Citrus Sinensis ID: 041509
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | ||||||
| 224120226 | 218 | predicted protein [Populus trichocarpa] | 1.0 | 0.967 | 0.756 | 8e-90 | |
| 225455533 | 219 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.963 | 0.767 | 3e-89 | |
| 224136790 | 218 | predicted protein [Populus trichocarpa] | 1.0 | 0.967 | 0.775 | 4e-83 | |
| 388522455 | 226 | unknown [Lotus japonicus] | 1.0 | 0.933 | 0.672 | 3e-76 | |
| 255539703 | 206 | conserved hypothetical protein [Ricinus | 0.914 | 0.936 | 0.708 | 1e-75 | |
| 356576563 | 223 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.946 | 0.668 | 3e-75 | |
| 356530959 | 222 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.945 | 0.663 | 5e-75 | |
| 356535312 | 224 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.941 | 0.660 | 8e-75 | |
| 255648119 | 224 | unknown [Glycine max] | 1.0 | 0.941 | 0.660 | 2e-74 | |
| 357504103 | 222 | hypothetical protein MTR_7g034710 [Medic | 0.985 | 0.936 | 0.635 | 7e-74 |
| >gi|224120226|ref|XP_002318277.1| predicted protein [Populus trichocarpa] gi|222858950|gb|EEE96497.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 165/218 (75%), Positives = 184/218 (84%), Gaps = 7/218 (3%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
M WSAENAT AYLKTL+MGQ+A EP+ AEFISALAAGNNAQLMVVACAN A T+L L
Sbjct: 1 MGYWSAENATNAYLKTLRMGQRANEPDVAEFISALAAGNNAQLMVVACANAAATTSLTLV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120
AAAHQTGGRVVCIL +E +LSKKILG DA HVEFVIG+AQSLLL+H+ EADFVLIDCN
Sbjct: 61 AAAHQTGGRVVCILPGHQELQLSKKILGYDACHVEFVIGEAQSLLLTHYSEADFVLIDCN 120
Query: 121 LENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSWRSSGSKSQLLPIGEGLLVTRIAAASA- 179
LENHE +L +VQA K NGAVVVGYNAF KGSWRS GSK+QLLPIG GLLVTRI+A++
Sbjct: 121 LENHEAILGSVQARKKRNGAVVVGYNAFSKGSWRSGGSKTQLLPIGGGLLVTRISASAKI 180
Query: 180 ------NKKSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
K+SHW+VKVD+CTGEEHVFRVRFPQGKQI+A
Sbjct: 181 ADGCGHGKRSHWVVKVDECTGEEHVFRVRFPQGKQIEA 218
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455533|ref|XP_002266318.1| PREDICTED: uncharacterized protein LOC100265251 [Vitis vinifera] gi|296084137|emb|CBI24525.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/219 (76%), Positives = 190/219 (86%), Gaps = 8/219 (3%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMG +AKEP+ AEFISALAAGNNAQLMVVACA+V ++T LALA
Sbjct: 1 MACWSAENATKAYLSTLKMGHRAKEPDVAEFISALAAGNNAQLMVVACASVTSSTALALA 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120
AAAHQTGGRVVCILR +EE SK +LGLDA H+EFV+G+AQ+LLL+ + EADFVLIDCN
Sbjct: 61 AAAHQTGGRVVCILRGLEELHSSKMLLGLDACHIEFVVGEAQTLLLNDYMEADFVLIDCN 120
Query: 121 LENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSWRSSGSKSQLLPIGEGLLVTRIAA---- 176
LENHEG+LRAVQAG KPNGAVV+GYNAF KG+WR +GSK+QLLPIGEGLLVTRI A
Sbjct: 121 LENHEGILRAVQAGGKPNGAVVIGYNAFGKGTWRVNGSKTQLLPIGEGLLVTRIGAKAKV 180
Query: 177 ----ASANKKSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
K+SHW+VKVDKCTGEEHVFRVRFPQGK+I+A
Sbjct: 181 NGSCGGVGKRSHWVVKVDKCTGEEHVFRVRFPQGKRIEA 219
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136790|ref|XP_002322416.1| predicted protein [Populus trichocarpa] gi|222869412|gb|EEF06543.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/218 (77%), Positives = 185/218 (84%), Gaps = 7/218 (3%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
M WSAENATKAYLKTL+MGQKA EP+EAEFISALAAGNNAQLMVVACAN A TT+AL
Sbjct: 1 MGYWSAENATKAYLKTLRMGQKANEPDEAEFISALAAGNNAQLMVVACANAATTTTVALV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120
AAAHQTGGRVVCIL +E +LSKKILG DA HVEFVIG+A+SLLLSH+ EADFVLIDCN
Sbjct: 61 AAAHQTGGRVVCILPGHQELQLSKKILGCDACHVEFVIGEARSLLLSHYSEADFVLIDCN 120
Query: 121 LENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSWRSSGSKSQLLPIGEGLLVTRIA----- 175
LENH+G+L AV+AG K NGAV+VGYNAF K SWRS GSK+QLLPIG GLLVTRIA
Sbjct: 121 LENHDGILGAVRAGRKRNGAVIVGYNAFSKRSWRSGGSKTQLLPIGGGLLVTRIATDAKI 180
Query: 176 --AASANKKSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
K+SHW+VKVDKCTGEEHVFRVRFPQGKQI+A
Sbjct: 181 ADGCGCGKRSHWVVKVDKCTGEEHVFRVRFPQGKQIEA 218
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388522455|gb|AFK49289.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/226 (67%), Positives = 175/226 (77%), Gaps = 15/226 (6%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMGQKAKEPN AEFISALAAGNNAQLMVVACA+ A++ TLAL
Sbjct: 1 MACWSAENATKAYLNTLKMGQKAKEPNVAEFISALAAGNNAQLMVVACASAADSNTLALV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDC 119
AAAHQTGG+V+CI+ EE SK LG+ + HV+F++G+AQ LLLS F ADF++IDC
Sbjct: 61 AAAHQTGGKVICIVSGHEELNASKIALGVASHHVQFMVGEAQKLLLSDKFVAADFLVIDC 120
Query: 120 NLENHEGVLRAVQAGNK-PNGAVVVGYNAFR-KGSWRS---SGSKSQLLPIGEGLLVTRI 174
NLENHE +L+AVQ G++ NG VVVGYNAF +GSW S S +K+QLLPIGEGLLVTR
Sbjct: 121 NLENHEEILKAVQEGSREKNGTVVVGYNAFSCRGSWLSSCGSKTKTQLLPIGEGLLVTRF 180
Query: 175 AAAS---------ANKKSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
+ KS W+VKVDKCTGEEHVFRVRFP GK IQA
Sbjct: 181 GVSDNSPKHGSKMGKMKSRWVVKVDKCTGEEHVFRVRFPHGKVIQA 226
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539703|ref|XP_002510916.1| conserved hypothetical protein [Ricinus communis] gi|223550031|gb|EEF51518.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 169/206 (82%), Gaps = 13/206 (6%)
Query: 19 MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE 78
MGQKAKEP+ AEFISALAAGNNAQLMVVACA+ A +T LAL AAAHQTGGRV+C+LR E
Sbjct: 1 MGQKAKEPDVAEFISALAAGNNAQLMVVACASSAASTVLALVAAAHQTGGRVICVLRGHE 60
Query: 79 EYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGN--K 136
E + ++ LG+DA HV+FVIG+AQ+LLL+H+ EADFVL+DCNLENHEG+L AV+ + K
Sbjct: 61 ELESLRQCLGIDACHVQFVIGEAQNLLLTHYSEADFVLVDCNLENHEGILAAVEGSSRRK 120
Query: 137 PNGAVVVGYNAFRKGSWRSSGSKSQLLPIGEGLLVTRIAAAS----------ANKKSHWI 186
NGAVVVGYNAF KGSW SS +K+QLLPIGEGLLVTRIAA+ K SHW+
Sbjct: 121 RNGAVVVGYNAFTKGSWWSSRAKTQLLPIGEGLLVTRIAASGRIHRSSSCGHGKKSSHWV 180
Query: 187 VKVDKCTGEEHVFRVR-FPQGKQIQA 211
VKVDKCTGEEHVFRVR FPQGKQI+A
Sbjct: 181 VKVDKCTGEEHVFRVRSFPQGKQIEA 206
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576563|ref|XP_003556400.1| PREDICTED: uncharacterized protein LOC100816283 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 171/223 (76%), Gaps = 12/223 (5%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMGQK KEP+ AEFISALAAGNNAQLMVVAC A++TTLAL
Sbjct: 1 MACWSAENATKAYLSTLKMGQKCKEPDVAEFISALAAGNNAQLMVVACGGAADSTTLALV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASH-VEFVIGDAQSLLLSHFRE-ADFVLID 118
AAHQTGG+V+CI+ EE + SK LG ASH V+F++G+AQ +LL H+ + ADFVLID
Sbjct: 61 TAAHQTGGQVICIVPGHEELRASKIALGRMASHQVQFMVGEAQEVLLEHYDQAADFVLID 120
Query: 119 CNLENHEGVLRAVQAGNKPNGAVVVGYNAFR-KGSWRSSGSKSQLLPIGEGLLVTRIAAA 177
CNLENHE +LRAVQ G K NG VVVGYNAF + S + GSK+QLLPIG GLLVTR +
Sbjct: 121 CNLENHEEILRAVQEGRKQNGTVVVGYNAFSCRKSCLACGSKTQLLPIGGGLLVTRFGVS 180
Query: 178 SANK---------KSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
+ KS W+VKVDKCTGEEHVFRVRFPQ K +QA
Sbjct: 181 ETSPKYGSRMGKAKSRWVVKVDKCTGEEHVFRVRFPQRKVVQA 223
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530959|ref|XP_003534046.1| PREDICTED: uncharacterized protein LOC100805528 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/223 (66%), Positives = 171/223 (76%), Gaps = 13/223 (5%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMGQKAKEP AEFISALAAGNNAQLMVVACA A++TTLAL
Sbjct: 1 MACWSAENATKAYLNTLKMGQKAKEPAVAEFISALAAGNNAQLMVVACAGAADSTTLALV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKIL-GLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119
AAHQTGG VVCI+ R E+ SKK+L G++AS V+F++G+AQ L+ +ADFVLIDC
Sbjct: 61 TAAHQTGGHVVCIVPRHEDLSASKKVLIGVNASQVQFMVGEAQQELV-MLSQADFVLIDC 119
Query: 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR-KGSWRSSGSKSQLLPIGEGLLVTRIAAA- 177
NL NH +++A+Q G NG VVVGYNA +GSW S GSK+QLLPIG+GLLVTR A+
Sbjct: 120 NLVNHGEIVKAIQVGGMQNGTVVVGYNALNCRGSWWSCGSKTQLLPIGKGLLVTRSGASA 179
Query: 178 ---------SANKKSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
S K S WIVKVDKCTGEEHV+R+R PQGK IQA
Sbjct: 180 TSPKYGSEMSKTKSSRWIVKVDKCTGEEHVYRIRVPQGKVIQA 222
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535312|ref|XP_003536191.1| PREDICTED: uncharacterized protein LOC100775961 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 172/224 (76%), Gaps = 13/224 (5%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMGQK KEP+ AEFISALAAGNNAQLMVVAC A++TTLAL
Sbjct: 1 MACWSAENATKAYLSTLKMGQKCKEPDVAEFISALAAGNNAQLMVVACGGAADSTTLALV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASH-VEFVIGDAQSLLLSHFRE-ADFVLID 118
AAA+QTGG+V+CI+ EE + SK +G ASH V+F++G+AQ +LL H+ + ADFVLID
Sbjct: 61 AAANQTGGKVICIVPSHEELRASKISMGRMASHQVQFMVGEAQEVLLEHYDQAADFVLID 120
Query: 119 CNLENHEGVLRAVQAGNKPNGAVVVGYNAFR-KGSWRSSGSKSQLLPIGEGLLVTRIAAA 177
CNLENHE +LRAVQ G K NG VVVGYNAF + S + GSK+QLLPIG GLLVTR +
Sbjct: 121 CNLENHEEILRAVQEGRKQNGTVVVGYNAFSCRKSCLACGSKTQLLPIGGGLLVTRFGVS 180
Query: 178 SANK----------KSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
+ KS W+VKVDKCTGEEHVFRVRFPQ K +QA
Sbjct: 181 ETSPKYGNRIMGKVKSRWVVKVDKCTGEEHVFRVRFPQRKVVQA 224
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255648119|gb|ACU24514.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 171/224 (76%), Gaps = 13/224 (5%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMGQK KEP+ AEFISALAAGNNAQLMVVAC A++TTLAL
Sbjct: 1 MACWSAENATKAYLSTLKMGQKCKEPDVAEFISALAAGNNAQLMVVACGGAADSTTLALV 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASH-VEFVIGDAQSLLLSHFRE-ADFVLID 118
AAA+QTGG+V+CI+ EE + SK +G ASH V+F++G AQ +LL H+ + ADFVLID
Sbjct: 61 AAANQTGGKVICIVPSHEELRASKISMGRMASHQVQFMVGGAQEVLLEHYDQAADFVLID 120
Query: 119 CNLENHEGVLRAVQAGNKPNGAVVVGYNAFR-KGSWRSSGSKSQLLPIGEGLLVTRIAAA 177
CNLENHE +LRAVQ G K NG VVVGYNAF + S + GSK+QLLPIG GLLVTR +
Sbjct: 121 CNLENHEEILRAVQEGRKQNGTVVVGYNAFSCRKSCLACGSKTQLLPIGGGLLVTRFGVS 180
Query: 178 SANK----------KSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
+ KS W+VKVDKCTGEEHVFRVRFPQ K +QA
Sbjct: 181 ETSPKYGNRIMGKVKSRWVVKVDKCTGEEHVFRVRFPQRKVVQA 224
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504103|ref|XP_003622340.1| hypothetical protein MTR_7g034710 [Medicago truncatula] gi|217071496|gb|ACJ84108.1| unknown [Medicago truncatula] gi|355497355|gb|AES78558.1| hypothetical protein MTR_7g034710 [Medicago truncatula] gi|388491994|gb|AFK34063.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 143/225 (63%), Positives = 170/225 (75%), Gaps = 17/225 (7%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALA 60
MACWSAENATKAYL TLKMGQKAKEPN AEFISALAAGNNAQ+M+VACANVA++TTLAL
Sbjct: 1 MACWSAENATKAYLSTLKMGQKAKEPNVAEFISALAAGNNAQMMIVACANVADSTTLALI 60
Query: 61 AAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-LLLSHFREADFVLIDC 119
AAA+QTGG+V+CI+ ++ SK +LG+ + V+F++G AQ L+L + ADF+LIDC
Sbjct: 61 AAANQTGGQVICIVPNHKDLIASKHVLGIASHQVQFMVGKAQEVLMLDQYEAADFLLIDC 120
Query: 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR-KGSWRSSGSKSQLLPIGEGLLVTRIAAAS 178
N++NHE +L+ +Q G N VVGYN F KGSW S GSK+QLLPIGEGLLVTR +
Sbjct: 121 NIKNHEEILKTIQEGRNVN---VVGYNGFSCKGSWLSCGSKTQLLPIGEGLLVTRFGISE 177
Query: 179 ANK------------KSHWIVKVDKCTGEEHVFRVRFPQGKQIQA 211
N KS W+VKVDKCTGEEHVFRVRFP GK IQA
Sbjct: 178 NNSPRYGTSRSMGKIKSRWVVKVDKCTGEEHVFRVRFPHGKVIQA 222
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | ||||||
| TAIR|locus:2167913 | 236 | AT5G62280 "AT5G62280" [Arabido | 0.824 | 0.737 | 0.475 | 3.5e-36 | |
| TAIR|locus:2050842 | 215 | AT2G45360 "AT2G45360" [Arabido | 0.909 | 0.893 | 0.320 | 9.5e-18 | |
| TAIR|locus:2034645 | 212 | AT1G12320 "AT1G12320" [Arabido | 0.928 | 0.924 | 0.271 | 2.9e-16 | |
| TAIR|locus:2101911 | 218 | AT3G60780 "AT3G60780" [Arabido | 0.924 | 0.894 | 0.260 | 5e-12 | |
| TAIR|locus:2026202 | 224 | AT1G62840 "AT1G62840" [Arabido | 0.843 | 0.794 | 0.269 | 5.2e-10 |
| TAIR|locus:2167913 AT5G62280 "AT5G62280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 89/187 (47%), Positives = 116/187 (62%)
Query: 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQ-LMVXXXXXXXXXXXXXX 59
MA WSAENATKAYL TLK Q+ KEPN AEFISALAAGN+A+ + V
Sbjct: 1 MAFWSAENATKAYLSTLKTDQRTKEPNVAEFISALAAGNSARKIAVACAGAANADILVAL 60
Query: 60 XXXXHQTGGRVVCILRRVEEYKLSKKILGLDASH-VEFVIGDAQ--SLLLSHFREADFVL 116
+QT G+VVC+LR +EE +S+K+L H ++FV+G++ +L+ +HF EADFVL
Sbjct: 61 IAAANQTRGQVVCVLRGIEELIISQKMLEPSEIHQIQFVVGESNDDTLINNHFGEADFVL 120
Query: 117 IDCNLENHEGVLRAVQAGNKPNG--------AVVVGYNAFXXXX-XXXXXXXXQLLPIGE 167
+DCNLENH+ ++ + ++ N AVVVGYNAF Q LPIGE
Sbjct: 121 VDCNLENHQEIVGKILNHHEENARTGGGSGVAVVVGYNAFSRGSWRFSDGRKTQFLPIGE 180
Query: 168 GLLVTRI 174
GLLVTR+
Sbjct: 181 GLLVTRV 187
|
|
| TAIR|locus:2050842 AT2G45360 "AT2G45360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 69/215 (32%), Positives = 96/215 (44%)
Query: 4 WSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVXXXXXXX-XXXXXXXXXX 62
WS E A+ AY+ T+K + KE AEF+SA AAG NA+L+V
Sbjct: 5 WSPETASDAYIDTVKSCKSDKESGVAEFLSATAAGWNARLIVETWSRGDPITTSVGLAVA 64
Query: 63 XHQTGGRVVCILRRVE---EYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119
TGGR VCI+ + EY L+ + G + V V+G++ + F DF+++D
Sbjct: 65 ATHTGGRHVCIVPDEQSKLEYVLAMR--GFVTTEV-VVVGESVENTMEEFPGVDFLVVDS 121
Query: 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFXXXXXX----------XXXXXXQLLPIGEGL 169
LR + NK GAV+V NA LP+G GL
Sbjct: 122 KRREFVRTLRFAKLSNK--GAVLVCKNAMHRAISGFKWHDVLKRGTRVVRSVFLPVGSGL 179
Query: 170 LVTRIAAA----SANKKSHWIVKVDKCTGEEHVFR 200
+ + A S N +S WI VD +GEEH+FR
Sbjct: 180 DIVHVGATGRGDSRNLRSRWIRHVDHLSGEEHLFR 214
|
|
| TAIR|locus:2034645 AT1G12320 "AT1G12320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 57/210 (27%), Positives = 94/210 (44%)
Query: 4 WSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVXX-XXXXXXXXXXXXXXX 62
WS E A+KAY+ T+K + + P+ AE I+A+AAG N +L+V
Sbjct: 5 WSPETASKAYIDTVKSCENLETPDAAELIAAMAAGWNVKLIVETWSEGDAIASSIGLNVA 64
Query: 63 XHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF---VIGDAQSLLLSHFREADFVLIDC 119
+ +CI++ + + +S + F ++ + + + DF+++D
Sbjct: 65 SKHANAKHICIVQNSRSESAYLQAIQESSSPLNFPETIVAEEPGKAMKKLQGVDFLVVDW 124
Query: 120 -NLENHEGVLRAVQAGNKPNGAVVV---GYNAFXXXXXXXXXXXXQLLPIGEGLLVTRIA 175
N E L+ GN+ GAVVV GY++ LP+ G+ + +A
Sbjct: 125 RNKEFAAAALKNAAFGNR--GAVVVCRNGYSSLRRVLRDRKVVRTVTLPVTGGIEIAHVA 182
Query: 176 AA----SANKKSHWIVKVDKCTGEEHVFRV 201
A S N K WI VD+ +GEEHVF +
Sbjct: 183 ARNSGKSGNNKRRWITHVDQRSGEEHVFSI 212
|
|
| TAIR|locus:2101911 AT3G60780 "AT3G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 56/215 (26%), Positives = 92/215 (42%)
Query: 4 WSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVXXXXXXX-XXXXXXXXXX 62
WS E A+ AY+ T++ + ++ + AEF+SA AAG N +L+V
Sbjct: 5 WSPETASNAYIHTVRSCKSYRDSSVAEFLSATAAGWNTRLIVETWSRGDPIATSVGLAVA 64
Query: 63 XHQTGGRVVCILRRVEEYKLSKKIL--GLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120
T GR VCI+ E + ++ + + E ++ D+ ++ DF+++D
Sbjct: 65 AIHTCGRHVCIVPDEESRSEYEAVMRGAVTSDSTEVMVLDSAEDVVERISGVDFMVVDS- 123
Query: 121 LENHEGVLRAVQAGNKPNGAVVVGYNAFXXXX----------XXXXXXXXQLLPIGEGLL 170
+ HE V A GAV+V NA LP+G GL
Sbjct: 124 -KRHEFVNALGLAKTSKMGAVLVCKNATLKSIPGFKWQGLLRRGTRVVRSVFLPVGRGLE 182
Query: 171 VTRIAAASAN---KK--SHWIVKVDKCTGEEHVFR 200
+ + A+ +K S WI +D +GEEH+F+
Sbjct: 183 IVHVGASGGGNGLRKIPSRWIKHIDPRSGEEHLFK 217
|
|
| TAIR|locus:2026202 AT1G62840 "AT1G62840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 53/197 (26%), Positives = 87/197 (44%)
Query: 4 WSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVXX-XXXXXXXXXXXXXXX 62
WS E A+KAY+ T+K + P AE ++A+AAG NA L+V
Sbjct: 5 WSPETASKAYIDTVKSCENLGTPGAAELVAAMAAGWNANLIVETWSEGETIAISVGLNIA 64
Query: 63 XHQTGGRVVCILRRVEEYKLSKKILGLDA-SHV-EFVIGDAQSLLLSHFREA----DFVL 116
T GR +CI+ + + + S++ E +I + + L H + DF++
Sbjct: 65 SRHTNGRHICIVPNARSQTAYLQAMAEQSCSNLPETIIMNEEGEELEHTMQTLQGIDFLV 124
Query: 117 IDCNLENHEG-VLRAVQAGNKPNGAVVV---GYN------AFXXXXXXXXXXXXQLLPIG 166
+D + ++ VLR G++ GAVVV GY ++ LP+
Sbjct: 125 VDWDQKDFAANVLRNAVFGSR--GAVVVCRSGYRRSTSCFSWTKAFSDRNVVRTVTLPVS 182
Query: 167 EGLLVTRIAAASANKKS 183
GL + +AAA ++ KS
Sbjct: 183 GGLEIAHVAAARSSGKS 199
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 211 181 0.00095 109 3 11 22 0.41 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 597 (63 KB)
Total size of DFA: 153 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.23u 0.08s 13.31t Elapsed: 00:00:08
Total cpu time: 13.23u 0.08s 13.31t Elapsed: 00:00:08
Start: Fri May 10 17:01:18 2013 End: Fri May 10 17:01:26 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 211 | |||
| pfam07279 | 218 | pfam07279, DUF1442, Protein of unknown function (D | 2e-27 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 6e-07 |
| >gnl|CDD|115904 pfam07279, DUF1442, Protein of unknown function (DUF1442) | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-27
Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 28/219 (12%)
Query: 4 WSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACAN-VANATTLALAAA 62
WS E A+KAY+ T+K + P AE ++A+AAG NA+L+V + AT++ L A
Sbjct: 5 WSPETASKAYIDTVKSCENLGTPGAAELLAAMAAGWNARLIVETWSEGDPIATSVGLNVA 64
Query: 63 AHQTGGRVVCIL---RRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSHFREADFVLID 118
+ T GR +CI+ R Y + + S++ E ++G+ + + DF+++D
Sbjct: 65 SRHTNGRHICIVPNERSQSAYLQA--MREQSTSNLPETIVGEELEHTMETLQGVDFLVVD 122
Query: 119 CNLENHE---GVLRAVQAGNKPNGAVVVGYNAFRKG----SWRS--SGSK---SQLLPIG 166
+ E LR + GN+ GAVVV N +R+ SW + + LP+G
Sbjct: 123 W--KRKEFAANALRNAKFGNR--GAVVVCRNGYRRSISGFSWTKVLRDRRVVRTVTLPVG 178
Query: 167 EGLLVTRIAAA-----SANKKSHWIVKVDKCTGEEHVFR 200
GL + +AAA S N K WI VD+ +GEEHVFR
Sbjct: 179 GGLEIAHVAAAGSGGSSNNNKRRWIKHVDQRSGEEHVFR 217
|
This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown. Length = 218 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 32/183 (17%)
Query: 19 MGQKAKEPNEAEFISALAAGNNAQLMV-VACANVANATTLALAAAAHQTGGRVVCILRRV 77
G +P + LA + + ++ + A +A +ALA GR+ I R
Sbjct: 38 NGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDD---GRLTTIERDE 94
Query: 78 EEYKLSKKIL---GLDASHVEFVIGDAQSLLLSHFREA-DFVLIDCNLENHEGVLRAVQA 133
E +++++ L G+D + GDA +L + D V ID + ++ L
Sbjct: 95 ERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALP 154
Query: 134 GNKPNGAVVVGYNAFRKGSWRSSGSKSQ-----------------------LLPIGEGLL 170
+P G ++V N G + LLP+G+GLL
Sbjct: 155 LLRP-GGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLL 213
Query: 171 VTR 173
++R
Sbjct: 214 LSR 216
|
Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 100.0 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 100.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 100.0 | |
| PLN02476 | 278 | O-methyltransferase | 100.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.98 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.97 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.72 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.71 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.71 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.7 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.7 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.69 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.66 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.66 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.65 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.65 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.65 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.65 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.65 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.64 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.64 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.62 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.62 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.62 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.6 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.57 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 99.57 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.55 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.53 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.53 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.53 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.52 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.51 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.5 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.49 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.48 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.48 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.48 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.48 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.47 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.47 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.46 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.45 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.45 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.44 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.44 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.44 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.43 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.43 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| PLN02366 | 308 | spermidine synthase | 99.41 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.4 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.39 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.39 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.38 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.38 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.37 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.37 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.36 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.36 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.35 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.35 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.35 | |
| PLN02823 | 336 | spermine synthase | 99.34 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.34 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.34 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.34 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.34 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.34 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.34 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.34 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.33 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.33 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.32 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.32 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.31 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.31 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.31 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.31 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.3 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.3 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.29 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.29 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.28 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.28 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.28 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.28 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.28 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.27 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.27 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.27 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.26 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.26 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.25 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.25 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.25 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.23 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.22 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.22 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.21 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.21 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.19 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.19 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.18 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.18 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.18 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.17 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.17 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.17 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.17 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.16 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.16 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.15 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.14 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.14 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.13 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.13 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.11 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.11 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.1 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.1 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.09 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.08 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.08 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.07 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.07 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.06 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.06 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.06 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.06 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.05 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.05 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.04 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 99.04 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.03 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.01 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.01 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.01 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.0 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.99 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.98 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.96 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.96 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.94 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.93 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.92 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.91 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.89 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.88 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.85 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.83 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 98.83 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.81 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.81 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.81 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.79 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.79 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.79 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.76 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.75 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.75 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.72 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.69 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.67 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.67 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.67 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.65 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.61 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.61 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.59 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.59 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.58 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.58 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.56 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.55 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.52 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.52 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.51 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.51 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.51 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.45 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.43 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.43 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.42 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.41 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.38 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.35 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.33 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.33 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.3 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.3 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.28 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.27 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.24 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.23 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.21 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.12 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.11 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.08 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.02 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.01 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.0 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.99 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.95 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.91 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.82 | |
| PHA01634 | 156 | hypothetical protein | 97.8 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 97.79 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.78 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.75 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.74 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.74 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.73 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.68 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.66 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.62 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.6 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.6 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.57 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.55 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.54 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.54 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.53 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.51 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.49 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.47 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.45 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.42 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.39 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.38 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.35 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.35 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.28 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 97.26 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.18 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.16 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.12 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.1 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.07 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.04 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.91 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.9 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.89 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.84 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.74 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.7 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.69 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.69 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.68 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.63 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.61 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.57 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.53 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.51 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.45 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.4 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.28 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.23 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.15 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 96.14 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.13 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.12 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.09 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.99 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.88 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.87 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.81 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.75 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.68 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.59 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.59 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.53 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.52 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.5 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.44 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.4 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.4 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 95.33 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 95.26 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.14 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.11 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.1 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.06 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.97 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 94.94 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.93 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.91 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.84 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.8 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 94.64 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.57 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.51 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.38 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.26 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.21 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 94.18 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.01 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.99 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 93.9 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.87 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.77 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 93.75 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.74 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.66 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 93.52 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 93.42 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.4 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 93.31 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.3 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 93.27 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.22 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 93.12 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.1 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 93.07 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 92.94 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 92.91 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 92.79 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 92.74 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 92.74 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 92.71 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 92.7 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.61 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 92.58 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 92.49 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 92.34 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 92.19 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 92.18 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.13 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.08 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.96 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 91.94 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 91.83 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 91.82 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 91.81 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 91.71 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 91.63 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.49 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.48 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 91.36 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 91.26 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.05 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 91.04 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 91.04 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 91.02 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.96 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 90.8 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 90.79 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 90.66 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 90.59 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.49 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 90.46 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 90.39 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 90.39 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 90.38 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 90.26 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 90.24 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.19 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 90.18 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.14 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 90.1 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 90.1 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 90.1 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 90.09 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 90.03 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 90.03 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 89.88 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 89.86 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 89.85 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 89.85 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.84 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 89.81 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 89.6 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 89.53 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 89.49 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 89.4 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 89.39 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 89.35 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 89.29 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.24 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 89.2 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 89.18 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 89.18 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.17 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 89.15 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 89.07 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 88.94 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 88.86 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 88.86 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 88.83 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 88.81 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 88.78 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 88.65 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 88.61 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.6 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 88.55 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 88.48 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 88.29 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 88.25 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 88.19 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 88.12 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 88.06 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 88.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 87.96 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 87.91 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.9 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 87.84 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.82 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 87.8 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 87.68 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.66 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 87.62 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 87.61 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 87.56 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 87.5 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 87.47 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 87.36 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 87.31 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 87.29 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 87.23 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 87.18 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 87.09 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 87.06 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 87.03 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 86.98 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 86.89 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 86.82 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.78 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 86.76 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 86.7 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 86.64 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 86.61 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.6 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 86.55 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 86.52 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 86.46 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 86.41 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 86.37 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 86.31 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 86.29 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 86.2 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 86.17 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 86.16 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 86.08 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 86.03 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 86.02 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 85.99 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 85.82 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 85.75 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 85.66 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 85.6 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 85.58 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 85.55 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 85.49 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 85.31 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.17 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 85.12 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 85.08 | |
| PLN02256 | 304 | arogenate dehydrogenase | 84.96 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 84.91 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 84.86 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 84.84 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 84.83 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 84.77 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 84.77 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 84.75 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 84.74 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 84.72 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 84.68 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 84.66 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 84.59 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 84.5 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 84.49 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 84.49 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 84.48 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 84.34 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 84.31 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 84.25 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 84.22 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.19 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 84.14 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.98 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 83.96 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 83.94 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 83.91 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 83.87 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 83.85 |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=270.84 Aligned_cols=196 Identities=56% Similarity=0.820 Sum_probs=172.4
Q ss_pred CcCChhHHHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEcccc--HHHHHHHHHHHccCCCcEEEEEeCChhH
Q 041509 2 ACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANV--ANATTLALAAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 2 ~~~~~~~~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg--~G~stl~la~a~~~~~g~v~tiE~~~~~ 79 (211)
.+||||++++|||+++++++...+|..+|||++|+++++++.|+|+ .+. ...+|+.||.|+++++|+++||..+++.
T Consensus 3 l~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~-~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~ 81 (218)
T PF07279_consen 3 LVWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEA-WSSGGAISTTIALAAAARQTGGRHVCIVPDEQS 81 (218)
T ss_pred ceeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEE-ecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh
Confidence 4799999999999999999999999999999999999999999999 343 3357999999999999999999999999
Q ss_pred HHHHHHHhc--CCCCcEEEEEcch-HHHhhhccCCccEEEEcCCcCcHH-HHHHHHHhcCCCCcEEEEEecCCCCC----
Q 041509 80 YKLSKKILG--LDASHVEFVIGDA-QSLLLSHFREADFVLIDCNLENHE-GVLRAVQAGNKPNGAVVVGYNAFRKG---- 151 (211)
Q Consensus 80 ~~~Ar~~~~--~~~~~V~~~~gda-~e~l~~l~~~fD~VfiD~~~~~y~-~~l~~~~~~L~pgG~viv~dn~~~~~---- 151 (211)
....++.+. +..+.++|+.|++ .++++. ...+||+++|+..++|. ++|+.+. +.|.|.|+|++|++.++
T Consensus 82 ~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~ 158 (218)
T PF07279_consen 82 LSEYKKALGEAGLSDVVEFVVGEAPEEVMPG-LKGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGF 158 (218)
T ss_pred HHHHHHHHhhccccccceEEecCCHHHHHhh-ccCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEEeccccCCcCCc
Confidence 888888887 6677899999995 557765 57899999999999998 8888765 56789999999999854
Q ss_pred cee-----cCCCcEEEeecCCcEEEEEEeccC-----CCCccceEEeccccCCceeeEEe
Q 041509 152 SWR-----SSGSKSQLLPIGEGLLVTRIAAAS-----ANKKSHWIVKVDKCTGEEHVFRV 201 (211)
Q Consensus 152 ~~~-----~~~~~~v~lpig~Gl~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.|. .+.+++++||||.||+|++....+ ++.++|||+|+|++||||||||.
T Consensus 159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~ig~~~~~~~~~~~~srWi~~vD~~sGEeHv~R~ 218 (218)
T PF07279_consen 159 SWRSVLRGRRVVRSVFLPIGKGLEVTRIGASGGSNSSRRKKSRWIKHVDQCSGEEHVFRR 218 (218)
T ss_pred cHHHhcCCCCceeEEEeccCCCeEEEEEeecCCCCCCCCCCccceEeeccCCCceeeecC
Confidence 454 366899999999999999999864 44789999999999999999994
|
The function of this family is unknown. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=253.34 Aligned_cols=152 Identities=23% Similarity=0.327 Sum_probs=135.9
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
...++|.+|+||..+++..+|++|||| ||++||||+|||+++++ +|+|+|||.+|+.++.|+++++ ++.++|+++.
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEI-Gt~~GySal~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEI-GTFTGYSALWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEE-STTTSHHHHHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEe-ccccccHHHHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 357889999999999999999999999 99999999999999975 8999999999999999999998 7788999999
Q ss_pred cchHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce--------------------
Q 041509 99 GDAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW-------------------- 153 (211)
Q Consensus 99 gda~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~-------------------- 153 (211)
|||.++++.+ .++|||||+|++|++|.+|++.+.++|+| |+++++||++++|..
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~-ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i 182 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRP-GGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYI 182 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEE-EEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHH
T ss_pred eccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccC-CeEEEEccccccceecCccchhhhHHHHHHHHHHH
Confidence 9999999876 24799999999999999999999999998 557778999998721
Q ss_pred -ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.+|+|++++||+|||++|++|+
T Consensus 183 ~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 183 ANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HH-TTEEEEEECSTTEEEEEEE-
T ss_pred HhCCCeeEEEEEeCCeeEEEEEC
Confidence 2799999999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=243.71 Aligned_cols=150 Identities=23% Similarity=0.357 Sum_probs=138.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE-c
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI-G 99 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~-g 99 (211)
++.|++|+||..+++..++++|||| ||++||||+|||.+++. +|++||||+||++++.|++|++ +..++|+++. |
T Consensus 42 i~~~e~g~~L~~L~~~~~~k~iLEi-GT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 42 IIDPETGALLRLLARLSGPKRILEI-GTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred CCChhHHHHHHHHHHhcCCceEEEe-ecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 5669999999999999999999999 99999999999999986 7899999999999999999998 7888899999 6
Q ss_pred chHHHhhh-ccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc------------------e-----ec
Q 041509 100 DAQSLLLS-HFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS------------------W-----RS 155 (211)
Q Consensus 100 da~e~l~~-l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~------------------~-----~~ 155 (211)
|+.+.+.. +.++||+||+|++|.+|+++++.+.++|+||| ++++||++++|. + .+
T Consensus 120 dal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GG-liv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGG-LIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED 198 (219)
T ss_pred cHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCc-EEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhC
Confidence 99999986 47899999999999999999999999999955 677799999871 0 17
Q ss_pred CCCcEEEeecCCcEEEEEEe
Q 041509 156 SGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 156 ~~~~~v~lpig~Gl~v~~~~ 175 (211)
++++++++|+|||+.+++|.
T Consensus 199 ~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 199 PRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred cCceeEEEecCCceEEEeec
Confidence 99999999999999999985
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=243.14 Aligned_cols=151 Identities=22% Similarity=0.284 Sum_probs=137.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++|.+|+||..+++..+|++|||| ||++||||+|+|.++++ +|+|+|||.+++.++.|+++++ ++.++|+++.||
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEi-GT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEI-GVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEE-eChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc
Confidence 4679999999999999999999999 99999999999999975 8999999999999999999998 778999999999
Q ss_pred hHHHhhhc------cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce---------------------
Q 041509 101 AQSLLLSH------FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW--------------------- 153 (211)
Q Consensus 101 a~e~l~~l------~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~--------------------- 153 (211)
+.+.|+++ .++|||||+|++|.+|.+|++.+.++|+||| ++++||++++|..
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GG-viv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~ 218 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGG-VIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLE 218 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCe-EEEEcCCCCCCcccCccccchhhhHHHHHHHHHH
Confidence 99999876 2699999999999999999999999999955 6777999987620
Q ss_pred ------ecCCCcEEEeecCCcEEEEEEec
Q 041509 154 ------RSSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 154 ------~~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
.+++|+++++|+|||+++++|..
T Consensus 219 fn~~v~~d~~~~~~llPigDGl~l~~k~~ 247 (247)
T PLN02589 219 LNKALAADPRIEICMLPVGDGITLCRRIS 247 (247)
T ss_pred HHHHHHhCCCEEEEEEEeCCccEEEEEeC
Confidence 16889999999999999999863
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=243.98 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=138.2
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++|++++||..+++..++++|||| ||++||||+|+|.++++ +|+|+|+|.++++++.|++|++ |+.++|+++.|
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEI-GT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEV-GVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEe-cCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 46899999999999999999999999 99999999999999975 7899999999999999999998 77889999999
Q ss_pred chHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce---------------------
Q 041509 100 DAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW--------------------- 153 (211)
Q Consensus 100 da~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~--------------------- 153 (211)
|+.+.|+++ .++|||||+|+++++|.+|++.+.++|+||| ++++||++++|..
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GG-vIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~ 256 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGG-VIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLM 256 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCc-EEEEecCccCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999875 3589999999999999999999999999965 5667999998831
Q ss_pred ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.|++++++++|+|||+++++|+
T Consensus 257 ~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 257 DDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred hCCCEEEEEEEeCCeeEEEEEC
Confidence 1799999999999999999974
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=223.85 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=136.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++|.+|+||..+++..++++|||+ |||+|||++|++.+++. +|+|+++|.++++++.|++|++ ++.++|+++.||
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEi-Gt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd 128 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEI-GVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD 128 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEe-cCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc
Confidence 5789999999999999999999999 99999999999999864 7899999999999999999998 777899999999
Q ss_pred hHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce----------------------
Q 041509 101 AQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW---------------------- 153 (211)
Q Consensus 101 a~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~---------------------- 153 (211)
+.+.++.+ .++||+||+|++++.|.++++.+.++|+||| ++++||++++|..
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG-~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~ 207 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGG-IIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFN 207 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCe-EEEEEcCCcCCeecCcccccchhhhHHHHHHHHHH
Confidence 99998765 3689999999999999999999999999966 5677999986610
Q ss_pred ----ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 ----RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 ----~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.+++++++++|+|||+++++|.
T Consensus 208 ~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 208 KLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 1689999999999999999975
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=210.05 Aligned_cols=152 Identities=24% Similarity=0.313 Sum_probs=138.7
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
+..+.|+.+.|+.++++..+|+++||| |++||||++..|.++++ +|+|+|+|+|++.++.+.+..+ +..++|++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lel-GvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLEL-GVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEE-ecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 357999999999999999999999999 99999999999999987 9999999999999999999888 7789999999
Q ss_pred cchHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------e----------
Q 041509 99 GDAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------W---------- 153 (211)
Q Consensus 99 gda~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------~---------- 153 (211)
|++.+.|+++ .++|||+|+|++|.+|.++++.+.+++|+|| |+++||++++|. +
T Consensus 132 g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GG-vi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~ 210 (237)
T KOG1663|consen 132 GPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGG-VIVVDNVLWPGVVADPDVNTPVRGRSIREALNL 210 (237)
T ss_pred cchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhccccc-EEEEeccccCCcccCcccCCCcchhhhhhhhhh
Confidence 9999999876 4689999999999999999999999999955 667799999871 0
Q ss_pred -----ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -----RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -----~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
+|+++....+|+|||+.+.++.
T Consensus 211 n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 211 NKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhHhccCcceeeEeeeccCceeeeccC
Confidence 2788999999999999998863
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=135.14 Aligned_cols=130 Identities=20% Similarity=0.161 Sum_probs=103.2
Q ss_pred hHHHHHHHHH-hh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHH
Q 041509 7 ENATKAYLKT-LK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS 83 (211)
Q Consensus 7 ~~~~~ay~~~-~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~A 83 (211)
.....||.|+ +. .++.+..|.....+..++...++++|||| |||+||.|..||+-. ++|++||++++.++.|
T Consensus 36 ~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEI-GtGsGY~aAvla~l~----~~V~siEr~~~L~~~A 110 (209)
T COG2518 36 AYKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEI-GTGSGYQAAVLARLV----GRVVSIERIEELAEQA 110 (209)
T ss_pred hhhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEE-CCCchHHHHHHHHHh----CeEEEEEEcHHHHHHH
Confidence 3446678775 33 35567788766666666788899999999 999999999999864 6999999999999999
Q ss_pred HHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 84 KKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 84 r~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++|++ ++ .+|.+++||.....+. ..+||.|++.+.....++ .+.+.|+|||.+++--.
