......|. |.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+....|.+++.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            777777777766645555665 777777777544 55566667777777777777654 55455556666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=3.1e-08  Score=98.13  Aligned_cols=288  Identities=10%  Similarity=0.078  Sum_probs=144.5

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      +....+|+.+.+... ++.....+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|..+ +|+
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~  116 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD  116 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence            334455555555432 33334445556666666666432 333444455554 4555554432 232333334332 555


Q ss_pred             eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC-------------CCCCCCC
Q 041497          134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM-------------FPPINNI  200 (568)
Q Consensus       134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------~~~l~~~  200 (568)
                      .+.+..+ +.......|.++ .|+.+.+..+ +......++..+..++.+.+........             ...+...
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            5555442 211222333332 3343333322 1112223334444444444432211100             0022233


Q ss_pred             CCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEE
Q 041497          201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN  280 (568)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~  280 (568)
                      ..+..+.+.....  .+....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|..+.+|+.+.
T Consensus       194 ~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          194 KTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             CCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            3344443332211  222333335566776666543 33345556677777777777665 4445566677777777777


Q ss_pred             CCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCc
Q 041497          281 LGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV  360 (568)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l  360 (568)
                      +..+ +..+...      .+..|++|+.+.+.++.++.+....|.+... |+.+.+.++ ++.+...+|..|.+|+.+.+
T Consensus       270 l~~~-i~~i~~~------aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~-L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          270 FYAK-VKTVPYL------LCSGCSNLTKVVMDNSAIETLEPRVFMDCVK-LSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             ECCC-CSEECTT------TTTTCTTCCEEEECCTTCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccc-ceecccc------ccccccccccccccccccceehhhhhcCCCC-CCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            7543 3333322      3667777777777776666666666666544 777777654 55556678888888888877


Q ss_pred             cc
Q 041497          361 EF  362 (568)
Q Consensus       361 ~~  362 (568)
                      ..
T Consensus       341 p~  342 (379)
T 4h09_A          341 PK  342 (379)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=1.1e-09  Score=107.32  Aligned_cols=96  Identities=19%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             ccccccCCcccCCCCCceeeccC-CcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCc
Q 041497           45 SIGGFLSPFVGNLSFLRSINLAN-NSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESP  123 (568)
Q Consensus        45 ~i~~~~~~~~~~~~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  123 (568)
                      .+... |. +..+++|++|++++ |.+....+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++....+
T Consensus        20 ~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            45543 33 66777777777774 77765555667777777777777777776666666777777777777777664433


Q ss_pred             hhhcCcCcCceeecccccCC
Q 041497          124 AEIGNLLKFQLLNIAENHLR  143 (568)
Q Consensus       124 ~~~~~l~~L~~L~l~~~~l~  143 (568)
                      ..+..+. |++|++.+|.+.
T Consensus        98 ~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           98 KTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TTTCSCC-CCEEECCSSCCC
T ss_pred             HHcccCC-ceEEEeeCCCcc
Confidence            3444333 666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=4.3e-09  Score=102.41  Aligned_cols=59  Identities=15%  Similarity=0.139  Sum_probs=27.2

Q ss_pred             ccCCCeeECccCccc---------cccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCC
Q 041497          370 LKSLQMLFLHENVLQ---------GTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP  431 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  431 (568)
                      +++|+.|.+......         +.+...+..+|.|+.|.++++.-. ..+. +. +++|+.|++..|.+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l  205 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGL  205 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBC
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCC
Confidence            567777766543221         011122344566666666554211 1111 22 55566666655544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=1.1e-08  Score=99.69  Aligned_cols=65  Identities=17%  Similarity=0.349  Sum_probs=35.8

Q ss_pred             CCCCcceEeecCCccccccCccC---CCCCCCCeEecCCCccccccc----CCccCCCCCcEEECCCCCCCC
Q 041497          224 NLPNLRFFIISGNNLTGSLQDSL---SNATNLQKLDINRNLFSGKVS----INFGGLQNLSWLNLGKNNLGT  288 (568)
Q Consensus       224 ~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~  288 (568)
                      .+|+|+.|++.+|.+.+..+..+   ..+++|+.|+|+.|.+.+...    ..+..+++|+.|+++.|.+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            35666666666665543221111   235667777777776654322    222445677777777766554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=3.5e-08  Score=86.52  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=67.1

Q ss_pred             hhhhcCCCCcEEecCCCcccccCCCcc----c-ccccceeeccccccccc----CCccCcCCCCCCEEeC--CCCccccC
Q 041497          462 AEVGKLKNLVSLDISSNMFSGEIPTTL----G-CTSLEYLCMQDNSFTGS----IPSTLSSLKSITELDL--SRNNLSGH  530 (568)
Q Consensus       462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~----~-~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~  530 (568)
                      ..+...++|++|+|++|.+.+.....+    . .++|++|+|++|.+++.    +...+...+.|++|++  ++|.+...
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            345667888888888888864333222    2 57888899998888753    3456677788999999  88888754


Q ss_pred             ----cCccccccccCCeeecccCccccc
Q 041497          531 ----IPQYLENLSFLSFLNLSYNHFESK  554 (568)
Q Consensus       531 ----~~~~~~~l~~L~~L~l~~n~i~~~  554 (568)
                          +.+.+...++|++|++++|.|...
T Consensus       139 g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          139 VEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence                334555668899999999987643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=1.5e-08  Score=88.87  Aligned_cols=92  Identities=13%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             CcccCCCCCceeeccCC-ccccc----CCcccCCCCCCcEEeCCCCcCCCC----CCcccccCCCCcEEeccCCccccc-
Q 041497           52 PFVGNLSFLRSINLANN-SFRAE----IPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAGE-  121 (568)
Q Consensus        52 ~~~~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~-  121 (568)
                      ..+...++|++|++++| .+...    +...+...++|++|++++|.++..    +...+...+.|++|++++|.+... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34556666777777766 55432    334455566677777776666522    122334445666666666665432 


Q ss_pred             ---CchhhcCcCcCceeec--ccccCC
Q 041497          122 ---SPAEIGNLLKFQLLNI--AENHLR  143 (568)
Q Consensus       122 ---~~~~~~~l~~L~~L~l--~~~~l~  143 (568)
                         +...+...+.|++|++  ++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence               2333444455555555  445443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=3.6e-08  Score=90.80  Aligned_cols=81  Identities=20%  Similarity=0.394  Sum_probs=48.3

Q ss_pred             ccCCCCcEEeccCCcccc--cCchhhcCcCcCceeecccccCCCCCCcccCCCC--CCCeEEeccCCCCCCCCc------
Q 041497          103 SRCSNLVKFEASNNKLAG--ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLS--ALQEINVNGNRLGGRIPS------  172 (568)
Q Consensus       103 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~------  172 (568)
                      .++++|+.|+|++|++.+  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            345666666666666654  2334455666677777776666543  2233333  677777777777654442      


Q ss_pred             -cccccccCcEEee
Q 041497          173 -TRSHVRNLISFNV  185 (568)
Q Consensus       173 -~l~~l~~L~~L~l  185 (568)
                       .+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             3566777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=4e-07  Score=83.80  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             hcCCCCcEEecCCCcccc--cCCCccc-ccccceeeccccccccc-CCccCcCCCCCCEEeCCCCccccCcC-------c
Q 041497          465 GKLKNLVSLDISSNMFSG--EIPTTLG-CTSLEYLCMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHIP-------Q  533 (568)
Q Consensus       465 ~~l~~L~~L~ls~n~l~~--~~~~~~~-~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-------~  533 (568)
                      ..+++|++|+|++|++++  .++..+. +++|+.|+|++|.+++. ....+..+ +|+.|++++|++.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            568899999999999885  3445555 89999999999998854 12233333 89999999999886554       3


Q ss_pred             cccccccCCeee
Q 041497          534 YLENLSFLSFLN  545 (568)
Q Consensus       534 ~~~~l~~L~~L~  545 (568)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467788888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=1.1e-07  Score=81.09  Aligned_cols=83  Identities=11%  Similarity=0.035  Sum_probs=62.4

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCc-ccccCCCccc-----ccccceeeccccc-ccccCCccCcCCCCCCE
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNM-FSGEIPTTLG-----CTSLEYLCMQDNS-FTGSIPSTLSSLKSITE  519 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~~~-----~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  519 (568)
                      +.||+++|.++......+..+++|++|+|++|. +++.....++     +++|+.|+|++|. ||+.....+..+++|++
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            888999988887666777888999999999984 6644333333     2478888888874 77766666778888888


Q ss_pred             EeCCCCc-ccc
Q 041497          520 LDLSRNN-LSG  529 (568)
Q Consensus       520 L~l~~n~-l~~  529 (568)
                      |++++|+ ++.
T Consensus       144 L~L~~c~~Itd  154 (176)
T 3e4g_A          144 LFLSDLPGVKE  154 (176)
T ss_dssp             EEEESCTTCCC
T ss_pred             EECCCCCCCCc
Confidence            8888886 553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=6e-07  Score=76.45  Aligned_cols=84  Identities=7%  Similarity=0.090  Sum_probs=46.1

Q ss_pred             CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc-ccccCchhhcCc----CcCceeeccccc-CCCCCCcccCCCCC
Q 041497           82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-LAGESPAEIGNL----LKFQLLNIAENH-LRGQLPASIGNLSA  155 (568)
Q Consensus        82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~~~-l~~~~~~~~~~l~~  155 (568)
                      .+|+.||++++.++......+..|++|++|+|++|. ++...-..+..+    ++|++|++++|. ++......+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            456666666666554444445566666666666664 332222333332    356666666664 44333334555666


Q ss_pred             CCeEEeccCC
Q 041497          156 LQEINVNGNR  165 (568)
Q Consensus       156 L~~L~l~~~~  165 (568)
                      |++|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.68  E-value=5.3e-05  Score=61.48  Aligned_cols=61  Identities=26%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             eeeccccccc-ccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCC
Q 041497          495 YLCMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLF  557 (568)
Q Consensus       495 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  557 (568)
                      .++.++++++ ..+|..+  .++|+.|+|++|.|+.+.+..|..+++|+.|+|++|++.|.|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            4455555554 1333222  12455555555555555555555555555555666655555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.49  E-value=3.7e-05  Score=66.73  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             chhhhcCCCCcEEecCCCcccccCCCccc-----ccccceeecccccccccC----CccCcCCCCCCEEeCCCCc---cc
Q 041497          461 PAEVGKLKNLVSLDISSNMFSGEIPTTLG-----CTSLEYLCMQDNSFTGSI----PSTLSSLKSITELDLSRNN---LS  528 (568)
Q Consensus       461 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~---l~  528 (568)
                      .+++..-+.|++|+|++|++.+.....++     .+.|+.|+|++|.|....    .+++.....|+.|++++|.   +.
T Consensus        63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig  142 (197)
T 1pgv_A           63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG  142 (197)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence            34566678899999999988755544443     688999999999887533    3456667789999998763   33


Q ss_pred             c----CcCccccccccCCeeecccCccc
Q 041497          529 G----HIPQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       529 ~----~~~~~~~~l~~L~~L~l~~n~i~  552 (568)
                      .    .+.+.+..-++|+.|+++.|.+.
T Consensus       143 ~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          143 NQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            2    24456667788999999887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.91  E-value=0.00041  Score=60.17  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             ccCCCCCceeeccCC-ccccc----CCcccCCCCCCcEEeCCCCcCCCC----CCcccccCCCCcEEeccCCccccc---
Q 041497           54 VGNLSFLRSINLANN-SFRAE----IPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAGE---  121 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~---  121 (568)
                      +.+-+.|++|+++++ .+.+.    +..++.....|+.|+|++|.+.+.    +.+.+...+.|++|+|++|.+...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345566777777764 55432    344556667777777777777532    223344556777777777776532   


Q ss_pred             -CchhhcCcCcCceeeccc
Q 041497          122 -SPAEIGNLLKFQLLNIAE  139 (568)
Q Consensus       122 -~~~~~~~l~~L~~L~l~~  139 (568)
                       +..++..-+.|++|++++
T Consensus       117 ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhhCCceeEEECCC
Confidence             222333444555565554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.74  E-value=0.0023  Score=51.74  Aligned_cols=57  Identities=19%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             cEEecCCCccc-ccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497          471 VSLDISSNMFS-GEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS  528 (568)
Q Consensus       471 ~~L~ls~n~l~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (568)
                      ..++.+++.++ ..+|..+ ..+|+.|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777765 3555544 366888888888888666777788888888888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	568
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 96.4 bits (238), Expect = 1e-22
 Identities = 69/293 (23%), Positives = 110/293 (37%), Gaps = 12/293 (4%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQ--WTGVTC--GHRHQRVIGLDLRHQSIGGF--LSPFVG 55
           K  L +P    SSW  + + C   W GV C    +  RV  LDL   ++     +   + 
Sbjct: 15  KKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 56  NLSFLRSINLANN-SFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
           NL +L  + +    +    IP  +  L +L  L +T+   SG IP  LS+   LV  + S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE-INVNGNRLGGRIPST 173
            N L+G  P  I +L     +    N + G +P S G+ S L   + ++ NRL       
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIP 191

Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
            +     ++F             +   S      IH      +  L       NL    +
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
             N + G+L   L+    L  L+++ N   G++    G LQ         N  
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 10/259 (3%)

Query: 301 TNCTKLEVLVLDSNRFGAV--LPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL 358
           T   ++  L L          +P SLANL         G N + G IP  IA L  L+ L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 359 GVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
            +    ++  I      +K+L  L    N L GT+P  + +L  L     + N + G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
            S G+   L    T                + L+ +   S N+L G      G  KN   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL-SRNMLEGDASVLFGSDKNTQK 225

Query: 473 LDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532
           + ++ N  + ++       +L  L +++N   G++P  L+ LK +  L++S NNL G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 533 QYLENLSFLSFLNLSYNHF 551
           Q   NL        + N  
Sbjct: 286 Q-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 12/271 (4%)

Query: 244 DSLSNATNLQKLDINRNLFSGKVSI--NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT 301
           D+ +    +  LD++         I  +   L  L++L +G  N      N +  I    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPIPPAI 97

Query: 302 NCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVE 361
                   +  ++   +       +   T+  + F  N +SG +P  I++L NL  +  +
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 362 FNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNL 421
            N+++  I  S          +  +     G +      L      L             
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 422 ILL----TTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISS 477
                       K S         +      L+L +N + G  P  + +LK L SL++S 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 478 NMFSGEIPTTLGCTSLEYLCMQDNSFTGSIP 508
           N   GEIP        +     +N      P
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 60/230 (26%), Positives = 89/230 (38%), Gaps = 10/230 (4%)

Query: 332 TGIAFGNNQISGF--IPDGIANLVNLNALGVEFNQLAVTILKS-------LQMLFLHENV 382
             +      +     IP  +ANL  LN L +      V  +         L  L++    
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 383 LQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI 442
           + G IP FL  +  L       N L G +PPSI +  NL+ +T   N+ SG +P      
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 443 ITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNS 502
             L   + +S N L+G  P     L      D+S NM  G+     G            +
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 503 FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552
                   +   K++  LDL  N + G +PQ L  L FL  LN+S+N+  
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 15  WNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI 74
           + +          +      +        ++   F    VG    L  ++L NN     +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260

Query: 75  PHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESP 123
           P  +  L  L +L ++ N   G+IP              +NNK    SP
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 1/205 (0%)

Query: 15  WNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI 74
              +             + + ++ LD  + ++ G L P + +L  L  I    N     I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 75  PHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL 134
           P   G+  +L      +               NL   + S N L G++    G+    Q 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           +++A+N L   L     +   L  +++  NR+ G +P   + ++ L S NV  N   G  
Sbjct: 226 IHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 195 PPINNISSLEYIFIHRNIYHGSLPL 219
           P   N+   +      N      PL
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 3e-15
 Identities = 75/336 (22%), Positives = 117/336 (34%), Gaps = 26/336 (7%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
            L NL     S N LT      L N T L  + +N N  +    +          L   +
Sbjct: 64  YLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS---------LANLSTTMTGI 334
                   N  +   L  +   +  +   S                   LANL+T     
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 335 AFGNNQISGFIPDGIANLVNLNALGVEFNQL-AVTILKSLQMLFLHENVLQGTIPSFLGN 393
              N      +   + NL +L A   + + +  + IL +L  L L+ N L+      L +
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLAS 239

Query: 394 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 453
           LT LT   L  N +    P  +     L  L     K        +  +  L+ L NL  
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALTNLEL 292

Query: 454 NLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSS 513
           N       + +  LKNL  L +  N  S   P +   T L+ L   +N  +    S+L++
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVS-SLTKLQRLFFANNKVSD--VSSLAN 349

Query: 514 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549
           L +I  L    N +S   P  L NL+ ++ L L+  
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 76/421 (18%), Positives = 138/421 (32%), Gaps = 60/421 (14%)

Query: 106 SNLVKFEASNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGN 164
           +  +K       +    S  ++  +   Q   +    + G     +  L+ L +IN + N
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN 76

Query: 165 RLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVN 224
           +L    P     ++NL    V +   +     I  +++L  +       +    +D   N
Sbjct: 77  QLTDITP-----LKNLTKL-VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
           L NL    +S N ++     S   +                              NL   
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-------------DLKPLANLTTL 177

Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
                ++N +  I++L   T LE L+  +N+   + P     + T +  ++   NQ+   
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKDI 234

Query: 345 IPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV 404
                                 +  L +L  L L  N +    P  L  LT LT+  L  
Sbjct: 235 GT--------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV 464
           N +    P        L  LT  +   +          +     L L  N +S   P  V
Sbjct: 273 NQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--V 325

Query: 465 GKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524
             L  L  L  ++N  S  + +    T++ +L    N  +   P  L++L  IT+L L+ 
Sbjct: 326 SSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 525 N 525
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 69/388 (17%), Positives = 123/388 (31%), Gaps = 38/388 (9%)

Query: 56  NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115
            L+      L   +    +     +L ++  L              +   +NL +   SN
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS 175
           N+L   +P  + NL K   + +  N +    P +         +  N       + +  +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 176 HVRNLISFN-------------VGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIG 222
             R  +S N             +    F      +  +++L  +       +    + + 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 223 VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLG 282
             L NL   I + N ++      L   TNL +L +N N            L NL+ L+L 
Sbjct: 194 AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS 342
            N +          +  L+  TKL  L L +N+   + P +   L+         N    
Sbjct: 250 NNQISN--------LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED 299

Query: 343 GFIPDGIANLVNLNALGVEFNQL-AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRL 401
                 + NL  L       + +  V+ L  LQ LF   N +     S L NLT +    
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 402 LEVNDLLGNIPPSIGNCKNLILLTTRKN 429
              N +    P  + N   +  L     
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 28/170 (16%)

Query: 22  CQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNL 81
            Q + +T       +  L L    +       + +L+ L  ++LANN      P  +  L
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 262

Query: 82  FRLQNLTLTNNYFSGKIP--------------------TNLSRCSNLVKFEASNNKLAGE 121
            +L  L L  N  S   P                    + +S   NL       N ++  
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 122 SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP 171
           SP  + +L K Q L  A N +     +S+ NL+ +  ++   N++    P
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 8e-07
 Identities = 71/363 (19%), Positives = 123/363 (33%), Gaps = 48/363 (13%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           L      I       V  L+ L  IN +NN      P  + NL +L ++ + NN  +   
Sbjct: 49  LQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 104

Query: 99  PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN---------------IAENHLR 143
           P         +    +                     N                     +
Sbjct: 105 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 164

Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 203
                 + NL+ L+ ++++ N+      S  + + NL S     NQ S +  P+  +++L
Sbjct: 165 VTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIATNNQISDI-TPLGILTNL 221

Query: 204 EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263
           + + ++ N       L    +L NL    ++ N ++      LS  T L +L +  N  S
Sbjct: 222 DELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS 276

Query: 264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
                            L          N L+ I+ ++N   L  L L  N    + P S
Sbjct: 277 N----------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 326

Query: 324 -LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFL 378
            L  L      + F NN++S      +ANL N+N L    NQ++       L  +  L L
Sbjct: 327 SLTKLQR----LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGL 380

Query: 379 HEN 381
           ++ 
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 63/345 (18%), Positives = 108/345 (31%), Gaps = 58/345 (16%)

Query: 247 SNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKL 306
           +      K  + +   +  VS     L  ++ L   +  +       +D +  L N   L
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-----KSIDGVEYLNN---L 68

Query: 307 EVLVLDSNRFGAVLPFS-LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ- 364
             +   +N+   + P   L  L   +       +         +  L   N    + +  
Sbjct: 69  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 365 ----------------LAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL 408
                             ++ L  L  L       Q T    L NLT L +  +  N   
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-- 186

Query: 409 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK 468
            +    +    NL  L    N+ S   P  +   +     L+L+ N L       +  L 
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLT 241

Query: 469 NLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSS--------------- 513
           NL  LD+++N  S   P + G T L  L +  N  +   P    +               
Sbjct: 242 NLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 514 -----LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553
                LK++T L L  NN+S   P  + +L+ L  L  + N    
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 30/335 (8%)

Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLG 282
            L      ++   N+T ++  S ++   +  L  +R    G  SI     L NL+ +N  
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFS 74

Query: 283 KNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS 342
            N L          IT L N TKL  +++++N+   + P +     T +T        I 
Sbjct: 75  NNQLTD--------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 343 GFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLL 402
                   N + L++  +        +    Q+ F ++     T    L NLT L +  +
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV----TDLKPLANLTTLERLDI 182

Query: 403 EVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPA 462
             N    +    +    NL  L    N+ S   P  +   +     L+L+ N L      
Sbjct: 183 SSNK--VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE---LSLNGNQLKD--IG 235

Query: 463 EVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDL 522
            +  L NL  LD+++N  S   P + G T L  L +  N  +   P  L+ L ++T L+L
Sbjct: 236 TLASLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISP--LAGLTALTNLEL 292

Query: 523 SRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLF 557
           + N         + NL  L++L L +N+    S  
Sbjct: 293 NENQ--LEDISPISNLKNLTYLTLYFNNISDISPV 325

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 4e-13
 Identities = 59/264 (22%), Positives = 93/264 (35%), Gaps = 16/264 (6%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363
               +L L +N+   +      NL   +  +   NN+IS   P   A LV L  L +  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 364 QLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV--NDLLGNIPPSIGNC 418
           QL      + K+LQ L +HEN +     S    L  +    L        G    +    
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSN 478
           K L  +       +       P +  L    +L  N ++    A +  L NL  L +S N
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTEL----HLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 479 MFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG------HIP 532
             S     +L  T        +N+    +P  L+  K I  + L  NN+S         P
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 533 QYLENLSFLSFLNLSYNHFESKSL 556
            Y    +  S ++L  N  +   +
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEI 289

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 8e-13
 Identities = 41/280 (14%), Positives = 80/280 (28%), Gaps = 20/280 (7%)

Query: 22  CQWTGVTCGHRHQRVI---------GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRA 72
           C    V C       +          LDL++  I         NL  L ++ L NN    
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 73  EIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF 132
             P     L +L+ L L+ N               L   E    K+       +  ++  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192
           +L         G    +   +  L  I +    +            +L   ++  N+ + 
Sbjct: 130 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITK 185

Query: 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNL 252
           +        +             ++      N P+LR   ++ N L       L++   +
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYI 244

Query: 253 QKLDINRNLFSG------KVSINFGGLQNLSWLNLGKNNL 286
           Q + ++ N  S                 + S ++L  N +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 40/194 (20%), Positives = 62/194 (31%), Gaps = 6/194 (3%)

Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
           +     +L L  N +         NL  L   +L  N +    P +      L  L   K
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 429 NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488
           N+      +    +  L V  N    +    F         +V L  +    SG      
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 489 -GCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 547
            G   L Y+ + D + T        SL   TEL L  N ++      L+ L+ L+ L LS
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 548 YNHFESKSLFVWPF 561
           +N   +        
Sbjct: 204 FNSISAVDNGSLAN 217