T Consensus 111 ~~~L~~lg~-~nV~v~~gDG~~G~~~-~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 111 RRNLETLGY-ENVTVRHGDGSKGWPE-EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHHHcCC-CceEEEECCcccCCCC-CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEEEc
Confidence 99999 54 4599999999988774 689999999998775433 23445667999887554
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-17 Score=134.38 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=102.2
Q ss_pred HHHHHHH-hh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 10 TKAYLKT-LK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 10 ~~ay~~~-~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
..||.|. +. .++.+..|.....+...+...++.+|||| |||+||.|..+++.+.. +++|+++|+++++++.|+++
T Consensus 43 ~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdI-G~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 43 EYAYVDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEI-GTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred hcCcCCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEE-CCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHH
Confidence 3466664 22 23456778877777777777888999999 99999999999988753 68999999999999999999
Q ss_pred hc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 87 LG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 87 ~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++ ...++|++++||+.+..+. .++||.|++++...++. +.+.+.|+|||.+++..
T Consensus 121 l~~~g~~~v~~~~gd~~~~~~~-~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 121 LKKLGYDNVEVIVGDGTLGYEE-NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred HHHcCCCCeEEEECCcccCCCc-CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEEE
Confidence 98 2246899999999876543 57999999998766543 45666789999887754
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=133.76 Aligned_cols=133 Identities=26% Similarity=0.269 Sum_probs=114.6
Q ss_pred HHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 9 ATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 9 ~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
....|+..++...+++.|+-+.++.+.+...++.+|+|. |||+|..|.+||.++.+ .|+|+++|+.+++++.|++|++
T Consensus 63 ~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEA-GtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~ 140 (256)
T COG2519 63 TPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEA-GTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLS 140 (256)
T ss_pred CHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEc-ccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHH
Confidence 345677777767788999999999999999999999999 99999999999999865 7999999999999999999998
Q ss_pred --CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 89 --LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 89 --~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++.++|++..||..+... .+.||.||+|-. +-.++++.+.+.|+|||.+++ .+..
T Consensus 141 ~~~l~d~v~~~~~Dv~~~~~--~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~-y~P~ 197 (256)
T COG2519 141 EFGLGDRVTLKLGDVREGID--EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVV-YSPT 197 (256)
T ss_pred HhccccceEEEecccccccc--ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEE-EcCC
Confidence 777889999999998865 359999999976 356889999999999776554 5443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-17 Score=118.92 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=85.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
|..+|||+ |||+|..++++++.. ++.+|++||.+|++++.|++++. +..++|+++++|+ .......++||+|++
T Consensus 1 p~~~vLDl-GcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDL-GCGTGRLSIALARLF--PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEE-TTTTSHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEE-cCcCCHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 46789999 999999999999854 37899999999999999999994 6679999999999 444444678999999
Q ss_pred cC-CcC------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DC-NLE------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~-~~~------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+. ... +..++++.+.+.|+|||.+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98 322 23567999999999988887743
|
... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=131.15 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=93.1
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
....|.....+..++...+..+|||+ |||+||.+..+++.++. +++|+++|.++++++.|++|++ +..++++++++
T Consensus 54 ~~~~p~~~~~~~~~l~~~~~~~VLDi-G~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 54 TISAPHMVAMMCELIEPRPGMKILEV-GTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred EechHHHHHHHHHhcCCCCCCEEEEE-CcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34455554545455556677899999 99999999999988753 6899999999999999999997 55567999999
Q ss_pred chHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+.+.++. .++||.|++++....+ .+.+.+.|+|||.+++.
T Consensus 132 d~~~~~~~-~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 132 DGKRGLEK-HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP 172 (205)
T ss_pred CcccCCcc-CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence 99876653 5799999999876544 35677889999988764
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=135.78 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=99.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEc
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFVIG 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~g 99 (211)
+.+..+++|..+... +|++|+|| ||| .|+++++++.+..+ +++++++|.|+++.+.||++++ ++.++|+|+.+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldI-GcGpgpltaiilaa~~~p-~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFV-GSGPLPLTSIVLAKHHLP-TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEE-CCCCcHHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC
Confidence 456667788777766 88999999 999 77888888876643 8999999999999999999994 66789999999
Q ss_pred chHHHhhhccCCccEEEEcC----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDC----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+.+..+. .++||+||+++ +++++.++++.+.+.|+|||.+++-
T Consensus 185 Da~~~~~~-l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 185 DVMDVTES-LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred chhhcccc-cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99986432 57899999996 4678999999999999998877663
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=121.75 Aligned_cols=134 Identities=23% Similarity=0.240 Sum_probs=107.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCc
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~f 112 (211)
.-.+..+.++++|| |||||..|+.+|... +.++|++||.++++++..++|.+ ...++++++.|+|.+.|+.+. +|
T Consensus 28 s~L~~~~g~~l~DI-GaGtGsi~iE~a~~~--p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 28 SKLRPRPGDRLWDI-GAGTGSITIEWALAG--PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred HhhCCCCCCEEEEe-CCCccHHHHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CC
Confidence 33467788999999 999999999999543 37999999999999999999998 337899999999999998644 89
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC------c-eecCCC-cEEEeecCCcEEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG------S-WRSSGS-KSQLLPIGEGLLVTRI 174 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~------~-~~~~~~-~~v~lpig~Gl~v~~~ 174 (211)
|.||+.+. ..+.+.++.+...|+|||.+++ |+..-. . +.+-++ +.+.+-+.+|..+...
T Consensus 104 daiFIGGg-~~i~~ile~~~~~l~~ggrlV~--naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~ 170 (187)
T COG2242 104 DAIFIGGG-GNIEEILEAAWERLKPGGRLVA--NAITLETLAKALEALEQLGGREIVQVQISRGKPLGGG 170 (187)
T ss_pred CEEEECCC-CCHHHHHHHHHHHcCcCCeEEE--EeecHHHHHHHHHHHHHcCCceEEEEEeecceeccCe
Confidence 99999999 7899999999999999998887 655432 1 224445 5666666666554433
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=127.53 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
....+-+.+..+....++.+|||+ |||||-.|+.+++..+ .|+|+++|+++.|++.|++.+. +... |+|++|||
T Consensus 35 ~~~~Wr~~~i~~~~~~~g~~vLDv-a~GTGd~a~~~~k~~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA 110 (238)
T COG2226 35 LHRLWRRALISLLGIKPGDKVLDV-ACGTGDMALLLAKSVG--TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA 110 (238)
T ss_pred chHHHHHHHHHhhCCCCCCEEEEe-cCCccHHHHHHHHhcC--CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech
Confidence 334455555555555588999999 6999999999999986 7999999999999999999998 4344 99999999
Q ss_pred HHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++ |..+++||+|.+... ..++...++++.|.|+|||.++|.+
T Consensus 111 e~L-Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 111 ENL-PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhC-CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 987 444889999999874 4478999999999999999888765
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=126.33 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=93.8
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
....|.....+..++...++.+|||+ |||+|+.|..|+...++ .++|+++|.++++++.|+++++ ...++++++++|
T Consensus 59 ~~~~p~~~~~~~~~l~~~~~~~VLDi-G~GsG~~a~~la~~~~~-~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 59 TISAPHMVAMMTELLELKPGMKVLEI-GTGSGYQAAVLAEIVGR-DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred EechHHHHHHHHHHhCCCCcCEEEEE-CCCccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 34556665555566677788999999 99999999999988653 6899999999999999999998 223689999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.+.++. .++||+|++++....+ .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~~~-~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 137 GTQGWEP-LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCcc-cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence 9876543 4689999999876644 34567778999988774
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=127.87 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=93.4
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++..+....++++|||| |||+|+++.+++...+ +.+|++||+||++++.|++++. +..++++++++|+.+.+...
T Consensus 57 m~~~l~~~~~~~~vL~I-G~G~G~l~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 57 MMGFLLFNPRPQHILQI-GLGGGSLAKFIYTYLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred HHHHHhcCCCCCEEEEE-CCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 33444444578999999 9999999999998764 6899999999999999999998 33578999999999998766
Q ss_pred cCCccEEEEcCCcCc-------HHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 109 FREADFVLIDCNLEN-------HEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~-------y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.++||+||+|+.... ..++++.+.+.|+|||.+++ |..
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi--n~~ 178 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV--NLW 178 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE--EcC
Confidence 678999999974332 37899999999999888776 544
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=122.18 Aligned_cols=132 Identities=15% Similarity=0.069 Sum_probs=100.1
Q ss_pred HHHHHHHHhhcCC--------cCCChhHHHHH-HHH---HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC
Q 041509 9 ATKAYLKTLKMGQ--------KAKEPNEAEFI-SAL---AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR 76 (211)
Q Consensus 9 ~~~ay~~~~~~~~--------~~~~~~~~~lL-~~l---~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~ 76 (211)
..++|+..++..- +..++.+-+.+ ..+ ....++.+|||+ |||+|+.++.++...+ +++|++||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDi-GcGtG~~al~la~~~~--~~~V~giD~s 78 (187)
T PRK00107 2 QLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDV-GSGAGFPGIPLAIARP--ELKVTLVDSL 78 (187)
T ss_pred hHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEE-cCCCCHHHHHHHHHCC--CCeEEEEeCc
Confidence 3567888777532 22333333222 222 222347899999 9999999999998653 6899999999
Q ss_pred hhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 77 VEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 77 ~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+++++.|+++.+ +. ++++++++|+.+... .++||+|++++. .++.++++.+.+.|+|||.+++.+..
T Consensus 79 ~~~l~~A~~~~~~~~l-~~i~~~~~d~~~~~~--~~~fDlV~~~~~-~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 79 GKKIAFLREVAAELGL-KNVTVVHGRAEEFGQ--EEKFDVVTSRAV-ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred HHHHHHHHHHHHHcCC-CCEEEEeccHhhCCC--CCCccEEEEccc-cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 999999999998 44 459999999988533 679999999863 56889999999999999999887644
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=122.17 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=92.0
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
....+..+|||+ |||+|+.++.++..+++ +++|+++|.++++++.|++|++ ++.++++++.+|+.+.++.+.+.||
T Consensus 36 l~~~~~~~vlDl-G~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 36 LRLRKGDMILDI-GCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred cCCCCcCEEEEe-CCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 345577899999 99999999999887643 6899999999999999999998 4467899999999988776567899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.||+++....+.++++.+.+.|+|||.+++
T Consensus 114 ~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGGGSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 999988777889999999999999887765
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-16 Score=131.33 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=94.4
Q ss_pred HHHHHHH-hhc--CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 10 TKAYLKT-LKM--GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 10 ~~ay~~~-~~~--~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
..||.|. +.. ++.+..|..-..+..++...+..+|||| |||+||.|..||..+.+ .|+|++||.+++.++.|+++
T Consensus 39 ~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeI-GtGsGY~aAlla~lvg~-~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 39 DLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEI-GTGSGYQAALLAHLVGP-VGRVVSVERDPELAERARRN 116 (209)
T ss_dssp GGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEE-S-TTSHHHHHHHHHHST-TEEEEEEESBHHHHHHHHHH
T ss_pred cCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEe-cCCCcHHHHHHHHhcCc-cceEEEECccHHHHHHHHHH
Confidence 4566664 222 3456667665545555568889999999 99999999999998864 78999999999999999999
Q ss_pred hc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 87 LG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 87 ~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++ ....+|++++||+...++. ..+||.|++.+..+... ..+.+.|++||.+++.-.
T Consensus 117 l~~~~~~nv~~~~gdg~~g~~~-~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 117 LARLGIDNVEVVVGDGSEGWPE-EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp HHHHTTHSEEEEES-GGGTTGG-G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEEES
T ss_pred HHHhccCceeEEEcchhhcccc-CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEEEc
Confidence 99 3346899999999887764 67999999999877543 334555678888877444
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-15 Score=111.18 Aligned_cols=109 Identities=22% Similarity=0.237 Sum_probs=90.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~ 110 (211)
+.......+.++|||+ |||+|..+..+++..+ .++|+++|.++.+++.|+++++ ....+++++.+|+.+.++...+
T Consensus 11 ~~~~~~~~~~~~vldl-G~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDI-GAGSGSITIEAARLVP--NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHcCCCCCCEEEEe-CCCCCHHHHHHHHHCC--CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 3333445556799999 9999999999998764 4899999999999999999988 3235799999998765544457
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+||.|+++.....+.++++.+.+.|+|||.+++
T Consensus 88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 88 EPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999999998777888999999999999988765
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=128.07 Aligned_cols=130 Identities=16% Similarity=0.086 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
..-|...++-.-.++.|.-..++.+.+...++.+|||. |||+|..|.+|++++.+ .|+|+++|.+++.++.|++|++
T Consensus 10 ~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEa-GtGSG~lt~~l~r~v~p-~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 10 PELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEA-GTGSGSLTHALARAVGP-TGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE---TTSHHHHHHHHHHTT-TSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEe-cCCcHHHHHHHHHHhCC-CeEEEccccCHHHHHHHHHHHHH
Confidence 34566667756678999999999999999999999999 99999999999999975 8999999999999999999999
Q ss_pred -CCCCcEEEEEcchHH-Hhh-hccCCccEEEEcCCcCcHHHHHHHHHhcC-CCCcEEEE
Q 041509 89 -LDASHVEFVIGDAQS-LLL-SHFREADFVLIDCNLENHEGVLRAVQAGN-KPNGAVVV 143 (211)
Q Consensus 89 -~~~~~V~~~~gda~e-~l~-~l~~~fD~VfiD~~~~~y~~~l~~~~~~L-~pgG~viv 143 (211)
++.++|++.++|..+ ..+ .+...+|.||+|-+.+ .+++..+.+.| +|||.+.+
T Consensus 88 ~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 88 HGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp TTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEE
T ss_pred cCCCCCceeEecceecccccccccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEE
Confidence 778899999999963 332 2357899999997754 35567777778 77665544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=118.16 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
....++...++...+...+..+|||+ |||+|+.|++++...+ +++|++||.+|++++.|++|++ ...++++++.+|
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDi-G~G~G~~~~~la~~~~--~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDI-GAGTGTIPVEAGLLCP--KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEe-CCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 45566667666666676677899999 9999999999987643 6899999999999999999997 223579999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.+.++.+...+|.+++|+. ....+.++.+.+.|+|||.+++...
T Consensus 99 ~~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 99 APECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hHHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 98866554456899999875 3567899999999999998877554
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=127.95 Aligned_cols=119 Identities=23% Similarity=0.161 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~ 106 (211)
+-+.+..++...++.+|||+ |||||.+|..+++.+++ .++|+++|++++|++.|++.+. ....+|++++||+.++ +
T Consensus 35 wr~~~~~~~~~~~g~~vLDv-~~GtG~~~~~l~~~~~~-~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-p 111 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDV-ACGTGDVTRELARRVGP-NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-P 111 (233)
T ss_dssp --SHHHHHHT--S--EEEEE-T-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---
T ss_pred HHHHHHhccCCCCCCEEEEe-CCChHHHHHHHHHHCCC-ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-c
Confidence 34445555667788999999 79999999999988754 7899999999999999999988 3345999999999986 4
Q ss_pred hccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 107 SHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
..+++||.|++-... .+....++++.+.|+|||.+++.|-.-.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 337899999988643 4678999999999999999998884333
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=120.39 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=86.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++++|||+ |||+|++++.++... ++++|++||.++++++.|+++.+ +. ++++++++|+.+.. ..++||+
T Consensus 39 ~~~~~~~vLDi-GcGtG~~s~~la~~~--~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~--~~~~fD~ 112 (181)
T TIGR00138 39 EYLDGKKVIDI-GSGAGFPGIPLAIAR--PELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ--HEEQFDV 112 (181)
T ss_pred HhcCCCeEEEe-cCCCCccHHHHHHHC--CCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc--ccCCccE
Confidence 34568899999 999999999998654 36899999999999999999987 43 46999999998852 2579999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.++ ..++.+.++.+.+.|+|||.+++.+
T Consensus 113 I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 113 ITSRA-LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred EEehh-hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 99988 5678889999999999999888765
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=116.59 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL 104 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~ 104 (211)
+....++...+...++.+|||+ |||+|+.++.+++..+ +++|+++|+++++++.|++|++ ....+++++.+|+...
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDi-G~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~ 93 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDV-GAGTGSVSIEAALQFP--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE 93 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEE-CCcCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence 3344444445555678899999 9999999999998753 6899999999999999999987 2235799999998543
Q ss_pred hhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 105 LLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.++||+||+++....+.+.++.+.+.|+|||.+++.
T Consensus 94 ---~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 94 ---LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred ---cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence 2468999999987777889999999999998887663
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=118.45 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=92.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
.+..|.....+..++...+..+|||+ |||+|++|..++... ++|+++|.++++++.|+++++ ....+++++.+|
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLei-G~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEI-GTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEE-CCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 35677777777777777788999999 999999999888753 589999999999999999997 223569999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+.++. .++||+|++++....+ .+.+.+.|+|||.+++.-
T Consensus 135 ~~~~~~~-~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 135 GWKGWPA-YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cccCCCc-CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEEE
Confidence 8765543 4789999999876644 455678899999877643
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-15 Score=111.12 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=47.6
Q ss_pred EEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc-CCccEEEEcCC
Q 041509 45 VVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF-READFVLIDCN 120 (211)
Q Consensus 45 LEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~-~~fD~VfiD~~ 120 (211)
||+ ||..|+||+++++++++.+ +++++||..+. .+.++++++ ++.++++++.|+..+.++.+. ++||++|+|++
T Consensus 1 lEi-G~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEI-GTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Ccc-ccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 799 9999999999999997643 38999999995 334444444 456789999999999998775 89999999998
Q ss_pred cC--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 121 LE--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 121 ~~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+. .....++.+.+.|+||| +++.||
T Consensus 79 H~~~~~~~dl~~~~~~l~~gg-viv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGG-VIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEE-EEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 64 56788999999999855 666676
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=116.05 Aligned_cols=115 Identities=20% Similarity=0.147 Sum_probs=92.5
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l 108 (211)
+.+...+...++++|||+ |||+|..+..+++..++ +++|+++|+++++++.|+++++ ...++++++++|+.+. +..
T Consensus 35 ~~~l~~l~~~~~~~vLDi-GcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDV-CCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFD 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEe-CCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCC
Confidence 333344455667899999 99999999999988754 6899999999999999999987 3346899999999875 322
Q ss_pred cCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 109 FREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 109 ~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.++||+|+++.. ..++.+.++++.+.|+|||.+++.+..
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 579999998753 346788999999999999988877653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-14 Score=115.24 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=101.3
Q ss_pred HHHHHHHHhhcCC-----cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHH
Q 041509 9 ATKAYLKTLKMGQ-----KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS 83 (211)
Q Consensus 9 ~~~ay~~~~~~~~-----~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~A 83 (211)
.+..|++.++... ..+++....++..+.. +..+|||+ |||+|..+..++...+ +.+|++||+++++++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDi-GcGtG~~~~~la~~~p--~~~v~gVD~s~~~i~~a 80 (202)
T PRK00121 6 RRRGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEI-GFGKGEFLVEMAKANP--DINFIGIEVHEPGVGKA 80 (202)
T ss_pred hhccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEE-ccCCCHHHHHHHHHCC--CccEEEEEechHHHHHH
Confidence 3445666544211 2466777788877766 66889999 9999999999988763 57999999999999999
Q ss_pred HHHhc-CCCCcEEEEEcchHHHhhh-c-cCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 84 KKILG-LDASHVEFVIGDAQSLLLS-H-FREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 84 r~~~~-~~~~~V~~~~gda~e~l~~-l-~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++++ ....+++++++|+.+.++. + .++||.|++..... .+..+++.+.+.|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 81 LKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred HHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 99987 2236799999999444442 2 56899999853211 257899999999999999888653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=116.80 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
..+++..+. .++.+|||+ |||+|+.+.+++.. +.+|+++|+++++++.|++++. +..++++++++|+.+..
T Consensus 34 ~~~~l~~l~--~~~~~vLDi-GcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 34 LDRLLAELP--PRPLRVLDA-GGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHHHHhcC--CCCCEEEEe-CCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 334444442 456899999 99999999999864 5799999999999999999987 55678999999998875
Q ss_pred hhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 106 LSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+...++||+|++.... .+....++.+.+.|+|||.+++.
T Consensus 107 ~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 107 QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 4446799999987532 35578899999999999988765
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=117.29 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CCCCcEEEEEcchHHHh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~~~~V~~~~gda~e~l 105 (211)
+.+..++...++.+|||+ |||+|..+..+++..++ .++|+++|++++|++.|+++.. ....+++++++|+.+.
T Consensus 63 ~~~~~~~~~~~~~~VLDl-GcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l- 139 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDL-CCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL- 139 (261)
T ss_pred HHHHHHhCCCCCCEEEEE-CCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-
Confidence 344444555677899999 99999999999887543 5899999999999999987753 2346899999999775
Q ss_pred hhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 106 LSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..+++||+|++... ..+....++++.+.|+|||.+++.|-
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 423578999998653 34678899999999999999988774
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-14 Score=109.33 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=86.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
.+..+|||+ |||+|..+..|+..+.+ +++++++|+++++++.|+++++ ...++++|+++|+.+ ++.. .+.||+|+
T Consensus 2 ~~~~~iLDl-GcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDL-GCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEE-T-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCCEEEEe-cCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEE
Confidence 356899999 99999999999965543 7999999999999999999987 323489999999999 5531 37999999
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
..+.. .+....++.+.+.|+++|.+++.+..
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98643 34567899999999999988877643
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=115.21 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred CCcCChhHHHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH
Q 041509 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY 80 (211)
Q Consensus 1 ~~~~~~~~~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~ 80 (211)
|-.|||+.... |.+ .+ ...++.+...+...++++|||+ |||+|..+..++...+ +++|++||+++.++
T Consensus 1 ~~~w~~~~Y~~-~~~-~~-------~~~~~~ll~~~~~~~~~~vLDi-GcG~G~~~~~la~~~~--~~~v~gvD~s~~~i 68 (258)
T PRK01683 1 MSDWNPSLYLK-FED-ER-------TRPARDLLARVPLENPRYVVDL-GCGPGNSTELLVERWP--AARITGIDSSPAML 68 (258)
T ss_pred CCCCCHHHHHH-HHH-Hh-------hcHHHHHHhhCCCcCCCEEEEE-cccCCHHHHHHHHHCC--CCEEEEEECCHHHH
Confidence 77899987754 222 11 2234333333455677899999 9999999999998763 68999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 81 KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 81 ~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.|++++ .+++++.+|+.+..+ .++||+|+..... .+...+++.+.+.|+|||.+++.
T Consensus 69 ~~a~~~~----~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 69 AEARSRL----PDCQFVEADIASWQP--PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred HHHHHhC----CCCeEEECchhccCC--CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999875 358899999986643 4699999988643 36788999999999999987774
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=125.13 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=86.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhc---cCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l---~~~f 112 (211)
.++++|||+ |||+|.+++.++.. ...+|++||.++.+++.|++|++ ++. ++++++++|+.+.+..+ .++|
T Consensus 219 ~~g~rVLDl-fsgtG~~~l~aa~~---ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNC-FSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEe-ccCCCHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 467899999 79999988876532 24699999999999999999998 554 58999999999988654 4589
Q ss_pred cEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 113 DFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 113 D~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|+||+|++. ..|.++++.+.++|+|||.++.+.+.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999763 24788888999999999988876653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-13 Score=112.65 Aligned_cols=107 Identities=15% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+..+|||+ |||+|..+..+++.+..++++++++|.+++|++.|++++. +...+++++++|+.+.. .+.+|+|+
T Consensus 55 ~~~~~vLDl-GcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDL-GCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IENASMVV 130 (247)
T ss_pred CCCCEEEEE-cccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CCCCCEEe
Confidence 356789999 9999999999988654457899999999999999999997 45668999999998753 24689988
Q ss_pred EcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+... ..+....++.+.+.|+|||.+++.|....
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 7532 12346799999999999999999886543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-13 Score=109.29 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~ 109 (211)
++..+....+..+|||+ |||+|..++.++... .++|++||.++++++.|++|++ ...++++++++|+.+.++...
T Consensus 44 l~~~l~~~~~~~~vLDl-~~GsG~l~l~~lsr~---a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~ 119 (199)
T PRK10909 44 LFNWLAPVIVDARCLDC-FAGSGALGLEALSRY---AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPG 119 (199)
T ss_pred HHHHHhhhcCCCEEEEc-CCCccHHHHHHHHcC---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcC
Confidence 34445444567899999 899999998643322 4699999999999999999998 223579999999998876444
Q ss_pred CCccEEEEcCC-cC-cHHHHHHHHHhc--CCCCcEEEEEec
Q 041509 110 READFVLIDCN-LE-NHEGVLRAVQAG--NKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD~~-~~-~y~~~l~~~~~~--L~pgG~viv~dn 146 (211)
++||+||+|.+ .. .+.+.++.+.+. |.|++.+++-++
T Consensus 120 ~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 120 TPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 57999999998 33 456677777664 788777776554
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=117.25 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=90.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
.+..|..-..+...+...+.++|||+ |||+|+.++.+++..+. .++|+++|.++++++.|+++++ ...++++++.+|
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDI-G~GtG~~a~~LA~~~~~-~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD 139 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEI-GGGTGYNAAVMSRVVGE-KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGD 139 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEE-eCCccHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 34455544444344456677899999 99999999999987643 5789999999999999999998 224679999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.+.++. .++||.|++++...+. .+.+.+.|+|||.+++..+
T Consensus 140 ~~~~~~~-~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 140 GYYGVPE-FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred hhhcccc-cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEEeC
Confidence 9877654 4689999999775543 3445677899998877554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=129.97 Aligned_cols=106 Identities=9% Similarity=0.108 Sum_probs=89.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhccCCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l~~~fD 113 (211)
...++++|||+ |||+|.++++++.+ ...+|++||.++.+++.|++|++ ++. ++++++++|+.+.+..+.++||
T Consensus 535 ~~~~g~rVLDl-f~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 535 QMAKGKDFLNL-FAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred HhcCCCeEEEc-CCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 33467899999 89999999999874 13579999999999999999998 554 5899999999998876667999
Q ss_pred EEEEcCCc--------------CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 114 FVLIDCNL--------------ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 114 ~VfiD~~~--------------~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+|++|++. ..|.++++.+.++|+|||.++++.|
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99999752 2478889999999999998877665
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=109.18 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~ 107 (211)
++|...+...+.++|||+ |||+|..++.++...+ ..+|+++|+++.+++.|++|++ +..+ ++++.+|..+.++
T Consensus 21 ~lL~~~l~~~~~~~vLDl-G~G~G~i~~~la~~~~--~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDL-GCGSGVISLALAKRGP--DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEE-TSTTSHHHHHHHHTST--CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-
T ss_pred HHHHHHHhhccCCeEEEe-cCChHHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-
Confidence 355554454478899999 8999999999998753 5789999999999999999998 4444 9999999987655
Q ss_pred ccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 HFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||+|+.+.+.. ...++++.+.+.|+|||.++++-+
T Consensus 96 -~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 -DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp -TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 58999999986532 247788899999999999876655
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=100.39 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=82.7
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD 118 (211)
.+|||+ |||+|..++.+++.. ..+++++|+||..++.|++++. +..++++++++|+.+..+.+ .++||+|+.|
T Consensus 2 ~~vlD~-~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDP-GCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEE-TSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEc-CcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 579999 899999999888764 4899999999999999999998 56788999999999987433 6899999998
Q ss_pred CCcC-----------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLE-----------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~-----------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+-. .|...++.+.++|+|||.+++.-
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 35788999999999999887654
|
... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=122.69 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=100.6
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++.....++..++...++++|||+ |||+|..|++++..+.+ .++|+++|+++++++.+++|++ +. ++|+++++
T Consensus 232 ~~~qd~~s~lv~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~~-~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~ 308 (444)
T PRK14902 232 ITIQDESSMLVAPALDPKGGDTVLDA-CAAPGGKTTHIAELLKN-TGKVVALDIHEHKLKLIEENAKRLGL-TNIETKAL 308 (444)
T ss_pred EEEEChHHHHHHHHhCCCCCCEEEEe-CCCCCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeC
Confidence 34566667777777777788899999 79999999999988743 6899999999999999999998 44 45999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|+.+....+.++||+|++|++-. ...++++.+.+.|+|||.++.+...+.+
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 99876543447899999997521 0245788889999999998876665554
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=118.64 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=86.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||| |||+|.++..|+... +.+|++||+++.+++.|+++.+ +..++++++++|+.+. +..+++||+|+
T Consensus 117 ~~~~~VLDi-GCG~G~~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDV-GCGIGGSSRYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEe-cCCCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEE
Confidence 467899999 999999999999764 5799999999999999999887 5667899999999875 32367999999
Q ss_pred EcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.... ..+...+++++.+.|+|||.+++.+.
T Consensus 192 s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 192 SMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7543 23567899999999999999988763
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=114.21 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=90.0
Q ss_pred CChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 24 KEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 24 ~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
..|++..++...+. ..++.+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ +..++|+++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDl-G~GsG~i~~~la~~~~--~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~ 177 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDL-CTGSGCIAIACAYAFP--EAEVDAVDISPDALAVAEINIERHGLEDRVTLI 177 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEE-eCchhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 44566666655433 2346789999 8999999999998763 6799999999999999999998 556789999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
++|..+.++ .++||+|+.|.+. ..|...++.+.+.|+|||.+++
T Consensus 178 ~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 178 QSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred ECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999976553 3589999997431 1246678888889999887765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=119.74 Aligned_cols=151 Identities=16% Similarity=0.253 Sum_probs=112.5
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....++..++...++++|||+ |||+|..|+.+++.+.. .|+|+++|+++++++.+++|++ +. ++|+++++|
T Consensus 235 ~~qd~~s~l~~~~l~~~~g~~VLDl-~ag~G~kt~~la~~~~~-~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D 311 (434)
T PRK14901 235 TVQDRSAQLVAPLLDPQPGEVILDA-CAAPGGKTTHIAELMGD-QGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAAD 311 (434)
T ss_pred EEECHHHHHHHHHhCCCCcCEEEEe-CCCCchhHHHHHHHhCC-CceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 3445556667766777778999999 79999999999988753 6899999999999999999998 44 469999999
Q ss_pred hHHHhh---hccCCccEEEEcCCcC---------c----------------HHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 041509 101 AQSLLL---SHFREADFVLIDCNLE---------N----------------HEGVLRAVQAGNKPNGAVVVGYNAFRKG- 151 (211)
Q Consensus 101 a~e~l~---~l~~~fD~VfiD~~~~---------~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~~- 151 (211)
+.+... ...++||.|++|++-. + ..+.++.+.+.|+|||.++.+...+.+.
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E 391 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE 391 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 987642 1246899999997421 0 2567888999999999988877776653
Q ss_pred c------e--ecCCCcEE-----Eeec---CCcEEEEEEec
Q 041509 152 S------W--RSSGSKSQ-----LLPI---GEGLLVTRIAA 176 (211)
Q Consensus 152 ~------~--~~~~~~~v-----~lpi---g~Gl~v~~~~~ 176 (211)
+ + .+|+|+.. ++|- .||+.+++-..
T Consensus 392 ne~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 392 NEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred HHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 1 1 14555422 3342 47888876543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=112.84 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH
Q 041509 27 NEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL 104 (211)
Q Consensus 27 ~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~ 104 (211)
.-+-||..++.....++|||+ |||+|..++.+|.... ..+|++||+++++++.|++|++ ++.++|+++++|..+.
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDl-GaG~G~l~L~la~r~~--~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDL-GAGNGALGLLLAQRTE--KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred cHHHHHHhhcccccCCeEEEe-cCCcCHHHHHHhccCC--CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHh
Confidence 347789999999889999999 8999999888887643 4899999999999999999999 6789999999999999
Q ss_pred hhhc-cCCccEEEEcCCc---------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 105 LLSH-FREADFVLIDCNL---------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 105 l~~l-~~~fD~VfiD~~~---------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.. ..+||+|+.+.+. .+.+++++.+..+|+|||.+.++.
T Consensus 108 ~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 108 LKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred hhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 8755 3469999987521 135889999999999999998876
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=105.85 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
...+.+|.......++++|||+ |||+|+.+..++.. +.+|+++|.++++++.|++|++....+++++.+|..+..
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdl-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEI-GAGTGLVAIRLKGK----GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEe-CCChhHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc
Confidence 3344666666667788899999 99999999998864 238999999999999999999822236899999987653
Q ss_pred hhccCCccEEEEcCCcC------------------------cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 106 LSHFREADFVLIDCNLE------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.++||+|+.+.+.. .+.++++.+.+.|+|||.+++.+....
T Consensus 80 ---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ---CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 45899999875320 146789999999999999988876554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-13 Score=114.03 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=84.6
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC--CCcEEEEEcchHHHhhhccCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD--ASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~--~~~V~~~~gda~e~l~~l~~~ 111 (211)
..+|++||+| |||.|.++.++++. ....+|++||+|+++++.|++++. +. ..+++++.+|+.+.+....++
T Consensus 74 ~~~p~~VL~i-G~G~G~~~~~~l~~--~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 74 HPNPKRVLII-GGGDGGTLREVLKH--PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCCCEEEEE-ecCchHHHHHHHcC--CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 3578999999 99999999888754 235799999999999999999986 22 568999999999988765679
Q ss_pred ccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|...+ .| .++++.+.+.|+|||.+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999996322 12 6788999999999887665
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=108.75 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=86.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
+..+|||+ |||+|..+..++..+..++++++++|++++|++.|+++++ +...+++++++|+.+.. ...+|+|++
T Consensus 53 ~~~~iLDl-GcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDL-GCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---IKNASMVIL 128 (239)
T ss_pred CCCEEEEe-cCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCCCCEEee
Confidence 56789999 9999999999998765457899999999999999999987 44568999999998753 246898877
Q ss_pred cCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.... .+....++.+.+.|+|||.+++.|....
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 5432 2357789999999999999998876543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=116.38 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=85.7
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------C-CCCcEEEEEcchHHHhhh
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------L-DASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~-~~~~V~~~~gda~e~l~~ 107 (211)
+...+|++||+| |+|.|+++..+++. .+..+|+.||+||++++.|+++.. . ...+++++++|+.+.+..
T Consensus 146 ~~h~~PkrVLII-GgGdG~tlrelLk~--~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 146 SKVIDPKRVLIL-GGGDGLALREVLKY--ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred HhCCCCCEEEEE-CCCHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 445688999999 99999977666653 225799999999999999997321 1 257899999999999887
Q ss_pred ccCCccEEEEcCCcC-------cH-HHHHHHHHhcCCCCcEEEEEe
Q 041509 108 HFREADFVLIDCNLE-------NH-EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-------~y-~~~l~~~~~~L~pgG~viv~d 145 (211)
..++||+||+|...+ .| .++++.+.+.|+|||.+++-.
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 677999999996432 34 778999999999988766643
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=110.10 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=87.1
Q ss_pred HHHHHHH--HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh-
Q 041509 29 AEFISAL--AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL- 105 (211)
Q Consensus 29 ~~lL~~l--~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l- 105 (211)
+.+|..+ +...+..+|||+ |||+|+.++.++...+ .|+|+++|++++|++.++++.+.. .+|.++.+|+.+..
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~-G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~ 134 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYL-GAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPER 134 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEE-ccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcch
Confidence 4455544 566678899999 9999999999998874 689999999999999887776632 67999999986521
Q ss_pred -hhccCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEE
Q 041509 106 -LSHFREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 -~~l~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..+.++||+||.|.... .....++.+.+.|+|||.+++.
T Consensus 135 ~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 135 YAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 12346799999987543 3345688999999999998883
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=118.29 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....++..++...++.+|||+ |||+|..|++++..+.. +|+|+++|+++++++.+++|++ +. ++|+++++|
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~-cagpGgkt~~la~~~~~-~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~D 296 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDT-CAAPGGKTTAIAELMKD-QGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIAD 296 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEe-CCCccHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECc
Confidence 4555566777777777888899999 69999999999988753 7899999999999999999998 54 469999999
Q ss_pred hHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 101 AQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.+......++||.|++|++-. .+.+.++.+.+.|+|||.++.+...+.+.
T Consensus 297 a~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 297 AERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred hhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 9876433357899999996421 12556888899999999988877777653
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-13 Score=118.79 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=90.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc---cCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l---~~~f 112 (211)
.++++||++| |.||.++++.|.+- ..+||+||.+...++.|++|++ ++ .++++|+++|+.+.+... +.+|
T Consensus 216 ~~GkrvLNlF-sYTGgfSv~Aa~gG---A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 216 AAGKRVLNLF-SYTGGFSVHAALGG---ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred ccCCeEEEec-ccCcHHHHHHHhcC---CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 3479999997 99999999988752 3499999999999999999999 55 477999999999999876 3499
Q ss_pred cEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+|++|++. ++|.+....+.++|+|||.++++.|..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999742 368899999999999999998887744
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=109.61 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
++.....+...++...++.+|||+ |||+|..|+.++..+.. .|+|+++|+++++++.+++|++ ....+|+++++|+.
T Consensus 55 ~qd~~s~~~~~~l~~~~g~~VLDl-~ag~G~kt~~la~~~~~-~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 55 IQEASSMIPPLALEPDPPERVLDM-AAAPGGKTTQISALMKN-EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR 132 (264)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEE-CCCchHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence 344444455555666677899999 69999999999988753 6899999999999999999998 22357999999998
Q ss_pred HHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+... ..+.||.|++|++-. ...++++.+.++|+|||.++.+...+.+.
T Consensus 133 ~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 133 VFGA-AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred Hhhh-hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 7533 356799999996421 12458888889999999888777766553
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=106.24 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc--cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH--FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l--~~~fD~V 115 (211)
.+..+|||| |||+|.++..+|...+ ++.++++|+++++++.|++++. ....+++++++|+.+.+... .+.+|.|
T Consensus 15 ~~~~~ilDi-GcG~G~~~~~la~~~p--~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 15 NKAPLHLEI-GCGKGRFLIDMAKQNP--DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCCceEEEe-CCCccHHHHHHHHhCC--CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 355689999 9999999999998763 6899999999999999999987 22358999999999876433 3589999
Q ss_pred EEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++.+.. .+.++++.+.+.|+|||.+++..+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9975321 126789999999999999887654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=111.51 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=87.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...+.++|||+ |||+|..++.++..... .++|+++|+++++++.|+++.. ...++++++.+|+.+. +..++.||+
T Consensus 73 ~~~~~g~~VLDi-G~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~ 149 (272)
T PRK11873 73 AELKPGETVLDL-GSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDV 149 (272)
T ss_pred ccCCCCCEEEEe-CCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeE
Confidence 445678899999 99999998888876643 6799999999999999999987 2236899999998764 322568999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.+.. ..+..+.++++.+.|+|||.+++.+-
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 998763 23567899999999999999888653
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=119.20 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=98.4
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++.....+...++...++++|||+ |||+|..|+++++.++. +++|+++|+++++++.++++++ +. ++|+++++
T Consensus 232 ~~vqd~~s~l~~~~l~~~~g~~VLDl-gaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~ 308 (445)
T PRK14904 232 VSVQNPTQALACLLLNPQPGSTVLDL-CAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALGI-TIIETIEG 308 (445)
T ss_pred EEEeCHHHHHHHHhcCCCCCCEEEEE-CCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeC
Confidence 34444445555556666677899999 79999999999988754 6899999999999999999998 44 57999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|+.+..+ .++||.|++|++-. ...+.++.+.+.|+|||.++...+.+.+.
T Consensus 309 Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 309 DARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred ccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 9987643 46899999995321 12357888899999999999888777643
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=111.99 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=89.2
Q ss_pred CChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 24 KEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 24 ~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
..|++..++...+. ..++.+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ ++.++|+++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDl-G~GsG~iai~la~~~p--~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~ 189 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDL-CTGSGCIAIACAYAFP--DAEVDAVDISPDALAVAEINIERHGLEDRVTLI 189 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEE-echhhHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 34556666554432 1123789999 8999999999998753 6899999999999999999998 556789999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
++|..+.++ .++||+|+.+.+. ..|...++.+.+.|+|||.+++
T Consensus 190 ~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 190 ESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999987654 3589999987421 1246778888889999988776
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-12 Score=108.37 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=81.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+..++...+ +++|+++|+++.+++.|++. +++++++|+.+..+ .++||+|+
T Consensus 26 ~~~~~~~vLDl-GcG~G~~~~~l~~~~p--~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~--~~~fD~v~ 94 (255)
T PRK14103 26 GAERARRVVDL-GCGPGNLTRYLARRWP--GAVIEALDSSPEMVAAARER------GVDARTGDVRDWKP--KPDTDVVV 94 (255)
T ss_pred CCCCCCEEEEE-cCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCCC--CCCceEEE
Confidence 44577899999 9999999999998763 68999999999999999763 48899999987632 57999999
Q ss_pred EcCC---cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 117 IDCN---LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 117 iD~~---~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.... ..+....++.+.+.|+|||.+++.
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 8763 245688999999999999988774
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=111.45 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=85.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhc-cCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l-~~~ 111 (211)
..+|++||+| |+|.|.++.++++. +...+|+.||+|+++++.||+++. ++ ..+++++++|+.+.+... .++
T Consensus 89 ~~~pkrVLiI-GgG~G~~~rellk~--~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 89 IPNPKKVLVV-GGGDGGVLREIARH--SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCCeEEEE-cCCccHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 3578999999 99999998888765 235799999999999999999985 23 468999999999998765 568
Q ss_pred ccEEEEcCCcC-------cHHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE-------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~-------~y~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|+..+ ...++++.+.+.|+|||.+++
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999997543 136789999999999886644
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=116.84 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.++.....++..++...++.+|||+ |||+|..|+.+++..+ +++|+++|.++++++.+++|++...-.++++++|+.