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 48/255 (18%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 84  LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR 143
              L L NN  +     +     NL      NNK++  SP     L+K + L +++N L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 203
                    L  L+       ++   + +  + +  +      L            +  L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 204 EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263
            YI I       ++P  +    P+L    + GN +T     SL    NL KL ++ N  S
Sbjct: 153 SYIRIADT-NITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 264 G-----------------------KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
                                   KV       + +  + L  NN+    +ND       
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 301 TNCTKLEVLVLDSNR 315
           T       + L SN 
Sbjct: 269 TKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 483 EIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 542
           ++P  L       L +Q+N  T        +LK++  L L  N +S   P     L  L 
Sbjct: 24  KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 543 FLNLSYNHFES 553
            L LS N  + 
Sbjct: 83  RLYLSKNQLKE 93

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 9e-11
 Identities = 52/261 (19%), Positives = 83/261 (31%), Gaps = 16/261 (6%)

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGI 334
               + L  N +    A           C  L +L L SN    +   +   L+      
Sbjct: 33  ASQRIFLHGNRISHVPAASFR------ACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 335 AFGNNQISGFIPDGIANLVNLNAL------GVEFNQLAVTILKSLQMLFLHENVLQGTIP 388
              N Q+    P     L  L+ L        E        L +LQ L+L +N LQ    
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 389 SFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL 448
               +L  LT   L  N +      +     +L  L   +N+ +   P     +  L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIP 508
             L  N LS      +  L+ L  L ++ N +  +         L+      +    S+P
Sbjct: 207 -YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

Query: 509 STLSSLKSITELDLSRNNLSG 529
             L+         L+ N+L G
Sbjct: 266 QRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 5e-10
 Identities = 46/256 (17%), Positives = 76/256 (29%), Gaps = 12/256 (4%)

Query: 304 TKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363
              + + L  NR   V   S              N              +       +  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 364 QL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN 417
           QL          L  L  L L    LQ   P     L  L    L+ N L      +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 418 CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISS 477
             NL  L    N+ S    R    + +L  L  L  N ++   P     L  L++L + +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 478 NMFSG-EIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 536
           N  S           +L+YL + DN +     +       + +   S + +   +P   +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---Q 266

Query: 537 NLSFLSFLNLSYNHFE 552
            L+      L+ N  +
Sbjct: 267 RLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 9e-09
 Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 5/249 (2%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
           + L    I    +        L  + L +N            L  L+ L L++N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 99  -PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157
            P        L         L    P     L   Q L + +N L+     +  +L  L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSL 217
            + ++GNR+          + +L    +  N+ + + P                    +L
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 218 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS 277
           P +    L  L++  ++ N        +      LQK   + +     +      L    
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQR---LAGRD 272

Query: 278 WLNLGKNNL 286
              L  N+L
Sbjct: 273 LKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 13/269 (4%)

Query: 62  SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE 121
           + +      +  +P  +      Q + L  N  S     +   C NL      +N LA  
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 122 SPAEIGNLLKFQLLNIAENHLRGQL-PASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL 180
             A    L   + L++++N     + PA+   L  L  ++++   L    P     +  L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 181 ISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
               +  N    +      ++ +L ++F+H N     +P      L +L   ++  N + 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA 190

Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299
                +  +   L  L +  N  S   +     L+ L +L L  N        D     L
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW----VCDCRARPL 246

Query: 300 LTNCTKLEVLVLDSNRFGAVLPFSLANLS 328
                 L+     S+     LP  LA   
Sbjct: 247 WAW---LQKFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 4/226 (1%)

Query: 15  WNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI 74
           W +S  L +                   +  +          L  L +++L     +   
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 75  PHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL 134
           P     L  LQ L L +N              NL       N+++         L     
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
           L + +N +    P +  +L  L  + +  N L        + +R L    +  N +    
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
                 + L+      +    SLP      L       ++ N+L G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQ----RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 49/228 (21%), Positives = 69/228 (30%), Gaps = 19/228 (8%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQ 384
             +      I    N+IS           NL  L +  N LA     +   L L E +  
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL-D 86

Query: 385 GTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIIT 444
            +  + L ++                 P +      L  L   +       P     +  
Sbjct: 87  LSDNAQLRSV----------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 445 LSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-GCTSLEYLCMQDNSF 503
           L  L  L DN L          L NL  L +  N  S        G  SL+ L +  N  
Sbjct: 131 LQYL-YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 504 TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551
               P     L  +  L L  NNLS    + L  L  L +L L+ N +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 43/204 (21%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 349 IANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL 408
           +A+ + +N        L   + K   +L L EN+L     + L   T LTQ  L ++   
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ--LNLDRAE 66

Query: 409 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK 468
                  G    L  L    N+                +  ++S N L+      +  L 
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL--DVSFNRLTSLPLGALRGLG 124

Query: 469 NLVSLDISSNMFSGEIPTTLGCTSLEYLCMQD-NSFTGSIPSTLSSLKSITELDLSRNNL 527
            L  L +  N      P  L  T          N+ T      L+ L+++  L L  N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 528 SGHIPQYLENLSFLSFLNLSYNHF 551
              IP+       L F  L  N +
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 103 SRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVN 162
           S+ ++ ++       L    P ++       +L+++EN L     A++   + L ++N++
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 163 GNRLGGRI---------------------PSTRSHVRNLISFNVGLNQFSGMFPPINNIS 201
              L                         P     +  L   +V  N+ + +        
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNL 261
                   +     +LP  +    P L    ++ NNLT      L+   NL  L +  N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 262 FSGKVSINFGGLQNLSWLNLGKNNL 286
               +   F G   L +  L  N  
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 7/209 (3%)

Query: 54  VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
           V  ++    +N    +    +P ++        L L+ N         L   + L +   
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
              +    +  ++   L         ++    LP     L AL  ++V+ NRL       
Sbjct: 63  DRAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
              +  L    +  N+   + P +   +         N     LP  +   L NL   ++
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLF 262
             N+L  ++      +  L    ++ N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 4/182 (2%)

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNAL---GVEFNQLAVTILKSLQMLFLHEN 381
            +L    T +    N +  F    +     L  L     E  +L V     +       +
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 382 VLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR 441
               ++P     L  LT   +  N L      ++     L  L  + N+     P  L  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-LLT 145

Query: 442 IITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDN 501
                  L+L++N L+      +  L+NL +L +  N          G   L +  +  N
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 502 SF 503
            +
Sbjct: 206 PW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 463 EVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDL 522
           EV K+ + + ++      +  +P  L       L + +N       +TL     +T+L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 523 SRNN 526
            R  
Sbjct: 63  DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 26/190 (13%)

Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
           +LP D+     +     +S N L      +L   T L +L+++R           G L  
Sbjct: 24  ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPV 78

Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL----------------VLDSNRFGAV 319
           L  L+L  N L +          L         L                +         
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 320 LPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL-----AVTILKSLQ 374
           LP  L   +  +  ++  NN ++      +  L NL+ L ++ N L            L 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198

Query: 375 MLFLHENVLQ 384
             FLH N   
Sbjct: 199 FAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPS 509
               N  S    +      +L  L++S+N    E+P       LE L    N     +P 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP--RLERLIASFNHLA-EVPE 321

Query: 510 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 545
              +LK   +L +  N L    P   E++  L   +
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549
             SLE L + +N     +P+    L+    L  S N+L+  +P+  +NL  L   ++ YN
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNLKQL---HVEYN 334

Query: 550 HFES 553
               
Sbjct: 335 PLRE 338

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 11/94 (11%)

Query: 469 NLVSLDISSNMFSGEIPTTL--GCTSLEYLCMQDNSFTG----SIPSTLSSLKSITELDL 522
           ++ SLDI     S      L       + + + D   T      I S L    ++ EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 523 SRNNLSGHIPQYL-----ENLSFLSFLNLSYNHF 551
             N L       +          +  L+L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 489 GCTSLEYLCMQDNSFTG----SIPSTLSSLKSITELDLSRNNLSGHIPQYL-----ENLS 539
             + L  L + D   +     S+ +TL +  S+ ELDLS N L       L     +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 540 FLSFLNLSYNHF 551
            L  L L   ++
Sbjct: 427 LLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 492 SLEYLCMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNL 546
            ++ L +Q    + +     L  L+    + L    L+      I   L     L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 547 SYNHFESKSL 556
             N      +
Sbjct: 63  RSNELGDVGV 72

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 251 NLQKLDINRNLFSGK-VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
           ++Q LDI     S    +     LQ    + L    L      D+   + L     L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPALAEL 60

Query: 310 VLDSNRFGAVLPFSLANL 327
            L SN  G V    +   
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 8/92 (8%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 449 LNLSDNLLS-GHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-----CTSLEYLCMQDNS 502
           L++    LS   +   +  L+    + +     +      +        +L  L ++ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 503 FTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 534
                   +          + + +L       
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 60  LRSINLANNSFR-AEIPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEAS 114
           ++S+++       A     +  L + Q + L +   +      I + L     L +    
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQ 145
           +N+L       +   L+     I +  L+  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 449 LNLSDNLLSG----HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG------CTSLEYLCM 498
           L L+D  +S        A +    +L  LD+S+N         L          LE L +
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 499 QDNSFTGSIPSTLSSLK 515
            D  ++  +   L +L+
Sbjct: 434 YDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 269 NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG----AVLPFSL 324
                  L  L L   ++   + + L     L     L  L L +N  G      L  S+
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSL--AATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLN 356
                 +  +   +   S  + D +  L    
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 468 KNLVSLDISSNMFSGEIPTTLG-----CTSLEYLCMQDNSFTGSIPSTLSS-----LKSI 517
             L  L ++    S    ++L        SL  L + +N    +    L          +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 518 TELDLSRNNLSGHIPQYLENL 538
            +L L     S  +   L+ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 224 NLPNLRFFIISGNNLTG----SLQDSLSNATNLQKLDINRNLFSGKVSINFG-GLQN--- 275
               LR   ++  +++     SL  +L    +L++LD++ N       +     ++    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 276 -LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
            L  L L          + L    L  +   L V+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQ--ALEKDKPSLRVI 459

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 35/249 (14%), Positives = 86/249 (34%), Gaps = 13/249 (5%)

Query: 39  LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK- 97
           LDL  +++   ++  + +   + +     +     +  E  + FR+Q++ L+N+      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 98  IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIA--ENHLRGQLPASIGNLSA 155
           +   LS+CS L        +L+      +        LN++         L   + + S 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 156 LQEINVNGNRLGGRIPSTR-------SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFI 208
           L E+N++                   +  +  +S      Q S +   +    +L ++ +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 209 HRNIYHGSLPLDIGVNLPNLRFFIISG-NNLTGSLQDSLSNATNLQKLDINRNLFSGKVS 267
             ++   +        L  L+   +S   ++       L     L+ L +   +  G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 268 INFGGLQNL 276
           +    L +L
Sbjct: 243 LLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 41/280 (14%), Positives = 89/280 (31%), Gaps = 13/280 (4%)

Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS 216
           Q +++ G  L   +   R   + +I+F    +          +   ++++ +  ++   S
Sbjct: 3   QTLDLTGKNLHPDVTG-RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDI--NRNLFSGKVSINFGGLQ 274
               I      L+   + G  L+  + ++L+  +NL +L++          +        
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGI 334
            L  LNL      T     +    +    T+L +     N   + L   +      +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 335 AFGNNQISGFIPDGIANLVNLNALGVEFNQ-------LAVTILKSLQMLFLHENVLQGTI 387
              +  +          L  L  L +           L +  + +L+ L +   V  GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 388 PSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTR 427
                 L  L         +     P+IGN KN  +   +
Sbjct: 242 QLLKEALPHLQINCSHFTTI---ARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 436 PRQLPRIITLSVL-LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL--GCTS 492
           P    R+++  V+      + +      E      +  +D+S+++        +   C+ 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 493 LEYLCMQDNSFTGSIPSTLSSLKSITELD 521
           L+ L ++    +  I +TL+   ++  L+
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/285 (12%), Positives = 86/285 (30%), Gaps = 21/285 (7%)

Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN 292
           ++G NL   +   L +   +      R+     ++ +F   + +  ++L  + +      
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI-----E 59

Query: 293 DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL 352
                 +L+ C+KL+ L L+  R    +  +LA  S  +     G +  S F    + + 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 353 VNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP 412
            +             T       +      +     S        +     V      + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 413 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472
             + +                   ++  ++  L  L       +      E+G++  L +
Sbjct: 180 LDLSDSVM----------LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229

Query: 473 LDISSNMFSGEIPTTL-GCTSLEYLCMQDNSFTGSIPSTLSSLKS 516
           L +   +  G +         L+  C   + FT     T+ + K+
Sbjct: 230 LQVFGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGNKKN 271

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 449 LNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIP 508
           L+L+   L+      + +L  +  LD+S N      P       LE L   DN+      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE--NV 58

Query: 509 STLSSLKSITELDLSRNNL-SGHIPQYLENLSFLSFLNLSYNHFESKS 555
             +++L  + EL L  N L      Q L +   L  LNL  N    + 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192
           ++L++A   L       +  L  +  ++++ NRL    P+  + +R L       N    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALEN 57

Query: 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
           +    N     E +  +  +   +    +  + P L    + GN+L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 547
            + L  L   DN  +   P  L+SL ++ E+ L  N +S   P  L N S L  + L+
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 27/241 (11%), Positives = 54/241 (22%), Gaps = 19/241 (7%)

Query: 22  CQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNL 81
           C      C       I  DL                     +       R          
Sbjct: 8   CSNRVFLCQESKVTEIPSDL---------------PRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 82  FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENH 141
             L+ + ++ N     I  ++      +                        L  +  ++
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 142 LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS 201
              +    +  + +LQ++ ++           R+    L   +V L         I+N +
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 202 SLEYIFIHRNIYH----GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDI 257
                    N+        LP D+           IS   +       L N   L+    
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 258 N 258
            
Sbjct: 233 Y 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 16/58 (27%)

Query: 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 547
               E     +N+                 LD+SR  +       LENL  L   +  
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549
           C++  +LC Q++  T  IPS L   ++  EL      L             L  + +S N
Sbjct: 8   CSNRVFLC-QESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 550 HF 551
             
Sbjct: 64  DV 65

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 379 HENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
            EN ++         L  L    L  N +   +P S  +  +L  L    N  +      
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-- 143

Query: 439 LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGC 490
           L          +L+        P++   ++++   D+  + F      + GC
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEGC 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	568
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.3e-33  Score=270.31  Aligned_cols=281  Identities=26%  Similarity=0.414  Sum_probs=237.7

Q ss_pred             CcccCCCCCCCCCCCCCCCCCce--eeeceeCCC--CCeEEEEeccCCccccc--cCCcccCCCCCceeeccC-Cccccc
Q 041497            1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHR--HQRVIGLDLRHQSIGGF--LSPFVGNLSFLRSINLAN-NSFRAE   73 (568)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~c~--~~~~~c~~~--~~~i~~L~l~~~~i~~~--~~~~~~~~~~L~~L~ls~-~~~~~~   73 (568)
                      ||+++.||. +++.|..+.|||.  |+||.|...  ..+|+.|||+++.+.+.  ++..+.++++|++|++++ |.+++.
T Consensus        14 ~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~   92 (313)
T d1ogqa_          14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             HHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc
Confidence            688999885 7899999899995  999999763  35899999999998874  568899999999999986 788888


Q ss_pred             CCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCC
Q 041497           74 IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNL  153 (568)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  153 (568)
                      +|.+|+++++|++|++++|++.+..+..+..+.+|+++++++|.+...+|..+..++.|+++++++|.+.+.+|..+..+
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l  172 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc
Confidence            99999999999999999999998888889999999999999999998899999999999999999999988888888888


Q ss_pred             CCC-CeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceE
Q 041497          154 SAL-QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF  231 (568)
Q Consensus       154 ~~L-~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (568)
                      ..+ +.+++++|.+.+..+..+..+..+ .+++..+...+..+ .+..++.++.+++..+.+.+..+. + ..+++|+.|
T Consensus       173 ~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~-~~~~~L~~L  249 (313)
T d1ogqa_         173 SKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-c-ccccccccc
Confidence            776 889999999887778777776554 68888888877776 667788888888888887755442 3 267788888


Q ss_pred             eecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCC
Q 041497          232 IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL  286 (568)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (568)
                      ++++|++++.+|.++..+++|++|+|++|++++..|. ++.+++|+.+++.+|+.
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            8888888888888888888888888888888866663 56677777777777763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.5e-24  Score=213.17  Aligned_cols=82  Identities=21%  Similarity=0.294  Sum_probs=48.8

Q ss_pred             CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeE
Q 041497           80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI  159 (568)
Q Consensus        80 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  159 (568)
                      .+.+|++|+++++.++. + +++..+++|++|++++|++++ ++ .+.++++|++|++++|.+.+.  ..++.+++|+.|
T Consensus        42 ~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc--cccccccccccc
Confidence            44566666666666652 2 345666666666666666653 22 366666666666666666532  235666666666


Q ss_pred             EeccCCCC
Q 041497          160 NVNGNRLG  167 (568)
Q Consensus       160 ~l~~~~~~  167 (568)
                      ++.++.+.
T Consensus       116 ~~~~~~~~  123 (384)
T d2omza2         116 TLFNNQIT  123 (384)
T ss_dssp             ECCSSCCC
T ss_pred             cccccccc
Confidence            66666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=5.3e-24  Score=210.77  Aligned_cols=339  Identities=25%  Similarity=0.365  Sum_probs=152.7

Q ss_pred             cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497           55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL  134 (568)
Q Consensus        55 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  134 (568)
                      ..+.+|++|+++++.++. + ..+..+++|++|++++|++++ ++ .++++++|++|++++|++...  ..+..+++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI--TPLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc--ccccccccccc
Confidence            345566666666666653 2 345566666666666666663 22 266666666666666666532  23556666666


Q ss_pred             eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccccc
Q 041497          135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYH  214 (568)
Q Consensus       135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (568)
                      |+++++.+.+.  ........+.......+.+....+...................    ..+...+.........+...
T Consensus       115 L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         115 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL----KPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC----GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccchh----hhhccccccccccccccccc
Confidence            66666655532  2233344555555544443321111111111111111100000    01111222222222222111


Q ss_pred             ccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCc
Q 041497          215 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDL  294 (568)
Q Consensus       215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  294 (568)
                         .......+++++.+++++|.+++..+  +..+++|++|++++|.+.+..  .+..+++|+.+++.+|.+....+   
T Consensus       189 ---~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---  258 (384)
T d2omza2         189 ---DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP---  258 (384)
T ss_dssp             ---CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG---
T ss_pred             ---cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc---
Confidence               01111134455555555555443322  233445555555555554321  23445555555555555443321   


Q ss_pred             hhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccch----hhc
Q 041497          295 DFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV----TIL  370 (568)
Q Consensus       295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~  370 (568)
                           +..+++|+.++++++++.+..+  +..... ++.+.+..|.+.+.  ..+..+++++.++++.|++..    ..+
T Consensus       259 -----~~~~~~L~~L~l~~~~l~~~~~--~~~~~~-l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~l~~l  328 (384)
T d2omza2         259 -----LSGLTKLTELKLGANQISNISP--LAGLTA-LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSL  328 (384)
T ss_dssp             -----GTTCTTCSEEECCSSCCCCCGG--GTTCTT-CSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGGGGGC
T ss_pred             -----ccccccCCEeeccCcccCCCCc--cccccc-cccccccccccccc--cccchhcccCeEECCCCCCCCCcccccC
Confidence                 3344555555555555544322  222221 44555555544431  223333333333333333221    114


Q ss_pred             cCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccC
Q 041497          371 KSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN  429 (568)
Q Consensus       371 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  429 (568)
                      ++|++|++++|.+++.  ..+..+++|+.|++++|++++..+  +.++++|++|++++|
T Consensus       329 ~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         329 TKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            5566666666665532  245556666666666666654332  555666666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3.4e-25  Score=212.65  Aligned_cols=248  Identities=25%  Similarity=0.406  Sum_probs=192.9

Q ss_pred             CCCceeeccCCcccc--cCCcccCCCCCCcEEeCCC-CcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497           58 SFLRSINLANNSFRA--EIPHEVGNLFRLQNLTLTN-NYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL  134 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  134 (568)
                      .+++.|+++++.+.+  .+|.+++++++|++|++++ |.+++.+|..|+++++|++|++++|++.+..+..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468899999998876  4889999999999999986 7888889999999999999999999999888888999999999


Q ss_pred             eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccC-cEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497          135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL-ISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI  212 (568)
Q Consensus       135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  212 (568)
                      +++++|.+.+.+|..+.+++.|+++++++|.+.+.+|..+..+..+ +.+++++|.+.+..+ .+..+. ...+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            9999999998899999999999999999999988889888888776 788888888887665 444443 3357776666


Q ss_pred             ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCC
Q 041497          213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN  292 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  292 (568)
                      ..+.++.... ..+.++.++++++.+.+..+ .+..+++|+.|++++|++++..|..++.+++|++|++++|++....+.
T Consensus       209 ~~~~~~~~~~-~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEECCGGGCC-TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccc-cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            6655555444 66677777777777665433 456667777777777777766666677777777777777766532221


Q ss_pred             CchhhhcccCCCcccEEEeccCc
Q 041497          293 DLDFITLLTNCTKLEVLVLDSNR  315 (568)
Q Consensus       293 ~~~~~~~l~~~~~L~~L~l~~~~  315 (568)
                             +..+++|+.+++++|+
T Consensus       287 -------~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         287 -------GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -------STTGGGSCGGGTCSSS
T ss_pred             -------cccCCCCCHHHhCCCc
Confidence                   3345555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.3e-22  Score=193.71  Aligned_cols=252  Identities=19%  Similarity=0.155  Sum_probs=151.6

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI  137 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  137 (568)
                      +++++|++++|.++...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..  ....++.|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence            578889999988875555578888899999998888886777788888888999998888873 4433  2457788888


Q ss_pred             ccccCCCCCCcccCCCCCCCeEEeccCCCCC--CCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccc
Q 041497          138 AENHLRGQLPASIGNLSALQEINVNGNRLGG--RIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG  215 (568)
Q Consensus       138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (568)
                      .+|.+.+..+..+.....+..++...+....  ..+..+..+++|+.++++++.+......  .+++|+.|+++++....
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCC
Confidence            8887776555556677777777777665432  3344566667777777776665433211  23455555555555443


Q ss_pred             cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCch
Q 041497          216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD  295 (568)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (568)
                      ..+.. +.+++.++.|++++|.+.+..+.++..+++|++|+|++|+++.+ |.++..+++|++|++++|+++.+....+.
T Consensus       186 ~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         186 VDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CChhH-hhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhcc
Confidence            32222 22445555555555555554455555555555555555555433 33455555555555555555544433222


Q ss_pred             hhhcccCCCcccEEEeccCcc
Q 041497          296 FITLLTNCTKLEVLVLDSNRF  316 (568)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~  316 (568)
                      ........++|+.+++++|.+
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSS
T ss_pred             CcchhcccCCCCEEECCCCcC
Confidence            222233344444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.7e-22  Score=191.49  Aligned_cols=278  Identities=22%  Similarity=0.294  Sum_probs=186.2

Q ss_pred             CceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeeccc
Q 041497           60 LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE  139 (568)
Q Consensus        60 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  139 (568)
                      .++++-++..++ .+|..+.  +.+++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            334444444444 4555442  5678888888888755455677888888888888887766677777888888888888


Q ss_pred             ccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCC--C-CCCCCCCccEEEeeccccccc
Q 041497          140 NHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF--P-PINNISSLEYIFIHRNIYHGS  216 (568)
Q Consensus       140 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~l~~~~~L~~L~l~~~~~~~~  216 (568)
                      |+++. +|..  ..+.++.|.+.+|.+....+..+.....+..++...+......  . .+..+++|+.++++.+.+. .
T Consensus        89 n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          89 NQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             SCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            87763 3433  2357777888777776544445556666777777666443222  1 5666777888888777665 3


Q ss_pred             CCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497          217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF  296 (568)
Q Consensus       217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (568)
                      ++..   .+++|+.|++++|......+..+..++.++.|++++|.+.+..+..+..+++|++|++++|.+..++.     
T Consensus       165 l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-----  236 (305)
T d1xkua_         165 IPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----  236 (305)
T ss_dssp             CCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-----
T ss_pred             cCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-----
Confidence            4433   34677888888887777777777777888888888888877777777778888888888887776543     