T Consensus 227 ~iQd~~s~~~~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~--~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~ 303 (427)
T PRK10901 227 SVQDAAAQLAATLLAPQNGERVLDA-CAAPGGKTAHILELAP--QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDAR 303 (427)
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEe-CCCCChHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 3455556666667777788899999 7999999999998763 489999999999999999999822224789999998
Q ss_pred HHhhhc-cCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLSH-FREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~l-~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+..... .++||.|++|++-. .+.++++.+.+.|+|||.++.+.+.+.+.
T Consensus 304 ~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 304 DPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred cchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 653312 46899999997521 12468888899999999998888766653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=92.95 Aligned_cols=92 Identities=28% Similarity=0.266 Sum_probs=74.7
Q ss_pred EEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc---
Q 041509 45 VVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL--- 121 (211)
Q Consensus 45 LEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~--- 121 (211)
||+ |||+|..+..++.. .+.+|+++|+++++++.++++.. ...+.++.+|+.++ +..+++||+|+.-...
T Consensus 1 Ldi-G~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~--~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDI-GCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLK--NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEE-T-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTT--TSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS
T ss_pred CEe-cCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhccc--ccCchheeehHHhC-ccccccccccccccceeec
Confidence 799 99999999999986 37899999999999999999887 34566999999887 4347899999987532
Q ss_pred CcHHHHHHHHHhcCCCCcEEEE
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv 143 (211)
++..++++++.+.|+|||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 5778999999999999887764
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=104.28 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=81.4
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...++.+|||+ |||+|..+++|++. +.+|+++|+++++++.|+++.+ ....+++++++|..+.. +.++||+|
T Consensus 27 ~~~~~~~vLDi-GcG~G~~a~~La~~----g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~I 99 (197)
T PRK11207 27 KVVKPGKTLDL-GCGNGRNSLYLAAN----GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--FDGEYDFI 99 (197)
T ss_pred ccCCCCcEEEE-CCCCCHHHHHHHHC----CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--cCCCcCEE
Confidence 44567899999 99999999999863 5799999999999999999887 22356999999987652 25689999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.-.. ......+++.+.+.|+|||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 87543 2246789999999999999865543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=111.99 Aligned_cols=100 Identities=20% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++.+|||| |||+|+.+..|++ .+++|++||.++++++.|+++.+ +...+|+++++|+.+... ..++||+|+.
T Consensus 131 ~g~~ILDI-GCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDI-GCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-EGRKFDAVLS 204 (322)
T ss_pred CCCEEEEe-eCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-ccCCCCEEEE
Confidence 45689999 9999999998875 26799999999999999998876 345689999999987632 3579999997
Q ss_pred cCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-.- ..+....++.+.++|+|||.+++..
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 542 3366889999999999999888754
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=115.18 Aligned_cols=125 Identities=17% Similarity=0.119 Sum_probs=97.3
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
++.....++..++...++.+|||+ |||+|+.|+.+++.++ .|+|+++|+++++++.+++|++ +...++++..+|+
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDl-cag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDA-CAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEe-CCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 455566677777777788999999 6999999999998874 6899999999999999999998 5443455577887
Q ss_pred HHHhhh-ccCCccEEEEcCCcC---------c----------------HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 102 QSLLLS-HFREADFVLIDCNLE---------N----------------HEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~-l~~~fD~VfiD~~~~---------~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.+.... ..++||.|++|++-. + ..+.++.+.++|+|||.++.+...+.+.
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 643221 146899999995311 1 3568888999999999999888877643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.7e-12 Score=109.49 Aligned_cols=105 Identities=15% Similarity=0.034 Sum_probs=84.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++.+|||+ |||+|..++.+|.. +.+|+++|.++++++.|++|++ +. ++++|+.+|+.+.+....+.||+
T Consensus 170 ~~~~~~~VLDl-~cG~G~~sl~la~~----~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 170 RELPPRSMWDL-FCGVGGFGLHCATP----GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred HhcCCCEEEEc-cCCCCHHHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeE
Confidence 33457899999 89999999999862 5799999999999999999998 44 68999999999876544468999
Q ss_pred EEEcCCcCcH-HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 115 VLIDCNLENH-EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~~~~y-~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|++|.+.... ....+.+.+ +.|++.+++..|.-
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~-~~~~~ivyvsc~p~ 277 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQ-MAPRFILYSSCNAQ 277 (315)
T ss_pred EEECCCCCCccHHHHHHHHH-cCCCeEEEEECCcc
Confidence 9999887644 444555544 67778888877643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-12 Score=108.15 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=85.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+...+..+|||| |||+|..+..++... +++|+++|+++++++.|++++.. .++++++++|+.+. +...++||+|
T Consensus 48 l~l~~~~~VLDi-GcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~-~~~~~~FD~V 121 (263)
T PTZ00098 48 IELNENSKVLDI-GSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK-DFPENTFDMI 121 (263)
T ss_pred CCCCCCCEEEEE-cCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC-CCCCCCeEEE
Confidence 355677899999 999999999888642 57999999999999999998763 46799999998754 2225789999
Q ss_pred EE-cC----CcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 116 LI-DC----NLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 116 fi-D~----~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+. ++ ...+...+++.+.+.|+|||.+++.|-.
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 97 32 1236678999999999999999887743
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-13 Score=110.25 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=84.8
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc-cC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH-FR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l-~~ 110 (211)
++..+..+|||.| +|.||+++..+++ ++ +|+|||.||..+++|+-|-= ++ ...|+++.||+.+.++.+ ++
T Consensus 130 V~~~~G~rVLDtC-~GLGYtAi~a~~r----GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 130 VKVKRGERVLDTC-TGLGYTAIEALER----GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred eccccCCEeeeec-cCccHHHHHHHHc----CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 3455788999997 9999999987764 45 99999999999999987742 33 447999999999999887 56
Q ss_pred CccEEEEcCCc-----CcH-HHHHHHHHhcCCCCcEEE
Q 041509 111 EADFVLIDCNL-----ENH-EGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 111 ~fD~VfiD~~~-----~~y-~~~l~~~~~~L~pgG~vi 142 (211)
+||+|+-|.+. +.| +++++++.+.|+|||.++
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 79999999754 345 779999999999999865
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-12 Score=112.49 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=89.8
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-C--CCcEEEEEcchHHH
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-D--ASHVEFVIGDAQSL 104 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~--~~~V~~~~gda~e~ 104 (211)
.++|...+......+|||+ |||+|..++++++..+ ..+|+++|.++.+++.|++|++ . . ..+++++.+|+.+.
T Consensus 217 trllL~~lp~~~~~~VLDL-GCGtGvi~i~la~~~P--~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDL-GCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCcccCCeEEEE-eccccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3444444443344689999 9999999999998763 6899999999999999999997 2 2 24799999998765
Q ss_pred hhhccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 105 LLSHFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++ .++||+|+.+.+.. ...++++.+.+.|+|||.++++.|-.
T Consensus 294 ~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 294 VE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred CC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 43 35899999986532 12568888899999999999987754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=104.74 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=79.8
Q ss_pred HHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 29 AEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
...+..+.. ..++++|||+ |||+|+.++.++.. . ..+|+++|+||.+++.|++|++ +..+++++..++.
T Consensus 107 ~~~l~~l~~~~~~~~~VLDi-GcGsG~l~i~~~~~-g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---- 178 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDV-GCGSGILAIAAAKL-G--AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---- 178 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEe-CCcHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC----
Confidence 334444443 3467899999 99999998876653 1 3579999999999999999998 4445566555432
Q ss_pred hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 106 LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+|+.+.....+..+++.+.+.|+|||.+++.+
T Consensus 179 -----~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 179 -----KADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred -----CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 79999988766667888999999999999887754
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-12 Score=104.70 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=88.2
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
|...+...++.+|+|+ |||+|-||-.|++..+ ++.|++||.|++|++.|++.+ .+.+|..||..+.-+ ..+
T Consensus 22 Lla~Vp~~~~~~v~DL-GCGpGnsTelL~~RwP--~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p--~~~ 92 (257)
T COG4106 22 LLARVPLERPRRVVDL-GCGPGNSTELLARRWP--DAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKP--EQP 92 (257)
T ss_pred HHhhCCccccceeeec-CCCCCHHHHHHHHhCC--CCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCC--CCc
Confidence 4444566788999999 9999999999999985 799999999999999998763 468899999988755 478
Q ss_pred ccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|++|.++. .+++.+.+..+...|.|||.+.|-
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 999998874 457888999999999999987663
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=105.76 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHhh---CCC-CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 24 KEPNEAEFISALAAG---NNA-QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~---~~~-~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
..|++..++...... .++ .+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ +..++++++
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDl-G~GsG~i~l~la~~~~--~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDL-GTGSGCIALALAYEFP--NAEVIAVDISPDALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEE-eccHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 345555555544322 233 689999 8999999999998763 5799999999999999999998 555679999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+|..+.++ ..+||+|+.+.+- ..|..+++.+.+.|+|||.+++
T Consensus 171 ~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 171 QSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred ECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 999987543 2489999987311 1366788888889999887665
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.3e-12 Score=102.11 Aligned_cols=105 Identities=11% Similarity=0.012 Sum_probs=81.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+...++.+|||+ |||+|+.+++|+.. +.+|+++|+++.+++.|+++.+ +. ++++..+|.... + +.
T Consensus 22 l~~~~~~~~~~~vLDi-GcG~G~~a~~la~~----g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~~ 92 (195)
T TIGR00477 22 VREAVKTVAPCKTLDL-GCGQGRNSLYLSLA----GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAA-A-LN 92 (195)
T ss_pred HHHHhccCCCCcEEEe-CCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhc-c-cc
Confidence 3344455678899999 99999999999863 6799999999999999998876 33 378888887543 2 35
Q ss_pred CCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||+|+.... ......+++.+.+.|+|||.+++..
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 68999986532 2356789999999999999865543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=108.69 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=83.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C----CCCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L----DASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~----~~~~V~~~~gda~e~l~~l~~~f 112 (211)
..+|++||.| |+|.|.++.++.+.. ...+|+.||+|++.++.||+++. . ...+++++.+|+.+.+....++|
T Consensus 101 ~~~pk~VLii-GgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 101 HPNPKTVFIM-GGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCCEEEEE-CCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 3478999999 999999988777632 25789999999999999999986 1 25789999999999997667799
Q ss_pred cEEEEcCCcC--------cH-HHHHH-HHHhcCCCCcEEEE
Q 041509 113 DFVLIDCNLE--------NH-EGVLR-AVQAGNKPNGAVVV 143 (211)
Q Consensus 113 D~VfiD~~~~--------~y-~~~l~-~~~~~L~pgG~viv 143 (211)
|+||+|...+ .| .++++ .+.+.|+|+|.+++
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 9999996331 12 57787 88999999886554
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=111.46 Aligned_cols=103 Identities=26% Similarity=0.243 Sum_probs=84.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---cCCcc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~~~fD 113 (211)
..+.++|||+ |||+|..+++||.. ..+|+++|.++++++.|++|++ ...++++|+.+|+.+.++.+ .++||
T Consensus 290 ~~~~~~vLDl-~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 290 LQGEELVVDA-YCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred cCCCCEEEEc-CCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 3456789999 89999999999875 3689999999999999999998 33468999999999877643 35799
Q ss_pred EEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEec
Q 041509 114 FVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 114 ~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+|++|.+... ..+.++.+.+ ++|++.+++..|
T Consensus 365 ~vi~dPPr~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 365 VLLLDPPRKGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred EEEECcCCCCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 9999998754 6777777665 788787777665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=105.14 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=84.5
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C--C-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L--D-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~--~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..+|++||+| |+|+|.++..+++.. ...+++.+|+|+++++.|++++. . . ..+++++.+|+.+.+....++|
T Consensus 70 ~~~p~~VL~i-G~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 70 HPNPKHVLVI-GGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCCCEEEEE-cCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 4568899999 999999888777643 25789999999999999999885 1 1 3679999999999887667899
Q ss_pred cEEEEcCCcC-----c--HHHHHHHHHhcCCCCcEEEE
Q 041509 113 DFVLIDCNLE-----N--HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 113 D~VfiD~~~~-----~--y~~~l~~~~~~L~pgG~viv 143 (211)
|+|++|.... . ..++++.+.+.|+|||.+++
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 9999997522 1 36788999999999887765
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.4e-12 Score=108.19 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLL 106 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~ 106 (211)
+++... .+.++||++| |.||.++++.+.+- ..+|++||.+..+++.|++|++ ++ .++++|+.+|+.+.+.
T Consensus 116 ~~v~~~---~~gkrvLnlF-sYTGgfsv~Aa~gG---A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 116 KWVRKY---AKGKRVLNLF-SYTGGFSVAAAAGG---AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp HHHHHH---CTTCEEEEET--TTTHHHHHHHHTT---ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH
T ss_pred HHHHHH---cCCCceEEec-CCCCHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH
Confidence 445554 4568999996 99999988876531 3589999999999999999998 54 3789999999999887
Q ss_pred hc--cCCccEEEEcCCc---------CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 107 SH--FREADFVLIDCNL---------ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 107 ~l--~~~fD~VfiD~~~---------~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .++||+|++|++. .+|.+.+..+.++|+|||.++.+.|..
T Consensus 189 ~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 189 RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 54 5799999999753 368899999999999999888887743
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-12 Score=103.24 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=82.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++|||| |||+|..+..+++..+ +.+|+++|+++++++.|+++++ ++.++++++.+|+.+. + ..++||+|+...
T Consensus 1 ~~vLDi-GcG~G~~~~~la~~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDF-GCGYGSDLIDLAERHP--HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEE-CCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-CCCCCCEeehHH
Confidence 479999 9999999999988763 5799999999999999999987 6778999999998654 2 246899998643
Q ss_pred ---CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 120 ---NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 120 ---~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
...+...+++.+.+.|+|||.+++.+
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 23457889999999999999888765
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=101.19 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=81.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..+|||+ |||+|..++.++.. + .++|+++|+++++++.|++|+.....+++++++|+.+.++ .++||+|+.+
T Consensus 35 ~~~~~vLDl-GcG~G~~~~~la~~-~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~n 108 (223)
T PRK14967 35 GPGRRVLDL-CTGSGALAVAAAAA-G--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSN 108 (223)
T ss_pred CCCCeEEEe-cCCHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEEC
Confidence 455789999 99999999988864 1 3699999999999999999988222368999999987643 4789999998
Q ss_pred CCcC------------------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 119 CNLE------------------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 119 ~~~~------------------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+.. .+..+++.+.+.|+|||.+++.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4211 14567888899999999988765444
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-11 Score=96.85 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCc-EEEEEcchHHHh
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASH-VEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~-V~~~~gda~e~l 105 (211)
..+|.......+.++|||+ |||+|+.+..++.. +.+++++|.++++++.|++++. +..++ +.++++|..+.+
T Consensus 12 ~~~l~~~~~~~~~~~vLd~-G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEV-GTGSGIVAIVAAKN----GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEE-ccccCHHHHHHHhh----cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc
Confidence 3445555555678899999 99999999998864 5799999999999999999987 43333 999999987754
Q ss_pred hhccCCccEEEEcCCcC------------------------cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 106 LSHFREADFVLIDCNLE------------------------NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~------------------------~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
. .++||+|+.+...- .+..+++.+.+.|+|||.+++....
T Consensus 87 ~--~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 87 R--GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred c--ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 3 34899999875311 1356789999999999988776543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=105.58 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=81.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||+ |||+|+.++.++.. ...+|+++|+++.+++.|++|+. +...++++..++.... ..++||+|+
T Consensus 158 ~~g~~VLDv-GcGsG~lai~aa~~---g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDV-GCGSGILSIAALKL---GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---IEGKADVIV 230 (288)
T ss_pred CCCCEEEEe-CCChhHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---cCCCceEEE
Confidence 356899999 99999999887753 24699999999999999999998 5566788888874322 257899999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.....+.+.++.+.+.|+|||.+++..
T Consensus 231 an~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 231 ANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred EecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 98776677889999999999998877743
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=100.17 Aligned_cols=111 Identities=28% Similarity=0.185 Sum_probs=89.1
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
+...+...++.+|||+ |||+|..+..++....+ .++++++|.++.+++.|+++......+++++.+|+.+. +...++
T Consensus 11 ~~~~~~~~~~~~vLdi-G~G~G~~~~~~a~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 87 (241)
T PRK08317 11 TFELLAVQPGDRVLDV-GCGPGNDARELARRVGP-EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGS 87 (241)
T ss_pred HHHHcCCCCCCEEEEe-CCCCCHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCC
Confidence 3444566678899999 99999999999987632 68999999999999999998544456899999998764 222578
Q ss_pred ccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||+|+..... .+....++.+.+.|+|||.+++.+
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 9999987532 467889999999999999888765
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-11 Score=110.59 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=85.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---cCCc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~~~f 112 (211)
...+..+|||+ |||+|..++.+|.. ..+|+++|.++++++.|++|++ ...++++++.+|+.+.+..+ .++|
T Consensus 294 ~~~~~~~VLDl-gcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 294 DPQPGDRVLDL-FCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred cCCCCCEEEEE-eccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 34456799999 89999999999875 3699999999999999999998 32357999999998876431 4679
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+|++|.+.....+.++.+.+ ++|++.+++..|.-
T Consensus 369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred CEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChH
Confidence 999999987766677777766 57888888887743
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=112.91 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=86.8
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+...++.+|||+ |||+|..++.++... +.+|+++|+++++++.|+++..+...+++|+++|+.+... ..++||+|
T Consensus 262 ~~~~~~~~vLDi-GcG~G~~~~~la~~~---~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 336 (475)
T PLN02336 262 LDLKPGQKVLDV-GCGIGGGDFYMAENF---DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTY-PDNSFDVI 336 (475)
T ss_pred cCCCCCCEEEEE-eccCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCC-CCCCEEEE
Confidence 345567899999 999999999998764 5799999999999999999887556789999999876421 14689999
Q ss_pred EEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..... .+....++.+.+.|+|||.+++.+-
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 986432 3578899999999999999888763
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=100.36 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 26 PNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 26 ~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
|.+..++..+... .++.+|||+ |||+|..++.++...+ +.+++++|+++++++.|++++. ...++++++++|+.
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDi-g~G~G~~~~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDL-GTGSGAIALALAKERP--DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF 147 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEE-eCcHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 4444454444332 245689999 8999999999998764 5799999999999999999998 22357999999998
Q ss_pred HHhhhccCCccEEEEcCCcC-----------------------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCNLE-----------------------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~-----------------------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.++ .++||+|+.+.+-. .|...++.+.+.|+|||.+++..
T Consensus 148 ~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 148 EPLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ccCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7543 57899999864311 13467788889999999877643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=113.42 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.+|||+ |||+|..++.++...+ +.+|+++|+|+++++.|++|+. ++.++++++.+|..+.++ .++||+|+.+
T Consensus 139 ~~~VLDl-G~GsG~iai~la~~~p--~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILEL-GTGSGCIAISLLCELP--NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSN 213 (506)
T ss_pred CCEEEEc-cCchhHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEEC
Confidence 4689999 8999999999998764 6899999999999999999987 556789999999876543 4689999986
Q ss_pred CCc-----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNL-----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~-----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+- ..|..+++.+.+.|+|||.+++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 420 1245667778889999998776
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=104.89 Aligned_cols=111 Identities=12% Similarity=-0.020 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+...+.++|||+ |||+|..++.+++..+ +.+++.+|. |++++.|+++++ ++.++|+++.+|+.+. + .
T Consensus 141 l~~~~~~~~~~~vlDi-G~G~G~~~~~~~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~--~ 213 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDV-GGGIGDISAAMLKHFP--ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y 213 (306)
T ss_pred HHHHcCCCCCCEEEEe-CCchhHHHHHHHHHCC--CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-C--C
Confidence 3334445567899999 9999999999999874 589999997 789999999988 6778999999998753 1 2
Q ss_pred CCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 110 READFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 110 ~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
..+|+|++.. +.+.....++.+.+.|+|||.+++.|.++.
T Consensus 214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 3479988754 222346789999999999999999886554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=105.66 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+...++.+|||| |||-|..++++|+.. +.+|++|.++++..+.|++.++ ++.+++++...|..++ .
T Consensus 54 ~~~~~~l~~G~~vLDi-GcGwG~~~~~~a~~~---g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----~ 125 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDI-GCGWGGLAIYAAERY---GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----P 125 (273)
T ss_dssp HHTTTT--TT-EEEEE-S-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHhCCCCCCEEEEe-CCCccHHHHHHHHHc---CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----C
Confidence 3333556788999999 999999999999875 6799999999999999999998 7788999999998764 3
Q ss_pred CCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||.|+.=. ..++|..+++.+.++|+|||.+++..
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4999988542 34578999999999999998887643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-11 Score=98.96 Aligned_cols=108 Identities=24% Similarity=0.205 Sum_probs=88.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+..+|||+ |||+|..+..++...+. ..+++++|.++.+++.|++++. +...+++++.+|+.+... ..++||+
T Consensus 48 ~~~~~~~vldi-G~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 124 (239)
T PRK00216 48 GVRPGDKVLDL-ACGTGDLAIALAKAVGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PDNSFDA 124 (239)
T ss_pred CCCCCCeEEEe-CCCCCHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CCCCccE
Confidence 34456799999 99999999999988742 6899999999999999999987 345679999999987532 2578999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|++... ..+....++.+.+.|+|||.+++.+..
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 998643 346788999999999999988887643
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=106.16 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.|..+..+..++...+.+.|||. |||+|..++.++.. +.+++++|+|+++++.|++|++ +..+ ++++++|
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp-~cGtG~~lieaa~~----~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D 238 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDP-FCGTGGFLIEAGLM----GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGD 238 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEEC-CCCCCHHHHHHHHh----CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecc
Confidence 4667777777777777778899999 89999887765532 6899999999999999999998 5444 9999999
Q ss_pred hHHHhhhccCCccEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+. +...+.||.|+.|.+- ..|.+.++.+.+.|+|||.+++..
T Consensus 239 ~~~l-~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 239 ATKL-PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred hhcC-CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 9875 3225789999999541 126889999999999999877654
|
This family is found exclusively in the Archaea. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=113.90 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=89.7
Q ss_pred HHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCC
Q 041509 33 SALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 33 ~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
..+....++.+|||+ |||+|..+..++...+ +++|+++|+++.|++.|+++......+++++++|+.+..... .++
T Consensus 411 ~~i~d~~~g~rVLDI-GCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 411 RIILDYIKGDTIVDV-GAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HHHhhhcCCCEEEEe-CCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC
Confidence 334455577899999 9999999988888763 789999999999999999987633357899999998742112 578
Q ss_pred ccEEEEcCC----------------cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 112 ADFVLIDCN----------------LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 112 fD~VfiD~~----------------~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
||+|+.... ..+..+.++.+.+.|+|||.+++.|..+.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999986531 12457889999999999999999887655
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=102.40 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
+....++.|.......++.+|||+ |||+|..+..++. .+.+|+++|+++++++.|+++.. .+.++++|+.+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~ 96 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDA-GCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDA----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEe-eCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCC----CCCEEEcCccc
Confidence 445566666555555567899999 9999998888864 26799999999999999998754 24688999876
Q ss_pred HhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 104 LLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. +..+++||+|+.... ..+....+.++.+.|+|||.+++..
T Consensus 97 ~-~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 97 L-PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C-cCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 4 322568999998753 3467889999999999999887754
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=112.62 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=83.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------CC-CCcEEEEEcchHHHhhhc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------LD-ASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~~-~~~V~~~~gda~e~l~~l 108 (211)
...++++||++ |||+|..+..+++. +...+|+.||+||++++.||+++. .+ ..+++++++|+.+.+...
T Consensus 294 ~~~~~~rVL~I-G~G~G~~~~~ll~~--~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 294 ASARPRRVLVL-GGGDGLALREVLKY--PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 370 (521)
T ss_pred hCCCCCeEEEE-cCCccHHHHHHHhC--CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC
Confidence 34578999999 99999998888753 223799999999999999999542 12 368999999999988766
Q ss_pred cCCccEEEEcCCcC-------c-HHHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLE-------N-HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-------~-y~~~l~~~~~~L~pgG~viv 143 (211)
.++||+|++|.... . ..++++.+.+.|+|||.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence 78999999996432 1 25689999999999887766
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-11 Score=106.78 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.++++|||+ |||+|..++.+|.. +.+|++||.++.+++.|++|++ ...++++|+.+|+.+.+....++||+|++
T Consensus 232 ~~~~~vLDL-~cG~G~~~l~la~~----~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDL-FCGVGGFGLHCAGP----DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEc-cCCccHHHHHHhhc----CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 456889999 89999999988842 5789999999999999999998 22358999999999887543457999999
Q ss_pred cCCcCc-HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 118 DCNLEN-HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 118 D~~~~~-y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|.+... ..+.++.+.. ++|++.+++..|.
T Consensus 307 DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p 336 (374)
T TIGR02085 307 NPPRRGIGKELCDYLSQ-MAPKFILYSSCNA 336 (374)
T ss_pred CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCH
Confidence 998763 4566677764 6888888888773
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-11 Score=96.98 Aligned_cols=107 Identities=23% Similarity=0.207 Sum_probs=87.5
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
....++.+|||+ |||+|..+..++...+. .++++++|+++.+++.+++++. ...+++++.+|+.+... ..++||+|
T Consensus 35 ~~~~~~~~vldi-G~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~-~~~~~D~i 110 (223)
T TIGR01934 35 IGVFKGQKVLDV-ACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPF-EDNSFDAV 110 (223)
T ss_pred hccCCCCeEEEe-CCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCC-CCCcEEEE
Confidence 334477899999 99999999999988743 4799999999999999999877 44679999999987642 25689999
Q ss_pred EEcC---CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDC---NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++.. ...+....++.+.+.|+|||.+++.+.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8764 334678899999999999999888764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.4e-11 Score=100.40 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=87.4
Q ss_pred hhHHHHHHHHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 26 PNEAEFISALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 26 ~~~~~lL~~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
|++..++..+. ...++.+|||+ |||+|..++.++...+ ..+++++|+++++++.|++|+. ....+++++++|.
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDi-G~GsG~~~~~la~~~~--~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDL-GTGSGAIALALAKERP--DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEE-cCcHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 34444444333 23467789999 8999999999998874 5899999999999999999998 5567899999998
Q ss_pred HHHhhhccCCccEEEEcCCc-----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 102 QSLLLSHFREADFVLIDCNL-----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~-----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+.++ .++||+|+.+.+- ..|..+++.+.++|+|||.+++
T Consensus 168 ~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 168 FEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 65433 4789999986421 1246677788899999998776
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-11 Score=103.75 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=80.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+++++.. +.+|+++|.++++++.++++.+...-++++..+|..+.. +.++||+|+
T Consensus 117 ~~~~~~~vLDl-GcG~G~~~~~la~~----g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 117 QTVKPGKALDL-GCGQGRNSLYLALL----GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred hccCCCCEEEe-CCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc--ccCCccEEE
Confidence 33567799999 99999999999863 679999999999999999998721127999999986642 367899998
Q ss_pred EcC-----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 117 IDC-----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 117 iD~-----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.-. +.+....+++.+.+.|+|||.+++.
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 764 2235678999999999999985553
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=99.95 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=76.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
....-.++||+ |||.|..|..||.. ..+++++|+++.+++.||+.+++. .+|+++.+|..+..| .++||+|+
T Consensus 40 p~~ry~~alEv-GCs~G~lT~~LA~r----Cd~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P--~~~FDLIV 111 (201)
T PF05401_consen 40 PRRRYRRALEV-GCSIGVLTERLAPR----CDRLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP--EGRFDLIV 111 (201)
T ss_dssp TTSSEEEEEEE---TTSHHHHHHGGG----EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT-----SS-EEEEE
T ss_pred CccccceeEec-CCCccHHHHHHHHh----hCceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC--CCCeeEEE
Confidence 33445679999 99999999999876 479999999999999999999853 579999999988766 68999999
Q ss_pred EcC------CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDC------NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~------~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+-. +.++...+++.+...|+|||.+++++
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 873 12244567888889999999998876
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=99.17 Aligned_cols=101 Identities=17% Similarity=0.065 Sum_probs=79.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-ccCCccEEEEcC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-HFREADFVLIDC 119 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l~~~fD~VfiD~ 119 (211)
+.+|||+ |||+|..++.++...+ +.+|+++|+|+++++.|++|++.. .++++++|..+.++. +.++||+|+.|.
T Consensus 87 ~~~vLDl-g~GsG~i~l~la~~~~--~~~v~~vDis~~al~~A~~N~~~~--~~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDL-CCGSGAVGAALAAALD--GIELHAADIDPAAVRCARRNLADA--GGTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEe-cCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHc--CCEEEEeechhhcchhcCCCEeEEEECC
Confidence 3589999 8999999999987753 469999999999999999999822 147899999876543 246899999986
Q ss_pred CcC-----------------------------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 120 NLE-----------------------------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 120 ~~~-----------------------------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+-- .|.++++.+.++|+|||.+++...
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 310 135677777889999998887543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=101.79 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++...+...++++|||| |||=|..++++|+.. +.+|+++++|++..+.|++.++ |+..+|+++..|-.++
T Consensus 63 ~~~~kl~L~~G~~lLDi-GCGWG~l~~~aA~~y---~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---- 134 (283)
T COG2230 63 LILEKLGLKPGMTLLDI-GCGWGGLAIYAAEEY---GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---- 134 (283)
T ss_pred HHHHhcCCCCCCEEEEe-CCChhHHHHHHHHHc---CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----
Confidence 44445667889999999 999999999999875 7899999999999999999887 8888999999998776
Q ss_pred cCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||-|+.=+ .+++|..+++.+.+.|+|||.+++..
T Consensus 135 ~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 135 EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 45699998654 34579999999999999988776633
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=105.52 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
+.+.-++..+ ......+|||+ |||+|..++.++...+ ..+|+++|+++.+++.|+++++...-..+++.+|..+.
T Consensus 183 ~gt~lLl~~l-~~~~~g~VLDl-GCG~G~ls~~la~~~p--~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~- 257 (342)
T PRK09489 183 VGSQLLLSTL-TPHTKGKVLDV-GCGAGVLSAVLARHSP--KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD- 257 (342)
T ss_pred HHHHHHHHhc-cccCCCeEEEe-ccCcCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-
Confidence 3333444444 33345689999 9999999999998753 57999999999999999999981112357788887653
Q ss_pred hhccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 106 LSHFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
..++||+|+.+.+.. ...+.++.+.+.|+|||.++++.|.+.+
T Consensus 258 --~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~ 308 (342)
T PRK09489 258 --IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP 308 (342)
T ss_pred --cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC
Confidence 357899999986432 2477889999999999999998886554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=90.30 Aligned_cols=94 Identities=27% Similarity=0.250 Sum_probs=72.3
Q ss_pred EEEEccccHHHHHHHHHHHccCC-CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC--
Q 041509 44 MVVACANVANATTLALAAAAHQT-GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN-- 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~-~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~-- 120 (211)
|||+ |||+|..+..++..++.. ..+++++|+++++++.|+++.....-+++++++|+.++ +...++||+|+.-..
T Consensus 1 ILDl-gcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDL-GCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-PFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEE-T-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-HHHSSSEEEEEE-TTGG
T ss_pred CEEe-ecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-cccCCCeeEEEEcCCcc
Confidence 7999 999999999999887321 37999999999999999999872122899999999885 445789999998432
Q ss_pred ----cCcHHHHHHHHHhcCCCCc
Q 041509 121 ----LENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 121 ----~~~y~~~l~~~~~~L~pgG 139 (211)
.++....++.+.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 2345789999999999976
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-11 Score=106.27 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 25 EPNEAEFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 25 ~~~~~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
.|++-.++..+... .+..+|||+ |||+|..++.++...+ +.+|+++|+|+++++.|++|++....+++++++|..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDL-GcGSG~IaiaLA~~~p--~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDL-GTGSGAVAVTVALERP--DAFVRASDISPPALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEE-eChhhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 34455555555432 345689999 8999999999887653 6899999999999999999998333489999999866
Q ss_pred HhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
......++||+|+.+.+. ..|.++++.+.+.|+|||.+++
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 421124589999997632 0245677777788999887665
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-11 Score=98.26 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=82.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++++|||+ |||+|..+..++...+ ..+++++|.++++++.+++++. .+++++.+|+.+... ..++||+|+..
T Consensus 33 ~~~~~vLDl-G~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDI-GCGTGYLTRALLKRFP--QAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPL-EDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEE-CCCccHHHHHHHHhCC--CCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCC-CCCceeEEEEh
Confidence 346789999 9999999999998764 5789999999999999988765 478999999987632 35789999987
Q ss_pred CCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... .+....++.+.+.|+|||.+++..
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 532 356789999999999999887753
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=104.56 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=86.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
......+||| |||+|..++.+|...+ +..+++||+++.+++.|.+++. ...++|+++.+|+.+++..+ ++++|.|
T Consensus 120 ~~~~p~vLEI-GcGsG~~ll~lA~~~P--~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 120 KNQEKILIEI-GFGSGRHLLYQAKNNP--NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCCeEEEE-cCcccHHHHHHHHhCC--CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 3455689999 9999999999998864 6899999999999999999987 32467999999998765433 5799999
Q ss_pred EEcCCcC---------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE---------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~---------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++..+.+ .....++.+.+.|+|||.+.+..+
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9864321 126789999999999998877654
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=105.46 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=81.7
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+...++++|||| |||+|..+..+++.. +.+|+++|+++++++.|+++.++. .+++..+|..+. .++||.|
T Consensus 163 l~l~~g~rVLDI-GcG~G~~a~~la~~~---g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~l----~~~fD~I 232 (383)
T PRK11705 163 LQLKPGMRVLDI-GCGWGGLARYAAEHY---GVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRDL----NGQFDRI 232 (383)
T ss_pred hCCCCCCEEEEe-CCCccHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhhc----CCCCCEE
Confidence 344577899999 999999999998764 579999999999999999998743 488999998654 4789999
Q ss_pred EEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.-. ...++..+++.+.+.|+|||.+++.+
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 8543 23467889999999999999887754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=93.93 Aligned_cols=103 Identities=9% Similarity=-0.071 Sum_probs=79.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc--cC-Cc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH--FR-EA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l--~~-~f 112 (211)
..+..+|||+ +||+|..++.++... ..+|+.||.++++++.+++|++ +..++++++.+|+.+.+..+ .. .|
T Consensus 47 ~~~g~~vLDL-faGsG~lglea~srg---a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 47 EIQGAHLLDV-FAGSGLLGEEALSRG---AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred hcCCCEEEEe-cCCCcHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCc
Confidence 3467899999 799999999887652 3589999999999999999998 55568999999998877644 22 48
Q ss_pred cEEEEcCCcC--cHHHHHHHHHh--cCCCCcEEEEEe
Q 041509 113 DFVLIDCNLE--NHEGVLRAVQA--GNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~--~y~~~l~~~~~--~L~pgG~viv~d 145 (211)
|+||+|.+.. .+.+.++.+.. +|+++| ++++.
T Consensus 123 dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~-iiv~E 158 (189)
T TIGR00095 123 NVIYLDPPFFNGALQALLELCENNWILEDTV-LIVVE 158 (189)
T ss_pred eEEEECcCCCCCcHHHHHHHHHHCCCCCCCe-EEEEE
Confidence 9999998654 46667776655 466654 55555
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=95.99 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=76.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
....++.+|||+ |||+|+.+..|+..++ +.++++||+++++++.|++++. +++++.+|+.+ +..+++||+|
T Consensus 39 ~~~~~~~~VLDi-GCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~--~~~~~sfD~V 109 (204)
T TIGR03587 39 NRLPKIASILEL-GANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD--PFKDNFFDLV 109 (204)
T ss_pred HhcCCCCcEEEE-ecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC--CCCCCCEEEE
Confidence 344567789999 9999999999988763 6899999999999999998753 46788999887 3236799999
Q ss_pred EEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+...-. .+..+.++++.+.+ ++.+++++
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 987532 24577888888876 45566544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=96.12 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=92.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.+.+...+++.......++.+|||+ |||+|.++..+++. +.+++++|.++++++.|++++......++++.+++.
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 105 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDV-GCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGLKIDYRQTTAE 105 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEe-CCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHH
Confidence 3445555667666666678899999 99999998888753 468999999999999999988722236889999998
Q ss_pred HHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+......++||+|++... ..+....++.+.+.|+|||.+++..
T Consensus 106 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 106 ELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred HhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 876433579999988642 2356778999999999999888764
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-11 Score=96.09 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=79.8
Q ss_pred HHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh
Q 041509 30 EFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 30 ~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~ 106 (211)
.+...+... ....++||+| +|+|..++..++. ...+|+.||.|++.++..++|++ +..++++++.+|+...+.
T Consensus 31 alFniL~~~~~~g~~vLDLF-aGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLF-AGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT--TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred HHHHHhcccccCCCeEEEcC-CccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 344455444 5788999996 9999999865443 24799999999999999999999 666789999999998886
Q ss_pred hc---cCCccEEEEcCCcC--c-HHHHHHHHH--hcCCCCcEEEE
Q 041509 107 SH---FREADFVLIDCNLE--N-HEGVLRAVQ--AGNKPNGAVVV 143 (211)
Q Consensus 107 ~l---~~~fD~VfiD~~~~--~-y~~~l~~~~--~~L~pgG~viv 143 (211)
.+ ..+||+||+|++-. . |.+.++.+. .+|+++|.+++
T Consensus 107 ~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 107 KLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred hhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 65 57999999998654 3 477888887 56887655444
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=102.07 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=80.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc-----------
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF----------- 109 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~----------- 109 (211)
.+|||+ +||+|..|+.++... .+|++||.++++++.|++|++ ...++++|+.+|+.+.++.+.
T Consensus 208 ~~vLDl-~~G~G~~sl~la~~~----~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLEL-YCGNGNFTLALARNF----RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEE-eccccHHHHHHHhhC----CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccc
Confidence 579999 799999999888763 589999999999999999998 324589999999999876431
Q ss_pred ----CCccEEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 110 ----READFVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 110 ----~~fD~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.+||+||+|.+... +.+.++.+.+ |++.++|..|.
T Consensus 283 ~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 15899999998653 5667777765 57888888775
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=101.03 Aligned_cols=102 Identities=11% Similarity=0.001 Sum_probs=79.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++++|||| |||+|+.+..++... ..+|++||.++.++..++..-+ +...+|+++.+|+.+. +. .++||+
T Consensus 119 ~~l~g~~VLDI-GCG~G~~~~~la~~g---~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~ 192 (322)
T PRK15068 119 SPLKGRTVLDV-GCGNGYHMWRMLGAG---AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDT 192 (322)
T ss_pred CCCCCCEEEEe-ccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCE
Confidence 34567899999 999999999988753 3579999999998876544322 3345799999999876 43 678999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||.-+. ..+....++.+.+.|+|||.+++.
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 997543 235688999999999999988763
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=101.92 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=82.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+..+|||+ |||+|..++.+++..+ +.+++++|.++++++.|+++.. ..+++++.+|+.+. +...++||+|+...
T Consensus 113 ~~~~VLDL-GcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~l-p~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDV-GGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDL-PFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEE-ecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhC-CCCCCceeEEEEcC
Confidence 45789999 9999999999988763 5799999999999999999865 34689999999874 32257899999865
Q ss_pred Cc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 120 NL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 120 ~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.. .+....++++.+.|+|||.+++.+.
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 3557899999999999999877653
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=99.10 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=77.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
..+..+|||+ |||+|+.|..+|..+.+ .|+|++||+++++.+...+..+. ..+|.++.+|+..- ...+.+.+|+|
T Consensus 130 IkpG~~VLDL-GaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGSKVLYL-GAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCCEEEEe-CCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChhhhhcccCCCCEE
Confidence 4566789999 89999999999998854 68999999998765444433321 25789999998642 12124689999
Q ss_pred EEcCCcCcH-HHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENH-EGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y-~~~l~~~~~~L~pgG~viv~ 144 (211)
|+|....+. ..++..+.+.|+|+|.+++.
T Consensus 207 ~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 999865543 44556788899999998883
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=100.18 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=79.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---------c-
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---------F- 109 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---------~- 109 (211)
+++|||+ |||+|..++.|+... .+|++||.++++++.|++|++ ...++++|+.+|+.+.++.. .
T Consensus 198 ~~~vlDl-~~G~G~~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 198 KGDLLEL-YCGNGNFSLALAQNF----RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CCcEEEE-eccccHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccc
Confidence 3579999 899999999998764 489999999999999999998 33457999999999987641 1
Q ss_pred -----CCccEEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 110 -----READFVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 110 -----~~fD~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
..||+||+|.+... ..+.++.+.+ |++.++|..|.
T Consensus 273 ~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred cccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCH
Confidence 13899999998653 5667777765 67888887764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-10 Score=89.71 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=76.4
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
.+...+..+|||+ |||+|..|..++.. +++|+++|.|+.+++.+++++.. .++++++++|+.+.... ...||.
T Consensus 8 ~~~~~~~~~vLEi-G~G~G~lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~-~~~~d~ 80 (169)
T smart00650 8 AANLRPGDTVLEI-GPGKGALTEELLER----AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLP-KLQPYK 80 (169)
T ss_pred hcCCCCcCEEEEE-CCCccHHHHHHHhc----CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCcc-ccCCCE
Confidence 3344566789999 99999999999865 47999999999999999999874 35899999999987432 346999
Q ss_pred EEEcCCcCcHHHHHHHHHhc--CCCCcEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAG--NKPNGAVVV 143 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~--L~pgG~viv 143 (211)
||.+.+.....+.+..+... +.++|.+++
T Consensus 81 vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 81 VVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred EEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 99887654444555555543 334454444
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=92.22 Aligned_cols=115 Identities=16% Similarity=0.106 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhh----CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 26 PNEAEFISALAAG----NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 26 ~~~~~lL~~l~~~----~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
+...+++...+.. .++.+|||+ |||+|+++..++.. +.+++++|.++++++.+++++. ....++++..+|
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~~vLdl-G~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d 101 (224)
T TIGR01983 27 PLRLDYIRDTIRKNKKPLFGLRVLDV-GCGGGLLSEPLARL----GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTS 101 (224)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEE-CCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC
Confidence 3344555555542 347889999 99999999888763 4579999999999999999887 222369999999
Q ss_pred hHHHhhhccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+......++||+|++.. ...+....++.+.+.|+|||.+++..
T Consensus 102 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 102 VEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9887543347899999864 23466789999999999999877754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=98.04 Aligned_cols=96 Identities=17% Similarity=0.064 Sum_probs=75.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+..+|||+ |||+|+.+..++...+..+ .+++++|+++++++.|+++. .++++.++|+.+. +..+++||+|+.-
T Consensus 85 ~~~~vLDi-GcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l-p~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDI-GCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL-PFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEE-CCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC-CCcCCceeEEEEe
Confidence 45789999 9999999999998775422 48999999999999998763 3588999998764 4236789999965
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.... .++++.+.|+|||.++++.
T Consensus 159 ~~~~----~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 159 YAPC----KAEELARVVKPGGIVITVT 181 (272)
T ss_pred cCCC----CHHHHHhhccCCCEEEEEe
Confidence 4433 3567788899999988764
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=94.70 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=75.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C------------CCCcEEEEEcchHHHhh
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L------------DASHVEFVIGDAQSLLL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~------------~~~~V~~~~gda~e~l~ 106 (211)
++.+||++ |||.|.-++|||.. +-+|++||++|.+++.|.+... . ...+|+++++|..+.-.
T Consensus 34 ~~~rvLd~-GCG~G~da~~LA~~----G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARVFVP-LCGKSLDLAWLAEQ----GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeEEEe-CCCchhHHHHHHhC----CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 55799999 99999999999963 6799999999999998644221 0 13469999999987643
Q ss_pred hccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 SHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...++||.|+--+ +.+...++++.+.++|+|||.+++
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3346788886322 334567899999999999986444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-10 Score=79.04 Aligned_cols=98 Identities=27% Similarity=0.276 Sum_probs=79.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+++|+ |||.|..+..++. . ...+++++|.+++..+.+++... ....+++++.+|..+......++||+|+.+...
T Consensus 1 ~ildi-g~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDL-GCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEE-cCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 48999 9999999888876 2 36899999999999999986544 445789999999998764225789999998754
Q ss_pred C----cHHHHHHHHHhcCCCCcEEEEE
Q 041509 122 E----NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 122 ~----~y~~~l~~~~~~L~pgG~viv~ 144 (211)
. .+..+++.+.+.|+|+|.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 4688899999999998887763
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-10 Score=97.15 Aligned_cols=118 Identities=8% Similarity=-0.078 Sum_probs=85.1
Q ss_pred cCCChhHHHHHH--HHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcE
Q 041509 22 KAKEPNEAEFIS--ALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHV 94 (211)
Q Consensus 22 ~~~~~~~~~lL~--~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V 94 (211)
..++.++..-+. .+. ...++++|||+ |||+|+.+..++... ..+|++||.++.++..++..-+ ....++
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDv-GCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v 173 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPLKGRTILDV-GCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRA 173 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEe-ccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence 356667654322 222 34567899999 999999988887542 3589999999999876543222 234678
Q ss_pred EEEEcchHHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 95 EFVIGDAQSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 95 ~~~~gda~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+..+++.+.-. ..+||.||.-+- ..+..+.++++.+.|+|||.+++.+
T Consensus 174 ~~~~~~ie~lp~--~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 174 ILEPLGIEQLHE--LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEECCHHHCCC--CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999877632 458999998753 2356789999999999999988754
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-12 Score=90.48 Aligned_cols=94 Identities=20% Similarity=0.128 Sum_probs=61.7
Q ss_pred EEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCc-
Q 041509 45 VVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVLIDCNL- 121 (211)
Q Consensus 45 LEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~- 121 (211)
||+ |||+|..+.+++...+ ..+++++|+++.+++.|++++. ....+++.+..+..+..... .++||+|+.-.-.
T Consensus 1 Ldi-GcG~G~~~~~l~~~~~--~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDI-GCGTGRLLRALLEELP--DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EE-STTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEe-CccChHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 799 9999999999998873 7999999999999999998887 33344555555554443322 3599999986432
Q ss_pred --CcHHHHHHHHHhcCCCCcEE
Q 041509 122 --ENHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 122 --~~y~~~l~~~~~~L~pgG~v 141 (211)
++...+++.+.++|+|||.+
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 46688999999999998864
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=97.45 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhh---CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 26 PNEAEFISALAAG---NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 26 ~~~~~lL~~l~~~---~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
|..-.++..-+.. ..+.+|||+ |||-|..+.+||+. +.+||++|.++++++.|+.+.....-.|++....+.
T Consensus 42 ~~rl~~i~~~~~~~~~l~g~~vLDv-GCGgG~Lse~mAr~----Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~e 116 (243)
T COG2227 42 PLRLDYIREVARLRFDLPGLRVLDV-GCGGGILSEPLARL----GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVE 116 (243)
T ss_pred cchhhhhhhhhhcccCCCCCeEEEe-cCCccHhhHHHHHC----CCeeEEecCChHHHHHHHHhhhhccccccchhhhHH
Confidence 3333444444443 467899999 99999999999974 789999999999999999988711224889999999
Q ss_pred HHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.... .++||+|..--- .++-..+++.|.++++|||.+++..
T Consensus 117 dl~~~-~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 117 DLASA-GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred HHHhc-CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 88663 589999986532 2355779999999999988777644
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=94.74 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=89.4
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCC----CcEEEEEeCChhHHHHHHHHhc--CCC--CcEEEEEcchHHHhhhc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQT----GGRVVCILRRVEEYKLSKKILG--LDA--SHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~----~g~v~tiE~~~~~~~~Ar~~~~--~~~--~~V~~~~gda~e~l~~l 108 (211)
...+..++||+ ++|||..|..+...+... .++|+.+|+||+|++.+++... ++. .++++++|||.++ |..
T Consensus 97 ~p~~~m~~lDv-aGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-pFd 174 (296)
T KOG1540|consen 97 GPGKGMKVLDV-AGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-PFD 174 (296)
T ss_pred CCCCCCeEEEe-cCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-CCC
Confidence 44456789999 699999999999988531 3899999999999999999885 443 3499999999987 444
Q ss_pred cCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++.||...+...-+ +.++.++++.+.|+|||.+.+.+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999987654 56889999999999999998766
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=94.37 Aligned_cols=107 Identities=19% Similarity=0.101 Sum_probs=81.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-CCCcEEEEEcchHHHhhhccC----Ccc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-DASHVEFVIGDAQSLLLSHFR----EAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~~~~V~~~~gda~e~l~~l~~----~fD 113 (211)
++.+|||+ |||+|..|..|+++++. +.++++||++++|++.|++++. . ..-+|++++||..+.++-... ...
T Consensus 63 ~~~~iLEL-GcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVEL-GSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEec-CCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 45789999 99999999999998753 5799999999999999999987 2 234688899999775432211 334
Q ss_pred EEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 114 FVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 114 ~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++|++... ++-.+.++.+.+.|+|||.+++.-|..
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 55555432 234678999999999999888755544
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=98.07 Aligned_cols=113 Identities=11% Similarity=-0.023 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
.-++|..+.. ++++|||+ |||+|..++..+.- ...+|+++|+||.+++.|++|.+ +....++.-..+..+..
T Consensus 152 cL~~Le~~~~--~g~~vlDv-GcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 152 CLEALEKLLK--KGKTVLDV-GCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred HHHHHHHhhc--CCCEEEEe-cCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 3456666654 78999999 99999988887763 24789999999999999999998 33333445555555543
Q ss_pred hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 106 LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
. .++||+|+.+--.+-.......+.++|+|||.++. ..++.
T Consensus 226 ~--~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIl-SGIl~ 266 (300)
T COG2264 226 E--NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLIL-SGILE 266 (300)
T ss_pred c--cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEE-EeehH
Confidence 3 47999999765334456778888889999887765 44554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-10 Score=95.73 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=89.0
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHH
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQS 103 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e 103 (211)
..++..++.. +|++||.| |.|.|..+-.+.+... -.+++.||+||+.++.||+.+. +. ..|++++.+|+.+
T Consensus 66 l~h~~~~ah~-~pk~VLii-GgGdG~tlRevlkh~~--ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282)
T COG0421 66 LAHVPLLAHP-NPKRVLII-GGGDGGTLREVLKHLP--VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282)
T ss_pred HHhchhhhCC-CCCeEEEE-CCCccHHHHHHHhcCC--cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence 3344444444 45899999 9999988777776542 5899999999999999999997 22 4899999999999
Q ss_pred HhhhccCCccEEEEcCCcC-c------HHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCNLE-N------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~-~------y~~~l~~~~~~L~pgG~viv 143 (211)
.+.+..++||+|++|..-+ . -.++++.+.+.|+++|.++.
T Consensus 142 ~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 142 FLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred HHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 9987666899999997543 2 28899999999999886554
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.4e-10 Score=95.62 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHH--hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 24 KEPNEAEFISALA--AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~--~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..|++-.++..+. ....+.+|||+ |||+|..++.++...+ ..+|+++|+||++++.|++|.. ++ .++.++.+
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDl-GTGSG~iai~la~~~~--~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~ 167 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDL-GTGSGAIAIALAKEGP--DAEVIAVDISPDALALARENAERNGL-VRVLVVQS 167 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEe-cCChHHHHHHHHhhCc--CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee
Confidence 4556666666532 12222279999 8999999999998874 5899999999999999999998 55 77788888
Q ss_pred chHHHhhhccCCccEEEEcCC---c-------------------------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCN---L-------------------------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~---~-------------------------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|..+-+ .++||+|+.+.+ . ..|.++++.+...|+|||.+++ .-.+.
T Consensus 168 dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~ 241 (280)
T COG2890 168 DLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT 241 (280)
T ss_pred eccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC
Confidence 766554 459999997642 0 1246677777778888665544 43333
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-10 Score=103.36 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=84.6
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH-hhhccCCc
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL-LLSHFREA 112 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~-l~~l~~~f 112 (211)
.++...+.++|||+ |||+|..+..|+.. ..+|++||.++++++.+++.. +...+++++++|+.+. ++...++|
T Consensus 31 ~~l~~~~~~~vLDl-GcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 31 SLLPPYEGKSVLEL-GAGIGRFTGELAKK----AGQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhcCccCCCEEEEe-CCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCE
Confidence 33344456789999 99999999999875 469999999999999886532 3346799999999642 23225789
Q ss_pred cEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 113 DFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 113 D~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|+|++..... ...+.++.+.+.|+|||.+++.|+.+.
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 9999875322 246789999999999999988887654
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-10 Score=94.82 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=94.0
Q ss_pred HHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC
Q 041509 13 YLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD 90 (211)
Q Consensus 13 y~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~ 90 (211)
|--.|+-.-.++.+....++-++....++.+|+|- |||+|..+.++++++.+ .|+++++|.++..++.|++.|+ +.
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~Es-GTGSGSlShaiaraV~p-tGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLEIRPGSVVLES-GTGSGSLSHAIARAVAP-TGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhcCCCCCEEEec-CCCcchHHHHHHHhhCc-CcceEEEEecHHHHHHHHHHHHHhCC
Confidence 33334433345555555666666788999999999 99999999999999975 8999999999999999999998 88
Q ss_pred CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 91 ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.++|++.+-|....-... ...+|.||+|-+.+ ...+..+.+.|+.+|+-++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCCCh--hhhhhhhHHHhhhcCceEE
Confidence 899999999986432111 56899999997654 2233344445555564333
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=92.36 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=76.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C------------CCCcEEEEEcchHHHhh
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L------------DASHVEFVIGDAQSLLL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~------------~~~~V~~~~gda~e~l~ 106 (211)
+..+||++ |||.|..++|||.. +-+|++||+++.+++.|.+.-. . ...+|++.++|+.+..+
T Consensus 37 ~~~rvL~~-gCG~G~da~~LA~~----G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRVLVP-LCGKSLDMLWLAEQ----GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeEEEe-CCCChHhHHHHHhC----CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 45789999 99999999999862 6799999999999998643211 0 13679999999998754
Q ss_pred hccCCccEEE-----EcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 SHFREADFVL-----IDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~fD~Vf-----iD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...+.||+|+ +-.+.+...++++.+.++|+|||.+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 4346889998 223444668899999999999985443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=101.04 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||+ |||+|..++..+.. ...+|+++|+||.+++.|++|++ +..+++++. ...+. ..++||+|+
T Consensus 160 ~~g~~vLDv-G~GSGILaiaA~kl---GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDV-GCGSGILAIAAAKL---GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEE-S-TTSHHHHHHHHT---TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---CCS-EEEEE
T ss_pred cCCCEEEEe-CCcHHHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---ccccCCEEE
Confidence 456899999 99999988877753 24689999999999999999998 666777663 22222 248999999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.+--..-.......+.++|+|||.+++ ..++.
T Consensus 231 ANI~~~vL~~l~~~~~~~l~~~G~lIl-SGIl~ 262 (295)
T PF06325_consen 231 ANILADVLLELAPDIASLLKPGGYLIL-SGILE 262 (295)
T ss_dssp EES-HHHHHHHHHHCHHHEEEEEEEEE-EEEEG
T ss_pred ECCCHHHHHHHHHHHHHhhCCCCEEEE-ccccH
Confidence 777666667777788888999776665 44443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=87.01 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh
Q 041509 30 EFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 30 ~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~ 106 (211)
.+...+.. .....++||++ +|+|..++..++. ...+++.||.|.+.....++|++ +...+++++.+|+...|+
T Consensus 32 alFNil~~~~i~g~~~LDlF-AGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLF-AGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred HHHHhccccccCCCEEEEec-CCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence 34444544 37889999996 9999988876654 25799999999999999999999 556899999999998888
Q ss_pred hccCC--ccEEEEcCCcC--cHHHHHHHHH----hcCCCCcEEEE
Q 041509 107 SHFRE--ADFVLIDCNLE--NHEGVLRAVQ----AGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~--fD~VfiD~~~~--~y~~~l~~~~----~~L~pgG~viv 143 (211)
.+... ||+||+|.+-. .+......+. ..|+|++.+++
T Consensus 108 ~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 108 QLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred hcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 77554 99999998754 3322333333 45898665544
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=96.49 Aligned_cols=98 Identities=20% Similarity=0.107 Sum_probs=81.3
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
.+|||+ +||+|..++.++...+ ..+|+++|.|+++++.+++|++ ...++++++++|+.+.+.. .++||+|++|..
T Consensus 59 ~~vLDl-~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP~ 134 (382)
T PRK04338 59 ESVLDA-LSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDPF 134 (382)
T ss_pred CEEEEC-CCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECCC
Confidence 589999 8999999999987653 3589999999999999999998 3345688999999988764 568999999985
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.-..+++.+...++++|.+++.
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 44467778877778888888775
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-10 Score=94.58 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=81.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---C--CCCcEEEEEcchHHHhhhccC-C
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---L--DASHVEFVIGDAQSLLLSHFR-E 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~--~~~~V~~~~gda~e~l~~l~~-~ 111 (211)
..+|++||-| |.|.|.++-.+.+.- +..+|+.||+||+..+.|++.+. . ...+++++.+|+...+.+..+ +
T Consensus 74 ~~~p~~VLii-GgG~G~~~~ell~~~--~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 74 HPNPKRVLII-GGGDGGTARELLKHP--PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SSST-EEEEE-ESTTSHHHHHHTTST--T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCCcCceEEE-cCCChhhhhhhhhcC--CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 3479999999 999998877776432 24799999999999999999987 2 257999999999999987666 8
Q ss_pred ccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 99999997542 12 7899999999999776554
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=94.43 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
++..+--||..+-.... .+|||+ |||.|+.++.+++..| ..+++-+|.|..+++.||+|+. +..++.+++.+|..
T Consensus 143 lD~GS~lLl~~l~~~~~-~~vlDl-GCG~Gvlg~~la~~~p--~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~ 218 (300)
T COG2813 143 LDKGSRLLLETLPPDLG-GKVLDL-GCGYGVLGLVLAKKSP--QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY 218 (300)
T ss_pred cChHHHHHHHhCCccCC-CcEEEe-CCCccHHHHHHHHhCC--CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccc
Confidence 44444445555544434 489999 9999999999999864 6899999999999999999999 44444488888887
Q ss_pred HHhhhccCCccEEEEcCCcCc-----H---HHHHHHHHhcCCCCcEEEEEec
Q 041509 103 SLLLSHFREADFVLIDCNLEN-----H---EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~-----y---~~~l~~~~~~L~pgG~viv~dn 146 (211)
+-.. ++||+|+.+.+..+ + ++.++.+.+.|++||.+.++-|
T Consensus 219 ~~v~---~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 219 EPVE---GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccc---ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 6543 49999999876542 1 5788899999999999988888
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=98.80 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=99.7
Q ss_pred cCCChhHHHHHHHHH--hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEE
Q 041509 22 KAKEPNEAEFISALA--AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVI 98 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~--~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~ 98 (211)
..++...+.+...++ ...++.+|||+| ++.|.-|..||..+.. .|.|+++|+++..++..++|++ ....+|.+.+
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~C-AAPGgKTt~la~~l~~-~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~ 170 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMA-AAPGSKTTQIAALMNN-QGAIVANEYSASRVKVLHANISRCGVSNVALTH 170 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeC-CCccHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 345555666666655 557889999996 9999999999998864 6899999999999999999998 2246799999
Q ss_pred cchHHHhhhccCCccEEEEcCCcC-------c------------------HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 99 GDAQSLLLSHFREADFVLIDCNLE-------N------------------HEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~~-------~------------------y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.|+......+.+.||.|++|++=+ + ..+.++.+.++|+|||.++-+.+.+.+
T Consensus 171 ~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 171 FDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 999876444456899999996411 0 156788888899999988777777665
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=88.98 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=73.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++++|||+ |||+|..+.+++.. +.+|+++|+++++++.|++++. +..+++++.++|+.+. .++||+|
T Consensus 53 ~~~~~~vLDi-GcG~G~~~~~la~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDA-GCGTGLLSIELAKR----GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----CGEFDIV 123 (219)
T ss_pred CCCCCEEEEE-eCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----CCCcCEE
Confidence 3467899999 99999999999863 5699999999999999999987 3346899999998764 2789999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+.-.- ..+....++.+.+.+++ |.++.
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~-~~~i~ 155 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKE-RVIFT 155 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCC-CEEEE
Confidence 86321 12345677788777765 44444
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=89.88 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=72.5
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hh----hc-cC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LL----SH-FR 110 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~----~l-~~ 110 (211)
..++.+|||+ |||+|..+..+++.... .++|++||+++. .. ..+|+++++|+.+. ++ .+ .+
T Consensus 49 ~~~~~~VLDl-G~GtG~~t~~l~~~~~~-~~~V~aVDi~~~---------~~-~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDL-GAAPGGWSQYAVTQIGD-KGRVIACDILPM---------DP-IVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEE-cccCCHHHHHHHHHcCC-CceEEEEecccc---------cC-CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 3567789999 99999999999987643 689999999981 11 13589999998763 21 12 56
Q ss_pred CccEEEEcCCcC-------c-------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLE-------N-------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~-------~-------y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+|+.|.... + ....++.+.+.|+|||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999986321 1 1467899999999999888744
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=96.78 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=93.4
Q ss_pred cCChhHHHHHHHHHhhcCCc-CCChhHHHHHHHHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh
Q 041509 3 CWSAENATKAYLKTLKMGQK-AKEPNEAEFISALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE 78 (211)
Q Consensus 3 ~~~~~~~~~ay~~~~~~~~~-~~~~~~~~lL~~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~ 78 (211)
-|.++.....+++.+...|- .+......-..... ...-+++|||+ |||.|..+..||+- +..|++||.+++
T Consensus 48 ~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDv-GCGgGLLSepLArl----ga~V~GID~s~~ 122 (282)
T KOG1270|consen 48 TWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDV-GCGGGLLSEPLARL----GAQVTGIDASDD 122 (282)
T ss_pred cccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEe-ccCccccchhhHhh----CCeeEeecccHH
Confidence 37777777777777665431 12211111110011 11223679999 99999999999974 789999999999
Q ss_pred HHHHHHHHhc--CC-CC----cEEEEEcchHHHhhhccCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 79 EYKLSKKILG--LD-AS----HVEFVIGDAQSLLLSHFREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 79 ~~~~Ar~~~~--~~-~~----~V~~~~gda~e~l~~l~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++.|++... .. .. ++++.+.++.+. .+.||.|+.---.+ +..+.++.+.++|+|+|.+++.+
T Consensus 123 ~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHHHhhhcCchhccccceeeehhhcchhhc----ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 9999999954 22 23 578888888765 35699998653333 45788999999999999998865
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=88.65 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++.+|||+ |||+|+.+..++.. +.+|+++|.++++++.|++++. +..+++++..+|.. ...++||+|+
T Consensus 62 ~~~~~vLDv-GcG~G~~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDA-GCGVGSLSIPLARR----GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEE-eCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hccCCcCEEE
Confidence 456799999 99999999999864 4679999999999999999987 44468999999932 2357899998
Q ss_pred EcCCc-----CcHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDCNL-----ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~~~-----~~y~~~l~~~~~~L~pgG~viv 143 (211)
..... +.....++.+.+.+. +|.++.
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTR-GSLIFT 163 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcC-CeEEEE
Confidence 75322 244567777776554 344443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=98.44 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=89.1
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc--CCc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF--REA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~--~~f 112 (211)
+...+.+++||+ .||+|.+|++||.. ..+|+++|+++++++.|++|.+ ...++++|..+++.++.+... ..+
T Consensus 289 ~~~~~~~~vlDl-YCGvG~f~l~lA~~----~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 289 LELAGGERVLDL-YCGVGTFGLPLAKR----VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred HhhcCCCEEEEe-ccCCChhhhhhccc----CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCC
Confidence 445566899999 89999999999953 5799999999999999999999 444569999999999988653 588
Q ss_pred cEEEEcCCcCcH-HHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 113 DFVLIDCNLENH-EGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 113 D~VfiD~~~~~y-~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|.|++|.++.-- .+.++.+.+ +.|...++|..|...
T Consensus 364 d~VvvDPPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~T 400 (432)
T COG2265 364 DVVVVDPPRAGADREVLKQLAK-LKPKRIVYVSCNPAT 400 (432)
T ss_pred CEEEECCCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHH
Confidence 999999987644 477777776 456789999888543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-09 Score=85.29 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=85.9
Q ss_pred CCcCCChhHHHHHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE
Q 041509 20 GQKAKEPNEAEFISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF 96 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~ 96 (211)
.|+..++..+..+...+. ....+.|+|+ |||||..++..+.. ...+|++||+||++++.+++|...+..+|+|
T Consensus 22 EQY~Tp~~~Aa~il~~a~~~g~l~g~~V~Dl-G~GTG~La~ga~~l---Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f 97 (198)
T COG2263 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDL-GAGTGILAIGAALL---GASRVLAVDIDPEALEIARANAEELLGDVEF 97 (198)
T ss_pred eecCCChHHHHHHHHHHHHcCCcCCCEEEEc-CCCcCHHHHHHHhc---CCcEEEEEecCHHHHHHHHHHHHhhCCceEE
Confidence 455666666654444443 3457789999 99999987766543 2479999999999999999999855678999
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+++|+.++ ..++|.++++.+... =..+++.+++. ...++-.+|+-+
T Consensus 98 ~~~dv~~~----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~---s~vVYsiH~a~~ 148 (198)
T COG2263 98 VVADVSDF----RGKFDTVIMNPPFGSQRRHADRPFLLKALEI---SDVVYSIHKAGS 148 (198)
T ss_pred EEcchhhc----CCccceEEECCCCccccccCCHHHHHHHHHh---hheEEEeecccc
Confidence 99999876 578999999976541 14455555553 345666666543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=83.47 Aligned_cols=106 Identities=19% Similarity=0.103 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 25 EPNEAEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 25 ~~~~~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
.....+++..+.. ..+.++|||+ |||+|..+..++.. +.+++++|+++.+++. .++....-+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~ 71 (161)
T PF13489_consen 6 YRAYADLLERLLPRLKPGKRVLDI-GCGTGSFLRALAKR----GFEVTGVDISPQMIEK---------RNVVFDNFDAQD 71 (161)
T ss_dssp CHCHHHHHHHHHTCTTTTSEEEEE-SSTTSHHHHHHHHT----TSEEEEEESSHHHHHH---------TTSEEEEEECHT
T ss_pred HHHHHHHHHHHhcccCCCCEEEEE-cCCCCHHHHHHHHh----CCEEEEEECCHHHHhh---------hhhhhhhhhhhh
Confidence 4456677777775 5678899999 99999988888553 4599999999999887 112222222222
Q ss_pred HhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 104 LLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ..++||+|+.-.-. .+...+++.+.++|+|||.+++.+
T Consensus 72 ~~~-~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 72 PPF-PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp HHC-HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred hhc-cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 222 36899999987543 356889999999999988887765
|
... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-10 Score=88.74 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=57.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc-CC-ccEEEE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF-RE-ADFVLI 117 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~-~~-fD~Vfi 117 (211)
+.|+|+| ||.|--|+.+|+. ..+|++||+||..++.|+.|.+ |..++|++++||+.+.++.+. .. +|+||+
T Consensus 1 ~~vlD~f-cG~GGNtIqFA~~----~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAF-CGVGGNTIQFART----FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT--TTSHHHHHHHHT----T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEec-cCcCHHHHHHHHh----CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3689995 9999999999986 4689999999999999999999 778999999999999987653 22 899999
Q ss_pred cCC
Q 041509 118 DCN 120 (211)
Q Consensus 118 D~~ 120 (211)
+.+
T Consensus 76 SPP 78 (163)
T PF09445_consen 76 SPP 78 (163)
T ss_dssp ---
T ss_pred CCC
Confidence 963
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=89.85 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=85.2
Q ss_pred HHHHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC----------CCcEEE
Q 041509 29 AEFISALA-AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD----------ASHVEF 96 (211)
Q Consensus 29 ~~lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~----------~~~V~~ 96 (211)
+..+..|- ...++-..||+ |+|+||.|.+++.-+..+++..++||.-|+.++.+++|+. .. ..++.+
T Consensus 70 a~~le~L~~~L~pG~s~Ldv-GsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDV-GSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHhhccCcceeec-CCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 44455443 25677789999 9999999999997776656666999999999999999997 21 346899
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++||....-+. ..+||.|++.+... +..+.+...|+|||.++|
T Consensus 149 vvGDgr~g~~e-~a~YDaIhvGAaa~---~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAE-QAPYDAIHVGAAAS---ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCc-cCCcceEEEccCcc---ccHHHHHHhhccCCeEEE
Confidence 99999987664 78999999998765 333444555567898887
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=87.08 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=72.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--h----hh
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--L----LS 107 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l----~~ 107 (211)
.+....+.++|||+ |||+|..+..++..... .++|+++|+++.+ . ..+++++.+|+.+. + ..
T Consensus 26 ~~~~i~~g~~VLDi-G~GtG~~~~~l~~~~~~-~~~v~~vDis~~~--------~--~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 26 KFKLIKPGDTVLDL-GAAPGGWSQVAVEQVGG-KGRVIAVDLQPMK--------P--IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HhcccCCCCEEEEe-cCCCCHHHHHHHHHhCC-CceEEEEeccccc--------c--CCCceEEEeeCCChhHHHHHHHH
Confidence 34444678899999 99999999988877643 6799999999965 1 23578888887542 1 11
Q ss_pred c-cCCccEEEEcCCcC-------c-------HHHHHHHHHhcCCCCcEEEEE
Q 041509 108 H-FREADFVLIDCNLE-------N-------HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~-------~-------y~~~l~~~~~~L~pgG~viv~ 144 (211)
. .++||+|+.|+... + ....++.+.+.|+|||.+++.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1 45799999986311 1 256888899999999988873
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-09 Score=93.31 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=83.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
-+|||+ .||+|..++.++...+ ...+|+++|+||++++.+++|++ ....+++++++|+...+.....+||+|++|.
T Consensus 46 ~~vLD~-faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADA-LSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEEC-CCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 389999 6999999999987642 24689999999999999999998 4345799999999999876567899999999
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
......+++.+.+.++++|.+.+.
T Consensus 123 fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCcHHHHHHHHHhcccCCEEEEE
Confidence 444567899999989888877765
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=89.83 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC--CCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQ--TGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~--~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
+++.......++.+|||+ |||+|..+..|+...+. .+.+|+++|+++++++.|+++... .++++..+++.+. +.
T Consensus 50 ~~~~~~l~~~~~~~iLDl-GcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l-~~ 125 (232)
T PRK06202 50 RLLRPALSADRPLTLLDI-GCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDEL-VA 125 (232)
T ss_pred HHHHHhcCCCCCcEEEEe-ccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccc-cc
Confidence 344444444567899999 99999999999876532 235999999999999999987652 2466666665443 22
Q ss_pred ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEE
Q 041509 108 HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv 143 (211)
.+++||+|+...... +..+.++++.+.++ |.+++
T Consensus 126 ~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 126 EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 357999999875322 23568888888876 45555
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-09 Score=88.22 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=71.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++.+|||+ |||||..+..++... +++|+++|++++|++.|++. .+++++|+.+. +..+++||.|++..
T Consensus 51 ~~~~VLDl-GcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~l-p~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDV-AAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVA-------DDKVVGSFEAL-PFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEE-cCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhc-------cceEEechhhC-CCCCCCEEEEEecC
Confidence 47899999 999999999998764 47999999999999999864 23578898765 53378999999875
Q ss_pred C---cCcHHHHHHHHHhcCCCC
Q 041509 120 N---LENHEGVLRAVQAGNKPN 138 (211)
Q Consensus 120 ~---~~~y~~~l~~~~~~L~pg 138 (211)
. ..+..+.++++.+.|+|.
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCc
Confidence 3 346688999999999983
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=93.43 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=78.1
Q ss_pred CCCeEEEEccccHHHH----HHHHHHHccC---CCcEEEEEeCChhHHHHHHHHhc------C-----------------
Q 041509 40 NAQLMVVACANVANAT----TLALAAAAHQ---TGGRVVCILRRVEEYKLSKKILG------L----------------- 89 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~s----tl~la~a~~~---~~g~v~tiE~~~~~~~~Ar~~~~------~----------------- 89 (211)
++.+|+++ |||+|.- ++.+++..+. .+.+|+++|+|+++++.|++..- +
T Consensus 99 ~~~ri~d~-GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSA-GCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEec-cccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45689999 9999963 4455555432 25799999999999999998641 0
Q ss_pred -----CCCcEEEEEcchHHHhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 90 -----DASHVEFVIGDAQSLLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 90 -----~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..++|+|..+|..+..+ ..++||+|+.-. +.+...+.++.+.+.|+|||.+++.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 12479999999987533 267999999742 223446799999999999999888663
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=88.98 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=91.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEE-EEEcchHHHhhhc-cCCccEEEEc-
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVE-FVIGDAQSLLLSH-FREADFVLID- 118 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~-~~~gda~e~l~~l-~~~fD~VfiD- 118 (211)
.|||+ |||||..=-+.-- .++-+||++|.+|.|.+.|.+.++ ....+++ |+++++.++ +++ ++++|.|+-.
T Consensus 79 ~vLEv-gcGtG~Nfkfy~~---~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 79 DVLEV-GCGTGANFKFYPW---KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLADGSYDTVVCTL 153 (252)
T ss_pred ceEEe-cccCCCCcccccC---CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccccCCeeeEEEEE
Confidence 48999 9999964222211 147899999999999999999998 4445566 999999877 444 7899999754
Q ss_pred --CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC-Ccee---cCCCcEEEeecCCcEEEEEEec
Q 041509 119 --CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK-GSWR---SSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 119 --~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~-~~~~---~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
+..++..+.++++.++|||||+++..+.+--+ +.|. +..++...=-+.||....|-..
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~ 217 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTG 217 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHH
Confidence 56778889999999999999998887654322 2232 3334443334566766665544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-09 Score=102.75 Aligned_cols=76 Identities=14% Similarity=-0.043 Sum_probs=62.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC---------------CCcEEEEEcchHH
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD---------------ASHVEFVIGDAQS 103 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~---------------~~~V~~~~gda~e 103 (211)
+++|||+ |||+|..++.++...+ .++|+++|+++++++.|++|++ ++ .++|+|+++|..+
T Consensus 119 ~~~VLDl-G~GSG~Iai~La~~~~--~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 119 DKTVAEL-GCGNGWISIAIAEKWL--PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred CCEEEEE-ecchHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh
Confidence 4689999 8999999999998764 4799999999999999999997 22 2579999999988
Q ss_pred HhhhccCCccEEEEcC
Q 041509 104 LLLSHFREADFVLIDC 119 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~ 119 (211)
.+.....+||+|+.+.
T Consensus 196 ~~~~~~~~fDlIVSNP 211 (1082)
T PLN02672 196 YCRDNNIELDRIVGCI 211 (1082)
T ss_pred hccccCCceEEEEECC
Confidence 7643234799999763
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=88.92 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=93.1
Q ss_pred CCChhHHHHHHHHHh------hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcE
Q 041509 23 AKEPNEAEFISALAA------GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHV 94 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~------~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V 94 (211)
+..|++-+++..... ..++..+||+ |||+|..++.++..++ .++|++||.++.++.+|.+|.+ .+.+++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildl-gtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDL-GTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEe-cCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 355777776655433 2355679999 8999999999999996 6999999999999999999998 678889
Q ss_pred EEE----EcchHHHhhhccCCccEEEEcCC--------------------------cC---cHHHHHHHHHhcCCCCcEE
Q 041509 95 EFV----IGDAQSLLLSHFREADFVLIDCN--------------------------LE---NHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 95 ~~~----~gda~e~l~~l~~~fD~VfiD~~--------------------------~~---~y~~~l~~~~~~L~pgG~v 141 (211)
.++ .+|..+..+.+.+++|+++.+.+ -+ .+-.++..+.++|+|||.+
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 888 55666555545789999986531 11 2466777888899998876
Q ss_pred EEEecCCC
Q 041509 142 VVGYNAFR 149 (211)
Q Consensus 142 iv~dn~~~ 149 (211)
..--+...
T Consensus 282 ~le~~~~~ 289 (328)
T KOG2904|consen 282 QLELVERK 289 (328)
T ss_pred EEEecccc
Confidence 65444333
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=87.98 Aligned_cols=94 Identities=22% Similarity=0.137 Sum_probs=77.1
Q ss_pred cCCcC-CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEE
Q 041509 19 MGQKA-KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVE 95 (211)
Q Consensus 19 ~~~~~-~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~ 95 (211)
.+|.. +++...+.+...+...+.+.|||| |||+|..|..++.. +.+|+++|+|+.+++.+++++. +..++++
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEI-G~G~G~LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ 88 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAAIKPTDTVLEI-GPGTGNLTEKLLQL----AKKVIAIEIDPRMVAELKKRFQNSPLASKLE 88 (294)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCEEEEe-cCchHHHHHHHHHh----CCcEEEEECCHHHHHHHHHHHHhcCCCCcEE
Confidence 35554 677787777777777788899999 99999999999875 4689999999999999999987 4457899
Q ss_pred EEEcchHHHhhhccCCccEEEEcCC
Q 041509 96 FVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 96 ~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
++++|+.+.. ...||.|+.+.+
T Consensus 89 ii~~Dal~~~---~~~~d~VvaNlP 110 (294)
T PTZ00338 89 VIEGDALKTE---FPYFDVCVANVP 110 (294)
T ss_pred EEECCHhhhc---ccccCEEEecCC
Confidence 9999998752 357899987654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=87.67 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+.+.|+|+ .||+|+.++.+|... .+.+|+++|.||++.+..++|++ ++.++|+.+++|+.++++ .+.+|.|
T Consensus 99 v~~~e~VlD~-faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDM-FAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRV 173 (200)
T ss_dssp --TT-EEEET-T-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEE
T ss_pred CCcceEEEEc-cCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEE
Confidence 4567899999 699999999999743 26789999999999999999999 667889999999999977 6899999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCc
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG 139 (211)
+++.+.... ++++.+..+++++|
T Consensus 174 im~lp~~~~-~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 174 IMNLPESSL-EFLDAALSLLKEGG 196 (200)
T ss_dssp EE--TSSGG-GGHHHHHHHEEEEE
T ss_pred EECChHHHH-HHHHHHHHHhcCCc
Confidence 999876533 57777788787654
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=84.28 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=83.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC-CCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ-TGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~-~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
.-++..++.+... .....+|||+ |||+|..++.+++.+.. ...+|++||+|+.+++.|++|+. ++.++++|+
T Consensus 34 fTP~~iAr~~~i~--~~~~grVLDl-G~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~ 106 (241)
T PHA03412 34 FTPIGLARDFTID--ACTSGSVVDL-CAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADA 106 (241)
T ss_pred CCCHHHHHHHHHh--ccCCCEEEEc-cChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcch
Confidence 4444556654322 2346799999 89999999999876431 25799999999999999998854 488999999
Q ss_pred HHHhhhccCCccEEEEcCCcC---------------cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 102 QSLLLSHFREADFVLIDCNLE---------------NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~---------------~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.+.. +.++||+|+.+.+-. ....+++.+.+++++ |.+|+-.+.+.
T Consensus 107 ~~~~--~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~~ILP~~~~~ 166 (241)
T PHA03412 107 LTTE--FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ-GTFIIPQMSAN 166 (241)
T ss_pred hccc--ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC-CEEEeCccccc
Confidence 7642 356899999885321 135577788886665 66766566553
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.8e-09 Score=84.51 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=81.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc--cCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH--FREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD~ 119 (211)
.+||| |||.|.+.+.+|..-| +..+++||+....+..|.+.+. ....++.++.+||...+..+ .+++|-|++..
T Consensus 20 l~lEI-G~G~G~~l~~~A~~~P--d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEI-GCGKGEFLIELAKRNP--DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEE-T-TTSHHHHHHHHHST--TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEe-cCCCCHHHHHHHHHCC--CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 78999 9999999999998864 7899999999999999988887 33589999999999988765 47999999964
Q ss_pred CcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 120 NLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 120 ~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+-+ -..+.++.+.+.|+|||.+.+..|
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 211 137899999999999998877665
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=86.99 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=76.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.....+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++++ .+++++++|+.+... ..+||+|+.
T Consensus 62 ~~~~grVLDL-GcGsGilsl~la~r~~--~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 62 AHCTGKVLDL-CAGIGRLSFCMLHRCK--PEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cccCCeEEEc-CCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc--cCCCcEEEE
Confidence 3445789999 8999999888876542 469999999999999999874 368899999998753 468999999
Q ss_pred cCCcC-----------cH------------HHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DCNLE-----------NH------------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~~~~-----------~y------------~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.+.. .| .+.+.....+|+|+|.++++..
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 86431 11 2344555667899998777643
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=88.59 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e 103 (211)
....+-...+-....+..|||.+ +|.|+.|+.+|...+ .+|+++|+||.+.+..++|++ +..++|+.++||+.+
T Consensus 174 rl~~ER~Rva~~v~~GE~V~DmF-AGVGpfsi~~Ak~g~---~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re 249 (341)
T COG2520 174 RLSTERARVAELVKEGETVLDMF-AGVGPFSIPIAKKGR---PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE 249 (341)
T ss_pred CchHHHHHHHhhhcCCCEEEEcc-CCcccchhhhhhcCC---ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH
Confidence 33444443333345589999995 999999999998753 349999999999999999999 556779999999999
Q ss_pred HhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 104 LLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+.+.+ +.+|.|++...+.. .+++..+...+++||.+-. +...
T Consensus 250 v~~~~-~~aDrIim~~p~~a-~~fl~~A~~~~k~~g~iHy-y~~~ 291 (341)
T COG2520 250 VAPEL-GVADRIIMGLPKSA-HEFLPLALELLKDGGIIHY-YEFV 291 (341)
T ss_pred hhhcc-ccCCEEEeCCCCcc-hhhHHHHHHHhhcCcEEEE-Eecc
Confidence 98853 89999999887642 3467777777888665544 4433
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=83.34 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=78.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
..|...+.+.+ +...++.++||+ |||.|--+++||+. |-.|+++|.++..++.+++..+...-.|+..+.|..+
T Consensus 15 ~~~~hs~v~~a-~~~~~~g~~LDl-gcG~GRNalyLA~~----G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~ 88 (192)
T PF03848_consen 15 LTPTHSEVLEA-VPLLKPGKALDL-GCGEGRNALYLASQ----GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND 88 (192)
T ss_dssp B----HHHHHH-CTTS-SSEEEEE-S-TTSHHHHHHHHT----T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC
T ss_pred CCCCcHHHHHH-HhhcCCCcEEEc-CCCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh
Confidence 33444454443 466788999999 99999999999974 7799999999999998887665112239999999876
Q ss_pred HhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.. +.+.||+|+... ..+.....++.+...++|||.+++
T Consensus 89 ~~--~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 89 FD--FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp BS---TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cc--ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 53 357899998642 344567889999999999887665
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=85.75 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+++...+.+...+...+.++|||| |||+|..|..+++. +.+|++||+|+.+++.+++++.. .++++++
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~~~~~~~VLEI-G~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii 80 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAEDTDGDPVLEI-GPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIA-AGNVEII 80 (258)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCeEEEE-eCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhcc-CCCEEEE
Confidence 3554 4678888888877777788999999 99999999999875 46899999999999999998874 4689999
Q ss_pred EcchHHHhhhccCCccEEEEcCC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
++|+.+.- ...||.|+.+.+
T Consensus 81 ~~D~~~~~---~~~~d~Vv~NlP 100 (258)
T PRK14896 81 EGDALKVD---LPEFNKVVSNLP 100 (258)
T ss_pred EeccccCC---chhceEEEEcCC
Confidence 99998752 245899986644
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=77.15 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=85.3
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC-------cEEEEEeCChhHHHHHHHHhc--CCCC
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG-------GRVVCILRRVEEYKLSKKILG--LDAS 92 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~-------g~v~tiE~~~~~~~~Ar~~~~--~~~~ 92 (211)
..+.|..+..|..++...+...|||-+ ||+|..-+..+....... .+++++|+++++++.|++|++ +...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~-CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPF-CGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT--TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecC-CCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 457788898899998888888999995 999988777655543211 149999999999999999998 7778
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEE
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv 143 (211)
.|.+..+|+.++- ...+.+|.|+.|.+-. -|.+.++.+.+.+++ ..+++
T Consensus 89 ~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l 148 (179)
T PF01170_consen 89 YIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFL 148 (179)
T ss_dssp GEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEE
T ss_pred ceEEEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEE
Confidence 8999999999874 2367999999997432 467888888888987 44444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=83.02 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc--CCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAH--QTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~--~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
..|...-.+..+.-..+|+.|+|+ |+.-|-|++|+|.-+. ...++|++||++..........-..+.++|+++.||+
T Consensus 16 q~P~Dm~~~qeli~~~kPd~IIE~-Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 16 QYPQDMVAYQELIWELKPDLIIET-GIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp S-HHHHHHHHHHHHHH--SEEEEE---TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEE-ecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 446666667777788899999999 9999999999876442 1369999999986554433222225578999999997
Q ss_pred HH--Hhhhc-----cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QS--LLLSH-----FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e--~l~~l-----~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+ .+... .....+|+.|+++. +..+.++...+++.+|+-+||.|
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 54 33222 24567999999854 67888888999999977666654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-08 Score=77.97 Aligned_cols=106 Identities=19% Similarity=0.097 Sum_probs=71.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---CCCcEEEEEcchHHHh--hhc-c
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---DASHVEFVIGDAQSLL--LSH-F 109 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---~~~~V~~~~gda~e~l--~~l-~ 109 (211)
...++++|||+ |||+|..++.++... ...+|+..|.++ .++..+.|++ . ...++++..-|-.+-. ..+ .