Q ss_pred             hhcccCCCcccEEEeccCcccCcCchhhh-----cccccceEEEcccCccc--CCCChhhhhhcc
Q 041497          297 ITLLTNCTKLEVLVLDSNRFGAVLPFSLA-----NLSTTMTGIAFGNNQIS--GFIPDGIANLVN  354 (568)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~~~l~--~~~~~~~~~~~~  354 (568)
                        .+..+++|++|++++|+++.+....+.     .....++.+++++|.+.  ...|.+|..+..
T Consensus       237 --~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         237 --GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             --TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             --ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence              266778888888888887766544432     22234778888888654  344555554433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-23  Score=196.26  Aligned_cols=218  Identities=23%  Similarity=0.207  Sum_probs=168.2

Q ss_pred             ccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccc-cccc
Q 041497          329 TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLE-VNDL  407 (568)
Q Consensus       329 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~  407 (568)
                      ..++.|++++|.++...+.+|..++                  +|+++++++|.+.......+..++.++.+... .+.+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~------------------~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACR------------------NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCT------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccc------------------ccccccccccccccccccccccccccccccccccccc
Confidence            3466777777777665555566543                  45666666666666666666667777776654 4455


Q ss_pred             cCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497          408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT  487 (568)
Q Consensus       408 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  487 (568)
                      +...+..+.++++|++|++++|.+....+..+.....+ +.+++++|.+++..+..|+.+++|++|++++|+++...+..
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhccc-chhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            55566677778888888888887766655556555555 78888888888777778888999999999999998777777


Q ss_pred             cc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccccc
Q 041497          488 LG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIK  566 (568)
Q Consensus       488 ~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~  566 (568)
                      +. +++|+.+++++|.+++..|..|..+++|+.||+++|.+.+..+..|+.+++|+.|++++|++.|.|+..| +..|++
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~-l~~~l~  251 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQ  251 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH-HHHHHH
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH-HHHHHH
Confidence            76 9999999999999998889999999999999999999998888899999999999999999999998764 344443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.1e-21  Score=181.00  Aligned_cols=222  Identities=21%  Similarity=0.258  Sum_probs=136.2

Q ss_pred             eeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecc-ccc
Q 041497           63 INLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIA-ENH  141 (568)
Q Consensus        63 L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~-~~~  141 (568)
                      ++.++..++ .+|..+.  ..+++|+|++|.++...+..|.++++|++|++++|++....+..+..+..++.+... .+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            345555555 4565442  467888888888876666677888888888888888776666677777777777654 444


Q ss_pred             CCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcc
Q 041497          142 LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDI  221 (568)
Q Consensus       142 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  221 (568)
                      +....+..+.++++|++|++++|.+....+..+...++|+.+++++|.+...                        +...
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i------------------------~~~~  148 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL------------------------PDDT  148 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccccc------------------------ChhH
Confidence            5555566677777777777777776644555556666666666666665533                        3333


Q ss_pred             cCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhccc
Q 041497          222 GVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT  301 (568)
Q Consensus       222 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  301 (568)
                      +...++|+.|++++|.+.+..+.+|.++++|+.+++++|.+.+..+..|..+++|++|++++|.+....+.      .+.
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~------~~~  222 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE------ALA  222 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH------HHT
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc------ccc
Confidence            33445555555555555555555555555566666666655555555555555555555555555544321      244


Q ss_pred             CCCcccEEEeccCccc
Q 041497          302 NCTKLEVLVLDSNRFG  317 (568)
Q Consensus       302 ~~~~L~~L~l~~~~~~  317 (568)
                      .+++|+.+++++|++.
T Consensus       223 ~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         223 PLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccccCEEEecCCCCC
Confidence            5555666666665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=182.57  Aligned_cols=189  Identities=25%  Similarity=0.216  Sum_probs=160.9

Q ss_pred             cCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEE
Q 041497          371 KSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN  450 (568)
Q Consensus       371 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~  450 (568)
                      +++++|++++|.++...+..|.++++|++|++++|+++...  .+..+++|++|++++|++... +..+..+..+ +.++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L-~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPAL-TVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTC-CEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccccc-cccccccccc-cccc
Confidence            46889999999998777778899999999999999987543  346789999999999988754 5566666666 9999


Q ss_pred             ccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          451 LSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       451 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      +++|.+.+..+..+..+.++++|++++|.++...+..+. +++|+.+++++|++++..+..|..+++|++|+|++|.++ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            999999877788889999999999999999866666666 899999999999999888888999999999999999999 


Q ss_pred             CcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497          530 HIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI  565 (568)
Q Consensus       530 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  565 (568)
                      .+|+.+..+++|+.|+|++||+.|.|...| +..|+
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~-l~~wl  220 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPWLCNCEILY-FRRWL  220 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSGGGHH-HHHHH
T ss_pred             ccChhHCCCCCCCEEEecCCCCCCCcchHH-HHHHH
Confidence            577778889999999999999999997654 34443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=168.26  Aligned_cols=197  Identities=21%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEec
Q 041497           83 RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVN  162 (568)
Q Consensus        83 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  162 (568)
                      .+..++.+++.++ .+|..+.  +++++|+|++|+++...+..|.++++|++|++++|.++. + ..++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l-~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-L-QVDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-E-ECCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-c-ccccccccccccccc
Confidence            3334445444444 3343331  345555555555543333445555555555555555442 1 123445555555555


Q ss_pred             cCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccccc
Q 041497          163 GNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSL  242 (568)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  242 (568)
                      +|++. ..+..+..+++|+.|+++++.+.....                        ..+..+.+++++++++|.+....
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~------------------------~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------------------------GALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------------------------STTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccccc-ccccccccccccccccccccccceeec------------------------cccccccccccccccccccceec
Confidence            55544 233444445555555555444433222                        11123333444444444444333


Q ss_pred             CccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcc
Q 041497          243 QDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF  316 (568)
Q Consensus       243 ~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  316 (568)
                      +..+..+++++.+++++|++++..+..|+.+++|++|++++|.++.++.+       +..+++|+.|++++|.+
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-------~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-------FFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCCCSEEECCSCCB
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCcccChh-------HCCCCCCCEEEecCCCC
Confidence            33444444444444444444444444444444444444444444443322       22344455555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=3.3e-16  Score=152.04  Aligned_cols=70  Identities=23%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             cCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeee
Q 041497          466 KLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN  545 (568)
Q Consensus       466 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  545 (568)
                      .+++|++|++++|+++ .+|..  +++|+.|+|++|+++ .+|..   +++|++|++++|+++. +|+..   .+|+.|.
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~~~---~~L~~L~  350 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIP---ESVEDLR  350 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCCCC---TTCCEEE
T ss_pred             cCCCCCEEECCCCccC-ccccc--cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCccc---cccCeeE
Confidence            3567888888888877 55543  577888888888887 44432   4578888888888773 45432   3455555


Q ss_pred             c
Q 041497          546 L  546 (568)
Q Consensus       546 l  546 (568)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4e-20  Score=187.05  Aligned_cols=382  Identities=18%  Similarity=0.144  Sum_probs=177.1

Q ss_pred             cCceeecccccCCCCC-CcccCCCCCCCeEEeccCCCCCC----CCccccccccCcEEeecccccccCCCCCCCCCCccE
Q 041497          131 KFQLLNIAENHLRGQL-PASIGNLSALQEINVNGNRLGGR----IPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEY  205 (568)
Q Consensus       131 ~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~  205 (568)
                      +|+.|+++.+++++.. ...++.+++++.|++++|.++..    ++..+..+++|++|++++|.+.+...          
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~----------   72 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV----------   72 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH----------
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH----------
Confidence            4566666666665311 12234455666666666655421    12223444555555555554431100          


Q ss_pred             EEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCCCCCeEecCCCcccccccCCc-----cCCCCC
Q 041497          206 IFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQKLDINRNLFSGKVSINF-----GGLQNL  276 (568)
Q Consensus       206 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~~~~-----~~~~~L  276 (568)
                               ..+...+.....+|++|++++|.+++.    .+..+..+++|++|++++|.+.+.....+     ......
T Consensus        73 ---------~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~  143 (460)
T d1z7xw1          73 ---------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL  143 (460)
T ss_dssp             ---------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             ---------HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccc
Confidence                     011111111234677777777776643    23455667778888888887654322211     112223


Q ss_pred             cEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCch----hhhcccccceEEEcccCcccCCCC----hh
Q 041497          277 SWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPF----SLANLSTTMTGIAFGNNQISGFIP----DG  348 (568)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~~~l~~~~~----~~  348 (568)
                      ...............  ..+...+...+.++.+.++.+........    .+.........+++..+.+.....    ..
T Consensus       144 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (460)
T d1z7xw1         144 EKLQLEYCSLSAASC--EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  221 (460)
T ss_dssp             CEEECTTSCCBGGGH--HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             ccccccccccchhhh--cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccc
Confidence            334433333222111  12233345566777777776654432111    112222235566666665443211    22


Q ss_pred             hhhhccccccCccccccchhh-----------ccCCCeeECccCccccccC----ccccCcccccccccccccccCCCCC
Q 041497          349 IANLVNLNALGVEFNQLAVTI-----------LKSLQMLFLHENVLQGTIP----SFLGNLTMLTQRLLEVNDLLGNIPP  413 (568)
Q Consensus       349 ~~~~~~L~~l~l~~~~~~~~~-----------~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~  413 (568)
                      +.....++.+++..+......           ...++.+++++|.+.....    ..+...+.++.+++++|.++.....
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            333445555555555442211           4456666666665543211    1233345555555555554322111


Q ss_pred             C-----ccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccC----
Q 041497          414 S-----IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEI----  484 (568)
Q Consensus       414 ~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~----  484 (568)
                      .     ......|+.++++++.+.......+.                     ..+...++|++|+|++|++++..    
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~---------------------~~~~~~~~L~~L~Ls~N~i~~~g~~~l  360 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFS---------------------SVLAQNRFLLELQISNNRLEDAGVREL  360 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---------------------HHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             hhhccccccccccccccccccchhhhhhhhcc---------------------cccccccchhhhheeeecccCcccchh
Confidence            1     11223444444444443322111111                     12234456666666666664321    


Q ss_pred             CCccc--ccccceeeccccccccc----CCccCcCCCCCCEEeCCCCccccCcCccc----c-ccccCCeeecccCcccc
Q 041497          485 PTTLG--CTSLEYLCMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHIPQYL----E-NLSFLSFLNLSYNHFES  553 (568)
Q Consensus       485 ~~~~~--~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~i~~  553 (568)
                      +..+.  .+.|++|+|++|++++.    +++.+..+++|++||+++|.++......|    . +...|+.|++.+|.+..
T Consensus       361 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            11111  34566666666666542    22334455667777777776654322222    1 22356667777666654


Q ss_pred             c
Q 041497          554 K  554 (568)
Q Consensus       554 ~  554 (568)
                      .
T Consensus       441 ~  441 (460)
T d1z7xw1         441 E  441 (460)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=3.7e-15  Score=144.41  Aligned_cols=137  Identities=21%  Similarity=0.260  Sum_probs=78.0

Q ss_pred             eEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEecc
Q 041497           35 RVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  114 (568)
Q Consensus        35 ~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  114 (568)
                      ++++|||+++.++..+ +   ..++|++|++++|.++ .+|..   ..+|+.|++++|.++ .+++.   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLP-E---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCC-C---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            4567777777766532 2   2456777777777776 45543   346677777777666 33321   1357777777


Q ss_pred             CCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccc
Q 041497          115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS  191 (568)
Q Consensus       115 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (568)
                      +|.+. .+| .+..+++|++|+++++.+... +.   ..+.+..+.+..+...  ....+..++.++.+++..+...
T Consensus       107 ~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLE-KLP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-ccc-chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            77765 333 245667777777776665522 11   2344555555544432  2334555566666666655544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.5e-17  Score=149.13  Aligned_cols=188  Identities=22%  Similarity=0.374  Sum_probs=91.8

Q ss_pred             CCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCe
Q 041497           79 GNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE  158 (568)
Q Consensus        79 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  158 (568)
                      +.+.+|+.|++.+|.++ .+ +++..+++|++|++++|++...  ..+..+++|+++++++|.++. + ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN-V-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeecc--ccccccccccccccccccccc-c-ccccccccccc
Confidence            34455555555555555 22 2355555555555555555422  125555555555555555542 1 23455555555


Q ss_pred             EEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcc
Q 041497          159 INVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL  238 (568)
Q Consensus       159 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (568)
                      ++++++...+  ...+...+.++.+.++.+.+.... .+.                         ..++|+.|++++|.+
T Consensus       112 l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~-~~~-------------------------~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         112 LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNIS-PLA-------------------------GLTNLQYLSIGNAQV  163 (227)
T ss_dssp             EECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCCG-GGG-------------------------GCTTCCEEECCSSCC
T ss_pred             cccccccccc--cchhccccchhhhhchhhhhchhh-hhc-------------------------ccccccccccccccc
Confidence            5555554431  122333444444444433332111 111                         344455555555544


Q ss_pred             ccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEec
Q 041497          239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLD  312 (568)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  312 (568)
                      .+.  ..+..+++|++|++++|++.+..+  ++.+++|++|++++|+++++.+        +..+++|+.|+++
T Consensus       164 ~~~--~~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--------l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 SDL--TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTLT  225 (227)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEEEE
T ss_pred             ccc--hhhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--------cccCCCCCEEEee
Confidence            422  124455556666666665554322  4555666666666665554331        4455666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.8e-20  Score=184.16  Aligned_cols=348  Identities=16%  Similarity=0.069  Sum_probs=190.6

Q ss_pred             ccEEEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCCCCCeEecCCCccccccc----CCcc-CC
Q 041497          203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQKLDINRNLFSGKVS----INFG-GL  273 (568)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~----~~~~-~~  273 (568)
                      |+.|+++++.+++..-..+...++++++|++++|+++..    +...+..+++|++|+|++|.+++...    ..+. ..
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~   83 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS   83 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCC
Confidence            444444444443321122222445566666666655532    12334456666666666666543211    1111 22


Q ss_pred             CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhc----ccccceEEEcccCcccCCC----
Q 041497          274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLAN----LSTTMTGIAFGNNQISGFI----  345 (568)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L~l~~~~l~~~~----  345 (568)
                      .+|++|++++|.++.....  .+...+..+++|++|++++|.+.......+..    ...................    
T Consensus        84 ~~L~~L~L~~n~it~~~~~--~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHH--HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCEEECCCCCccccccc--cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            3566666666665543211  22334556666777777666655432222111    1111222333332221111    


Q ss_pred             ChhhhhhccccccCccccccchhh-----------ccCCCeeECccCccccc----cCccccCcccccccccccccccCC
Q 041497          346 PDGIANLVNLNALGVEFNQLAVTI-----------LKSLQMLFLHENVLQGT----IPSFLGNLTMLTQRLLEVNDLLGN  410 (568)
Q Consensus       346 ~~~~~~~~~L~~l~l~~~~~~~~~-----------~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~  410 (568)
                      ...+.....++.++++.+......           ......+.+..+.+...    ....+...+.++.+++.++.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            112223344555555555443211           22455666666654322    112234466777778777765321


Q ss_pred             -----CCCCccCCCCceEEEcccCCCCCCCCCch----hHHhhhceEEEccCCcccccCchhh-----hcCCCCcEEecC
Q 041497          411 -----IPPSIGNCKNLILLTTRKNKPSGTMPRQL----PRIITLSVLLNLSDNLLSGHFPAEV-----GKLKNLVSLDIS  476 (568)
Q Consensus       411 -----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~l~~~l~Ls~n~l~~~~~~~l-----~~l~~L~~L~ls  476 (568)
                           ..........++.+++++|.+.......+    ..... +..+++++|.++......+     .....|+.++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~-l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ccchhhccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhcccccccccccccccc
Confidence                 22234456788888888887654322211    12223 3788899988874333322     235689999999


Q ss_pred             CCcccccCCCccc-----ccccceeecccccccccC----CccCc-CCCCCCEEeCCCCccccC----cCccccccccCC
Q 041497          477 SNMFSGEIPTTLG-----CTSLEYLCMQDNSFTGSI----PSTLS-SLKSITELDLSRNNLSGH----IPQYLENLSFLS  542 (568)
Q Consensus       477 ~n~l~~~~~~~~~-----~~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~  542 (568)
                      +|.++......+.     +.+|++|+|++|++++..    +.++. ..+.|++|++++|.++..    +++.+..+++|+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            9988755433332     678999999999987532    23333 467899999999999753    445677789999


Q ss_pred             eeecccCcccc
Q 041497          543 FLNLSYNHFES  553 (568)
Q Consensus       543 ~L~l~~n~i~~  553 (568)
                      +|++++|+|+.
T Consensus       401 ~L~Ls~N~i~~  411 (460)
T d1z7xw1         401 ELDLSNNCLGD  411 (460)
T ss_dssp             EEECCSSSCCH
T ss_pred             EEECCCCcCCH
Confidence            99999999975

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=143.45  Aligned_cols=204  Identities=20%  Similarity=0.290  Sum_probs=143.8

Q ss_pred             EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497           37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  116 (568)
Q Consensus        37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  116 (568)
                      ..++++.+.+.+..  .+..+.+|++|++.+|.++. + ..+..+++|++|++++|.+++..  .+..+++|+++++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence            34566666666643  45678889999999998874 4 46889999999999999887433  3888999999999999


Q ss_pred             cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCC
Q 041497          117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP  196 (568)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (568)
                      .++. + ..+..+++|++++++++...+.  ..+...+.++.+.++.+.+..  ...+..+++|+.|++++|.+.... .
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~-~  168 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT-P  168 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred             cccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhch--hhhhccccccccccccccccccch-h
Confidence            8863 3 4678899999999998877543  457778899999998887753  345677888999998888665322 2


Q ss_pred             CCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCC
Q 041497          197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNL  276 (568)
Q Consensus       197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L  276 (568)
                      +.                         ++++|+.|++++|++++.  ..+..+++|++|++++|+++++.+  ++.+++|
T Consensus       169 l~-------------------------~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L  219 (227)
T d1h6ua2         169 LA-------------------------NLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNL  219 (227)
T ss_dssp             GT-------------------------TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred             hc-------------------------ccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCcc--cccCCCC
Confidence            33                         445555666666555532  225556666666666666664433  5566666


Q ss_pred             cEEECC
Q 041497          277 SWLNLG  282 (568)
Q Consensus       277 ~~L~l~  282 (568)
                      +.|+++
T Consensus       220 ~~L~ls  225 (227)
T d1h6ua2         220 FIVTLT  225 (227)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.9e-17  Score=147.15  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCC-CCcccccCCCCcEEeccC-CcccccCchhhcCcCcCcee
Q 041497           58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASN-NKLAGESPAEIGNLLKFQLL  135 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  135 (568)
                      +++++|++++|.++...+.+|.++++|++|++++|.+... .+..|.++++++++.+.+ |.+....+..|.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            3567777777776644444566777777777777766532 234566666666666543 34444445555666666666


Q ss_pred             ecccccCC
Q 041497          136 NIAENHLR  143 (568)
Q Consensus       136 ~l~~~~l~  143 (568)
                      ++.+|.+.
T Consensus       109 ~l~~~~l~  116 (242)
T d1xwdc1         109 LISNTGIK  116 (242)
T ss_dssp             EEESCCCC
T ss_pred             ccchhhhc
Confidence            66666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.3e-16  Score=140.93  Aligned_cols=218  Identities=17%  Similarity=0.121  Sum_probs=153.5

Q ss_pred             ceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccC-chhhcCcCcCceeeccc
Q 041497           61 RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGES-PAEIGNLLKFQLLNIAE  139 (568)
Q Consensus        61 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~  139 (568)
                      ++++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..|.++++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34555555555 4565442  47899999999988555667888999999999998876433 45677888888888764


Q ss_pred             -ccCCCCCCcccCCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccccCCC-CCCCC-CCccEEEeecccccc
Q 041497          140 -NHLRGQLPASIGNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGMFP-PINNI-SSLEYIFIHRNIYHG  215 (568)
Q Consensus       140 -~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~  215 (568)
                       +.+....+..+..+++|++++++++.+....+ ..+..++.+..+....+.+..... .+..+ ..++.+++.++.+. 
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-
Confidence             56665666778889999999999988763222 223445556555666666655444 55544 47888888888776 


Q ss_pred             cCCCcccCCCCCcceE-eecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCC
Q 041497          216 SLPLDIGVNLPNLRFF-IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK  283 (568)
Q Consensus       216 ~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~  283 (568)
                      .++...+ ..++++.+ ++.+|.++...+..|.++++|++|++++|+++.+.+..|..+++|+.+++.+
T Consensus       167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         167 EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            4555555 44555544 5677888866667788999999999999999877777777777777666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.6e-16  Score=137.97  Aligned_cols=157  Identities=20%  Similarity=0.159  Sum_probs=96.4

Q ss_pred             cccccccccccCCCCCCccCCCCceEEEcccCCCCCCC-CCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecC
Q 041497          398 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTM-PRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDIS  476 (568)
Q Consensus       398 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls  476 (568)
                      +.++.++++++. +|..+  .+++++|++++|++...+ +..|..+..+ +.|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCc-cCCCC--CCCCCEEEeCCCCCcccccccccCCCceE-eeeeccccccccccccccccccccceeeec
Confidence            456677777763 44443  256777777777776533 3344555555 667777777666666666666777777777


Q ss_pred             CCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccC
Q 041497          477 SNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       477 ~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~  555 (568)
                      +|+++...+..|. +++|++|+|++|+++.+.++.|..+++|++|++++|++.... +...-..+++...+..+.+.|..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeCC
Confidence            7776655555555 677777777777776666666666677777777777665322 11112234555666666666666


Q ss_pred             CCCc
Q 041497          556 LFVW  559 (568)
Q Consensus       556 ~~~~  559 (568)
                      |..+
T Consensus       166 p~~l  169 (192)
T d1w8aa_         166 PSKV  169 (192)
T ss_dssp             STTT
T ss_pred             Chhh
Confidence            6544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=5.2e-16  Score=136.89  Aligned_cols=161  Identities=27%  Similarity=0.305  Sum_probs=90.1

Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL  449 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l  449 (568)
                      ++++++|+++++.++..  +.++.+++|++|++++|++++..  .+.++++|++|++++|.+....  .+..+..+ +.+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L-~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNL-TGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTC-SEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--cccccccc-ccc
Confidence            56778888888877642  34677788888888888776543  2677777777777776654321  23333333 455


Q ss_pred             EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      +++++.+...  ..+..+++|+.|++++|++. .++....+++|+.|++++|.+++.  ..++++++|++|++++|++++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhc-ccccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC
Confidence            5555544421  23455555555555555554 333222355555555555555532  135555555555555555553


Q ss_pred             CcCccccccccCCee
Q 041497          530 HIPQYLENLSFLSFL  544 (568)
Q Consensus       530 ~~~~~~~~l~~L~~L  544 (568)
                      . + .+.++++|++|
T Consensus       187 i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 I-S-VLAKLTNLESL  199 (199)
T ss_dssp             C-G-GGGGCTTCSEE
T ss_pred             C-c-cccCCCCCCcC
Confidence            2 1 34555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=7.3e-16  Score=137.13  Aligned_cols=165  Identities=26%  Similarity=0.287  Sum_probs=128.6

Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL  449 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l  449 (568)
                      +.+|+.|++++|.++..  ..++.+++|++|++++|++++..  .+..+++|++|++++|++.+. + .+..+..+ +.+
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L-~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKL-KSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTC-CEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccc-ccc
Confidence            66788888888888743  24777888999999998887643  357788899999988887642 2 45556666 888


Q ss_pred             EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497          450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  529 (568)
Q Consensus       450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (568)
                      ++++|.+..  ...+..++.++.+++++|.++ ..+....+++|+.+++++|++++. + .+.++++|++|++++|.++.
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~-~~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccc--ccccccccccccccccccccc-cccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            888888763  246888999999999999987 344333489999999999999854 3 48889999999999999985


Q ss_pred             CcCccccccccCCeeeccc
Q 041497          530 HIPQYLENLSFLSFLNLSY  548 (568)
Q Consensus       530 ~~~~~~~~l~~L~~L~l~~  548 (568)
                      . + .+.++++|++|+|++
T Consensus       193 l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 L-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             C-G-GGTTCTTCSEEEEEE
T ss_pred             C-h-hhcCCCCCCEEEccC
Confidence            4 4 588999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.7e-15  Score=131.29  Aligned_cols=163  Identities=22%  Similarity=0.335  Sum_probs=92.3