T Consensus 42 ~~~~~~~VLEL-GaG~Gl~gi~~a~~~--~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLEL-GAGTGLPGIAAAKLF--GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEET-T-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEE-CCccchhHHHHHhcc--CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccc
Confidence 45678999999 999999999998763 267999999999 9999999998 2 3567777765532211 112 4
Q ss_pred CCccEEEEc-C--CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 110 READFVLID-C--NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD-~--~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++||+|+.. . +.+.+...++.+..+|+|+|.++++..
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 589999853 2 455788899999999999999888764
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=89.29 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=68.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc------------
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH------------ 108 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l------------ 108 (211)
..|||+ .||+|..|+.||.. ..+|++||.++++++.|++|++ ...++++|+.+++.++...+
T Consensus 198 ~~vlDl-ycG~G~fsl~la~~----~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~ 272 (352)
T PF05958_consen 198 GDVLDL-YCGVGTFSLPLAKK----AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGI 272 (352)
T ss_dssp TEEEEE-S-TTTCCHHHHHCC----SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS
T ss_pred CcEEEE-eecCCHHHHHHHhh----CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhh
Confidence 479999 69999999999864 5799999999999999999999 55688999999988764321
Q ss_pred ---cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 109 ---FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 109 ---~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
...+|.|++|+++. .....++.+.+ + .-.++|..|.
T Consensus 273 ~~~~~~~d~vilDPPR~G~~~~~~~~~~~-~--~~ivYvSCnP 312 (352)
T PF05958_consen 273 DLKSFKFDAVILDPPRAGLDEKVIELIKK-L--KRIVYVSCNP 312 (352)
T ss_dssp -GGCTTESEEEE---TT-SCHHHHHHHHH-S--SEEEEEES-H
T ss_pred hhhhcCCCEEEEcCCCCCchHHHHHHHhc-C--CeEEEEECCH
Confidence 12689999999876 33556666654 3 4678887774
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-08 Score=80.49 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=84.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc--cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH--FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l--~~~fD~Vfi 117 (211)
...+||| |||.|-+.+.+|..-| .--+++||+....+..|.+.+. ....++.++++||.+++..+ +++.|-|++
T Consensus 49 ~pi~lEI-GfG~G~~l~~~A~~nP--~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 49 APIVLEI-GFGMGEFLVEMAKKNP--EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CcEEEEE-CCCCCHHHHHHHHHCC--CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 3579999 9999999999998875 5689999999999999888887 22349999999999999876 348999988
Q ss_pred cC---Cc------C--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DC---NL------E--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~---~~------~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.. +. + -+...++.+.+.|+|||.+.+..|
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 53 22 1 258899999999999998877654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-08 Score=85.04 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=68.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-C----CCcEEEEEcchHHHhhhccCCcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-D----ASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~----~~~V~~~~gda~e~l~~l~~~fD 113 (211)
++.+|||+ |||+|..++.++.. +.+|+++|++++|++.|+++.+ . . ..+++|..+|..+. .++||
T Consensus 144 ~~~~VLDl-GcGtG~~a~~la~~----g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD 214 (315)
T PLN02585 144 AGVTVCDA-GCGTGSLAIPLALE----GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYD 214 (315)
T ss_pred CCCEEEEe-cCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcC
Confidence 56799999 99999999999863 5799999999999999999986 2 1 24689999997543 57899
Q ss_pred EEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|++-... ......++.+.. +.+ |.+++..
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEe
Confidence 99854221 123345555554 445 4555533
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=81.03 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=76.3
Q ss_pred CCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE
Q 041509 20 GQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~ 98 (211)
++. .+.+...+.+...+...++++|||+ |||+|..|..|+... .+|+++|.|+.+++.+++++.. ..++++++
T Consensus 8 gq~fl~d~~i~~~i~~~~~~~~~~~VLEi-G~G~G~lt~~L~~~~----~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~ 81 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAANVLEGDVVLEI-GPGLGALTEPLLKRA----KKVTAIEIDPRLAEILRKLLSL-YERLEVIE 81 (253)
T ss_pred CCccCCCHHHHHHHHHhcCCCCcCEEEEe-CCCCCHHHHHHHHhC----CcEEEEECCHHHHHHHHHHhCc-CCcEEEEE
Confidence 453 4667777766666666778899999 999999999999764 4699999999999999988763 46799999
Q ss_pred cchHHHhhhccCCcc---EEEEcCCcCcHHHHHHHHH
Q 041509 99 GDAQSLLLSHFREAD---FVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 99 gda~e~l~~l~~~fD---~VfiD~~~~~y~~~l~~~~ 132 (211)
+|+.+... ..+| .|+.+.+...-...+..+.
T Consensus 82 ~D~~~~~~---~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 82 GDALKVDL---PDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred CchhcCCh---hHcCCcceEEEcCChhhHHHHHHHHh
Confidence 99987532 2455 7775544332234444444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=81.61 Aligned_cols=102 Identities=15% Similarity=0.046 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.+++...+.+...+...++++|||+ |||+|..|..|+... .+|+++|+|+++++.+++++.. ++++++++|+.
T Consensus 25 l~~~~i~~~i~~~l~~~~~~~VLEi-G~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~ 97 (272)
T PRK00274 25 LIDENILDKIVDAAGPQPGDNVLEI-GPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDAL 97 (272)
T ss_pred CCCHHHHHHHHHhcCCCCcCeEEEe-CCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhh
Confidence 4667777766666666778899999 999999999998763 4899999999999999998763 68999999998
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHH
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~ 132 (211)
+.-.. .-.+|.|+.+.+-..-...+..+.
T Consensus 98 ~~~~~-~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 98 KVDLS-ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred cCCHH-HcCcceEEEeCCccchHHHHHHHH
Confidence 76221 111477775544222234444444
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=75.71 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=79.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..+++.++|| |||+|+.+.+|++...+ +....++|+||++++..++..+....+++.+..|....+.. ++.|+++.
T Consensus 41 ~~~~~i~lEI-G~GSGvvstfL~~~i~~-~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~--~~VDvLvf 116 (209)
T KOG3191|consen 41 GHNPEICLEI-GCGSGVVSTFLASVIGP-QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN--ESVDVLVF 116 (209)
T ss_pred hcCceeEEEe-cCCcchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc--CCccEEEE
Confidence 3458899999 99999999999999864 78899999999999998888774456699999999988874 89999987
Q ss_pred cCCc------C--------------c----HHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNL------E--------------N----HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~------~--------------~----y~~~l~~~~~~L~pgG~viv 143 (211)
+.+- + + ....+.++..+|.|.|.+++
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 6421 0 0 13445555566778887765
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=82.13 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH--Hhc-------C----
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK--ILG-------L---- 89 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~--~~~-------~---- 89 (211)
.+.|..-+++..+ ...++.+||.. |||.|+-.+|||.. +-+|+++|+++.+++.|.+ +.. .
T Consensus 21 ~~~p~L~~~~~~l-~~~~~~rvLvP-gCG~g~D~~~La~~----G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~ 94 (218)
T PF05724_consen 21 EPNPALVEYLDSL-ALKPGGRVLVP-GCGKGYDMLWLAEQ----GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRY 94 (218)
T ss_dssp TSTHHHHHHHHHH-TTSTSEEEEET-TTTTSCHHHHHHHT----TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEE
T ss_pred CCCHHHHHHHHhc-CCCCCCeEEEe-CCCChHHHHHHHHC----CCeEEEEecCHHHHHHHHHHhccCCCcccccceeee
Confidence 4566666666663 45566789999 99999999999963 6799999999999999832 221 0
Q ss_pred CCCcEEEEEcchHHHhhhccCCccEEEEc-----CCcCcHHHHHHHHHhcCCCCcE
Q 041509 90 DASHVEFVIGDAQSLLLSHFREADFVLID-----CNLENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 90 ~~~~V~~~~gda~e~l~~l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~pgG~ 140 (211)
..++|++++||..+.-+...++||+|+=- -+.+.-.+|.+.+.++|+|||.
T Consensus 95 ~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 95 QAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp TTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred cCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 13578999999998755445689999722 2345678999999999999988
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.9e-08 Score=83.89 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=73.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhcc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~ 109 (211)
+.|..+ ...++..+||. +||.|.-|..+++.+++ .++|+++|.||++++.|++.+.. .++++++++|..++...+.
T Consensus 10 Evl~~L-~~~pg~~vlD~-TlG~GGhS~~il~~~~~-~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 10 EVVDAL-AIKPDGIYVDG-TFGGGGHSRAILERLGP-KGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHhh-CCCCCCEEEEe-CcCChHHHHHHHHhCCC-CCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHH
Confidence 344444 34566789999 89999999999998853 69999999999999999998875 5789999999998865443
Q ss_pred C---CccEEEEcCCcC
Q 041509 110 R---EADFVLIDCNLE 122 (211)
Q Consensus 110 ~---~fD~VfiD~~~~ 122 (211)
. ++|.|++|....
T Consensus 86 ~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 86 EGLGKVDGILLDLGVS 101 (296)
T ss_pred cCCCccCEEEECCCcc
Confidence 3 799999997655
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-07 Score=83.46 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=100.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....+...++...++.+|||+| .+.|-=|..||+.+...++.|+++|.++..+...++|++ |. .++.+++.|
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~c-AAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d 216 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLC-AAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKD 216 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEEC-CCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecc
Confidence 46666777777788888999999997 999999999999987656677999999999999999999 54 458888888
Q ss_pred hHHHhhhc--cCCccEEEEcCCc----------C---------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 101 AQSLLLSH--FREADFVLIDCNL----------E---------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 101 a~e~l~~l--~~~fD~VfiD~~~----------~---------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+....... .++||.|++|++= . ...+.++.+.++|+|||.++.+.+.+.+.
T Consensus 217 ~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 217 ARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred cccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 86553322 2369999999621 0 12678888899999999988877777653
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=81.67 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=80.1
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~ 106 (211)
.++.-.+ ...+.++|||| ||+.||.+..++.+- ...|++||.++......+---+ +. +...+......+-++
T Consensus 105 ~rl~p~l-~~L~gk~VLDI-GC~nGY~~frM~~~G---A~~ViGiDP~~lf~~QF~~i~~~lg~-~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHL-PDLKGKRVLDI-GCNNGYYSFRMLGRG---AKSVIGIDPSPLFYLQFEAIKHFLGQ-DPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhh-CCcCCCEEEEe-cCCCcHHHHHHhhcC---CCEEEEECCChHHHHHHHHHHHHhCC-CccEEEcCcchhhcc
Confidence 3444444 45688999999 999999988887652 4689999999987665432212 32 333344455666667
Q ss_pred hccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 107 SHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 107 ~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
. .+.||.||.=+ ..++..+.++++...|+|||-+++ +...-+
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL-ETlvi~ 223 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVL-ETLVID 223 (315)
T ss_pred c-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEE-EEeeec
Confidence 6 68999999776 334668899999999999887765 554433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.7e-08 Score=78.20 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD 118 (211)
+..+|||+ |||+|..+..++... +..+++||.++++++.|++ .+++++.+|+.+.++.. .++||+|++.
T Consensus 13 ~~~~iLDi-GcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDL-GCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEe-CCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 56789999 999999988887653 4578999999999988864 24788999997744322 5689999987
Q ss_pred CCc---CcHHHHHHHHHhcCC
Q 041509 119 CNL---ENHEGVLRAVQAGNK 136 (211)
Q Consensus 119 ~~~---~~y~~~l~~~~~~L~ 136 (211)
... .+....++++.+.++
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCC
Confidence 542 345667777776554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-07 Score=78.23 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=82.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------------CC
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------------LD 90 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------------~~ 90 (211)
+.|...+.+..+. ..++.+||.. |||.|+-++|||.. +-+|+++|+++.+++.+.+... ..
T Consensus 28 pnp~L~~~~~~l~-~~~~~rvLvP-gCGkg~D~~~LA~~----G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSKLN-INDSSVCLIP-MCGCSIDMLFFLSK----GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHhcC-CCCCCeEEEe-CCCChHHHHHHHhC----CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 3344344444332 2245799999 99999999999963 6789999999999999866321 11
Q ss_pred CCcEEEEEcchHHHhh--hccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 91 ASHVEFVIGDAQSLLL--SHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~--~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..+|++++||..+.-+ ...++||+|+--+ +.+.-.+|.+.+.++|+|||.+++.
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3579999999988632 2246899976432 3345688999999999998886554
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.2e-08 Score=88.56 Aligned_cols=117 Identities=23% Similarity=0.264 Sum_probs=90.1
Q ss_pred HHHHHHHH----HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 28 EAEFISAL----AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 28 ~~~lL~~l----~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
.++.|+.. +.....+.+||+| ||||.+++.+|+. .++|++||++|+.++.|++|.. +..++.+|++|.|+
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~-CGTG~iglala~~----~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVC-CGTGTIGLALARG----VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEe-ecCCceehhhhcc----ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 34555544 3344556789996 9999999988865 4799999999999999999998 55789999999999
Q ss_pred HHhhhccC----Ccc-EEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 103 SLLLSHFR----EAD-FVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 103 e~l~~l~~----~fD-~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.++.+.. .-+ ++++|.++. -....++.+...-++.-.+++..|...
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred hccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 99887733 446 778898765 456667777766556677888888653
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-07 Score=78.55 Aligned_cols=97 Identities=7% Similarity=0.036 Sum_probs=73.0
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhccC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l~~ 110 (211)
+...+|++||=| |.|-|-.+-.+.+ . ..+|+-||+|++.++.+|+++. ++ ..|++++.. ......+
T Consensus 68 ~~h~~pk~VLIi-GGGDGg~~REvLk---h-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~ 138 (262)
T PRK00536 68 CTKKELKEVLIV-DGFDLELAHQLFK---Y-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIK 138 (262)
T ss_pred hhCCCCCeEEEE-cCCchHHHHHHHC---c-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCC
Confidence 344689999999 9999976555554 3 3599999999999999999876 23 568999872 2221137
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+||+|++|.... .++++.+.+.|+|+|.++.
T Consensus 139 ~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 139 KYDLIICLQEPD--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEE
Confidence 899999996432 5777889999999776554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=79.96 Aligned_cols=102 Identities=25% Similarity=0.196 Sum_probs=81.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...+.++|||| |.|.|..+..++++.| +-+++.+|. |+.++.+++ .++|+++.||..+.+| . +|+++
T Consensus 97 d~~~~~~vvDv-GGG~G~~~~~l~~~~P--~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~P---~-~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDV-GGGSGHFAIALARAYP--NLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPLP---V-ADVYL 163 (241)
T ss_dssp TTTTSSEEEEE-T-TTSHHHHHHHHHST--TSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCCS---S-ESEEE
T ss_pred cccCccEEEec-cCcchHHHHHHHHHCC--CCcceeecc-Hhhhhcccc-----ccccccccccHHhhhc---c-cccee
Confidence 34566789999 9999999999999875 679999999 888888887 6899999999985544 3 99999
Q ss_pred EcCC-----cCcHHHHHHHHHhcCCCC--cEEEEEecCCCCC
Q 041509 117 IDCN-----LENHEGVLRAVQAGNKPN--GAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~-----~~~y~~~l~~~~~~L~pg--G~viv~dn~~~~~ 151 (211)
+-.- .++-..+++.+.+.|+|| |.|+|.|.++...
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred eehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 8543 334477899999999998 9999988877643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-07 Score=79.40 Aligned_cols=78 Identities=12% Similarity=0.021 Sum_probs=60.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--CCCcEEEEE-cchHHHhhhc---cCCc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--DASHVEFVI-GDAQSLLLSH---FREA 112 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--~~~~V~~~~-gda~e~l~~l---~~~f 112 (211)
+..++||| |||+|.....|+...+ +.+++++|+|+.+++.|++|++ . +.++|+++. .+..++.... .+.|
T Consensus 114 ~~~~vLDI-GtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDI-GVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEe-cCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 35789999 9999987777766543 6799999999999999999998 4 577899975 4554444321 4689
Q ss_pred cEEEEcCC
Q 041509 113 DFVLIDCN 120 (211)
Q Consensus 113 D~VfiD~~ 120 (211)
|+|+.+.+
T Consensus 191 DlivcNPP 198 (321)
T PRK11727 191 DATLCNPP 198 (321)
T ss_pred EEEEeCCC
Confidence 99998764
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=74.16 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=78.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||-|..-.-|+..- -.+.++++|.+++++++|+...+ ++.+.|+|...|..+- ....++||+|
T Consensus 65 ~~~A~~VlDL-GtGNG~~L~~L~~eg--f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlv 140 (227)
T KOG1271|consen 65 SKQADRVLDL-GTGNGHLLFQLAKEG--FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLV 140 (227)
T ss_pred cccccceeec-cCCchHHHHHHHHhc--CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEE
Confidence 3456699999 999998877777643 24679999999999999987666 6777899999998764 2234566666
Q ss_pred E---------EcCCc--CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 116 L---------IDCNL--ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 116 f---------iD~~~--~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
. +.++. ....-|+..+.++|+|+|.++|..+-+.
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 4 32222 2234577777888999999888664333
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-07 Score=78.46 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=66.9
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
.|++|+=| |+| .-.++++|+.... .+..|+++|+||++.+.|++-++ ++..+++|+++|+.+.... ...||.|
T Consensus 120 ~p~rVaFI-GSGPLPlT~i~la~~~~-~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFI-GSGPLPLTSIVLAKQHG-PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVV 196 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--HT-T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEE
T ss_pred ccceEEEE-cCCCcchHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEE
Confidence 46799999 998 5677777886532 26789999999999999998877 5688999999999876433 4689999
Q ss_pred EEcCCcC----cHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLE----NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~----~y~~~l~~~~~~L~pgG~viv 143 (211)
|+.+-.+ ...+.++.+.+.++||..+++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9998665 889999999999998554444
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=81.21 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=74.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.+.|||+ |||+|..+++.|+|. ..+|++||.+.- ++.|++.+. ++.+.|+++.|.+.++ .| .++.|.
T Consensus 58 lf~dK~VlDV-GcGtGILS~F~akAG---A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDV-GCGTGILSMFAAKAG---ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDI--ELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEc-CCCccHHHHHHHHhC---cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEE--ecCccceeE
Confidence 4678999999 999999999999885 579999999864 589999988 6788899999999987 24 489999
Q ss_pred EEEcCCcC--cHHHHHHHH----HhcCCCCcEE
Q 041509 115 VLIDCNLE--NHEGVLRAV----QAGNKPNGAV 141 (211)
Q Consensus 115 VfiD~~~~--~y~~~l~~~----~~~L~pgG~v 141 (211)
|+....-. .|+..++.+ -+.|+|||.+
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceE
Confidence 98664321 234444433 3348887754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-07 Score=77.23 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=76.6
Q ss_pred HHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCC-----------------
Q 041509 31 FISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDAS----------------- 92 (211)
Q Consensus 31 lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~----------------- 92 (211)
.|..|-. -..++.+||| ||-+|..|+.+|.-.. ...|.++|+|+..++.|+++++...+
T Consensus 48 rLk~L~~~~f~~~~~LDI-GCNsG~lt~~iak~F~--~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDI-GCNSGFLTLSIAKDFG--PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred hhhhccccccCcceeEec-cCCcchhHHHHHHhhc--cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 3444422 2468889999 9999999999999885 47899999999999999999871110
Q ss_pred -------------------cEEEEEcc----hHHHhhhccCCccEEEEcC---------CcCcHHHHHHHHHhcCCCCcE
Q 041509 93 -------------------HVEFVIGD----AQSLLLSHFREADFVLIDC---------NLENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 93 -------------------~V~~~~gd----a~e~l~~l~~~fD~VfiD~---------~~~~y~~~l~~~~~~L~pgG~ 140 (211)
++.|..++ ..++|......||.|+.=. ..+....+++.+.++|.|||.
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 12222111 2223322256899998532 222468899999999999887
Q ss_pred EEE
Q 041509 141 VVV 143 (211)
Q Consensus 141 viv 143 (211)
+++
T Consensus 205 Lvv 207 (288)
T KOG2899|consen 205 LVV 207 (288)
T ss_pred EEE
Confidence 766
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-07 Score=80.24 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=79.7
Q ss_pred HHHHHHHHhhCCCC-eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC-CCcEEEEEcchHHHh
Q 041509 29 AEFISALAAGNNAQ-LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD-ASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~~~~-~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~-~~~V~~~~gda~e~l 105 (211)
..++..++...+.. .++|+ |||+|..+.-+|+. --+|+++|++++|+++|++... .. ....++...+..+++
T Consensus 21 tdw~~~ia~~~~~h~~a~Dv-G~G~Gqa~~~iae~----~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~ 95 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDV-GTGNGQAARGIAEH----YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL 95 (261)
T ss_pred HHHHHHHHhhCCCcceEEEe-ccCCCcchHHHHHh----hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc
Confidence 56777777766655 68999 99999766667765 3589999999999999998876 11 223444444444443
Q ss_pred hhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEE
Q 041509 106 LSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.. +++.|+|..--... +.+++++.+.+.||+.|+++.+
T Consensus 96 g~-e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 GG-EESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CC-CcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 32 67999998654433 5689999999999998866554
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.6e-07 Score=70.76 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
.++.+...+....+..|||+ |.|||..|-.+.+..-+ ...+++||.+++....-.+.+.+ +.+++||+.+.-..
T Consensus 36 lA~~M~s~I~pesglpVlEl-GPGTGV~TkaIL~~gv~-~~~L~~iE~~~dF~~~L~~~~p~----~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLEL-GPGTGVITKAILSRGVR-PESLTAIEYSPDFVCHLNQLYPG----VNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEE-cCCccHhHHHHHhcCCC-ccceEEEEeCHHHHHHHHHhCCC----ccccccchhhHHHH
Confidence 45555555555667789999 99999999997665433 68899999999999888877553 56999999876422
Q ss_pred c----cCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H----FREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l----~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ +..||.|+..-+.- .-.++++.+...|.+||.++-..
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 2 34789999765432 34778999999999988776543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-07 Score=72.85 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=60.8
Q ss_pred EEEeCChhHHHHHHHHhc----CCCCcEEEEEcchHHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 71 VCILRRVEEYKLSKKILG----LDASHVEFVIGDAQSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 71 ~tiE~~~~~~~~Ar~~~~----~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+++|++++|++.|+++.+ +...+|++++||+.+. +..+++||+|++... ..+..+.++++.+.|+|||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 479999999999987764 2245799999999876 433678999998753 34678899999999999999988
Q ss_pred Eec
Q 041509 144 GYN 146 (211)
Q Consensus 144 ~dn 146 (211)
.|-
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 774
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-08 Score=81.99 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.++....++|..+-. .+-+++||+ |||||.++..|-.. ..++++||+|+.|++.|.+. + ..=++.++|+.
T Consensus 109 ~vP~~l~emI~~~~~-g~F~~~lDL-GCGTGL~G~~lR~~----a~~ltGvDiS~nMl~kA~eK--g--~YD~L~~Aea~ 178 (287)
T COG4976 109 SVPELLAEMIGKADL-GPFRRMLDL-GCGTGLTGEALRDM----ADRLTGVDISENMLAKAHEK--G--LYDTLYVAEAV 178 (287)
T ss_pred ccHHHHHHHHHhccC-Cccceeeec-ccCcCcccHhHHHH----HhhccCCchhHHHHHHHHhc--c--chHHHHHHHHH
Confidence 444445555555433 336799999 99999988877543 46899999999999999764 2 22345677887
Q ss_pred HHhhhc-cCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 103 SLLLSH-FREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 103 e~l~~l-~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+++.+ +++||+|...- -..+....+-.+..+|+|||.+.+.-..+
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 777643 67999997421 12345677777888899988777654433
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.7e-07 Score=76.93 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
.++.....+...++...+...|||+| ++.|-=|..+|+.+.. .|+|++.|+++..+...+++++ -...++.++..|+
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~C-AapGgKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~ 145 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMC-AAPGGKTTHLAELMGN-KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA 145 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESS-CTTSHHHHHHHHHTTT-TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH
T ss_pred Eecccccccccccccccccccccccc-cCCCCceeeeeecccc-hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc
Confidence 34444556666667777888999997 9999999999998864 7999999999999999999998 3256788888999
Q ss_pred HHHhhhc-cCCccEEEEcCCc---------C----------------cHHHHHHHHHhcC----CCCcEEEEEecCCCCC
Q 041509 102 QSLLLSH-FREADFVLIDCNL---------E----------------NHEGVLRAVQAGN----KPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~l-~~~fD~VfiD~~~---------~----------------~y~~~l~~~~~~L----~pgG~viv~dn~~~~~ 151 (211)
....+.. ...||.|++|++= + ...+.++.+.+.+ +|||.++-+...+.+.
T Consensus 146 ~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 146 RKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp HHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred ccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 8886544 3469999999631 0 0266888889999 9999888777666543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-07 Score=85.08 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC--CCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ--TGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~--~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.|+++ |||+|......++|... ...+|++||.||.+....++.++ +..++|+++.||..++-. .++.|+|+
T Consensus 187 ~~vVldV-GAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDV-GAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIV 263 (448)
T ss_dssp T-EEEEE-S-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEE
T ss_pred ceEEEEe-CCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEE
Confidence 4679999 99999988776665421 13699999999988877666544 678899999999998743 57999998
Q ss_pred EcC-----CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDC-----NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~-----~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
... ..+.-.+.+....+.|+|+| +++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~G-i~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDG-IMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEE-EEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCC-EEe
Confidence 652 33455788888888999965 554
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-07 Score=78.70 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=92.8
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEEc-c
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVIG-D 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~g-d 100 (211)
.++|..++.+..|++..+++.|||=. ||||...+... + -+.+++++|++..|++-|+.|++.+ .....+..+ |
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPF-cGTGgiLiEag--l--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D 254 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPF-CGTGGILIEAG--L--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD 254 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCc-CCccHHHHhhh--h--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence 68899999999999999999999995 88887544433 2 3899999999999999999999922 345555555 9
Q ss_pred hHHHhhhccC-CccEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 101 AQSLLLSHFR-EADFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 101 a~e~l~~l~~-~fD~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|... + +.+ ++|-|..|.+- +.|.+.++.+.+.|++||.++++-+
T Consensus 255 a~~l-p-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 255 ATNL-P-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccC-C-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8876 4 434 59999999642 1378899999999999887776554
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.8e-07 Score=72.81 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=68.3
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F 109 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~ 109 (211)
.+..++. +..+|||+ |||.|..-.+|... .+.+.++||+|++.+..+.+ .-+.++.+|+.+.|... +
T Consensus 6 ~I~~~I~--pgsrVLDL-GCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~------rGv~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEWIE--PGSRVLDL-GCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVA------RGVSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHcC--CCCEEEec-CCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHH------cCCCEEECCHHHhHhhCCC
Confidence 3444443 56899999 99999876666553 37889999999998766643 23679999999988755 7
Q ss_pred CCccEEEEcCCcC---cHHHHHHHHHhc
Q 041509 110 READFVLIDCNLE---NHEGVLRAVQAG 134 (211)
Q Consensus 110 ~~fD~VfiD~~~~---~y~~~l~~~~~~ 134 (211)
++||.|++.-... +....++++.+.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence 7999999986544 345667777664
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-07 Score=75.85 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=74.3
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+++...+-+...+...+.++|||| |+|.|..|..|++. +.+|++||+|+.+++.-++.+. ..++++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEI-GpG~GaLT~~Ll~~----~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi 81 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANISPGDNVLEI-GPGLGALTEPLLER----AARVTAIEIDRRLAEVLKERFA-PYDNLTVI 81 (259)
T ss_pred cccccccCHHHHHHHHHhcCCCCCCeEEEE-CCCCCHHHHHHHhh----cCeEEEEEeCHHHHHHHHHhcc-cccceEEE
Confidence 3554 3556666666667777778899999 99999999999976 5689999999999999988876 35789999
Q ss_pred EcchHHHhhhccC--CccEEEEcCC
Q 041509 98 IGDAQSLLLSHFR--EADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~l~~l~~--~fD~VfiD~~ 120 (211)
+||++..-. .. .++.|+-+-+
T Consensus 82 ~~DaLk~d~--~~l~~~~~vVaNlP 104 (259)
T COG0030 82 NGDALKFDF--PSLAQPYKVVANLP 104 (259)
T ss_pred eCchhcCcc--hhhcCCCEEEEcCC
Confidence 999997632 22 6788885543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=73.39 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHHhhCCCC--eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C------C---CCcEEE
Q 041509 29 AEFISALAAGNNAQ--LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L------D---ASHVEF 96 (211)
Q Consensus 29 ~~lL~~l~~~~~~~--~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~------~---~~~V~~ 96 (211)
++.|...+...+.. +|||. -+|+|.-++.++.. +++|+.||.+|..+.+.+.+++ . . ..++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~-TAGlG~Da~~las~----G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDA-TAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEEC-CCCccHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 45666666656656 89999 59999999988864 6789999999999999999987 2 1 257999
Q ss_pred EEcchHHHhhhccCCccEEEEcCCc
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+++|+.+.|......||+||+|...
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCC
Confidence 9999999998766689999999743
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=75.43 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=95.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh--c------CCCCcEEEEEcchHHHhhhccC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL--G------LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~--~------~~~~~V~~~~gda~e~l~~l~~ 110 (211)
..+++||-+ |.|-|...-.|.+. | .-++|+-+|.||+|++.++.+. + ....+++++..||...+..-.+
T Consensus 288 ~~a~~vLvl-GGGDGLAlRellky-P-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVL-GGGDGLALRELLKY-P-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEE-cCCchHHHHHHHhC-C-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 567899999 99999654445432 2 2689999999999999999554 2 1256899999999999987778
Q ss_pred CccEEEEcCCcC-------cH-HHHHHHHHhcCCCCcEEEEEe-cCCC-CC-cee------cCCCc----EEEe-ecCC-
Q 041509 111 EADFVLIDCNLE-------NH-EGVLRAVQAGNKPNGAVVVGY-NAFR-KG-SWR------SSGSK----SQLL-PIGE- 167 (211)
Q Consensus 111 ~fD~VfiD~~~~-------~y-~~~l~~~~~~L~pgG~viv~d-n~~~-~~-~~~------~~~~~----~v~l-pig~- 167 (211)
.||+|++|-..+ -| .+++..+.+.|+++|.+++-- +.+. +. -|+ +.++. -+.+ .+|+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeW 444 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEW 444 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccccc
Confidence 999999996432 24 778899999999988776632 2332 22 243 23332 1223 3565
Q ss_pred cEEEEEEec
Q 041509 168 GLLVTRIAA 176 (211)
Q Consensus 168 Gl~v~~~~~ 176 (211)
|+.++.+..
T Consensus 445 Gf~l~~~~~ 453 (508)
T COG4262 445 GFILAAPGD 453 (508)
T ss_pred ceeeccccc
Confidence 777776655
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-07 Score=76.36 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=76.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH-HHhhhc--cCCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ-SLLLSH--FREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~-e~l~~l--~~~fD~Vf 116 (211)
.+..|||+ |||.|-+..-|.+..+.++-+|+++|.+|.+++..+++-.-..+++.-.+-|.. +-+... .+.+|+|.
T Consensus 71 ~~~~ilEv-GCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 71 SAETILEV-GCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred Chhhheee-ccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEE
Confidence 34579999 999999888898887665689999999999999999987622344444444432 112211 56888775
Q ss_pred Ec----C-CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 ID----C-NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD----~-~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+= + .++.....++.+.++|+|||.+++.|
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 32 2 34467889999999999999988876
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-06 Score=65.69 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHH-HHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANA-TTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~-stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~ 106 (211)
.+++|.......+.+++||| |||+|+ .+..|++ .+..|+++|++|+..+.|+++ .++++.+|..+--.
T Consensus 4 i~~~l~~~~~~~~~~kileI-G~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVEL-GIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEE-EecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH
Confidence 45666665555566889999 999997 5556663 267999999999998888765 36788999877655
Q ss_pred hccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 SHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+-+.+|+|..==..++....+..+.+.+ +--+++
T Consensus 73 ~~y~~a~liysirpp~el~~~~~~la~~~--~~~~~i 107 (134)
T PRK04148 73 EIYKNAKLIYSIRPPRDLQPFILELAKKI--NVPLII 107 (134)
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 55789999996555555555555554444 333454
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=73.91 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC--CCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL--DASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~--~~~~V~~~~gda 101 (211)
.-|.+..-+..-+...+++.|||+ |.|||..|..|.++ +.+|+++|+||.|+....+.++| .+.+.++++||.
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEv-GPGTGnLT~~lLe~----~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~ 116 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEV-GPGTGNLTVKLLEA----GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF 116 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEe-CCCCCHHHHHHHHh----cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc
Confidence 335666666666778889999999 99999999999987 57999999999999999998884 468999999999
Q ss_pred HHHhhhccCCccEEEEcC
Q 041509 102 QSLLLSHFREADFVLIDC 119 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~ 119 (211)
...- ...||.++.+.
T Consensus 117 lK~d---~P~fd~cVsNl 131 (315)
T KOG0820|consen 117 LKTD---LPRFDGCVSNL 131 (315)
T ss_pred ccCC---CcccceeeccC
Confidence 7652 24688888653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.9e-06 Score=77.77 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=82.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
.+...+||| |||.|-+++.+|...| +..+++||+....+..|.+... ....++.++.+|+..+...+ .+++|-|+
T Consensus 346 ~~~p~~lEI-G~G~G~~~~~~A~~~p--~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEI-GFGMGEHFINQAKMNP--DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEE-CCCchHHHHHHHHhCC--CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 345679999 9999999999998864 6789999999998887777765 33478999999986655444 56899999
Q ss_pred EcC---Cc--C------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDC---NL--E------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~---~~--~------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.. +. + -..+.++.+.+.|+|||.+.+..|
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 864 31 1 137899999999999998877655
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=68.84 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=80.8
Q ss_pred cCCcCCChhHHH-HHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE
Q 041509 19 MGQKAKEPNEAE-FISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV 94 (211)
Q Consensus 19 ~~~~~~~~~~~~-lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V 94 (211)
+.|+.-.|+.+. +++.+-. ...++.++|+ |||+|...+ +.+.+. ...|.++|++|++++.+++|..-+.-++
T Consensus 23 LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DL-gcgcGmLs~--a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfEvqi 98 (185)
T KOG3420|consen 23 LEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDL-GCGCGMLSI--AFSMPK-NESVLGFDIDPEALEIFTRNAEEFEVQI 98 (185)
T ss_pred hhhCCCcHHHHHHHHHHHHhhhccccCcchhhh-cCchhhhHH--HhhcCC-CceEEeeecCHHHHHHHhhchHHhhhhh
Confidence 456777788764 4444422 2567899999 899999764 444543 6889999999999999999998445567
Q ss_pred EEEEcchHHHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhc
Q 041509 95 EFVIGDAQSLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAG 134 (211)
Q Consensus 95 ~~~~gda~e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~ 134 (211)
++++.|..+.... .+.||-+++|.+.+ .-.++++..+++
T Consensus 99 dlLqcdildle~~-~g~fDtaviNppFGTk~~~aDm~fv~~al~~ 142 (185)
T KOG3420|consen 99 DLLQCDILDLELK-GGIFDTAVINPPFGTKKKGADMEFVSAALKV 142 (185)
T ss_pred heeeeeccchhcc-CCeEeeEEecCCCCcccccccHHHHHHHHHH
Confidence 9999999887664 58999999997643 124455555443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=72.28 Aligned_cols=94 Identities=20% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCChh-HHHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 23 AKEPN-EAEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 23 ~~~~~-~~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
.++|+ .+..++..+. -.++..|+|. =||.|-.|+-.|.. +..|++||+||..+..||.|++ |..++|+|++
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iida-f~g~gGntiqfa~~----~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDA-FCGVGGNTIQFALQ----GPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhh-hhcCCchHHHHHHh----CCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 35554 3555554433 3377889998 36666677777653 5689999999999999999999 8888999999
Q ss_pred cchHHHhhhc---cCCccEEEEcCCc
Q 041509 99 GDAQSLLLSH---FREADFVLIDCNL 121 (211)
Q Consensus 99 gda~e~l~~l---~~~fD~VfiD~~~ 121 (211)
||.+++...+ ...+|+||+-++-
T Consensus 150 GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred chHHHHHHHHhhhhheeeeeecCCCC
Confidence 9999988766 3457899987643
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-06 Score=68.70 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=77.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+++|| |||.|+=++-||-+.| +.+++.+|.+...+..-+.-.. ++ ++++++++++.+ +...++||+|+.=+-
T Consensus 51 ~~lDi-GSGaGfPGipLaI~~p--~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDI-GSGAGFPGIPLAIARP--DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEE-TSTTTTTHHHHHHH-T--TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TTTTT-EEEEEEESS
T ss_pred eEEec-CCCCCChhHHHHHhCC--CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--cccCCCccEEEeehh
Confidence 79999 9999999999998875 6899999999999988888777 54 589999999998 333689999997664
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. .....++.+.+++++||.++...
T Consensus 125 ~-~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 A-PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp S-SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred c-CHHHHHHHHHHhcCCCCEEEEEc
Confidence 4 46788999999999988766643
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=72.64 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHhh-----CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHH
Q 041509 30 EFISALAAG-----NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQS 103 (211)
Q Consensus 30 ~lL~~l~~~-----~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e 103 (211)
.||..+... .+..+.||. |+|+|-.|-.+.. +.--+|.-||..+.+++.|++++. ......++.+--..+
T Consensus 40 ~FL~~l~~~~~~~~~~~~~alDc-GAGIGRVTk~lLl---~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~ 115 (218)
T PF05891_consen 40 NFLKKLKRGRKPGKPKFNRALDC-GAGIGRVTKGLLL---PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQD 115 (218)
T ss_dssp HHHHCCCT---------SEEEEE-T-TTTHHHHHTCC---CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG
T ss_pred HHHHHHHhhcccCCCCcceEEec-ccccchhHHHHHH---HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhh
Confidence 455554333 245679999 9999999877643 235799999999999999999887 334456777777777
Q ss_pred HhhhccCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 104 LLLSHFREADFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.-|. .++||+|.+--- -.+..++++.+...|+|+|.|+|=+|+...+
T Consensus 116 f~P~-~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 116 FTPE-EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp -----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred ccCC-CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 7664 579999998632 2367899999999999999888888987765
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-06 Score=74.66 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=76.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+.+.|||+ |||+|..+.+.|.|- ..+|++||.+ +|++.|++.++ .+.++|.++.|...|+- +.++.|+|
T Consensus 175 DF~~kiVlDV-GaGSGILS~FAaqAG---A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDV-GAGSGILSFFAAQAG---AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVI 247 (517)
T ss_pred ccCCcEEEEe-cCCccHHHHHHHHhC---cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEE
Confidence 3567889999 999999998888774 5799999997 58999999988 56899999999999872 57899999
Q ss_pred EEcCCcC-----cHHHHHHHHHhcCCCCcEEE
Q 041509 116 LIDCNLE-----NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 116 fiD~~~~-----~y~~~l~~~~~~L~pgG~vi 142 (211)
+.....- ...+-+-.+.+.|+|+|..+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9765321 12333334557799988643
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=71.88 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=74.8
Q ss_pred HHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 29 AEFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 29 ~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
.+-|..++.. .++..|||| |||+|.|+-.|.. .+-..+++|++|.|+++|.+. . +. -.++.+|--+-+|.
T Consensus 38 eRaLELLalp~~~~~~iLDI-GCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~-e-~e--gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDI-GCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVER-E-LE--GDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEe-ccCCCcchheecc----CCceEEeecCCHHHHHHHHHh-h-hh--cCeeeeecCCCCCC
Confidence 3344444332 247789999 9999999887764 356789999999999999862 1 11 34778888888886
Q ss_pred ccCCccEEEE--------cCCcC------cHHHHHHHHHhcCCCCcEEEE
Q 041509 108 HFREADFVLI--------DCNLE------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 108 l~~~fD~Vfi--------D~~~~------~y~~~l~~~~~~L~pgG~viv 143 (211)
-.++||-++. +++++ ....++..+...|++|+..++
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 6889998874 23332 235678888888888776544
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=6e-06 Score=68.58 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=71.2
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
|.|| ||--||..++|.+.-. ..+++++|+++.-++.|+++++ ++.++|+++.||.++.++. .+..|.|+|.+--
T Consensus 1 vaDI-GtDHgyLpi~L~~~~~--~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADI-GTDHGYLPIYLLKNGK--APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMG 76 (205)
T ss_dssp EEEE-T-STTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred Ccee-ccchhHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCC
Confidence 6899 8999999999997642 4689999999999999999998 7789999999999998763 4458999998765
Q ss_pred C-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 122 E-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 122 ~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. .-.+.++.....+++...+++.-|
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 5 346677777666655445666444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.5e-05 Score=63.62 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=85.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.++.+||++ |=|.|...-.+-++- .-+-+-||.+|+..+..|++--.-.++|-++.|.-.+.++.+ ++.||-|+-
T Consensus 100 tkggrvLnV-GFGMgIidT~iQe~~---p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNV-GFGMGIIDTFIQEAP---PDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEe-ccchHHHHHHHhhcC---CcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 688999999 999998777776552 357788999999998887764445688999999999998877 678999999
Q ss_pred cCCcCcH---HHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 118 DCNLENH---EGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 D~~~~~y---~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|.-.+.| .+..+.+.++|+|+|. +-.-|.+..+
T Consensus 176 DTy~e~yEdl~~~hqh~~rLLkP~gv-~SyfNg~~~~ 211 (271)
T KOG1709|consen 176 DTYSELYEDLRHFHQHVVRLLKPEGV-FSYFNGLGAD 211 (271)
T ss_pred echhhHHHHHHHHHHHHhhhcCCCce-EEEecCcccc
Confidence 9886655 5577889999999764 4446766554
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=72.67 Aligned_cols=128 Identities=12% Similarity=0.008 Sum_probs=84.2
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc-----CCCcEEEEEeCChhHHHHHHHHhc--CC-CC
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAH-----QTGGRVVCILRRVEEYKLSKKILG--LD-AS 92 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~-----~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~ 92 (211)
+..-++..++++..++...+..+|+|-| ||+|.+-+.+...+. ....+++++|+++.++..|+.|+. +. ..
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPa-cGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPA-CGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT--TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred eeehHHHHHHHHHhhhhccccceeechh-hhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3456666789999999888888899994 999998777666431 136799999999999999998876 32 33
Q ss_pred cEEEEEcchHHHhhhc-cCCccEEEEcCCcCc------------------------HHHHHHHHHhcCCCCcEE--EEEe
Q 041509 93 HVEFVIGDAQSLLLSH-FREADFVLIDCNLEN------------------------HEGVLRAVQAGNKPNGAV--VVGY 145 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~------------------------y~~~l~~~~~~L~pgG~v--iv~d 145 (211)
...+..+|........ ...||+|+.+.+... ...+++.+...|+++|.+ ++.+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4678999987653322 468999998753210 124778889999998864 4434
Q ss_pred cCCC
Q 041509 146 NAFR 149 (211)
Q Consensus 146 n~~~ 149 (211)
..+.
T Consensus 186 ~~L~ 189 (311)
T PF02384_consen 186 GFLF 189 (311)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.9e-06 Score=68.04 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=69.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE---
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI--- 117 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi--- 117 (211)
..+.|+ |+|+|..+...|.+ .-+|++||.||..++.|++|++ ....++++++|||.+.- .+..|.|..
T Consensus 34 d~~~DL-GaGsGiLs~~Aa~~----A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---fe~ADvvicEml 105 (252)
T COG4076 34 DTFADL-GAGSGILSVVAAHA----AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---FENADVVICEML 105 (252)
T ss_pred hceeec-cCCcchHHHHHHhh----hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc---ccccceeHHHHh
Confidence 778999 99999998888876 3689999999999999999998 55688999999998773 256787753
Q ss_pred cCCc--CcHHHHHHHHHhcCCCCcEEE
Q 041509 118 DCNL--ENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 118 D~~~--~~y~~~l~~~~~~L~pgG~vi 142 (211)
|... +.....++.+...||-.+.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 3221 223445555555666555543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=67.57 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=80.3
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+.+..++.+...+...+...|||| |+|+|..|-.|+... .+|++||.|+.+.+..++.+. ...+++++
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEi-GpG~G~lT~~L~~~~----~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi 81 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALDLSEGDTVLEI-GPGPGALTRELLKRG----KRVIAVEIDPDLAKHLKERFA-SNPNVEVI 81 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHTCGTTSEEEEE-SSTTSCCHHHHHHHS----SEEEEEESSHHHHHHHHHHCT-TCSSEEEE
T ss_pred CCcCeeCCHHHHHHHHHhcCCCCCCEEEEe-CCCCccchhhHhccc----CcceeecCcHhHHHHHHHHhh-hcccceee
Confidence 3454 3567788888888777788999999 999999999998864 799999999999999998776 35789999
Q ss_pred EcchHHHhhhc--cCCccEEEEcCCcCcHHHHHHHHHh
Q 041509 98 IGDAQSLLLSH--FREADFVLIDCNLENHEGVLRAVQA 133 (211)
Q Consensus 98 ~gda~e~l~~l--~~~fD~VfiD~~~~~y~~~l~~~~~ 133 (211)
++|+.++-... ......|+-.-+...-..++..+..
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred ecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 99998763321 2345566654443333455555554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-05 Score=74.61 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=70.9
Q ss_pred CChhHHHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHcc--------------------------------------
Q 041509 24 KEPNEAEFISALAAG-NNAQLMVVACANVANATTLALAAAAH-------------------------------------- 64 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~-------------------------------------- 64 (211)
+.+..+.-+-.++.- .+...++|- .||+|...+..|..+.
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP-~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDP-MCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEcc-CCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 445555544455543 346789999 7999988777665321
Q ss_pred --CCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCC
Q 041509 65 --QTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFVLIDCN 120 (211)
Q Consensus 65 --~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~ 120 (211)
....+++++|+|+++++.|++|+. ++.+.|+|..+|+.+..... .+.||+|+.+.+
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 012479999999999999999998 77788999999998864322 257999999965
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=66.38 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=78.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCC-ccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFRE-ADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~-fD~VfiD 118 (211)
+++++|| |+|.|+=++-||-..+ +.+||-+|.....+..-++-.+ -..++++++++.++++-.+ .+ ||+|..=
T Consensus 68 ~~~~~DI-GSGaGfPGipLAI~~p--~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~--~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDI-GSGAGFPGIPLAIAFP--DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE--KKQYDVVTSR 142 (215)
T ss_pred CCEEEEe-CCCCCCchhhHHHhcc--CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc--cccCcEEEee
Confidence 6899999 9999999999996654 5779999999998888887766 2357899999999998543 23 9999865
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+= .......+.+.+++++||.++.
T Consensus 143 Av-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hc-cchHHHHHHHHHhcccCCcchh
Confidence 43 2466788999999999887654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=64.55 Aligned_cols=92 Identities=8% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHH-HHHHhc-C--CCCcEEEEEcchHHHhhhccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKL-SKKILG-L--DASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~-Ar~~~~-~--~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
.+.+.|||+ |||+|+.|.++++. ..++|++||.+++++.. .+++.+ - ...+++ .-+..+..+. ...+|+
T Consensus 74 ~~~~~vlDi-G~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d-~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDV-GSSTGGFTDCALQK---GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPD-FATFDV 146 (228)
T ss_pred CCCCEEEEc-ccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCC-ceeeeE
Confidence 356789999 99999999999975 24799999999976654 443322 0 112333 1122222111 235666
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+|+... ..+..+.+.|+| |.++.
T Consensus 147 sfiS~~-----~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 147 SFISLI-----SILPELDLLLNP-NDLTL 169 (228)
T ss_pred EEeehH-----hHHHHHHHHhCc-CeEEE
Confidence 665443 357777777887 55443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.1e-05 Score=58.99 Aligned_cols=85 Identities=19% Similarity=0.100 Sum_probs=63.1
Q ss_pred HHHHHHHHhh----CCCCeEEEEccccHHHHHHHHHHHcc--CCCcEEEEEeCChhHHHHHHHHhc--C--CCCcEEEEE
Q 041509 29 AEFISALAAG----NNAQLMVVACANVANATTLALAAAAH--QTGGRVVCILRRVEEYKLSKKILG--L--DASHVEFVI 98 (211)
Q Consensus 29 ~~lL~~l~~~----~~~~~VLEi~Gtg~G~stl~la~a~~--~~~g~v~tiE~~~~~~~~Ar~~~~--~--~~~~V~~~~ 98 (211)
++++..++.. .++..|+|+ |+|-||.+..|+..++ ..+-+|++||.+++..+.|.+..+ . ...++++..
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~-GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDL-GSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQ 88 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEe-CCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhc
Confidence 4556666555 778899999 8999999999998442 136899999999999999988877 3 346788888
Q ss_pred cchHHHhhhccCCccEEE
Q 041509 99 GDAQSLLLSHFREADFVL 116 (211)
Q Consensus 99 gda~e~l~~l~~~fD~Vf 116 (211)
++..+... ....++++
T Consensus 89 ~~~~~~~~--~~~~~~~v 104 (141)
T PF13679_consen 89 GDIADESS--SDPPDILV 104 (141)
T ss_pred cchhhhcc--cCCCeEEE
Confidence 87765432 34445554
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=63.26 Aligned_cols=117 Identities=10% Similarity=0.033 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH-
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL- 104 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~- 104 (211)
..+-+..+....+|-+||||| ||.|---+-.....+...-+|.-.|.+|..++..++.++ ++.+.++|.++||.+.
T Consensus 123 i~~ai~~L~~~g~pvrIlDIA-aG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 123 IRQAIARLREQGRPVRILDIA-AGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD 201 (311)
T ss_pred HHHHHHHHHhcCCceEEEEec-cCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh
Confidence 334455555556888999995 999976555555554323689999999999999999998 7778789999999775
Q ss_pred -hhhccCCccEEEEcCCcCc------HHHHHHHHHhcCCCCcEEEEEec
Q 041509 105 -LLSHFREADFVLIDCNLEN------HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 105 -l~~l~~~fD~VfiD~~~~~------y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..+...++++++.+-.+. ..+-+.-+...+.|||.+|. .|
T Consensus 202 ~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy-Tg 249 (311)
T PF12147_consen 202 SLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY-TG 249 (311)
T ss_pred HhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE-cC
Confidence 4444667899999874432 34467777778899876654 44
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.9e-05 Score=60.63 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=46.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
.++|+ ||++|+.+++++...+ .++++++|.+|++.+.++++++ ....+++++.....
T Consensus 1 ~vlDi-Ga~~G~~~~~~~~~~~--~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDV-GANIGDTSLYFARKGA--EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEc-cCCccHHHHHHHHhCC--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 38999 9999999999998753 4699999999999999999987 22245777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=64.46 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=71.0
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-- 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-- 108 (211)
.|..+ ...++..++|. -+|-|--|..++..++ .|+|+++|.||++++.|++.++.+.+++++++++..++...+
T Consensus 12 vl~~L-~~~~ggiyVD~-TlG~GGHS~~iL~~l~--~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 12 VVEGL-NIKPDGIYIDC-TLGFGGHSKAILEQLG--TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHhc-CcCCCCEEEEe-CCCChHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 34444 34566789999 6899999999998874 499999999999999999998855679999999998875433
Q ss_pred --cCCccEEEEcCCcC
Q 041509 109 --FREADFVLIDCNLE 122 (211)
Q Consensus 109 --~~~fD~VfiD~~~~ 122 (211)
.+++|.|+.|-..+
T Consensus 88 ~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 88 LLVTKIDGILVDLGVS 103 (305)
T ss_pred cCCCcccEEEEeccCC
Confidence 25799999997655
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=59.60 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-CCcEEEEE
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-ASHVEFVI 98 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~~~V~~~~ 98 (211)
.+++ ..+...+.+..+|+ |||.|-..+..|... ...+.++||+.+...+.|+...+ +. ..++++..
T Consensus 32 ~~il-~~~~l~~~dvF~Dl-GSG~G~~v~~aal~~--~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 32 SKIL-DELNLTPDDVFYDL-GSGVGNVVFQAALQT--GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHH-HHTT--TT-EEEEE-S-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHH-HHhCCCCCCEEEEC-CCCCCHHHHHHHHHc--CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3444 34456667788999 999999877666543 25679999999999988876443 22 46799999
Q ss_pred cchHHH--hhhccCCccEEEEcCCc--CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 99 GDAQSL--LLSHFREADFVLIDCNL--ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 99 gda~e~--l~~l~~~fD~VfiD~~~--~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
||..+. ...+-..-|+||++... +.....+......|++ |..||.--.+.+.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~-G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKP-GARIISTKPFCPR 163 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-T-T-EEEESS-SS-T
T ss_pred cCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCC-CCEEEECCCcCCC
Confidence 998653 22223567999997542 3445556666777887 6666654444433
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=59.97 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=71.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH----HHHHHHHhcCCCCcEEEEEcchHHHh--hhccCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE----YKLSKKILGLDASHVEFVIGDAQSLL--LSHFRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~----~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~ 111 (211)
..+..+||=+ |.++|.+-.+++.-..+ .|.|++||.+|.. +++|++ ..||--+.+||..-- ..+-+.
T Consensus 71 ik~gskVLYL-GAasGTTVSHvSDIvg~-~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYL-GAASGTTVSHVSDIVGP-DGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp --TT-EEEEE-TTTTSHHHHHHHHHHTT-TSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred CCCCCEEEEe-cccCCCccchhhhccCC-CCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 4557899999 99999998889988864 8999999999954 344443 467888999986432 123569
Q ss_pred ccEEEEcCCcCcHHHHH-HHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVL-RAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l-~~~~~~L~pgG~viv~d 145 (211)
.|+||.|-..++..+.+ ..+...|++||.++++-
T Consensus 144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 99999998877665544 44445799998887754
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.7e-05 Score=57.74 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=55.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-CCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-DASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.++|++| |.++|.|+++++..- ..+|+++|.+|...+..+++++ . .-++..... + .+..-++||...
T Consensus 27 vk~KtV~dI-GA~iGdSaiYF~l~G---AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----e-W~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIV-GADCGSSALYFLLRG---ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----E-WNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEe-cCCccchhhHHhhcC---ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----c-ccccCCCcceEE
Confidence 466899999 999999999998652 5789999999999999999988 2 223222222 1 233468999999
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
+|++
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 9985
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=62.21 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHcc---CCCcEEEEEeCC-------------------
Q 041509 23 AKEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAH---QTGGRVVCILRR------------------- 76 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~---~~~g~v~tiE~~------------------- 76 (211)
++.+..-.-|..+++ ..-|..|+|. |+.-|.|++.++..+. ..+-+++..|.=
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~-GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~ 131 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVEC-GVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEF 131 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE---TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEE-eeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhh
Confidence 344444444444433 2346789999 9999998887655442 224568777631
Q ss_pred -------hhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEE
Q 041509 77 -------VEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 77 -------~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.-..+..++|+. ++ .++++++.|...+.++.. .+++-++.+|++.- -....++.+.+.|.||| ++++
T Consensus 132 ~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GG-iIi~ 210 (248)
T PF05711_consen 132 HEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGG-IIIF 210 (248)
T ss_dssp CGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEE-EEEE
T ss_pred hhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCe-EEEE
Confidence 114566777887 43 578999999999999864 46889999999863 23678889999999855 6666
Q ss_pred ecCCCCC
Q 041509 145 YNAFRKG 151 (211)
Q Consensus 145 dn~~~~~ 151 (211)
|+...+|
T Consensus 211 DDY~~~g 217 (248)
T PF05711_consen 211 DDYGHPG 217 (248)
T ss_dssp SSTTTHH
T ss_pred eCCCChH
Confidence 8865544
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=66.71 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCcCCChhHHHHHHHHHhhC-------CCCeEEEEccccHHHHHHHHHHHccCC------CcEEEEEeCChhHHHHHHHH
Q 041509 20 GQKAKEPNEAEFISALAAGN-------NAQLMVVACANVANATTLALAAAAHQT------GGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~-------~~~~VLEi~Gtg~G~stl~la~a~~~~------~g~v~tiE~~~~~~~~Ar~~ 86 (211)
|+..-++..++++..++... ...+|||. +||+|.+.+.++..++.. .-.++++|+|+..+..|+.+
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP-~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDP-CCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeC-CCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 44455666777777665322 34589999 799999988888776421 24789999999999999999
Q ss_pred hcCC-CCcEEEEEcchHHHh----hhccCCccEEEEcC
Q 041509 87 LGLD-ASHVEFVIGDAQSLL----LSHFREADFVLIDC 119 (211)
Q Consensus 87 ~~~~-~~~V~~~~gda~e~l----~~l~~~fD~VfiD~ 119 (211)
+... ...+.+.++|..... ....+.||+|+.+.
T Consensus 83 l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 83 LGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred HhhcCCCCceeeecccccccccccccccCcccEEEeCC
Confidence 8722 234667777755321 11135899999875
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=59.11 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH-----Hhhhc----cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-----LLLSH----FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e-----~l~~l----~~ 110 (211)
++.++||+ ||+.|-++-++++... ..++|++||+.+. . ....+.++.||..+ .+... .+
T Consensus 23 ~~~~vlDl-G~aPGGws~~~~~~~~-~~~~v~avDl~~~---------~-~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDL-GAAPGGWSQVLLQRGG-PAGRVVAVDLGPM---------D-PLQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEE-T-TTSHHHHHHHTSTT-TEEEEEEEESSST---------G-S-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEc-CCcccceeeeeeeccc-ccceEEEEecccc---------c-cccceeeeecccchhhHHHhhhhhcccccc
Confidence 45789999 8999999999987652 2699999999986 1 01234444444322 22221 26
Q ss_pred CccEEEEcCCc--------Cc------HHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNL--------EN------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~--------~~------y~~~l~~~~~~L~pgG~viv 143 (211)
++|+|+.|... .. ....+..+...|+|||.+++
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 99999999821 11 13445556677899887665
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00025 Score=61.33 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC--CcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA--SHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~--~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+|++|||+ |+|.|..+.++....+ .-.+++++|.++.|.+.++.-++... ...........+..+ ..+.|+
T Consensus 30 p~f~P~~vLD~-GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~DL 105 (274)
T PF09243_consen 30 PDFRPRSVLDF-GSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP--FPPDDL 105 (274)
T ss_pred cCCCCceEEEe-cCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc--CCCCcE
Confidence 35689999999 9999976555555554 46789999999999999998877221 111111101111111 234499
Q ss_pred EEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 115 VLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 115 VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|++..- .....+.++.+-..+. +.+++++.....|
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlVEpGt~~G 145 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTA--PVLVLVEPGTPAG 145 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhcc--CcEEEEcCCChHH
Confidence 987531 1334566666665554 3677777655543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0004 Score=58.04 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=81.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
..++.|| ||--+|.+++|..-- ...++++.|+++..++.|.+++. ++.++|+...||.+..+. .++.+|.+++.
T Consensus 17 ~~~iaDI-GsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADI-GSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-LEDEIDVIVIA 92 (226)
T ss_pred CCceeec-cCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-ccCCcCEEEEe
Confidence 3449999 999999999998764 36899999999999999999998 788999999999987765 36689999999
Q ss_pred CCcCc-HHHHHHHHHhcCCCCcEEEEEec
Q 041509 119 CNLEN-HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 119 ~~~~~-y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+--+. -.+.+++-.+.|+.--.++..-|
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn 121 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPN 121 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCC
Confidence 87663 46788888877752124554333
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=63.35 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHhhC-CCCeEEEEccccHHHHHHHHHHHc----cC--CCcEEEEEeCChhHHHHHHHHhc--------
Q 041509 24 KEPNEAEFISALAAGN-NAQLMVVACANVANATTLALAAAA----HQ--TGGRVVCILRRVEEYKLSKKILG-------- 88 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~----~~--~~g~v~tiE~~~~~~~~Ar~~~~-------- 88 (211)
-+|..=+.|...+... ++-+|+-. ||+||-=+..||..+ +. ..-+|+++|+|+.+++.|++..=
T Consensus 98 Rd~~~f~~L~~~~~~~~~~irIWSA-gCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~ 176 (287)
T PRK10611 98 REAHHFPILAEHARRRSGEYRVWSA-AASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTL 176 (287)
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEEc-cccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcC
Confidence 3444444454433322 33579999 999995443333332 21 13579999999999999987620
Q ss_pred ------------------------CCCCcEEEEEcchHHHhhhccCCccEEEEc-----CCcCcHHHHHHHHHhcCCCCc
Q 041509 89 ------------------------LDASHVEFVIGDAQSLLLSHFREADFVLID-----CNLENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 89 ------------------------~~~~~V~~~~gda~e~l~~l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~pgG 139 (211)
.+...|+|...|..+.-....++||+||.- .+.+...+.++.+.+.|+|||
T Consensus 177 p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 177 SPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred CHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 012457888888765211124789999963 233456789999999999999
Q ss_pred EEEEEe
Q 041509 140 AVVVGY 145 (211)
Q Consensus 140 ~viv~d 145 (211)
.+++.+
T Consensus 257 ~L~lG~ 262 (287)
T PRK10611 257 LLFAGH 262 (287)
T ss_pred EEEEeC
Confidence 888765
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=66.08 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=86.9
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh-ccC
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS-HFR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~-l~~ 110 (211)
+....++..+|||+| +..|-=|.++|.-+. +.|.|++-|.+...+...+.|+. | -++..+.+.|..++-.. ..+
T Consensus 235 ~aL~Pq~gERIlDmc-AAPGGKTt~IAalMk-n~G~I~AnD~n~~r~~~l~~n~~rlG-v~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 235 MALDPQPGERILDMC-AAPGGKTTHIAALMK-NTGVIFANDSNENRLKSLKANLHRLG-VTNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred eecCCCCCCeecchh-cCCCchHHHHHHHHc-CCceEEecccchHHHHHHHHHHHHhC-CCceEEEccCcccccccccCc
Confidence 335667889999997 999999999998775 48999999999999999999998 5 45667778888765322 234
Q ss_pred CccEEEEcCCcC---------------------c----HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 111 EADFVLIDCNLE---------------------N----HEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 111 ~fD~VfiD~~~~---------------------~----y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+||-|++|++=+ . ..+.+..+.+++++||.++-.......
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 899999996311 1 156778888899998877665554443
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0001 Score=60.84 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccC----C---CcEEEEEeCChhHHHHHHHH------------------h-c--C--
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQ----T---GGRVVCILRRVEEYKLSKKI------------------L-G--L-- 89 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~----~---~g~v~tiE~~~~~~~~Ar~~------------------~-~--~-- 89 (211)
++-+|+-. ||++|-=+-.||..+.. . .-+|++.|+|+.+++.|++- + . +
T Consensus 31 ~~lrIWSa-gCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSA-GCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEET-T-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEEC-CCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 45678999 99999654444433322 1 24999999999999998753 2 1 1
Q ss_pred ------CCCcEEEEEcchHHHhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 90 ------DASHVEFVIGDAQSLLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 90 ------~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.++|+|...|..+. ....++||+||.-- +.+...+.++.+...|+|||.+++...
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDP-DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCCC-CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 124689999999882 22368999999642 344557899999999999988887653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00049 Score=57.08 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hh----hhcc-CC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LL----LSHF-RE 111 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l----~~l~-~~ 111 (211)
.+...|+|+ |+..|-.+-.+++.+.. +++|++||+.|- +. -..|.++.+|+.+ .+ ..+. .+
T Consensus 44 ~~~~~ViDL-GAAPGgWsQva~~~~~~-~~~ivavDi~p~---------~~-~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDL-GAAPGGWSQVAAKKLGA-GGKIVAVDILPM---------KP-IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEc-CCCCCcHHHHHHHHhCC-CCcEEEEECccc---------cc-CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 457889999 89999999999988864 678999999872 21 2348999998643 22 2223 35
Q ss_pred ccEEEEcCCc--------CcH------HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNL--------ENH------EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~--------~~y------~~~l~~~~~~L~pgG~viv 143 (211)
+|+|..|... .++ ...++.+...|+|+|.+++
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7999999765 122 4456666778999887776
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00059 Score=65.69 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=69.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHcc-----CC-----CcEEEEEeCChhH--------------HHHHHHHhc-------C
Q 041509 41 AQLMVVACANVANATTLALAAAAH-----QT-----GGRVVCILRRVEE--------------YKLSKKILG-------L 89 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~-----~~-----~g~v~tiE~~~~~--------------~~~Ar~~~~-------~ 89 (211)
.=+|+|+ |=|+|+..+.+..... .+ .-+++++|..|-. .+.+++..+ +
T Consensus 58 ~~~i~e~-gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 58 RFVIAET-GFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred cEEEEec-CcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3569999 8999998888776551 11 2378999986521 222222221 1
Q ss_pred C------CC--cEEEEEcchHHHhhhccCCccEEEEcCCc--C----cHHHHHHHHHhcCCCCcEEE
Q 041509 90 D------AS--HVEFVIGDAQSLLLSHFREADFVLIDCNL--E----NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 90 ~------~~--~V~~~~gda~e~l~~l~~~fD~VfiD~~~--~----~y~~~l~~~~~~L~pgG~vi 142 (211)
. .+ +++++.||+.+.++++...+|.+|+|+-. . .-.++++.+.++++|||.++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 12 46688999999999877789999999622 2 23789999999999977655
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00035 Score=57.93 Aligned_cols=104 Identities=11% Similarity=-0.032 Sum_probs=70.6
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC---CCcEEEEEcchHHHhh----hccCCcc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD---ASHVEFVIGDAQSLLL----SHFREAD 113 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~---~~~V~~~~gda~e~l~----~l~~~fD 113 (211)
+|||| |+|||--+.++|..++ .-+-..-|.++....-.+.++. ++ ...+.+=..+...-.. ...++||
T Consensus 28 ~vLEi-aSGtGqHa~~FA~~lP--~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEI-ASGTGQHAVYFAQALP--HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEE-cCCccHHHHHHHHHCC--CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 59999 9999999999999996 4778899999988666665554 32 2223332222211111 0146899
Q ss_pred EEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 114 FVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 114 ~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.||.-- ..+..+..++.+.++|++||.++ .+..+..
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~-~YGPF~~ 145 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF-LYGPFNR 145 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE-EeCCccc
Confidence 999642 23356789999999999977655 4777753
|
The function of this family is unknown. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00017 Score=59.39 Aligned_cols=100 Identities=14% Similarity=0.036 Sum_probs=70.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++++|||+ |+|+|..++..+.+. ...|++.|++|.....++-|.+.+.-.|.+...|..- . +..||+++.
T Consensus 77 tVrgkrVLd~-gagsgLvaIAaa~aG---A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g--~--~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDL-GAGSGLVAIAAARAG---AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG--S--PPAFDLLLA 148 (218)
T ss_pred ccccceeeec-ccccChHHHHHHHhh---hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC--C--CcceeEEEe
Confidence 3567899999 899999888887764 5689999999999998888888444668888888764 2 578999987
Q ss_pred cC---CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DC---NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~---~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.- ++......+....++...|-.|+|.|
T Consensus 149 gDlfy~~~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 149 GDLFYNHTEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred eceecCchHHHHHHHHHHHHHhCCCEEEEeC
Confidence 42 44433334443333223344455544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00033 Score=60.95 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhc-
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSH- 108 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l- 108 (211)
+.+..+|++||-| |.|-|-.--.-+.. +.-+.+.-+|+|...++..++++. ++ ..+|.++.||...++...
T Consensus 116 l~s~~npkkvlVV-gggDggvlrevikH--~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~ 192 (337)
T KOG1562|consen 116 LCSHPNPKKVLVV-GGGDGGVLREVIKH--KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK 192 (337)
T ss_pred cccCCCCCeEEEE-ecCCccceeeeecc--ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc
Confidence 3566789999999 77666432222222 234789999999999999999987 44 568999999999999877
Q ss_pred cCCccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
.++||.|.+|.... .| +.+++.+.+.|+++|.++.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 78999999997543 23 6689999999998776544
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0066 Score=53.71 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=77.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc-CCCCcEEE--EEcchHHHhhhc-----c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG-LDASHVEF--VIGDAQSLLLSH-----F 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~--~~gda~e~l~~l-----~ 109 (211)
++..++|+ |||.|.=|-.|..++.+. ..+.+.||++.++++.+.+++. ..-..+++ ++||..+.+..+ .
T Consensus 76 ~~~~lIEL-GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVEL-GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 34479999 999999999888888532 3578999999999999999988 43344555 999988765432 1
Q ss_pred CCccEEE-EcCCcC-----cHHHHHHHHHh-cCCCCcEEEEEecCC
Q 041509 110 READFVL-IDCNLE-----NHEGVLRAVQA-GNKPNGAVVVGYNAF 148 (211)
Q Consensus 110 ~~fD~Vf-iD~~~~-----~y~~~l~~~~~-~L~pgG~viv~dn~~ 148 (211)
....++| +..... +-...++.+.+ .|.|||.+++.=+..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 2345554 443333 33567888888 899999988865433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=47.78 Aligned_cols=100 Identities=23% Similarity=0.165 Sum_probs=67.7
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCc--EEEEEcchHH-Hhhhcc-CCccEEEEcC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASH--VEFVIGDAQS-LLLSHF-READFVLIDC 119 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~--V~~~~gda~e-~l~~l~-~~fD~VfiD~ 119 (211)
++|+ |||+|..+ .++..... ...++++|.++.++..++..... ... +.+..+|... .++... ..||++....
T Consensus 52 ~ld~-~~g~g~~~-~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDI-GCGTGRLA-LLARLGGR-GAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEe-cCCcCHHH-HHHHhCCC-CceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 9999 99999977 44433221 24889999999999886555432 222 7889999876 244223 3799993332
Q ss_pred CcC--cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 120 NLE--NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 120 ~~~--~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
... .....+..+.+.++|+|.+++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 211 1367888899999998887776544
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00068 Score=60.11 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=79.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc---
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID--- 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD--- 118 (211)
+..+|+ |.|+|-.+-.+.... -+|-.|+.+...+..++.++. ..|+.+.||...-.|. -|+||+-
T Consensus 179 ~~avDv-GgGiG~v~k~ll~~f----p~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~~P~----~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDV-GGGIGRVLKNLLSKY----PHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQDTPK----GDAIWMKWIL 246 (342)
T ss_pred ceEEEc-CCcHhHHHHHHHHhC----CCCceeecCHHHHHhhhhhhc---CCcceecccccccCCC----cCeEEEEeec
Confidence 678999 999999988888743 259999999999988888874 1288999998765553 4699874
Q ss_pred --CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 119 --CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 119 --~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
-.-++-.++++.|...|.|||.|++.||+.+..
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e 281 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEE 281 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Confidence 344567899999999999999999999988763
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00024 Score=60.12 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCC--CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC------CCcEEEE
Q 041509 30 EFISALAAGNNA--QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD------ASHVEFV 97 (211)
Q Consensus 30 ~lL~~l~~~~~~--~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~------~~~V~~~ 97 (211)
+.|...+...+. .+|||. -+|.|-=++-+|. + +++|+++|.+|-.+.+.+.-++ .. ..+|+++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDa-TaGLG~Da~vlA~-~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDA-TAGLGRDAFVLAS-L---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHHHHTT-BTTB---EEET-T-TTSHHHHHHHH-H---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHHHHhCCCCCCCCEEEEC-CCcchHHHHHHHc-c---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 445555544443 379999 6999999888885 3 6799999999999888776654 21 1489999
Q ss_pred EcchHHHhhhccCCccEEEEcCC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
++|+.++|....++||+|++|..
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE--S
T ss_pred cCCHHHHHhhcCCCCCEEEECCC
Confidence 99999998844789999999974
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00078 Score=58.15 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=73.1
Q ss_pred CCeEEEEccccHH---HH-HHHHHHHccC---CCcEEEEEeCChhHHHHHHHHh-------------------c-C----
Q 041509 41 AQLMVVACANVAN---AT-TLALAAAAHQ---TGGRVVCILRRVEEYKLSKKIL-------------------G-L---- 89 (211)
Q Consensus 41 ~~~VLEi~Gtg~G---~s-tl~la~a~~~---~~g~v~tiE~~~~~~~~Ar~~~-------------------~-~---- 89 (211)
+-+|+-+ ||+|| || |+.|.+..+. ..-+|++.|+|...++.|+.-. . .
T Consensus 97 ~irIWSa-aCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 97 PIRIWSA-ACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred ceEEEec-CcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 6689999 99999 33 4445555532 2468999999999999987321 1 0
Q ss_pred ------CCCcEEEEEcchHHHhhhccCCccEEEEc-----CCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 90 ------DASHVEFVIGDAQSLLLSHFREADFVLID-----CNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 90 ------~~~~V~~~~gda~e~l~~l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+...|+|...|..+--+ ..+.||+||+= .+.+...+.++.....|+|||.+++.++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 11246666666654432 35789999963 3555667889999999999998888764
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=57.83 Aligned_cols=118 Identities=14% Similarity=-0.040 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC--C----------------------------Cc-----
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ--T----------------------------GG----- 68 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~--~----------------------------~g----- 68 (211)
+-+..+.-|-.++.-.+.+.++|- =||+|...+..|.-.+. + .+
T Consensus 175 LketLAaAil~lagw~~~~pl~DP-mCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDP-MCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccC-CCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 334445555555554455579999 48899888877765431 0 01
Q ss_pred --EEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-----------cHHHHHHHHHh
Q 041509 69 --RVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-----------NHEGVLRAVQA 133 (211)
Q Consensus 69 --~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~ 133 (211)
.++++|+|+.+++.|+.|.. |+.+.|+|..+|+..+-+. .+.+|+|+.+.+-+ .|.++.+.+++
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 47899999999999999998 8899999999999987543 27899999986421 46666777777
Q ss_pred cCCCCcEEEE
Q 041509 134 GNKPNGAVVV 143 (211)
Q Consensus 134 ~L~pgG~viv 143 (211)
.+.-.+..++
T Consensus 333 ~~~~ws~~v~ 342 (381)
T COG0116 333 LLAGWSRYVF 342 (381)
T ss_pred HhcCCceEEE
Confidence 7764344444
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00058 Score=60.68 Aligned_cols=99 Identities=18% Similarity=0.040 Sum_probs=65.3
Q ss_pred CCCeEEEEccccHH-HHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------C--CCCcEEEEEcchHHH-hh
Q 041509 40 NAQLMVVACANVAN-ATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------L--DASHVEFVIGDAQSL-LL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G-~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~--~~~~V~~~~gda~e~-l~ 106 (211)
+..+|||+ |||-| ..--|... .-++++++|++++.++.|++..+ . ..-..+|+.+|+... +.
T Consensus 62 ~~~~VLDl-~CGkGGDL~Kw~~~----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDL-CCGKGGDLQKWQKA----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEE-T-TTTTTHHHHHHT----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEe-cCCCchhHHHHHhc----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 56889999 79955 45555542 25899999999999999999982 1 123578899997532 22
Q ss_pred h-c---cCCccEEEEcCCcC-------cHHHHHHHHHhcCCCCcEEEE
Q 041509 107 S-H---FREADFVLIDCNLE-------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~-l---~~~fD~VfiD~~~~-------~y~~~l~~~~~~L~pgG~viv 143 (211)
. + ..+||+|-+=.... .-...++.+-..|+|||.+|.
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1 25999997654321 225588888999999887654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00079 Score=60.86 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=74.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC-cEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS-HVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~-~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
+-++||. =+|+|.=++..+..++. ..+|+.-|+||++.+..++|++ ++.+ ++++.+.||...+......||+|=+
T Consensus 50 ~~~~lDa-laasGvR~iRy~~E~~~-~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDA-LAASGVRGIRYAKELAG-VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEET-T-TTSHHHHHHHHH-SS-ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEec-cccccHHHHHHHHHcCC-CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 3479999 48999999999888643 5799999999999999999998 5555 7999999999988544789999999
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+--. -..+++.+.+.++.||.+.|.
T Consensus 128 DPfGS-p~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 128 DPFGS-PAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp --SS---HHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCC-ccHhHHHHHHHhhcCCEEEEe
Confidence 97533 456888888888876665553
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0019 Score=55.34 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=64.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..++||| |.|-|-.|..++... .+|++.|.++.|...-++ +| .+++ +..+. ...+.+||+|-.=
T Consensus 93 ~~~~~lLDl-GAGdG~VT~~l~~~f----~~v~aTE~S~~Mr~rL~~--kg----~~vl--~~~~w-~~~~~~fDvIscL 158 (265)
T PF05219_consen 93 WKDKSLLDL-GAGDGEVTERLAPLF----KEVYATEASPPMRWRLSK--KG----FTVL--DIDDW-QQTDFKFDVISCL 158 (265)
T ss_pred ccCCceEEe-cCCCcHHHHHHHhhc----ceEEeecCCHHHHHHHHh--CC----CeEE--ehhhh-hccCCceEEEeeh
Confidence 366789999 999999999998765 579999999998654433 23 2222 23332 2225689999642
Q ss_pred C--Cc-CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 C--NL-ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~--~~-~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
- ++ ......++.+.+.|+|+|.++++-
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 1 11 134678899999999999887753
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0021 Score=57.26 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=67.4
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...+.++|+-+ |. |.|..++-+|.++ +.+|+++|.+++..+.|++.-+ -.++.+.-.+.++.+.+.||+
T Consensus 162 ~~~~pG~~V~I~-G~GGlGh~avQ~Aka~---ga~Via~~~~~~K~e~a~~lGA-----d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVV-GAGGLGHMAVQYAKAM---GAEVIAITRSEEKLELAKKLGA-----DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHc---CCeEEEEeCChHHHHHHHHhCC-----cEEEEcCCchhhHHhHhhCcE
Confidence 445667888777 43 6778888899887 5899999999999999987522 223332222233333345999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|+.-.. . ..++...+.|+++|.++++-+.
T Consensus 233 ii~tv~-~---~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-P---ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-h---hhHHHHHHHHhcCCEEEEECCC
Confidence 987766 3 3344555566679999887765
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=57.41 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=80.2
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+.+|+|.. +|+|.=++.+|...+. -+|+.=|++|++.+.+++|++ +.......++.||...+.++...||+|=+|.
T Consensus 53 ~~~v~Dal-satGiRgIRya~E~~~--~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDAL-SATGIRGIRYAVETGV--VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecc-cccchhHhhhhhhcCc--cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC
Confidence 88999994 9999999999887643 389999999999999999999 5456788888999999987678999998886
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
--. -..+++.+.+.++.+|.+-+
T Consensus 130 FGS-PaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 130 FGS-PAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCC-CchHHHHHHHHhhcCCEEEE
Confidence 322 34677777777777776544
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00057 Score=53.45 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred EEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccC-CccEEEEc------CCcC------cHHHHHHHHHh
Q 041509 69 RVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFR-EADFVLID------CNLE------NHEGVLRAVQA 133 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~-~fD~VfiD------~~~~------~y~~~l~~~~~ 133 (211)
+|+++|+.+++++..++.++ +..++|++++..=..+...+.. ++|+++.+ +++. .-...++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 69999999999999999998 6677999999887665543444 89999876 2332 23678888999
Q ss_pred cCCCCcEEEEE
Q 041509 134 GNKPNGAVVVG 144 (211)
Q Consensus 134 ~L~pgG~viv~ 144 (211)
+|+|||.++++
T Consensus 81 lL~~gG~i~iv 91 (140)
T PF06962_consen 81 LLKPGGIITIV 91 (140)
T ss_dssp HEEEEEEEEEE
T ss_pred hhccCCEEEEE
Confidence 99998877664
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=57.61 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-- 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-- 108 (211)
.+..| ...+...+||. --|.|--|..+.+.++ +++|+++|.||++++.|++++....+++.+++++..++...+
T Consensus 12 vl~~L-~~~~~g~~vD~-T~G~GGHS~aiL~~~~--~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 12 VLEAL-NPKPGGIYVDC-TFGGGGHSKAILEKLP--NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHH-T--TT-EEEET-T-TTSHHHHHHHHT-T--T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHhh-CcCCCceEEee-cCCcHHHHHHHHHhCC--CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 34444 35566788999 5777777788888775 499999999999999999999866889999999987654322
Q ss_pred ---cCCccEEEEcCCcC
Q 041509 109 ---FREADFVLIDCNLE 122 (211)
Q Consensus 109 ---~~~fD~VfiD~~~~ 122 (211)
...+|.|++|...+
T Consensus 88 ~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 88 LNGINKVDGILFDLGVS 104 (310)
T ss_dssp TTTTS-EEEEEEE-S--
T ss_pred ccCCCccCEEEEccccC
Confidence 24899999997665
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0029 Score=52.10 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
..|.--..++.+.-..+|+.|+|+ |+--|-|++|.|.-+-..+ -+|.++|+|-.-++-+... ..+|.|+.|+.
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~-Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss 127 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEF-GSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSS 127 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEee-ccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCC
Confidence 445555567777777899999999 9999999999987665433 5899999886554433221 46799999986
Q ss_pred HHH-----hhhccC--CccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSL-----LLSHFR--EADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~-----l~~l~~--~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+. +..+.+ +-=||++|+++. .....++...++|..|--++|.|...
T Consensus 128 ~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 128 TDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 542 222222 345667788876 45667777888888766666666444
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.007 Score=53.93 Aligned_cols=99 Identities=26% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhc-c-CCccE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSH-F-READF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l-~-~~fD~ 114 (211)
.++.+|+-+ |+| .|..++.+++.+. ..+|+.+|.+++.++.|++... .+.+..... +..+....+ . ..+|+
T Consensus 167 ~~~~~V~V~-GaGpIGLla~~~a~~~G--a~~Viv~d~~~~Rl~~A~~~~g--~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVV-GAGPIGLLAIALAKLLG--ASVVIVVDRSPERLELAKEAGG--ADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHhCC--CeEeecCccccHHHHHHHHhCCCCCCE
Confidence 344579999 877 5888888888764 5899999999999999998654 111111112 333333223 2 37999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|-... ....++.+.+.++|+|.+++.-
T Consensus 242 vie~~G---~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVG---SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCC---CHHHHHHHHHHhcCCCEEEEEe
Confidence 997666 4457888888999999887743
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0039 Score=55.59 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.+.+||+ |+++|-.|-.|++. +++|++||..+- +.. +. ...+|+.+.+|.....+. .+++|.++.|
T Consensus 210 ~~g~~vlDL-GAsPGGWT~~L~~r----G~~V~AVD~g~l----~~~-L~-~~~~V~h~~~d~fr~~p~-~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDL-GAAPGGWTYQLVRR----GMFVTAVDNGPM----AQS-LM-DTGQVEHLRADGFKFRPP-RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEe-CCCCcHHHHHHHHc----CCEEEEEechhc----CHh-hh-CCCCEEEEeccCcccCCC-CCCCCEEEEe
Confidence 467889999 99999999988864 679999996552 111 11 246899999999887764 6789999999
Q ss_pred CCcCcHHHHHHHHHhcCCC
Q 041509 119 CNLENHEGVLRAVQAGNKP 137 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~p 137 (211)
..-. ..+..+.+.+.|..