Q ss_pred             cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497           55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL  134 (568)
Q Consensus        55 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  134 (568)
                      ..++++++|+++++.++. + +.++.+++|++|++++|++++. + .++++++|++|++++|.+.. ++ .+.+++.|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCccccccccccccccc-cc-cccccccccc
Confidence            345566666666666552 2 2355666666666666666532 2 25666666666666666542 22 3556666666


Q ss_pred             eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccccc
Q 041497          135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYH  214 (568)
Q Consensus       135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (568)
                      |+++++.....  ..+..+++|+.|++++|.+.  ....+..+++++.|++.+|.+.+. +.+..+++|+.|++++|.++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~--~~~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTIS--DISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCC--CCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhc--ccccccccccccccccccccccCC-ccccCCCCCCEEECCCCCCC
Confidence            66666655432  34556666666666666654  223456666666666666665543 24566666666666666655


Q ss_pred             ccCCCcccCCCCCcceE
Q 041497          215 GSLPLDIGVNLPNLRFF  231 (568)
Q Consensus       215 ~~~~~~~~~~~~~L~~L  231 (568)
                      + ++.  ..++++|++|
T Consensus       186 ~-i~~--l~~L~~L~~L  199 (199)
T d2omxa2         186 D-ISV--LAKLTNLESL  199 (199)
T ss_dssp             C-CGG--GGGCTTCSEE
T ss_pred             C-Ccc--ccCCCCCCcC
Confidence            2 321  2255666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3e-15  Score=133.09  Aligned_cols=166  Identities=19%  Similarity=0.291  Sum_probs=110.1

Q ss_pred             CCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497           56 NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL  135 (568)
Q Consensus        56 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  135 (568)
                      .+.+|++|+++++.+.. + ..+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++. ++ .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC-c-hhHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            45667777777777663 2 246677777777777777763 23 35667777777777777763 23 46677777777


Q ss_pred             ecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccc
Q 041497          136 NIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG  215 (568)
Q Consensus       136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (568)
                      ++++|.+..  ...+..++.++.+++++|.+.  .+..+..+++|+.+++++|.+.+. +.+.++++|+.|++++|.++ 
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~--~~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i~-  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccc-ccccCCCCCCEEECCCCCCC-
Confidence            777776652  245667777777777777764  234566677777777777777643 34667777777777777765 


Q ss_pred             cCCCcccCCCCCcceEeecC
Q 041497          216 SLPLDIGVNLPNLRFFIISG  235 (568)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~  235 (568)
                      .++.  +.++++|++|++++
T Consensus       192 ~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             BCGG--GTTCTTCSEEEEEE
T ss_pred             CChh--hcCCCCCCEEEccC
Confidence            3442  23677888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=6.3e-16  Score=135.52  Aligned_cols=110  Identities=22%  Similarity=0.318  Sum_probs=84.2

Q ss_pred             CCCceeeccCCccccc-CCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497           58 SFLRSINLANNSFRAE-IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN  136 (568)
Q Consensus        58 ~~L~~L~ls~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  136 (568)
                      +++++|++++|.++.. .+..|.++++|++|++++|.+....+..+..+++|++|++++|++....+..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            5778888888888643 455667788888888888888777777777888888888888888766677777788888888


Q ss_pred             cccccCCCCCCcccCCCCCCCeEEeccCCCC
Q 041497          137 IAENHLRGQLPASIGNLSALQEINVNGNRLG  167 (568)
Q Consensus       137 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  167 (568)
                      |++|.+++..+..|..+++|++|++++|++.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccc
Confidence            8888877666667777777777777777764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.8e-16  Score=144.72  Aligned_cols=224  Identities=16%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCC-CCcccccCCCCcEEeccC
Q 041497           37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASN  115 (568)
Q Consensus        37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~  115 (568)
                      +++|++++.+.......+.. ..+..+.++...+.... .......+|++|+++++.++.. +...+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46777776654322111111 12334444444333211 1223445667777776665422 222345566666666666


Q ss_pred             CcccccCchhhcCcCcCceeeccccc-CCCC-CCcccCCCCCCCeEEeccCCCCCC--CCccccccccCcEEeecccccc
Q 041497          116 NKLAGESPAEIGNLLKFQLLNIAENH-LRGQ-LPASIGNLSALQEINVNGNRLGGR--IPSTRSHVRNLISFNVGLNQFS  191 (568)
Q Consensus       116 n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~  191 (568)
                      |.+....+..+..+++|++|++++|. ++.. +......+++|++|++++|.....  ....+..               
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~---------------  145 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH---------------  145 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH---------------
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc---------------
Confidence            66555455555666666666666642 2210 011123345555555554421100  0001111               


Q ss_pred             cCCCCCCCCCCccEEEeeccc--ccccCCCcccCCCCCcceEeecCC-ccccccCccCCCCCCCCeEecCCC-ccccccc
Q 041497          192 GMFPPINNISSLEYIFIHRNI--YHGSLPLDIGVNLPNLRFFIISGN-NLTGSLQDSLSNATNLQKLDINRN-LFSGKVS  267 (568)
Q Consensus       192 ~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~L~~n-~~~~~~~  267 (568)
                             .++.|+.|+++++.  +++.....++..+++|++|++++| .+++.....+..+++|++|++++| .+++...
T Consensus       146 -------~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         146 -------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             -------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             -------cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence                   12334444443321  111111112224566666666654 344444455556666666666664 3444333


Q ss_pred             CCccCCCCCcEEECCCC
Q 041497          268 INFGGLQNLSWLNLGKN  284 (568)
Q Consensus       268 ~~~~~~~~L~~L~l~~~  284 (568)
                      ..++.+++|+.|++.++
T Consensus       219 ~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         219 LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTS
T ss_pred             HHHhcCCCCCEEeeeCC
Confidence            44555566666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=7e-14  Score=111.96  Aligned_cols=104  Identities=27%  Similarity=0.321  Sum_probs=83.2

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN  525 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (568)
                      +.|++++|+++. .+ .+..+++|++|++++|+++ .+|..++ +++|+.|++++|.++.. + .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            357888888873 33 4788889999999999987 6676666 89999999999998843 3 5888899999999999


Q ss_pred             ccccCcC-ccccccccCCeeecccCcccccC
Q 041497          526 NLSGHIP-QYLENLSFLSFLNLSYNHFESKS  555 (568)
Q Consensus       526 ~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~  555 (568)
                      +++.... ..+..+++|+.+++++|+++...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9886543 56788899999999999987654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=121.17  Aligned_cols=127  Identities=14%  Similarity=0.118  Sum_probs=78.5

Q ss_pred             ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497           54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ  133 (568)
Q Consensus        54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  133 (568)
                      +.+..++|+|++++|+++ .++..+..+++|++|++++|.++ .+ +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            456666777777777766 34555566677777777777766 33 2466677777777777777654444455677777


Q ss_pred             eeecccccCCCCC-CcccCCCCCCCeEEeccCCCCCCCCc----cccccccCcEEe
Q 041497          134 LLNIAENHLRGQL-PASIGNLSALQEINVNGNRLGGRIPS----TRSHVRNLISFN  184 (568)
Q Consensus       134 ~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~  184 (568)
                      +|++++|.+.... ...+..+++|++|++++|++. ..+.    .+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            7777777665321 134566677777777777664 2232    345566666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.7e-15  Score=136.58  Aligned_cols=185  Identities=18%  Similarity=0.137  Sum_probs=121.2

Q ss_pred             ccCCCeeECccCccccccCccccCcccccccccccc-cccCCCCCC-ccCCCCceEEEcccCCC-CCCC-CCchhHHhhh
Q 041497          370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN-DLLGNIPPS-IGNCKNLILLTTRKNKP-SGTM-PRQLPRIITL  445 (568)
Q Consensus       370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~-l~~~~~L~~L~l~~~~~-~~~~-~~~~~~~~~l  445 (568)
                      +++|++|++.+|.+++.....+..+++|+.|++++| .+++..... ..+|++|++|++++|.. .+.. ...+......
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            667888888888777666666777888888888875 444322222 35678888888888643 2111 1112222233


Q ss_pred             ceEEEccCCc--ccccCc-hhhhcCCCCcEEecCCCc-ccccCCCccc-ccccceeecccc-cccccCCccCcCCCCCCE
Q 041497          446 SVLLNLSDNL--LSGHFP-AEVGKLKNLVSLDISSNM-FSGEIPTTLG-CTSLEYLCMQDN-SFTGSIPSTLSSLKSITE  519 (568)
Q Consensus       446 ~~~l~Ls~n~--l~~~~~-~~l~~l~~L~~L~ls~n~-l~~~~~~~~~-~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  519 (568)
                      ++.++++++.  ++.... ..+..+++|++|++++|. +++.....+. +++|++|++++| .+++.....++++++|+.
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            4888888753  443222 234578999999999974 6766666666 899999999996 677777777888999999


Q ss_pred             EeCCCCcccc-CcCccccccccCCeeecccCcccccCCCC
Q 041497          520 LDLSRNNLSG-HIPQYLENLSFLSFLNLSYNHFESKSLFV  558 (568)
Q Consensus       520 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  558 (568)
                      |++++| ++. ..+.....++.   |.++.++++...+..
T Consensus       230 L~l~~~-~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~  265 (284)
T d2astb2         230 LQVFGI-VPDGTLQLLKEALPH---LQINCSHFTTIARPT  265 (284)
T ss_dssp             EECTTS-SCTTCHHHHHHHSTT---SEESCCCSCCTTCSS
T ss_pred             EeeeCC-CCHHHHHHHHHhCcc---ccccCccCCCCCCCc
Confidence            999998 432 22222234444   456777776654433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2e-13  Score=109.19  Aligned_cols=86  Identities=26%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             cCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCC-CcccCCCCCC
Q 041497           78 VGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQL-PASIGNLSAL  156 (568)
Q Consensus        78 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L  156 (568)
                      +..+++|++|++++|.++ .+|..+..+++|++|++++|+++. ++ ++..+++|++|++++|.+.... ...+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            334444444444444443 233334444444444444444431 11 2344444444444444443211 1223344444


Q ss_pred             CeEEeccCCC
Q 041497          157 QEINVNGNRL  166 (568)
Q Consensus       157 ~~L~l~~~~~  166 (568)
                      ++|++++|++
T Consensus        93 ~~L~l~~N~i  102 (124)
T d1dcea3          93 VLLNLQGNSL  102 (124)
T ss_dssp             CEEECTTSGG
T ss_pred             CEEECCCCcC
Confidence            4444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.8e-14  Score=117.28  Aligned_cols=126  Identities=20%  Similarity=0.110  Sum_probs=86.4

Q ss_pred             cCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccc
Q 041497          416 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLE  494 (568)
Q Consensus       416 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~  494 (568)
                      .++..+++|++++|++... +..+..+..+ +.|++++|.|+..  +.+..+++|++|++++|+++...+..+. +++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L-~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccC-CEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            3444555555555555432 2223333333 6667777776633  3577888999999999999854445555 89999


Q ss_pred             eeecccccccccCC-ccCcCCCCCCEEeCCCCccccCc---CccccccccCCeee
Q 041497          495 YLCMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHI---PQYLENLSFLSFLN  545 (568)
Q Consensus       495 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  545 (568)
                      .|++++|.++.... ..+..+++|+.|++++|+++...   +..+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999875322 46788899999999999987543   23577889998887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=8.7e-15  Score=141.15  Aligned_cols=92  Identities=21%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             hhhcCCCCcEEecCCCccccc----CCCccc-ccccceeecccccccccCCcc----Cc--CCCCCCEEeCCCCccccCc
Q 041497          463 EVGKLKNLVSLDISSNMFSGE----IPTTLG-CTSLEYLCMQDNSFTGSIPST----LS--SLKSITELDLSRNNLSGHI  531 (568)
Q Consensus       463 ~l~~l~~L~~L~ls~n~l~~~----~~~~~~-~~~L~~L~Ls~n~l~~~~~~~----~~--~l~~L~~L~l~~n~l~~~~  531 (568)
                      .+..+++|++|++++|.++..    +...+. +++|++|+|++|.+++.....    +.  ..+.|++||+++|.++...
T Consensus       210 ~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            455677777788877776532    222233 677777888877776532222    22  2356888888888776422