T Consensus 278 mve~-P~rva~lm~~Wl~~ 295 (357)
T PRK11760 278 MVEK-PARVAELMAQWLVN 295 (357)
T ss_pred cccC-HHHHHHHHHHHHhc
Confidence 7532 33455555555543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0048 Score=51.17 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=75.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--hhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--LSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~fD~ 114 (211)
...+..+||=+ |..+|.+..+.+--++ .|.+++||.+|.....--...+ ...||--+.+||..-- ..+-+..|+
T Consensus 73 pi~~g~~VLYL-GAasGTTvSHVSDIv~--~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 73 PIKEGSKVLYL-GAASGTTVSHVSDIVG--EGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CcCCCCEEEEe-eccCCCcHhHHHhccC--CCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhhhhcccccE
Confidence 34568899999 9999999889998874 6999999999986543322222 2467888899985422 223578999
Q ss_pred EEEcCCcCcHHHHHH-HHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLR-AVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~-~~~~~L~pgG~viv~d 145 (211)
||.|-..++..+.+. .+...|+++|.++++-
T Consensus 149 iy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 149 IYQDVAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEecCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 999988887766544 3455688888766543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0089 Score=55.85 Aligned_cols=131 Identities=18% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc--CCCCcEE
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG--LDASHVE 95 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~ 95 (211)
++..-++.+.+++..++...+.++|.|-| ||+|-+-+..+..+... ...+++.|+++....+|+.|+- +....+.
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~Dpa-cGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPA-CGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCC-CchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 33456777889999998876677899996 99998766666666432 3779999999999999999987 4333567
Q ss_pred EEEcchHHHhhh----ccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCc--EE
Q 041509 96 FVIGDAQSLLLS----HFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNG--AV 141 (211)
Q Consensus 96 ~~~gda~e~l~~----l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG--~v 141 (211)
..++|...-... ..++||+|+...+. ..+..+++.+...|+|+| ++
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 778877654322 23679988764211 123678888999999865 35
Q ss_pred EEEecCCCCC
Q 041509 142 VVGYNAFRKG 151 (211)
Q Consensus 142 iv~dn~~~~~ 151 (211)
++.++++.++
T Consensus 325 vl~~gvlfr~ 334 (489)
T COG0286 325 VLPDGVLFRG 334 (489)
T ss_pred EecCCcCcCC
Confidence 6667788775
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0072 Score=52.87 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=66.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc----cCCc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH----FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l----~~~f 112 (211)
...+....+|. -=|.|--+-.+.+.++. .|+++++|.||++++.|++.+..+.+++.+++++..++...+ .+.+
T Consensus 20 ~~~~~giyiD~-TlG~GGHS~~iL~~l~~-~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 20 APKPDGIYIDG-TLGAGGHSRAILEKLPD-LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred ccCCCcEEEEe-cCCCcHhHHHHHHhCCC-CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCce
Confidence 44566778998 45666666777777764 799999999999999999999866789999999987765433 3589
Q ss_pred cEEEEcCCcCc
Q 041509 113 DFVLIDCNLEN 123 (211)
Q Consensus 113 D~VfiD~~~~~ 123 (211)
|-|++|-..+-
T Consensus 98 DGiL~DLGVSS 108 (314)
T COG0275 98 DGILLDLGVSS 108 (314)
T ss_pred eEEEEeccCCc
Confidence 99999976653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=56.24 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CC----CCcEEEEEcchHH-Hhhhc--
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LD----ASHVEFVIGDAQS-LLLSH-- 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~----~~~V~~~~gda~e-~l~~l-- 108 (211)
.+.+.++++ |||-|--.+-.-.|. -+.++++|+.+..++.|++..+ +. .-.+.|+.||... .|..+
T Consensus 116 ~~~~~~~~L-gCGKGGDLlKw~kAg---I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 116 KRGDDVLDL-GCGKGGDLLKWDKAG---IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred cccccccee-ccCCcccHhHhhhhc---ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 467789999 999886555444332 4799999999999999998886 22 2358999999743 22222
Q ss_pred -cCC-ccEEEEcCCc----C---cHHHHHHHHHhcCCCCcEEE
Q 041509 109 -FRE-ADFVLIDCNL----E---NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 109 -~~~-fD~VfiD~~~----~---~y~~~l~~~~~~L~pgG~vi 142 (211)
..+ ||+|-.-... + .-.-.+..+...|+|||.+|
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 344 9998543211 1 22446777788899977554
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0051 Score=51.27 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=63.8
Q ss_pred HHHHHHHhh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh
Q 041509 10 TKAYLKTLK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL 87 (211)
Q Consensus 10 ~~ay~~~~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~ 87 (211)
...|-...+ ..+....|. -.++..+-...+...|-|+ |||-+-. |.+++. .-+|.+.|.-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nPv-d~iI~~l~~~~~~~viaD~-GCGdA~l----a~~~~~-~~~V~SfDLva~--------- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNPV-DVIIEWLKKRPKSLVIADF-GCGDAKL----AKAVPN-KHKVHSFDLVAP--------- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-HH-HHHHHHHCTS-TTS-EEEE-S-TT-HH----HHH--S----EEEEESS-S---------
T ss_pred HHHHHHHHHHHHhcCCCCcH-HHHHHHHHhcCCCEEEEEC-CCchHHH----HHhccc-CceEEEeeccCC---------
Confidence 355665433 233344443 3344444443334578999 9999874 455542 457999998531
Q ss_pred cCCCCcEEEEEcchHHHhhhccCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 88 GLDASHVEFVIGDAQSLLLSHFREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 88 ~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+. ++..|...+ |-.++..|+++..-. ..+|.++++++.|.|+|||.+.|++
T Consensus 105 ---n~~--Vtacdia~v-PL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 105 ---NPR--VTACDIANV-PLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp ---STT--EEES-TTS--S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCC--EEEecCccC-cCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 123 445666444 422689999987643 4589999999999999999999977
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0061 Score=54.57 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=80.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhh-------
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLL------- 106 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~------- 106 (211)
...+..+|||+| ...|..|+.|.+++... .|.|++=|.++..+..-+..+. -...++.+...|+...-.
T Consensus 152 ~v~p~~~VLDmC-AAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMC-AAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeec-cCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 456788899997 99999999999988632 5799999999998887776665 224445555555433211
Q ss_pred -hccCCccEEEEcCCc--------------C------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 107 -SHFREADFVLIDCNL--------------E------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 107 -~l~~~fD~VfiD~~~--------------~------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.-...||-|++|.+= + -..+++....++|++||.++-....+++-
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 013589999999410 0 11456777788899999998877777653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=60.87 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=78.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc------cCCccE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH------FREADF 114 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l------~~~fD~ 114 (211)
..+|-+ |-|.|....++-..++ ..++++||++|++++.|+.++. .-..+..++..|+.+.+.+. +..||+
T Consensus 297 ~~~lvv-g~ggG~l~sfl~~~~p--~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 297 GKQLVV-GLGGGGLPSFLHMSLP--KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred CcEEEE-ecCCCccccceeeecC--ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345666 6666887777776664 5899999999999999999998 33457888899999887654 348999
Q ss_pred EEEcCCcC----------cH--HHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 115 VLIDCNLE----------NH--EGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 115 VfiD~~~~----------~y--~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+++|-+-. .+ ...+..++..|.|.|.+++ |...+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i--nlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII--NLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE--EEecC
Confidence 99985322 12 5577777888999997766 65544
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=50.15 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhh-ccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLS-HFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~-l~~~fD~V 115 (211)
..+.+.+||| |++||-+|-++.+.- ..+|++||.--..+.. .++ ...+|..+.. |+..+-+. +.+..|++
T Consensus 77 ~~k~kv~LDi-GsSTGGFTd~lLq~g---Ak~VyavDVG~~Ql~~---kLR-~d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 77 DVKGKVVLDI-GSSTGGFTDVLLQRG---AKHVYAVDVGYGQLHW---KLR-NDPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCCCEEEEe-cCCCccHHHHHHHcC---CcEEEEEEccCCccCH---hHh-cCCcEEEEecCChhhCCHHHcccCCCeE
Confidence 3567889999 999999999998752 5799999987543321 122 2455555544 34333222 24588999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++|-..--....+..+..++.|++-++.
T Consensus 149 v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 149 VIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred EEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 9998877777888888888888665443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0011 Score=61.33 Aligned_cols=100 Identities=12% Similarity=-0.047 Sum_probs=55.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..-+.+||+ |||+|.++.+|.+. +-.+.++-.+.......+-.++ |....+-++ +..-||...+.||+|-.
T Consensus 116 g~iR~~LDv-GcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 116 GGIRTALDV-GCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVL---GSQRLPFPSNAFDMVHC 187 (506)
T ss_pred CceEEEEec-cceeehhHHHHhhC----CceEEEcccccCCchhhhhhhhcCcchhhhhh---ccccccCCccchhhhhc
Confidence 344568999 99999999988753 3344444443332222221122 322211111 23345544789999954
Q ss_pred c----CCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 D----CNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D----~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. .+..+-.-++-++-++|||||.++...-
T Consensus 188 src~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 188 SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccccccchhcccceeehhhhhhccCceEEecCC
Confidence 3 2222223467778889999887766443
|
; GO: 0008168 methyltransferase activity |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0041 Score=46.64 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CCccEEEEcCCcCcHHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-READFVLIDCNLENHEGVL 128 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~fD~VfiD~~~~~y~~~l 128 (211)
|+|..++.+|++. +.+|++++.+++..+.+++.-. ..-+.....|..+.+..+ . ..+|.||-.... ...+
T Consensus 1 ~vG~~a~q~ak~~---G~~vi~~~~~~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---~~~~ 72 (130)
T PF00107_consen 1 GVGLMAIQLAKAM---GAKVIATDRSEEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---GDTL 72 (130)
T ss_dssp HHHHHHHHHHHHT---TSEEEEEESSHHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---HHHH
T ss_pred ChHHHHHHHHHHc---CCEEEEEECCHHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCc---HHHH
Confidence 5789999999886 5899999999999999987422 111111222344444444 2 379999866553 3678
Q ss_pred HHHHhcCCCCcEEEEEe
Q 041509 129 RAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 129 ~~~~~~L~pgG~viv~d 145 (211)
+.....|+|+|.++++-
T Consensus 73 ~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHHEEEEEEEEEES
T ss_pred HHHHHHhccCCEEEEEE
Confidence 88888899988877754
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0062 Score=55.83 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=49.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL 104 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~ 104 (211)
.|||| |||||..++..+++. +-.||++|.=..|.+.|++-.. |.+++|+++.-...|+
T Consensus 69 ~vLdi-gtGTGLLSmMAvrag---aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDI-GTGTGLLSMMAVRAG---ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEc-cCCccHHHHHHHHhc---CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 47999 999999888777765 4579999999999999999987 7789999998877665
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=50.84 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=64.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCC-
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCN- 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~- 120 (211)
+++|+| ||+|-.++.+..+- ...+.++|+++.+.+..+.|+... ++++|..++.... ...+|+++.+.+
T Consensus 2 ~v~dLF-sG~Gg~~~gl~~~G---~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLF-AGIGGFRLGLEKAG---FEIVAANEIDKSAAETYEANFPNK-----LIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEc-cCcchHHHHHHHcC---CEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCchhhcCCCCCEEEeCCCC
Confidence 589994 89998877776542 346899999999999999997631 5677777765432 467999998741
Q ss_pred ---------c-----C--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 ---------L-----E--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ---------~-----~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+ + .+.++++.+.. ++| - +++.+|+-
T Consensus 73 q~fS~ag~~~~~~d~r~~L~~~~~~~i~~-~~P-~-~~v~ENV~ 113 (275)
T cd00315 73 QPFSIAGKRKGFEDTRGTLFFEIIRILKE-KKP-K-YFLLENVK 113 (275)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHHh-cCC-C-EEEEEcCc
Confidence 1 1 13455554443 577 3 56669975
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0075 Score=51.14 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=70.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC--
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC-- 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-- 119 (211)
..+++| ||+.|+..-.|... .-++++-+|.+-.|++.++..-.+ .-.+...++|-. .|+.-++++|+|+..-
T Consensus 74 p~a~di-Gcs~G~v~rhl~~e---~vekli~~DtS~~M~~s~~~~qdp-~i~~~~~v~DEE-~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 74 PTAFDI-GCSLGAVKRHLRGE---GVEKLIMMDTSYDMIKSCRDAQDP-SIETSYFVGDEE-FLDFKENSVDLIISSLSL 147 (325)
T ss_pred cceeec-ccchhhhhHHHHhc---chhheeeeecchHHHHHhhccCCC-ceEEEEEecchh-cccccccchhhhhhhhhh
Confidence 468999 99999987776532 257899999999999888764331 223556677743 4454478999998653
Q ss_pred -CcCcHHHHHHHHHhcCCCCcEEE
Q 041509 120 -NLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 120 -~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
+..+.+.+...|...|+|.|.++
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccch
Confidence 44567889999999999977554
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0012 Score=57.56 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCeEEEEccccHHHHHH-HHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTL-ALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl-~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
...|+|+ ..|+||+|+ ++..+ ....|+++|.||..++.-|++++ +..++-.++.||-...-+ ....|.|-+
T Consensus 195 ~eviVDL-YAGIGYFTlpflV~a---gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDL-YAGIGYFTLPFLVTA---GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNL 268 (351)
T ss_pred cchhhhh-hcccceEEeehhhcc---CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheee
Confidence 3789999 899999999 67655 25799999999999999999998 445666777777765433 568899888
Q ss_pred cCCcCcHHHHHHHHHhcCCC-Cc-EEEEEecCCC
Q 041509 118 DCNLENHEGVLRAVQAGNKP-NG-AVVVGYNAFR 149 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~p-gG-~viv~dn~~~ 149 (211)
.--.+--..|...+ +.|+| || .+=|..|+-.
T Consensus 269 GLlPSse~~W~~A~-k~Lk~eggsilHIHenV~~ 301 (351)
T KOG1227|consen 269 GLLPSSEQGWPTAI-KALKPEGGSILHIHENVKD 301 (351)
T ss_pred ccccccccchHHHH-HHhhhcCCcEEEEeccccc
Confidence 75433222333322 23444 44 3444445544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0095 Score=52.23 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=59.3
Q ss_pred cCChhHHHHHHHHHhhc-----------CCcCCChhHHH-----HHHHHHhhCC-----CCeEEEEccccHHHHHHH--H
Q 041509 3 CWSAENATKAYLKTLKM-----------GQKAKEPNEAE-----FISALAAGNN-----AQLMVVACANVANATTLA--L 59 (211)
Q Consensus 3 ~~~~~~~~~ay~~~~~~-----------~~~~~~~~~~~-----lL~~l~~~~~-----~~~VLEi~Gtg~G~stl~--l 59 (211)
.|++..+..++-.++-. ..+.++|--++ +|.-+....+ .-++||| |||.- .++ |
T Consensus 44 dF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDI-GTGAs--cIYpLL 120 (299)
T PF05971_consen 44 DFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDI-GTGAS--CIYPLL 120 (299)
T ss_dssp -TTSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEE-S-TTT--THHHHH
T ss_pred ecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecC-CccHH--HHHHHH
Confidence 46666666666555322 11234444343 2444444333 2368999 87654 454 3
Q ss_pred HHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEcchH-HHhhhc---cCCccEEEEcCCc
Q 041509 60 AAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFVIGDAQ-SLLLSH---FREADFVLIDCNL 121 (211)
Q Consensus 60 a~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~gda~-e~l~~l---~~~fD~VfiD~~~ 121 (211)
+... .+=++++.|+|+..++.|++|++ .+.++|+++..+.. .++..+ .+.|||.....+.
T Consensus 121 g~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 121 GAKL--YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp HHHH--H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred hhhh--cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCcc
Confidence 3333 26799999999999999999998 46889999876433 232222 4689999976543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=49.15 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=91.1
Q ss_pred CCChhH---HHHHHHHHhhCCCC-eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--------CC
Q 041509 23 AKEPNE---AEFISALAAGNNAQ-LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--------LD 90 (211)
Q Consensus 23 ~~~~~~---~~lL~~l~~~~~~~-~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--------~~ 90 (211)
-++|+. .++.-...+..+.+ .+.|| |||.|-..+.|+...| +.-+.+.|+..+..+-.++.+. +.
T Consensus 39 PvsP~~mDWS~~yp~f~~~~~~kvefaDI-GCGyGGLlv~Lsp~fP--dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~ 115 (249)
T KOG3115|consen 39 PVSPQEMDWSKYYPDFRRALNKKVEFADI-GCGYGGLLMKLAPKFP--DTLILGMEIRDKVSDYVKERIQALRRTSAEGQ 115 (249)
T ss_pred CCChHhCcHHHhhhhhhhhccccceEEee-ccCccchhhhccccCc--cceeeeehhhHHHHHHHHHHHHHHhccccccc
Confidence 355553 34443343333322 37999 9999999999988775 6889999999888887777664 33
Q ss_pred CCcEEEEEcchHHHhhhcc--CCc--cEEEE-cCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCCCCCcee---
Q 041509 91 ASHVEFVIGDAQSLLLSHF--REA--DFVLI-DCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAFRKGSWR--- 154 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l~--~~f--D~Vfi-D~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~~--- 154 (211)
..++.+...++...++++. +.. ||.+. |.... .-..++.+..=+|++||.++...++..-..|.
T Consensus 116 ~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~ 195 (249)
T KOG3115|consen 116 YPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKH 195 (249)
T ss_pred cccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHH
Confidence 5679999999999998762 233 33332 22110 11345555555688899888766644322332
Q ss_pred ---cCCCcEEEeecCCcEEE
Q 041509 155 ---SSGSKSQLLPIGEGLLV 171 (211)
Q Consensus 155 ---~~~~~~v~lpig~Gl~v 171 (211)
+|-|+....+.-++..+
T Consensus 196 ~e~hplfe~lt~ee~~~d~~ 215 (249)
T KOG3115|consen 196 LEEHPLFERLTEEEEENDPC 215 (249)
T ss_pred HHhCcHhhhcchhhhcCCcc
Confidence 45566555554444433
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0032 Score=56.25 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh
Q 041509 8 NATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL 87 (211)
Q Consensus 8 ~~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~ 87 (211)
.+.+||+.+.-...+..-..+-.-|..-.....|+.|||+ |.|.|....++-.-.| .--.++-+|.+|..-++.-.-.
T Consensus 81 m~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDv-G~GPgtgl~A~n~i~P-dl~sa~ile~sp~lrkV~~tl~ 158 (484)
T COG5459 81 MAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDV-GAGPGTGLWALNDIWP-DLKSAVILEASPALRKVGDTLA 158 (484)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhcc-CCCCchhhhhhcccCC-CchhhhhhccCHHHHHHHHHHH
Confidence 4456777653322221111111222333445678999999 8888764333333333 2456788898887665544333
Q ss_pred c-CCCCcEEEEEcchHHHhhhc--cCCccEEEEc------CCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 88 G-LDASHVEFVIGDAQSLLLSH--FREADFVLID------CNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 88 ~-~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD------~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+ -...+.....+|..+-...+ .+.|+++++- ........+++.+..++.|||.+++++---.
T Consensus 159 ~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 159 ENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhcccccCCCCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 2 11233334444443221112 4567777653 2222345588888889999999998874433
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0036 Score=57.93 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=87.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH- 108 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l- 108 (211)
+....+..++-+|||. =+++|.-++..|..++. -++|++-|.++..+...++|.+ +..+.|+..++||..++-..
T Consensus 101 ~~~~~~~~~~l~vLea-lsAtGlrslRya~El~~-v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~ 178 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEA-LSATGLRSLRYAKELPG-VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP 178 (525)
T ss_pred cchhhhccCcchHHHH-hhhhhHHHHHHHHHhcc-hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc
Confidence 3444556677889999 49999999999999864 7899999999999999999999 45678999999998877544
Q ss_pred --cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 --FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...||+|=+|.--. -..+++.+.+.++.||.+.|.
T Consensus 179 ~~~~~FDvIDLDPyGs-~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 179 MVAKFFDVIDLDPYGS-PSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccccccceEecCCCCC-ccHHHHHHHHHhhcCCEEEEE
Confidence 37899999996432 235777777777877766553
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=48.77 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHhhcCCc---CCChhHHHHHHHHHhhC-CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH
Q 041509 5 SAENATKAYLKTLKMGQK---AKEPNEAEFISALAAGN-NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY 80 (211)
Q Consensus 5 ~~~~~~~ay~~~~~~~~~---~~~~~~~~lL~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~ 80 (211)
.+..+..++++.+-..+. ---|..-+|+..+.... .|.+|+|| |||.--.|+...... ++.+++++|+|..++
T Consensus 66 ~D~e~~~~~~r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDi-gCGlNPlalp~~~~~--~~a~Y~a~DID~~~v 142 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDI-GCGLNPLALPWMPEA--PGATYIAYDIDSQLV 142 (251)
T ss_dssp THHHHHHHHHHHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEE-T-TTCHHHHHTTTSS--TT-EEEEEESBHHHH
T ss_pred CCHHHHHHHHHHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhh-hccCCceehhhcccC--CCcEEEEEeCCHHHH
Confidence 344445566554332221 11233445666665543 48999999 999999888655332 367999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 81 KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 81 ~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.....+.-+.-..++.+.|...-.+ .+..|+.++=
T Consensus 143 e~l~~~l~~l~~~~~~~v~Dl~~~~~--~~~~DlaLll 178 (251)
T PF07091_consen 143 EFLNAFLAVLGVPHDARVRDLLSDPP--KEPADLALLL 178 (251)
T ss_dssp HHHHHHHHHTT-CEEEEEE-TTTSHT--TSEESEEEEE
T ss_pred HHHHHHHHhhCCCcceeEeeeeccCC--CCCcchhhHH
Confidence 99999888333456666777765433 4678998863
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0072 Score=54.42 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=76.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++..++++ |||.|-...+++.-- ...+++++.++.-+.++..... .+.++-.++.+|...... -++.||++
T Consensus 108 ~~~~~~~~~~-~~g~~~~~~~i~~f~---~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDV-GTGVGGPSRYIAVFK---KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGV 182 (364)
T ss_pred Cccccccccc-CcCcCchhHHHHHhc---cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcE
Confidence 3556679999 999999999888652 5789999999988877776665 445555558888887644 37899998
Q ss_pred -EEcC--CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 -LIDC--NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 -fiD~--~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
|+|. ..+.....++++.+.++|||..++
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 4564 345678899999999999776554
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.041 Score=48.72 Aligned_cols=102 Identities=21% Similarity=0.141 Sum_probs=70.2
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-c-hH---HHhhhc-
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-D-AQ---SLLLSH- 108 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-d-a~---e~l~~l- 108 (211)
+..+...+||-+ |+| +|..|+..|+++. ..+|+.+|..+..++.||+ +. .+.+..... + +. +.+...
T Consensus 165 ~~vk~Gs~vLV~-GAGPIGl~t~l~Aka~G--A~~VVi~d~~~~Rle~Ak~-~G--a~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 165 AGVKKGSKVLVL-GAGPIGLLTGLVAKAMG--ASDVVITDLVANRLELAKK-FG--ATVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred cCcccCCeEEEE-CCcHHHHHHHHHHHHcC--CCcEEEeecCHHHHHHHHH-hC--CeEEeeccccccHHHHHHHHHhhc
Confidence 455678899999 877 6888999999985 5899999999999999999 54 112222222 1 22 222222
Q ss_pred -cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 -FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 -~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
...+|+.|-....+ ..++.....++++|.++++..
T Consensus 239 g~~~~d~~~dCsG~~---~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAE---VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred cccCCCeEEEccCch---HHHHHHHHHhccCCEEEEecc
Confidence 24689998655543 456666777888999877663
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=50.88 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=42.9
Q ss_pred CcEEEEEcchHHHhhhc-cCCccEEEEcCCcC---------------cH----HHHHHHHHhcCCCCcEEEEEec
Q 041509 92 SHVEFVIGDAQSLLLSH-FREADFVLIDCNLE---------------NH----EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 92 ~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~---------------~y----~~~l~~~~~~L~pgG~viv~dn 146 (211)
...++++||+.+.+..+ +++||+||+|.+-. +| .+++.++.++|+|+|.+++..+
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45679999999988766 57999999997521 12 3678899999999999887543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.013 Score=50.05 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=75.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh--hccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL--SHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~--~l~~~fD~ 114 (211)
.+.+..+||=+ |.++|++-...+....+ .|-|++||.++..-...- |++....+|--+..||..--+ -+-+-.|+
T Consensus 153 hikpGsKVLYL-GAasGttVSHvSDiVGp-eG~VYAVEfs~rsGRdL~-nmAkkRtNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGSKVLYL-GAASGTTVSHVSDIVGP-EGCVYAVEFSHRSGRDLI-NMAKKRTNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCceEEEe-eccCCceeehhhcccCC-CceEEEEEecccchHHHH-HHhhccCCceeeeccCCCchheeeeeeeEEE
Confidence 35678899999 99999998888887765 899999999986533222 222224667778888865322 12457899
Q ss_pred EEEcCCcCcHHHHHHHHHh-cCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQA-GNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~-~L~pgG~viv~ 144 (211)
||.|-+.++..+.+..-.+ .|++||-+++.
T Consensus 230 IFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 230 IFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 9999988877666654444 38998888775
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0067 Score=46.44 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=36.0
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcCCc--Cc----HHHHHHHHHhcCCCCcEE
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDCNL--EN----HEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~~~--~~----y~~~l~~~~~~L~pgG~v 141 (211)
++++..||+.+.++++...+|.||+|+-. .+ -.++++.+.++++|||.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l 86 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTL 86 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEE
Confidence 47889999999999888999999999722 12 278999999999986544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=49.74 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=39.9
Q ss_pred EEEEEcchHHHhhhc-cCCccEEEEcCCc--------------Cc----HHHHHHHHHhcCCCCcEEEEE
Q 041509 94 VEFVIGDAQSLLLSH-FREADFVLIDCNL--------------EN----HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 94 V~~~~gda~e~l~~l-~~~fD~VfiD~~~--------------~~----y~~~l~~~~~~L~pgG~viv~ 144 (211)
.++++||+.+.++.+ ++++|+||.|.+- .. +.++++++.+.|+|||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 478999999999877 6899999999532 11 246778889999998877664
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.084 Score=47.27 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=68.7
Q ss_pred HhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc-hHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD-AQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd-a~e~l~~l--~~~ 111 (211)
....+.++||.. |+|. |..++.+|++.+ .+++++++.+++..+.+++... ...+.....+ ..+.+..+ ...
T Consensus 180 ~~~~~g~~VlV~-g~G~vG~~~~~la~~~g--~~~vi~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 180 AEVKPGDTVAVW-GCGPVGLFAARSAKLLG--AERVIAIDRVPERLEMARSHLG--AETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred ccCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcCC--cEEEcCCcchHHHHHHHHHcCCCC
Confidence 444567889999 8877 999999998863 2479999999999999987532 1222222332 33333322 236
Q ss_pred ccEEEEcCCc------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNL------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+||--... .+....++.+.+.|+|+|.++...
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 9987643211 112456788888899999887764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.06 Score=46.62 Aligned_cols=97 Identities=20% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH----------------------------hc---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI----------------------------LG--- 88 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~----------------------------~~--- 88 (211)
+..+||-= |||.|-.+..+|.. +-.+.+.|.+--|+-..+-- ++
T Consensus 56 ~~~~VLVP-GsGLGRLa~Eia~~----G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 56 SKIRVLVP-GSGLGRLAWEIAKL----GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CccEEEEc-CCCcchHHHHHhhc----cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 35689999 99999999989864 67899999999886432211 11
Q ss_pred -C---------CCCcEEEEEcchHHHhhhc--cCCccEE----EEcCCcCcHHHHHHHHHhcCCCCcEEE
Q 041509 89 -L---------DASHVEFVIGDAQSLLLSH--FREADFV----LIDCNLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 89 -~---------~~~~V~~~~gda~e~l~~l--~~~fD~V----fiD~~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
. ...+..+..||..++-... .+.||.| |||.. ++..+|++.|..+|+|||..|
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEE
Confidence 0 1235677788887775532 3689998 56774 368899999999999988444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0057 Score=49.15 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC---CCcE---EEEEcchHHHhhhccCC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD---ASHV---EFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~---~~~V---~~~~gda~e~l~~l~~~ 111 (211)
..+++|||++|..+|.+++.+|..++ ...|.-.|-|++.++-.++-.. +. .++. ++..-.+... ....+
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~--~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq--~eq~t 103 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ--QEQHT 103 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecC--CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH--HhhCc
Confidence 34578999955668888888887764 6889999999998877765443 11 1222 2222222221 12569
Q ss_pred ccEEEE-cCC--cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLI-DCN--LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~Vfi-D~~--~~~y~~~l~~~~~~L~pgG~viv 143 (211)
||+|+. |+- .+..+...+.+..+|+|.|.-++
T Consensus 104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 999985 443 23457788999999999998665
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.11 Score=45.69 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=60.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.++||-+++.++|..++.+|+++. ..+|++++.+++..+.|++ +. ...-+.....+..+... ..+.+|+||-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~-lG-a~~vi~~~~~~~~~~~~-~~g~~D~vid~ 242 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLARE-MG-ADKLVNPQNDDLDHYKA-EKGYFDVSFEV 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHH-cC-CcEEecCCcccHHHHhc-cCCCCCEEEEC
Confidence 35678887822457777777887752 2479999999999998876 32 11111111223333322 23469988744
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.... ..++.+.+.|+++|.++..-
T Consensus 243 ~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 243 SGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 3322 35666777788999877654
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.27 Score=41.81 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=61.7
Q ss_pred CCcCCChhHH--HHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcE
Q 041509 20 GQKAKEPNEA--EFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHV 94 (211)
Q Consensus 20 ~~~~~~~~~~--~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V 94 (211)
.|-.+++++. +.+...-+. ..+++||=+ |=.--. ++++|.. ....+|+-+|+|+..++..++..+ ++. |
T Consensus 21 DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~l-GDDDLt-SlA~al~--~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i 94 (243)
T PF01861_consen 21 DQGYATPETTLRRAALMAERGDLEGKRILFL-GDDDLT-SLALALT--GLPKRITVVDIDERLLDFINRVAEEEGLP--I 94 (243)
T ss_dssp T---B-HHHHHHHHHHHHHTT-STT-EEEEE-S-TT-H-HHHHHHH--T--SEEEEE-S-HHHHHHHHHHHHHHT----E
T ss_pred ccccccHHHHHHHHHHHHhcCcccCCEEEEE-cCCcHH-HHHHHhh--CCCCeEEEEEcCHHHHHHHHHHHHHcCCc--e
Confidence 3445667664 222122221 357899999 844333 3545433 235899999999999999998887 543 9
Q ss_pred EEEEcchHHHhhh-ccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEE
Q 041509 95 EFVIGDAQSLLLS-HFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 95 ~~~~gda~e~l~~-l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~v 141 (211)
+.++.|..+-||. +.++||.+|.|.+-. ...-++......|+..|..
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-E
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCce
Confidence 9999999998875 378999999998643 3455666667777766643
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.026 Score=46.72 Aligned_cols=118 Identities=17% Similarity=0.066 Sum_probs=72.5
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH----HHHHHHHhc---CCCCcEEEEEcch
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE----YKLSKKILG---LDASHVEFVIGDA 101 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~----~~~Ar~~~~---~~~~~V~~~~gda 101 (211)
++.|.+ +...+...|+|+ -.|.||.|-.++.++.+ .|.|+++-.++.. .+..+.+.. ....+++.+-++.
T Consensus 38 ~E~L~F-aGlkpg~tVid~-~PGgGy~TrI~s~~vgp-~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~ 114 (238)
T COG4798 38 GEVLAF-AGLKPGATVIDL-IPGGGYFTRIFSPAVGP-KGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL 114 (238)
T ss_pred cceeEE-eccCCCCEEEEE-ecCCccHhhhhchhcCC-ceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc
Confidence 444443 356678889999 79999999999999976 6799998766541 111111111 1223444443333
Q ss_pred HHHhhhccCCccEEEEc--------CCc-C-cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 102 QSLLLSHFREADFVLID--------CNL-E-NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD--------~~~-~-~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.... .....|+++.. -+. . .-...+..+++.|+|||.++|.|..-.+|
T Consensus 115 ~A~~--~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 115 VALG--APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG 172 (238)
T ss_pred cccC--CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence 2221 12344555431 111 2 23668888999999999999988776665
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.18 Score=44.59 Aligned_cols=100 Identities=20% Similarity=0.132 Sum_probs=64.6
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l-~~~ 111 (211)
+...+.++||-. |+ ++|..++.+|++. +.+|++++.+++..+.+++.+. ...-+..... +..+.+..+ .+.
T Consensus 154 ~~~~~g~~VlV~-GaaG~vG~~aiqlAk~~---G~~Vi~~~~~~~k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 154 CSPKKGDSVFVS-AASGAVGQLVGQLAKLH---GCYVVGSAGSSQKVDLLKNKLG-FDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred cCCCCCCEEEEe-cCccHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHhcC-CCEEEECCCcccHHHHHHHHCCCC
Confidence 345567888888 64 6888888888875 6789999999988887764443 1111221112 343433332 346
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|++| |+--. ..++.+.+.|+++|.++++
T Consensus 229 vD~v~-d~vG~---~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYF-DNVGG---DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEE-ECCCH---HHHHHHHHHhccCCEEEEE
Confidence 89887 54332 4667778888999988764
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.19 Score=43.14 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCC
Q 041509 35 LAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 35 l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
.....++++||-. | .+.|..++.+|++. +.+|+++..+++..+.+++ +. ...-+.....+..+.+..+ .+.
T Consensus 138 ~~~~~~g~~vlI~-ga~g~vG~~aiqlA~~~---G~~vi~~~~s~~~~~~l~~-~G-a~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 138 ICKPKAGETVVVN-GAAGAVGSLVGQIAKIK---GCKVIGCAGSDDKVAWLKE-LG-FDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred hcCCCCCCEEEEe-cCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CCEEEeCCCccHHHHHHHHCCCC
Confidence 3445567788877 5 67888888888875 5689999999998888876 32 2111222222333333322 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+|| |+--. ..++...+.|+++|.++...
T Consensus 212 vd~vl-d~~g~---~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYF-DNVGG---EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEE-ECCCH---HHHHHHHHhhccCCEEEEEc
Confidence 99887 54332 45677788888999887643
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.17 Score=43.48 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=61.5
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
..+..+||.. |+| +|..++.+|... +.+|++++.+++..+.+++. . ....+.....+..+.+... ...+|++
T Consensus 163 ~~~~~~vli~-g~g~vG~~~~~la~~~---G~~V~~~~~s~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETVLVI-GLGGLGLNAVQIAKAM---GAAVIAVDIKEEKLELAKEL-G-ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHh-C-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 4556788888 765 688888888875 57899999999988888652 2 2111111111222222111 4579976
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+... ...++.+.+.|+++|.++...
T Consensus 237 i-d~~g~--~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 F-DFVGT--QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred E-ECCCC--HHHHHHHHHHhhcCCEEEEEC
Confidence 5 43211 246777788888999887653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.24 Score=42.80 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=65.7
Q ss_pred HhhCCCCeEEEEccccHHH--HHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC-CCCcEEEEEcchHHH---hh--h
Q 041509 36 AAGNNAQLMVVACANVANA--TTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL-DASHVEFVIGDAQSL---LL--S 107 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~--stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~-~~~~V~~~~gda~e~---l~--~ 107 (211)
+....-+..||| |||.=. .+-..|++..+ +.+|+-+|.||-.+..+|..+.+ ...+..++.+|..+. |. .
T Consensus 64 a~~~GIrQFLDl-GsGlPT~~nvHevAq~~~P-~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 64 AEEAGIRQFLDL-GSGLPTAGNVHEVAQRVAP-DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp HCTT---EEEEE-T--S--SS-HHHHHHHH-T-T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred HHhcCcceEEEc-ccCCCCCCCHhHHHHhhCC-CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHH
Confidence 333356789999 988643 24557777654 89999999999999999998883 234699999997653 32 1
Q ss_pred c------cCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 H------FREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 l------~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. ..++-++++.- +.++-...++.+.+.|.||..+++.+-
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 1 34555565542 334668899999999999777777553
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.076 Score=45.40 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------CCCCc---EEEEEcchHHHhhhcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------LDASH---VEFVIGDAQSLLLSHF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~~~~~---V~~~~gda~e~l~~l~ 109 (211)
++++|||+ |+|||.-++..|... ...+..-|...-.... +.|.. .+... ..+..|++.+.... .
T Consensus 86 ~~~~vlEL-GsGtglvG~~aa~~~---~~~v~ltD~~~~~~~L-~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~-~ 159 (248)
T KOG2793|consen 86 KYINVLEL-GSGTGLVGILAALLL---GAEVVLTDLPKVVENL-KFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR-L 159 (248)
T ss_pred cceeEEEe-cCCccHHHHHHHHHh---cceeccCCchhhHHHH-HHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc-c
Confidence 57789999 999998888777654 4566666654433332 22221 22222 34456777665433 3
Q ss_pred CC-ccEEEE-cC--CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 RE-ADFVLI-DC--NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~-fD~Vfi-D~--~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.. +|+|+. |. ..+.+......+..+|..++.+++..
T Consensus 160 ~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred CCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 34 899885 32 33456777777777777677555544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.087 Score=38.71 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=65.1
Q ss_pred ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCcCcHH
Q 041509 50 NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNLENHE 125 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~~~y~ 125 (211)
||.|..+..+++.+.+ .+ .|+.+|.+++..+.+++. .+.++.||+.+ .+.+. -.+.|.+++..+.....
T Consensus 4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 4667888999999987 66 899999999998887653 26799999865 34443 45899999887655333
Q ss_pred HHHHHHHhcCCCCcEEEEEec-CCCCCceecCCCcEEEee
Q 041509 126 GVLRAVQAGNKPNGAVVVGYN-AFRKGSWRSSGSKSQLLP 164 (211)
Q Consensus 126 ~~l~~~~~~L~pgG~viv~dn-~~~~~~~~~~~~~~v~lp 164 (211)
-..-...+.+.|...+++.-+ .-....+...+.+.++.|
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 233333333445455544221 101112334555665554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.035 Score=47.67 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCCCeEEEEccccHHHHHHH-HHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC--------------------------
Q 041509 39 NNAQLMVVACANVANATTLA-LAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA-------------------------- 91 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~-la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~-------------------------- 91 (211)
.+++++||| |||.- ++ +..+.+ .--+|+..|..+...+..++.+++-.
T Consensus 55 ~~g~~llDi-GsGPt---iy~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 55 VKGETLLDI-GSGPT---IYQLLSACE-WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp S-EEEEEEE-S-TT-----GGGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred cCCCEEEEe-CCCcH---HHhhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 356789999 99863 33 333333 35789999999999987777665100
Q ss_pred ---CcEE-EEEcchHHHhh--h---ccCCccEEEEc-------CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 92 ---SHVE-FVIGDAQSLLL--S---HFREADFVLID-------CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 92 ---~~V~-~~~gda~e~l~--~---l~~~fD~VfiD-------~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..|+ ++..|..+--+ . +..+||.|+.- .+.+.|...++.+.++|+|||-++++.
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0122 44444433211 1 12349998764 255689999999999999988887754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.17 Score=43.73 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=71.8
Q ss_pred HHHHHHHHHhh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 8 NATKAYLKTLK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 8 ~~~~ay~~~~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
.+.+.|.+... ..+....| .-.++..+-...+...|-|+ |||-+-. |+.- .-.|+++|.-+
T Consensus 147 ~afdlYH~gfr~QV~kWP~nP-ld~ii~~ik~r~~~~vIaD~-GCGEaki----A~~~---~~kV~SfDL~a-------- 209 (325)
T KOG3045|consen 147 TAFDLYHAGFRSQVKKWPENP-LDVIIRKIKRRPKNIVIADF-GCGEAKI----ASSE---RHKVHSFDLVA-------- 209 (325)
T ss_pred HHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHhCcCceEEEec-ccchhhh----hhcc---ccceeeeeeec--------
Confidence 45566666533 22223333 23344444333334457899 9998864 3222 35799998743
Q ss_pred HhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC--CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 86 ILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC--NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 86 ~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~--~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-+=+++..|...+ |-.+++.|+++... ...+..++++++.+.|+|||.++|+.
T Consensus 210 ------~~~~V~~cDm~~v-Pl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 210 ------VNERVIACDMRNV-PLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred ------CCCceeeccccCC-cCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 1223455666653 42378999998664 34588999999999999999999987
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.27 Score=42.72 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=60.2
Q ss_pred CeEEEEcc--ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 42 QLMVVACA--NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 42 ~~VLEi~G--tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
++||-. | .+.|..++.+|++. +. +|++++.+++..+.+++.+. ...-+.....+..+.+..+ .+.+|+||
T Consensus 156 ~~VlI~-ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s~~~~~~~~~~lG-a~~vi~~~~~~~~~~i~~~~~~gvd~vi- 229 (345)
T cd08293 156 QTMVVS-GAAGACGSLAGQIGRLL---GCSRVVGICGSDEKCQLLKSELG-FDAAINYKTDNVAERLRELCPEGVDVYF- 229 (345)
T ss_pred CEEEEE-CCCcHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHCCCCceEEE-
Confidence 688887 5 57888888888875 55 79999999988888776443 2111221122333333333 35799887
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+-.. ..++.+.+.|+++|.++..