Q ss_pred             ----Ccccc-ccccCCeeecccCccccc
Q 041497          532 ----PQYLE-NLSFLSFLNLSYNHFESK  554 (568)
Q Consensus       532 ----~~~~~-~l~~L~~L~l~~n~i~~~  554 (568)
                          ...+. +.+.|+.|++++|++...
T Consensus       290 ~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         290 VRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                22332 456788888888887654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=2.8e-14  Score=137.51  Aligned_cols=246  Identities=20%  Similarity=0.179  Sum_probs=126.2

Q ss_pred             cccCCCCCceeeccCCccccc----CCcccCCCCCCcEEeCCCCcCCCCC----------CcccccCCCCcEEeccCCcc
Q 041497           53 FVGNLSFLRSINLANNSFRAE----IPHEVGNLFRLQNLTLTNNYFSGKI----------PTNLSRCSNLVKFEASNNKL  118 (568)
Q Consensus        53 ~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----------~~~~~~l~~L~~L~l~~n~~  118 (568)
                      .+.....|++|++++|.+...    +...+...++|+.++++++......          ...+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            345566666677766665432    2334456666667766655433111          11223455666666666655


Q ss_pred             ccc----CchhhcCcCcCceeecccccCCCCCC-------------cccCCCCCCCeEEeccCCCCCCC----Ccccccc
Q 041497          119 AGE----SPAEIGNLLKFQLLNIAENHLRGQLP-------------ASIGNLSALQEINVNGNRLGGRI----PSTRSHV  177 (568)
Q Consensus       119 ~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l  177 (568)
                      ...    +...+..+++|++|++++|.+.....             ......+.|+.+.+++|.+....    ...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            432    12233345566666666554421000             00123455666666665544211    1122334


Q ss_pred             ccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCCCCC
Q 041497          178 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQ  253 (568)
Q Consensus       178 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~  253 (568)
                      +.|+.|++++|.+.....                  . ..........++|+.|++++|.++..    ....+..+++|+
T Consensus       186 ~~L~~L~L~~n~i~~~g~------------------~-~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGI------------------E-HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             TTCCEEECCSSCCCHHHH------------------H-HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             hhhccccccccccccccc------------------c-cchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            555555555554432100                  0 00111122556677777777765532    223455677788


Q ss_pred             eEecCCCcccccccCCc------cCCCCCcEEECCCCCCCCcCCCCchhhhccc-CCCcccEEEeccCcccCc
Q 041497          254 KLDINRNLFSGKVSINF------GGLQNLSWLNLGKNNLGTRTANDLDFITLLT-NCTKLEVLVLDSNRFGAV  319 (568)
Q Consensus       254 ~L~L~~n~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~  319 (568)
                      +|++++|.+.+.....+      ...+.|++|++++|.+......  .+...+. +++.|+.|++++|++...
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~--~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--TLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--HHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH--HHHHHHHccCCCCCEEECCCCcCCCc
Confidence            88888887764332222      2345688888888876543221  2333343 567888888888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.3e-12  Score=109.24  Aligned_cols=111  Identities=18%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             eEEEccCCcccccCchhhhcCCCCcEEecCCC-cccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCC
Q 041497          447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSN-MFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR  524 (568)
Q Consensus       447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  524 (568)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+..|. +++|+.|++++|+++.+.+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34566666666 44566777788888888766 47655555666 88888888888888877778888888888888888


Q ss_pred             CccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497          525 NNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW  559 (568)
Q Consensus       525 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  559 (568)
                      |.++...+..|.. ..|+.|+|++|++.|.|...|
T Consensus        90 N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~~~  123 (156)
T d2ifga3          90 NALESLSWKTVQG-LSLQELVLSGNPLHCSCALRW  123 (156)
T ss_dssp             SCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGGHH
T ss_pred             CCCcccChhhhcc-ccccccccCCCcccCCchHHH
Confidence            8888665666654 468888888888888876543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=3.4e-13  Score=117.81  Aligned_cols=128  Identities=22%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             CCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceee
Q 041497          418 CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLC  497 (568)
Q Consensus       418 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  497 (568)
                      +++|++|++++|.+...  ..+..+..+ +.|++++|.++ .++.....+++|++|++++|+++ .++....+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~i--~~l~~l~~L-~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEKI--SSLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSGIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESCC--CCHHHHTTC-CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHHHHHHHHSSEEE
T ss_pred             ccccceeECcccCCCCc--ccccCCccc-cChhhcccccc-ccccccccccccccccccccccc-ccccccccccccccc
Confidence            34444444444444321  124444444 55555555555 23333344456777777777766 333222367777777


Q ss_pred             cccccccccCC-ccCcCCCCCCEEeCCCCccccCcCc----------cccccccCCeeecccCccc
Q 041497          498 MQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIPQ----------YLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       498 Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~i~  552 (568)
                      +++|.++.... ..+..+++|+.|++++|++....+.          .+..+|+|+.||  +.+|+
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            77777764321 3567777777777777776543332          155677777765  44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=2.1e-13  Score=119.25  Aligned_cols=109  Identities=21%  Similarity=0.318  Sum_probs=59.3

Q ss_pred             cccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497           53 FVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF  132 (568)
Q Consensus        53 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  132 (568)
                      .+..+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++..+..+++|++|++++|+++.  ...+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~--l~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LSGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC--HHHHHHHHHS
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc--cccccccccc
Confidence            35556666666666666552 22 3555666666666666655 344434444556666666666542  1345555666


Q ss_pred             ceeecccccCCCCCC-cccCCCCCCCeEEeccCCC
Q 041497          133 QLLNIAENHLRGQLP-ASIGNLSALQEINVNGNRL  166 (568)
Q Consensus       133 ~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~  166 (568)
                      ++|++++|.+..... ..+..+++|++|++++|++
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCcc
Confidence            666666665542211 2355556666666665554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.2e-11  Score=97.97  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=52.3

Q ss_pred             eeccCCcccccCCcccCCCCCCcEEeCCCC-cCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeeccccc
Q 041497           63 INLANNSFRAEIPHEVGNLFRLQNLTLTNN-YFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENH  141 (568)
Q Consensus        63 L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  141 (568)
                      ++.+++.+. ..|..+..+++|++|+++++ .++.+.+..|.++++|+.|++++|+++...+.+|..+++|++|+|++|.
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            344443333 23444445555555555443 3443444455555556666665555555555555556666666666665


Q ss_pred             CCCCCCcccCCCCCCCeEEeccCCC
Q 041497          142 LRGQLPASIGNLSALQEINVNGNRL  166 (568)
Q Consensus       142 l~~~~~~~~~~l~~L~~L~l~~~~~  166 (568)
                      +....+..+ ....|++|++++|++
T Consensus        92 l~~l~~~~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LESLSWKTV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred             CcccChhhh-ccccccccccCCCcc
Confidence            553222222 233466666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.1e-08  Score=82.60  Aligned_cols=65  Identities=26%  Similarity=0.250  Sum_probs=31.5

Q ss_pred             CCCCCCcEEeCCCCcCCCCC--CcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCC
Q 041497           79 GNLFRLQNLTLTNNYFSGKI--PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR  143 (568)
Q Consensus        79 ~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~  143 (568)
                      ..++.|++|++++|+++...  +..+..+++|++|++++|.+....+-.+....+|+.|++++|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34555666666666555321  223445555555555555554322222223334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-08  Score=85.19  Aligned_cols=89  Identities=19%  Similarity=0.157  Sum_probs=64.7

Q ss_pred             chhhhcCCCCcEEecCCCcccccC--CCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCc----
Q 041497          461 PAEVGKLKNLVSLDISSNMFSGEI--PTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ----  533 (568)
Q Consensus       461 ~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----  533 (568)
                      ......+++|++|++++|+++...  +..+. +++|+.|+|++|.++...+..+.+...|+.|++++|++.....+    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            345567899999999999998432  23344 89999999999999865443444556799999999999765442    


Q ss_pred             ---cccccccCCeeecccCcc
Q 041497          534 ---YLENLSFLSFLNLSYNHF  551 (568)
Q Consensus       534 ---~~~~l~~L~~L~l~~n~i  551 (568)
                         .+..+|+|+.||  |.++
T Consensus       138 ~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         138 ISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHTTSTTCCEET--TEEC
T ss_pred             HHHHHHHCCCCCEEC--cCCC
Confidence               356778888876  5444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=2.4e-06  Score=71.22  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             hhhhcCCCCcEEecCCCcccccCCCcc----c-ccccceeecccccccccC----CccCcCCCCCCEEeCCCCccccC--
Q 041497          462 AEVGKLKNLVSLDISSNMFSGEIPTTL----G-CTSLEYLCMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSGH--  530 (568)
Q Consensus       462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~----~-~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~--  530 (568)
                      .++...+.|++|++++|.+.......+    . .+.|+.|+|++|.++...    ..++...+.|++|++++|.+...  
T Consensus        38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence            356677889999999998875443333    2 688999999999887533    34677788999999999876543  


Q ss_pred             -----cCccccccccCCeeecccCccc
Q 041497          531 -----IPQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       531 -----~~~~~~~l~~L~~L~l~~n~i~  552 (568)
                           +.+.+...++|+.|+++.+...
T Consensus       118 ~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_         118 QVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHHhCCCccEeeCcCCCch
Confidence                 3455566789999999887543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=7.5e-06  Score=68.06  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             CCCCCceeeccCC-ccccc----CCcccCCCCCCcEEeCCCCcCCC----CCCcccccCCCCcEEeccCCccccc----C
Q 041497           56 NLSFLRSINLANN-SFRAE----IPHEVGNLFRLQNLTLTNNYFSG----KIPTNLSRCSNLVKFEASNNKLAGE----S  122 (568)
Q Consensus        56 ~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~  122 (568)
                      +.++|++|+++++ .+...    +..++...++|++|++++|.++.    .+.+.+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 33322    23345556666666666666542    1222334456666666666665421    1


Q ss_pred             chhhcCcCcCceeeccccc
Q 041497          123 PAEIGNLLKFQLLNIAENH  141 (568)
Q Consensus       123 ~~~~~~l~~L~~L~l~~~~  141 (568)
                      ..++...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2233444555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.17  E-value=3.5e-05  Score=63.82  Aligned_cols=91  Identities=19%  Similarity=0.210  Sum_probs=64.3

Q ss_pred             hhhhcCCCCcEEecCCCcccccCCCcc----c-ccccceeecccccccccC----CccCcCCCCCCEEeC--CCCcccc-
Q 041497          462 AEVGKLKNLVSLDISSNMFSGEIPTTL----G-CTSLEYLCMQDNSFTGSI----PSTLSSLKSITELDL--SRNNLSG-  529 (568)
Q Consensus       462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~----~-~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l--~~n~l~~-  529 (568)
                      .++...++|++|++++|.++......+    . .++++.+++++|.++...    ...+...+.|+.+++  ++|.+.. 
T Consensus        40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~  119 (166)
T d1io0a_          40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  119 (166)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence            355677889999999998764433322    2 788999999998876432    356677788987655  4566754 


Q ss_pred             ---CcCccccccccCCeeecccCccc
Q 041497          530 ---HIPQYLENLSFLSFLNLSYNHFE  552 (568)
Q Consensus       530 ---~~~~~~~~l~~L~~L~l~~n~i~  552 (568)
                         .+.+.+...++|+.|+++.+...
T Consensus       120 ~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         120 VEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence               34556678899999999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=2.8e-05  Score=64.47  Aligned_cols=65  Identities=12%  Similarity=0.146  Sum_probs=33.1

Q ss_pred             cCCCCCceeeccC-Cccccc----CCcccCCCCCCcEEeCCCCcCCCCC----CcccccCCCCcEEeccCCccc
Q 041497           55 GNLSFLRSINLAN-NSFRAE----IPHEVGNLFRLQNLTLTNNYFSGKI----PTNLSRCSNLVKFEASNNKLA  119 (568)
Q Consensus        55 ~~~~~L~~L~ls~-~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~  119 (568)
                      .+.+.|++|++++ +.++..    +-.++...++|++|++++|.++...    .+.+...+.++.+++.+|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3445666666665 333322    2333445666666666666554221    122344556666666665543