T Consensus 230 d~~g~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 DNVGG---EISDTVISQMNENSHIILC 253 (345)
T ss_pred ECCCc---HHHHHHHHHhccCCEEEEE
Confidence 54433 2356777888999988764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.33 Score=42.01 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=63.3
Q ss_pred HHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-cC
Q 041509 35 LAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-FR 110 (211)
Q Consensus 35 l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~~ 110 (211)
.+...+.++||=. | .++|..++.+|++. +.+|++++.+++..+.+++ +. ...-+.... .+..+.+... .+
T Consensus 133 ~~~~~~g~~VLI~-ga~g~vG~~aiqlAk~~---G~~Vi~~~~s~~~~~~~~~-lG-a~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 133 ICGVKGGETVMVN-AAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKVAYLKK-LG-FDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HhCCCCCCEEEEe-CCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CCEEEeccccccHHHHHHHhCCC
Confidence 3445667888888 6 56888888888775 6689999999988888864 32 211122111 1233333322 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+|+|| |+--. ..++.+.+.|+++|.++..
T Consensus 207 gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYF-DNVGG---EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEe
Confidence 699887 54432 3457778888999988764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.34 Score=43.81 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=62.9
Q ss_pred CCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC----CCcEEEEE----cchHHHhhhc
Q 041509 39 NNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD----ASHVEFVI----GDAQSLLLSH 108 (211)
Q Consensus 39 ~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~----~~~V~~~~----gda~e~l~~l 108 (211)
.+.++||-+ | .+.|..++.+|++......+|+++|.+++..+.|++.+... .....++. .+..+.+..+
T Consensus 174 ~~g~~VlV~-G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAIL-GGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEE-eCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 445778877 5 56888888888775321248999999999999998864310 01112222 2333333332
Q ss_pred --cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 --FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|.||..... ...++...+.++++|.+++.
T Consensus 253 t~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEEE
Confidence 3469988875433 24566677778877876553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.019 Score=51.68 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
+++..--=+.++++...++..|+|+| |..|..|..+|.-++. .|+++++|.+++.++.-++.++ .....++..+||+
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~c-aapg~KTsH~a~i~~n-~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df 273 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTC-AAPGNKTSHLAAIMRN-QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF 273 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeec-cccccchhhHHHHhhc-cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc
Confidence 34443334666777788889999997 9999999999988864 8999999999999998888887 3356688889999
Q ss_pred HHHh-hhccCCccEEEEcC
Q 041509 102 QSLL-LSHFREADFVLIDC 119 (211)
Q Consensus 102 ~e~l-~~l~~~fD~VfiD~ 119 (211)
..+. +......-.|++|.
T Consensus 274 ~~t~~~~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 274 LNTATPEKFRDVTYILVDP 292 (413)
T ss_pred cCCCCcccccceeEEEeCC
Confidence 8751 22234567778774
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.22 Score=46.83 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE--E-------------Ecch
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF--V-------------IGDA 101 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~--~-------------~gda 101 (211)
..++.+|+-+ |+| .|..++..|.++ +.+|+.+|.+++..+.|++ +. .+.+.+ - ..+.
T Consensus 162 ~~pg~kVlVi-GaG~iGL~Ai~~Ak~l---GA~V~a~D~~~~rle~aes-lG--A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVI-GAGVAGLAAIGAAGSL---GAIVRAFDTRPEVAEQVES-MG--AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEE-CCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cC--CeEEEeccccccccccchhhhcchhH
Confidence 3578999999 776 588888888876 5689999999999999987 33 111111 1 1111
Q ss_pred HHH----hhhccCCccEEEEcCCcCc--HHHH-HHHHHhcCCCCcEEE
Q 041509 102 QSL----LLSHFREADFVLIDCNLEN--HEGV-LRAVQAGNKPNGAVV 142 (211)
Q Consensus 102 ~e~----l~~l~~~fD~VfiD~~~~~--y~~~-l~~~~~~L~pgG~vi 142 (211)
.+. +.+..+.+|+|+-.+..+. -... .++..+.++|||.++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIV 282 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEE
Confidence 111 1111246999987765432 1234 488888899977654
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.47 Score=41.32 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=64.7
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l-~~~ 111 (211)
+...++++||-. | .+.|..++.+|++. +.+|+++..+++..+.+++.+. ...-+..-.. +..+.+..+ .+.
T Consensus 147 ~~~~~g~~VlI~-Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~~~~~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 147 CKPKKGETVFVS-AASGAVGQLVGQLAKLK---GCYVVGSAGSDEKVDLLKNKLG-FDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred cCCCCCCEEEEe-cCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHhcC-CceeEEcCCcccHHHHHHHhCCCC
Confidence 445667889888 6 47788888888875 6789999999988888876443 1111221111 333333322 357
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+|| |+-.. ..++.+.+.|+++|.++..
T Consensus 222 vd~v~-d~~g~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYF-DNVGG---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEE-ECCCH---HHHHHHHHHhccCcEEEEe
Confidence 99887 54332 4567778888899988764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.37 Score=42.62 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=67.0
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-RE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~ 111 (211)
....+.+.||-. | .|.|..++-||+++ +++++.+-.+++..+.+++. +...-|.+...|..+.+.++ . ..
T Consensus 138 ~~l~~g~~VLV~-gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~k~~~~~~l--GAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 138 AGLKPGETVLVH-GAAGGVGSAAIQLAKAL---GATVVAVVSSSEKLELLKEL--GADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred cCCCCCCEEEEe-cCCchHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHhc--CCCEEEcCCcccHHHHHHHHcCCCC
Confidence 445667899998 5 67788888899886 43666666666655555543 22334566677777666555 3 36
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+|+|| |.--. +.+......|+++|.++.+-+.-
T Consensus 212 vDvv~-D~vG~---~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVL-DTVGG---DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEE-ECCCH---HHHHHHHHHhccCCEEEEEecCC
Confidence 99997 33322 44555666677889888766543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.28 Score=43.54 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=59.8
Q ss_pred hCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.++||-. | .++|..++.+|++. +. +|++++.+++..+.|++. +...-+.....+..+.+..+ .+.+|+
T Consensus 189 i~~g~~VlV~-G~G~vG~~a~~lak~~---G~~~Vi~~~~~~~r~~~a~~~--Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 189 VRPGQSVAVV-GLGGVGLSALLGAVAA---GASQVVAVDLNEDKLALAREL--GATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCcEEEEcCCHHHHHHHHHc--CCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4456788778 5 35566667777764 44 799999999999888653 21111221122333333322 347998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||-.... ...++.+.+.|+++|.++...
T Consensus 263 vid~~G~---~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFEMAGS---VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEECCCC---hHHHHHHHHHHhcCCEEEEEc
Confidence 8733322 245666677788899887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=44.29 Aligned_cols=93 Identities=17% Similarity=0.072 Sum_probs=62.7
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCC-
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCN- 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~- 120 (211)
+++|+| ||+|-+++.+-.+- --.+.++|+++.+.+.-+.|+. ....+|..++-... .+.+|+++-..+
T Consensus 2 ~~~dlF-sG~Gg~~~g~~~ag---~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLF-SGIGGFSLGLEQAG---FEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET--TTTHHHHHHHHTT---EEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEc-cCccHHHHHHHhcC---cEEEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccCC
Confidence 589996 99998888777652 2478999999999999998876 78899988765432 226999886521
Q ss_pred --------------cC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 --------------LE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 --------------~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .+.++++.+.. ++| . +++.+|+-
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~-~~P-k-~~~~ENV~ 112 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIVKE-LKP-K-YFLLENVP 112 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHHHH-HS--S-EEEEEEEG
T ss_pred ceEeccccccccccccchhhHHHHHHHhh-ccc-e-EEEecccc
Confidence 11 24566666654 577 3 45569974
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.17 Score=43.18 Aligned_cols=119 Identities=19% Similarity=0.159 Sum_probs=66.6
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
..+.....+..+...+.... +.. ..|+=.. .+..+++ .-+++.+|..|+-.+.-++++.+ ..+|+++.+|+.+
T Consensus 42 ~p~~l~~yl~~v~~~n~~~~-l~~-YPGSP~i---a~~llR~-qDrl~l~ELHp~d~~~L~~~~~~-~~~v~v~~~DG~~ 114 (245)
T PF04378_consen 42 LPPALQPYLDAVRALNPDGE-LRF-YPGSPAI---AARLLRE-QDRLVLFELHPQDFEALKKNFRR-DRRVRVHHRDGYE 114 (245)
T ss_dssp S-GGGHHHHHHHHHHSSSSS---E-EE-HHHH---HHHHS-T-TSEEEEE--SHHHHHHHTTS--T-TS-EEEE-S-HHH
T ss_pred chHHHHHHHHHHHHhccCCC-cCc-CCCCHHH---HHHhCCc-cceEEEEecCchHHHHHHHHhcc-CCccEEEeCchhh
Confidence 44455566666655443332 566 5654443 3334444 78999999999999988888874 4689999999999
Q ss_pred HhhhccC---CccEEEEcCC---cCcHHHHHHHHHhcCC--CCcEEEEEecCCC
Q 041509 104 LLLSHFR---EADFVLIDCN---LENHEGVLRAVQAGNK--PNGAVVVGYNAFR 149 (211)
Q Consensus 104 ~l~~l~~---~fD~VfiD~~---~~~y~~~l~~~~~~L~--pgG~viv~dn~~~ 149 (211)
.+..+-. +=-+|+||.. +.+|.+..+.+...++ |.|++++=.-++.
T Consensus 115 ~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~ 168 (245)
T PF04378_consen 115 GLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKD 168 (245)
T ss_dssp HHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS
T ss_pred hhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeeccc
Confidence 8766533 3459999984 4578666665544332 4687776555444
|
; PDB: 2OO3_A. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.086 Score=42.79 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=30.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
..+...|||-+ +|+|.+ +..|..+ +-+.+++|++++.+++|++
T Consensus 189 t~~gdiVlDpF-~GSGTT-~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPF-AGSGTT-AVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT--TTTHH-HHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhh-hccChH-HHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 35678899996 999965 4444444 6689999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.023 Score=46.24 Aligned_cols=95 Identities=21% Similarity=0.166 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--------------CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--------------ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--------------~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|.||.++.+|..+...+-+|+++|+|++.++..++-.... ..+..+ ..|..+.+. ..|++|
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai~----~adv~~ 81 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAIK----DADVVF 81 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHHH----H-SEEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhhh----ccceEE
Confidence 4677777777777666779999999999887765432110 122222 233333332 478888
Q ss_pred EcCCc----------CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNL----------ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~----------~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.-+. .......+.+.+.+++ |.++|......+|
T Consensus 82 I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~STvppG 125 (185)
T PF03721_consen 82 ICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIESTVPPG 125 (185)
T ss_dssp E----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESSSSSTT
T ss_pred EecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEccEEEEe
Confidence 86321 1246778888888887 7788878888887
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.76 Score=39.11 Aligned_cols=96 Identities=22% Similarity=0.143 Sum_probs=58.1
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
.+.++||-+ |+ +.|..++.+|++. +. +|+.++.+++..+.|++. . ...-+. ..+..+.+..+ ...+|+
T Consensus 119 ~~g~~VlV~-G~G~vG~~~~~~ak~~---G~~~Vi~~~~~~~r~~~a~~~-G-a~~~i~--~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVV-GAGMLGLTAAAAAAAA---GAARVVAADPSPDRRELALSF-G-ATALAE--PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHc-C-CcEecC--chhhHHHHHHHhCCCCCCE
Confidence 456788888 54 5677777777765 44 499999999988888763 2 111111 11112222222 346998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|--.... ..++.+.+.|+|+|.+++.-
T Consensus 191 vid~~G~~---~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGAT---AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCCh---HHHHHHHHHhcCCCEEEEec
Confidence 87433222 45667778888999887654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.66 Score=38.12 Aligned_cols=98 Identities=22% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-ccCCccEEE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-HFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l~~~fD~Vf 116 (211)
.+.++||-. |+| +|..++.++.+. +.+|+.++.+++..+.+++.-. ...+.....+..+.+.. ..+.+|+++
T Consensus 133 ~~~~~vli~-g~~~~G~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVL-GAGGVGLLAAQLAKAA---GARVIVTDRSDEKLELAKELGA--DHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHHhCC--ceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 567789998 766 577777777764 6799999999988877765311 11111111222221111 146899998
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-..... ...+.+.+.|+++|.++...
T Consensus 207 ~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 544431 34566667778888877654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=36.12 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHccCCC---cEEEEE-eCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHH
Q 041509 51 VANATTLALAAAAHQTG---GRVVCI-LRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEG 126 (211)
Q Consensus 51 g~G~stl~la~a~~~~~---g~v~ti-E~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~ 126 (211)
|+|-.+..|+..+-..+ .+|+-+ +.+++..+...+.+. +.+...+..+.+. ..|+||+......+.+
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~advvilav~p~~~~~ 76 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----VQATADDNEEAAQ----EADVVILAVKPQQLPE 76 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----TEEESEEHHHHHH----HTSEEEE-S-GGGHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----cccccCChHHhhc----cCCEEEEEECHHHHHH
Confidence 45666666666665545 689844 999998877765543 3444456666655 4799999999999999
Q ss_pred HHHHHHhcCCCCcEEEE
Q 041509 127 VLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 127 ~l~~~~~~L~pgG~viv 143 (211)
.++.+ +.+.+ +.++|
T Consensus 77 v~~~i-~~~~~-~~~vi 91 (96)
T PF03807_consen 77 VLSEI-PHLLK-GKLVI 91 (96)
T ss_dssp HHHHH-HHHHT-TSEEE
T ss_pred HHHHH-hhccC-CCEEE
Confidence 99998 54555 44554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.27 Score=40.61 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=58.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHH------hhhc-cC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSL------LLSH-FR 110 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~------l~~l-~~ 110 (211)
.+..+|||+ |+..|..+--.-+... +.|.|.+||+-+ +.. ..-++++.| |..+. ...+ +.
T Consensus 68 ~p~~~VlD~-G~APGsWsQVavqr~~-p~g~v~gVDllh---------~~p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDC-GAAPGSWSQVAVQRVN-PNGMVLGVDLLH---------IEP-PEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEc-cCCCChHHHHHHHhhC-CCceEEEEeeee---------ccC-CCCcccccccccCCHHHHHHHHHhCCCC
Confidence 467899999 9999998777776664 489999999842 221 233556666 43221 1222 46
Q ss_pred CccEEEEcCCcC-------cHHHHHH-------HHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLE-------NHEGVLR-------AVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~-------~y~~~l~-------~~~~~L~pgG~viv 143 (211)
+.|.|+.|-... ++....+ .....+.|+|.+++
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 899999995321 2333333 33455789887654
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.45 Score=41.87 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeC---ChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILR---RVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~---~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
.+.++||-+ |+ ++|..++.+|++. +.+|+.++. +++..+.|++. . .+.+.....+..+ .. ..+.+|+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~~~~~~-G--a~~v~~~~~~~~~-~~-~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPKADIVEEL-G--ATYVNSSKTPVAE-VK-LVGEFDL 241 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHc-C--CEEecCCccchhh-hh-hcCCCCE
Confidence 356788888 54 4577777777775 558999987 67777777642 2 1112111122222 11 2357998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||--.... ..+....+.|+++|.++++-
T Consensus 242 vid~~g~~---~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 242 IIEATGVP---PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEECcCCH---HHHHHHHHHccCCcEEEEEe
Confidence 87544432 35677788889999877644
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=39.83 Aligned_cols=97 Identities=20% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH-Hhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHH
Q 041509 52 ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK-ILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVL 128 (211)
Q Consensus 52 ~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~-~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l 128 (211)
.|..+..+|..+...+-+|+.+...+ .++.-++ -+. .......+.............++||+||+...-.+..+.+
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l 84 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQLEQAL 84 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGGHHHHH
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccchHHHH
Confidence 34455566655544467899999988 4444332 222 1111111111111111111257999999987766788899
Q ss_pred HHHHhcCCCCcEEEEEecCCC
Q 041509 129 RAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 129 ~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.+.+.+.|+..+++..|-+.
T Consensus 85 ~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 85 QSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp HHHCTGEETTEEEEEESSSSS
T ss_pred HHHhhccCCCcEEEEEeCCCC
Confidence 999999998767888788665
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.64 Score=40.96 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=60.9
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-. |+ ++|..++.+|++. +. +|++++.+++..+.+++. +...-+.....+..+.+..+ ...+
T Consensus 173 ~~~~g~~VlV~-G~g~vG~~a~~~ak~~---G~~~Vi~~~~~~~~~~~~~~~--Ga~~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 173 GVKRGDSVAVI-GCGGVGDAAIAGAALA---GASKIIAVDIDDRKLEWAREF--GATHTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHc--CCceEEcCCCcCHHHHHHHHhCCCCC
Confidence 34567888888 54 4566677777765 44 599999999999888652 22111222223333333333 2368
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+|| |+.-. ...++...+.++++|.+++.-
T Consensus 247 d~vi-d~~g~--~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 247 DVVI-DAVGR--PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CEEE-ECCCC--HHHHHHHHHHhccCCEEEEEC
Confidence 9876 54322 234566677788899887654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.25 Score=45.19 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=59.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-----------ccC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-----------HFR 110 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-----------l~~ 110 (211)
++|.=| | .||.+..+|..+...+-+|+++|.+++.++..+.. .+.+...+..+.+.+ ..+
T Consensus 4 ~kI~VI-G--lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g------~~~~~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 4 ETISVI-G--LGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRG------EIHIVEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred cEEEEE-C--cchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCC------CCCcCCCCHHHHHHHHhhcCceeeecccc
Confidence 456666 5 46666777776655578999999999987753211 111111122222110 012
Q ss_pred CccEEEEcCCcC----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 111 EADFVLIDCNLE----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 111 ~fD~VfiD~~~~----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..|+||+.-+.+ ......+.+.+.+++ |.++|......++
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~-g~iVI~~STv~pg 124 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK-GDLVILESTSPVG 124 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC-CCEEEEeCCCCCC
Confidence 579999876542 335567778888887 6777756566666
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.8 Score=41.01 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=65.0
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc----chHHHhhhc-cC
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG----DAQSLLLSH-FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g----da~e~l~~l-~~ 110 (211)
+..+...|.-+ | .|.|.+++.-|.... .+++++||++++..+.|++.=. ..+++. |..+.+..+ ++
T Consensus 182 ~v~~G~tvaV~-GlGgVGlaaI~gA~~ag--A~~IiAvD~~~~Kl~~A~~fGA-----T~~vn~~~~~~vv~~i~~~T~g 253 (366)
T COG1062 182 KVEPGDTVAVF-GLGGVGLAAIQGAKAAG--AGRIIAVDINPEKLELAKKFGA-----THFVNPKEVDDVVEAIVELTDG 253 (366)
T ss_pred cCCCCCeEEEE-eccHhHHHHHHHHHHcC--CceEEEEeCCHHHHHHHHhcCC-----ceeecchhhhhHHHHHHHhcCC
Confidence 45667778777 5 468999888887764 6899999999999999987532 223322 565665555 44
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..|.+|--.... +.+++.+..++++|..++.
T Consensus 254 G~d~~~e~~G~~---~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 254 GADYAFECVGNV---EVMRQALEATHRGGTSVII 284 (366)
T ss_pred CCCEEEEccCCH---HHHHHHHHHHhcCCeEEEE
Confidence 889987443322 2455555555567876664
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.2 Score=39.16 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc---chHHHhhhc--cCC
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG---DAQSLLLSH--FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~l--~~~ 111 (211)
..+.++||-. |+| .|..++.+|++. +.+|+.++.+++..+.|++ +. ....+..... +..+.+..+ ...
T Consensus 164 ~~~g~~VlV~-G~G~vG~~a~~~a~~~---G~~vi~~~~~~~~~~~~~~-~G-a~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 164 LKKGDLVIVI-GAGGVGGYMVQTAKAM---GAAVVAIDIDPEKLEMMKG-FG-ADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHH-hC-CceEecCccccHHHHHHHHHhhcccCC
Confidence 4557789888 653 477777777775 5689999999999888865 32 2111221111 222222222 234
Q ss_pred ccE---EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADF---VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~---VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|. +++|+.-. ...++.+.+.|+++|.+++.-
T Consensus 238 ~d~~~d~v~d~~g~--~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 238 LRSTGWKIFECSGS--KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCcCEEEECCCC--hHHHHHHHHHHhcCCeEEEEC
Confidence 552 45565432 235566667778899887654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.94 Score=41.22 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~Vfi 117 (211)
.++|+=+ |+ |..+..+++.+...+..|+.+|.+++..+.+++.. ..+.++.||+.+ .|.+. -..+|.|++
T Consensus 231 ~~~iiIi-G~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIV-GG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEE-CC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4667777 65 77777888888766789999999999888776643 246789999854 34332 357899987
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
-.+.....-....+.+.+.+.-.++.+
T Consensus 304 ~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 304 LTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 654432222223333444443333333
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.093 Score=40.48 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=26.7
Q ss_pred EEccccHH--HHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 46 VACANVAN--ATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 46 Ei~Gtg~G--~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
|| |+..| .++.+++.+....+++|+++|.+|...+..+++
T Consensus 1 Dv-GA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DV-GANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EE-S-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred Cc-ccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 78 99999 777776533223479999999999999988888
|
; PDB: 2PY6_A. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.1 Score=38.90 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=58.0
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ |+ +.|..++.+|++. +.+ |+.++.+++..+.+++. . ...-+.....+ .+.+..+ ...+
T Consensus 160 ~~~~g~~vlV~-G~G~vG~~~~~~ak~~---G~~~vi~~~~~~~~~~~~~~~-g-a~~~i~~~~~~-~~~~~~~~~~~~~ 232 (339)
T cd08239 160 GVSGRDTVLVV-GAGPVGLGALMLARAL---GAEDVIGVDPSPERLELAKAL-G-ADFVINSGQDD-VQEIRELTSGAGA 232 (339)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh-C-CCEEEcCCcch-HHHHHHHhCCCCC
Confidence 34567788888 54 5666666677665 456 99999999988888653 2 11112221222 2222222 2379
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+||-..... ..++...+.|+++|.+++.-
T Consensus 233 d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIECSGNT---AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 9887433322 33455566778889887643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.97 Score=39.69 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++||-+ |+ ++|..++.+++.+. .+.+|+.+|.+++..+.|++ +.. ...+ + +. .. ...+|+||
T Consensus 162 ~~g~~VlV~-G~G~vGl~~~~~a~~~~-g~~~vi~~~~~~~k~~~a~~-~~~----~~~~--~--~~-~~-~~g~d~vi- 227 (341)
T cd08237 162 KDRNVIGVW-GDGNLGYITALLLKQIY-PESKLVVFGKHQEKLDLFSF-ADE----TYLI--D--DI-PE-DLAVDHAF- 227 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHhc-CCCcEEEEeCcHhHHHHHhh-cCc----eeeh--h--hh-hh-ccCCcEEE-
Confidence 457889888 64 45555555565421 14589999999998888875 221 1111 1 11 11 22589887
Q ss_pred cCCcC-cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLE-NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~-~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.-. .....++...++|+++|.+++.-
T Consensus 228 D~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 44322 23456788888999999887654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.1 Score=39.23 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=60.3
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.++||-. |+ +.|..++.+|++. +. .|++++.+++..+.+++ +. ...-+.....+..++.... ...+|-
T Consensus 158 ~~~g~~vlV~-G~g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~~~~~-~G-a~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 158 GCEGKNVIII-GAGTIGLLAIQCAVAL---GAKSVTAIDINSEKLALAKS-LG-AMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH-cC-CceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456788888 54 4666667777765 44 47999999998888764 22 1111111112222222212 346886
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++|+.-. ...+....+.|+++|.+++.-
T Consensus 232 ~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAGV--PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 77776543 245677777888999887753
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.45 Score=41.84 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=61.0
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC---
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN--- 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~--- 120 (211)
|+|++ ||.|-.++-+-.+- --.+.++|+++...+..+.|+.. .++++|..++.......+|+++-..+
T Consensus 1 vidLF-~G~GG~~~Gl~~aG---~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLF-AGIGGIRLGFEQAG---FKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEe-cCccHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 58895 88888877776542 23467899999999999988752 44578887765432346898875421
Q ss_pred ------------cC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 ------------LE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ------------~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .+.++++.+. .++| . +++.+|+-
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~-~~~P-~-~~v~ENV~ 110 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILK-EKKP-K-FFLLENVK 110 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHh-hcCC-C-EEEeeccH
Confidence 11 1344555554 3677 3 66679974
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.21 Score=43.27 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 29 AEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 29 ~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
-+|+..++.. .+++.|||-+ +|+|.+++ .|..+ +-+.+++|++++..+.|++.+.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF-~GSGTT~~-AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPF-AGSFTTGA-VAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CCCcHHHH-HHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 3556665543 5688999996 99996544 44443 6789999999999999999986
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.56 Score=43.28 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCeEEEEcc-ccHHHHHHH--HHHHccCC-CcEEEEEeCChhHH---HHHHHHhcCCCCcEEEEE----cchHHHhhh--
Q 041509 41 AQLMVVACA-NVANATTLA--LAAAAHQT-GGRVVCILRRVEEY---KLSKKILGLDASHVEFVI----GDAQSLLLS-- 107 (211)
Q Consensus 41 ~~~VLEi~G-tg~G~stl~--la~a~~~~-~g~v~tiE~~~~~~---~~Ar~~~~~~~~~V~~~~----gda~e~l~~-- 107 (211)
|..|+=+ | +|+|-+|.. ||..+... +.+|.-|+.|.... +..+.+.+ ...|.++. .|+.++...
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~--~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGE--QIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHh--hcCCeEEecCCCCCHHHHHHHHH
Confidence 4455555 5 889988755 55544443 45676666664332 22222222 12244332 255444321
Q ss_pred ---ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 108 ---HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 108 ---l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
....||+|++|.+.+ ...+.+..+.+.+.|...++|+|..
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 145799999998754 2344556666777898888887753
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.3 Score=39.67 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=58.5
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
...+.++||-. |+ +.|..++.+|++. +. .|++++.+++..+.|++. +...-+.... .+..+.+.++ .+.
T Consensus 190 ~~~~g~~VlV~-G~G~vG~~~iqlak~~---G~~~vi~~~~~~~~~~~a~~l--Ga~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSVVIF-GLGTVGLSVAQGAKLR---GASQIIGVDINPEKAEKAKTF--GVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHHc--CCcEEEcccccchHHHHHHHHHhCCC
Confidence 34567888888 54 5666667777765 44 689999999988888652 2211122111 1333333333 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
+|+||=-.... ..+..+.+.++++ |.+++.
T Consensus 264 ~d~vid~~G~~---~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSFECVGDT---GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEEECCCCh---HHHHHHHHhhccCCCEEEEE
Confidence 99887333321 3456667777887 777653
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.9 Score=37.70 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=57.4
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-. | .+.|..++.+|++. +.+|++++.+++..+.|++. . . +.+ +. ..+. ..+.+|.+
T Consensus 162 ~~~~g~~VlV~-G~g~iG~~a~~~a~~~---G~~vi~~~~~~~~~~~a~~~-G-a-~~v--i~--~~~~---~~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLY-GFGGSAHLTAQVALAQ---GATVHVMTRGAAARRLALAL-G-A-ASA--GG--AYDT---PPEPLDAA 227 (329)
T ss_pred CCCCCCEEEEE-cCCHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHh-C-C-cee--cc--cccc---CcccceEE
Confidence 34567788888 6 44666666667664 56899999999988888763 2 1 111 11 0010 12458876
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+...... ..++...+.|+++|.+++.-
T Consensus 228 i~~~~~~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPAG---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCcH---HHHHHHHHhhCCCcEEEEEe
Confidence 6433222 46777888899999887754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.31 E-value=2 Score=37.54 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=60.8
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
+...+.++||-. |+ ++|..++.+|++.. ...+++++.+++..+.+++ +. ...-+.....+..+.+..+ ...+
T Consensus 162 ~~~~~g~~vlI~-g~g~iG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~~-~g-~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 162 ANIKLGDTVAVF-GIGPVGLMAVAGARLRG--AGRIIAVGSRPNRVELAKE-YG-ATDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH-cC-CceEecCCCCCHHHHHHHHhCCCCC
Confidence 334567788888 54 47777777887752 2469999999988888875 22 2111222122322222222 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+++-..... ..+..+.+.|+++|.++..
T Consensus 237 d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGGGQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 9887433322 4567777778888887654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.25 Score=41.99 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC---CCc----EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH------HHhhh
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ---TGG----RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ------SLLLS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~---~~g----~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~------e~l~~ 107 (211)
.++++|+| ...|..+-.|++.+-. +.+ +|++||+.|- .. -.-|.-+.||+. .++.-
T Consensus 42 v~rvVDLC-AAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------aP-I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLC-AAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------AP-IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhh-cCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------Cc-cCceEEeecccCCHhHHHHHHHH
Confidence 57899997 9999999999988754 122 3999998762 21 234666677643 33433
Q ss_pred c-cCCccEEEEcCCcC--------cH------HHHHHHHHhcCCCCcEEE
Q 041509 108 H-FREADFVLIDCNLE--------NH------EGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~--------~y------~~~l~~~~~~L~pgG~vi 142 (211)
+ .++.|+|+.|+... +| ...+......|+|||.++
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 3 45899999998643 23 223333345599988765
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.2 Score=36.02 Aligned_cols=97 Identities=22% Similarity=0.162 Sum_probs=62.2
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+++.||-. | +++|..++.+|++. +.+|+++..+++..+.+++ + +. +.+-....+..+.+..+...+|++
T Consensus 140 ~~~g~~vlV~-ga~g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~-~~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 140 LQPGDTLLIR-GGTSSVGLAALKLAKAL---GATVTATTRSPERAALLKE-L-GA-DEVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred CCCCCEEEEE-cCCChHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHh-c-CC-cEEEecCccHHHHHHHhCCCceEE
Confidence 4566788877 6 57888888888875 6789999999888777753 2 22 222111223333333334579988
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+... ..++.+.+.|+++|.++.+.
T Consensus 213 l-~~~~~---~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 213 L-ELVGT---ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred E-ECCCh---HHHHHHHHHhccCCEEEEEc
Confidence 7 54332 35677778888889877654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.6 Score=38.09 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=60.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-READ 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~fD 113 (211)
...++++||=..+.++|..++.+|++. +. +|+.++.+++..+.+++. +...-+.....+..+.+.++ . +.+|
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~~~~~~~~~~~~--ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA---GASKIIVSEPSEARRELAEEL--GATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh--CCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 345567787772245677777777765 44 899999999988888653 22111222233333333322 2 3599
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++--.... ..++.+.+.|+++|.++.+-
T Consensus 244 ~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGVQ---ATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCCH---HHHHHHHHhccCCCEEEEEc
Confidence 987543322 35677777888888877644
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.5 Score=39.04 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=59.1
Q ss_pred HhhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cC
Q 041509 36 AAGNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~ 110 (211)
+...+.++||-+ | .+.|..++.+|++. +. +|++++.+++..+.|++. +....+.... .+..+.+..+ .+
T Consensus 194 ~~~~~g~~VlV~-G~G~vG~~a~q~ak~~---G~~~Vi~~~~~~~r~~~a~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 194 ANVQAGSSVAIF-GLGAVGLAVAEGARAR---GASKIIGVDINPEKFEKGKEM--GITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCCcEEEEcCChHHHHHHHHc--CCcEEEecccccchHHHHHHHHhCC
Confidence 345567788888 5 44666666777764 45 799999999999988652 2211122111 1233333333 23
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
.+|+||=-.... ..++.....++++ |.+++.-
T Consensus 268 g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEc
Confidence 799876433322 3455666667776 7766543
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.38 Score=40.78 Aligned_cols=47 Identities=9% Similarity=-0.135 Sum_probs=38.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC------CcEEEEEeCChhHHHHHHHHhc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT------GGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~------~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
+-+|+|+ |.|.|..+.-+...+... .-+++-||.+|.+.+..++.+.
T Consensus 19 ~~~ivE~-GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEI-GAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEE-S-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEE-CCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3579999 999999999999988753 2489999999999999999987
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.2 Score=36.81 Aligned_cols=87 Identities=21% Similarity=0.095 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEEEEcCCcCcHHHH
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFVLIDCNLENHEGV 127 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD~~~~~y~~~ 127 (211)
.++|..++.+|++. +.+|++++.+++..+.+++. +...-+.....+..+.+.++ ...+|++| |+--. ..
T Consensus 154 g~vG~~a~q~a~~~---G~~vi~~~~~~~~~~~~~~~--g~~~~i~~~~~~~~~~v~~~~~~~~~d~vi-d~~g~---~~ 224 (324)
T cd08291 154 SALGRMLVRLCKAD---GIKVINIVRRKEQVDLLKKI--GAEYVLNSSDPDFLEDLKELIAKLNATIFF-DAVGG---GL 224 (324)
T ss_pred cHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc--CCcEEEECCCccHHHHHHHHhCCCCCcEEE-ECCCc---HH
Confidence 66777777788775 67899999999988888762 21111222222333333322 24689887 54322 22
Q ss_pred HHHHHhcCCCCcEEEEEe
Q 041509 128 LRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 128 l~~~~~~L~pgG~viv~d 145 (211)
.....+.|+++|.++.+-
T Consensus 225 ~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 225 TGQILLAMPYGSTLYVYG 242 (324)
T ss_pred HHHHHHhhCCCCEEEEEE
Confidence 344566678889877653
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.7 Score=37.58 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=60.1
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
...+.++||-. |+| +|..++.+|++.. ..++++++.+++..+.+++. +....+.....+..+.+..+ .+.+|
T Consensus 164 ~~~~~~~VlI~-g~g~vg~~~iqlak~~g--~~~v~~~~~~~~~~~~~~~~--g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVI-GAGPVGLCAVAGARLLG--AARIIAVDSNPERLDLAKEA--GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHh--CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 34556788777 554 6888888888752 24899999888887777653 11111222222333333322 35799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++| |+... ...++...+.|+++|.++.+
T Consensus 239 ~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVI-EAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEE-EccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 887 44322 13566777778888887654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.3 Score=39.95 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=58.5
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
++.+|+-+ |+| +|..++..+.++ +.+|+.+|.+++..+.+...+. ..+.....+..++ ...-..+|+|+..
T Consensus 166 ~~~~VlVi-GaG~vG~~aa~~a~~l---Ga~V~v~d~~~~~~~~l~~~~g---~~v~~~~~~~~~l-~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTII-GGGVVGTNAAKMANGL---GATVTILDINIDRLRQLDAEFG---GRIHTRYSNAYEI-EDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEE-cCCHHHHHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcC---ceeEeccCCHHHH-HHHHccCCEEEEc
Confidence 56779999 776 666666666655 5689999999987766655443 1232222232222 2223578999976
Q ss_pred CC---cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 119 CN---LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 119 ~~---~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.. .....=..+.....++|++ +++ |-...+|
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~-vIv-Dva~d~G 271 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGA-VIV-DVAIDQG 271 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCC-EEE-EEecCCC
Confidence 41 1111112244555678754 444 6455544
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.79 E-value=2.7 Score=36.36 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=63.2
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
....+.++||-. |+| .|..++.+|++. +.+|+++..+++..+.+++. . ...-+.....+..+.+.++ ...+
T Consensus 155 ~~l~~g~~vLI~-g~g~vG~~a~~lA~~~---g~~v~~~~~s~~~~~~~~~~-g-~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 155 AGVTAGDTVLVV-GAGPIGLGVIQVAKAR---GARVIVVDIDDERLEFAREL-G-ADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEECCCHHHHHHHHHh-C-CCEEecCcccCHHHHHHHHhCCCCC
Confidence 344567789988 665 588888888875 67899999888888877542 2 1122222233333333322 3469
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|++|-.... ...+..+.+.|+++|.++...
T Consensus 229 d~vld~~g~---~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATGN---PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 999754322 234666677778888877543
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.3 Score=37.67 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=59.2
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
...+.++||-. |+ ++|..++.+|++. +. +|++++.+++..+.|++. . ...-+.... .+..+.+.++ .+.
T Consensus 182 ~~~~g~~VlV~-G~G~iG~~a~q~Ak~~---G~~~Vi~~~~~~~~~~~a~~~-G-a~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 182 KVEEGDTVAVF-GLGGIGLSVIQGARMA---KASRIIAIDINPAKFELAKKL-G-ATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHh-C-CCeEEcccccchhHHHHHHHHhCCC
Confidence 34567888888 54 5677777777765 45 799999999998888653 2 111122111 1122323222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|++|-.... ...+..+.+.++++ |.+++.-
T Consensus 256 ~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 256 VDYSFECIGN---VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEe
Confidence 8988733222 23466666777776 7776544
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.2 Score=38.33 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=57.3
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCChhH---HHHHHHHhcCCCCcEEEEEc----chHHH----hhh
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRRVEE---YKLSKKILGLDASHVEFVIG----DAQSL----LLS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~---~~~Ar~~~~~~~~~V~~~~g----da~e~----l~~ 107 (211)
++.++=++-+|+|-+|.. ||..+...+.+|.-+|.|+-. .+..+.+.+. ..+.++.. |..+. +..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~--~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKR--LGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHh--CCeEEEeCCCCCCHHHHHHHHHHH
Confidence 344555523889998765 565555546688888877532 2233333331 12444432 22222 221
Q ss_pred -ccCCccEEEEcCCcCcH-----HHHHHHHHhcCC------CCcEEEEEecC
Q 041509 108 -HFREADFVLIDCNLENH-----EGVLRAVQAGNK------PNGAVVVGYNA 147 (211)
Q Consensus 108 -l~~~fD~VfiD~~~~~y-----~~~l~~~~~~L~------pgG~viv~dn~ 147 (211)
..+.||+|++|.....+ .+.++.+.+... |.+.++|.+-.
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 14679999999876532 233444444444 67888877753
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.9 Score=30.48 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=59.2
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEE-EEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVV-CILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~-tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+|.=| |+|........+.....++.+++ .+|.+++..+.+.+.+. +. ...|..+++.. ..+|+|++..+.
T Consensus 2 ~v~ii-G~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~-----~~-~~~~~~~ll~~--~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGII-GAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG-----IP-VYTDLEELLAD--EDVDAVIIATPP 72 (120)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT-----SE-EESSHHHHHHH--TTESEEEEESSG
T ss_pred EEEEE-CCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc-----cc-chhHHHHHHHh--hcCCEEEEecCC
Confidence 46677 88665332222222111356665 57899988777655544 22 67778887763 589999999988
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
....++...+.+ .|.-++++=.+
T Consensus 73 ~~h~~~~~~~l~----~g~~v~~EKP~ 95 (120)
T PF01408_consen 73 SSHAEIAKKALE----AGKHVLVEKPL 95 (120)
T ss_dssp GGHHHHHHHHHH----TTSEEEEESSS
T ss_pred cchHHHHHHHHH----cCCEEEEEcCC
Confidence 877777777775 35556657444
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.7 Score=37.20 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=60.6
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEc--chHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIG--DAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g--da~e~l~~l-~~~ 111 (211)
...+.++||-. | .+.|..++.+|++. +. +|++++.+++..+.+++ +. ...-+..... +..+.+.++ .+.
T Consensus 183 ~~~~g~~VlV~-G~G~vG~~a~~~ak~~---G~~~vi~~~~~~~~~~~~~~-lG-a~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 183 KVEPGSTVAVF-GLGAVGLAVIQGAKAA---GASRIIGIDINPDKFELAKK-FG-ATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH-cC-CCEEEcccccchHHHHHHHHHhCCC
Confidence 34567888888 5 45677777777765 45 79999999999888864 22 2111221111 233333333 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|+||--... ...++.+.+.|+++ |.++..-
T Consensus 257 ~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 257 VDYTFECIGN---VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CcEEEECCCC---hHHHHHHHHhhccCCCeEEEEc
Confidence 9988733222 24566677778776 7777654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.42 Score=43.43 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
.++++.+....+.+.|+|+ |.|.||.+-.|+-.. +-.|++||-+....+.|++
T Consensus 142 selvSsi~~f~gi~~vvD~-GaG~G~LSr~lSl~y---~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDV-GAGQGHLSRFLSLGY---GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEc-CCCchHHHHHHhhcc---CceEEEeccchHHHHHHHH
Confidence 5677788777888999999 999999999998654 6799999999777666653
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.54 Score=39.82 Aligned_cols=71 Identities=27% Similarity=0.223 Sum_probs=43.0
Q ss_pred cHHHHHH--HHHHHccCCCcEEEEEeCChhH--HHHHHHHhc--CCCCcEEEEEcchHHHhhhc-----cCCccEEEEcC
Q 041509 51 VANATTL--ALAAAAHQTGGRVVCILRRVEE--YKLSKKILG--LDASHVEFVIGDAQSLLLSH-----FREADFVLIDC 119 (211)
Q Consensus 51 g~G~stl--~la~a~~~~~g~v~tiE~~~~~--~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-----~~~fD~VfiD~ 119 (211)
|.|-+|. .||.++...+++|+-||-||.. .+.++...+ ...+++++..++-...+... ...||+|++|.
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl 91 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL 91 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence 4555554 4666665568999999999874 444332222 23556777666533333221 24699999996
Q ss_pred Cc
Q 041509 120 NL 121 (211)
Q Consensus 120 ~~ 121 (211)
..
T Consensus 92 eG 93 (231)
T PF07015_consen 92 EG 93 (231)
T ss_pred CC
Confidence 43
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=3.6 Score=35.45 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=63.6
Q ss_pred HhhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD 113 (211)
+...++++||-. | .+.|..++.+|... .+.+|++++.+++..+.+++ +. ...-+.... .+..+.+..+.+.+|
T Consensus 158 ~~~~~g~~vlV~-g~g~vG~~~~~la~~~--~g~~v~~~~~~~~~~~~~~~-~g-~~~v~~~~~~~~~~~~v~~~~~~~d 232 (338)
T PRK09422 158 SGIKPGQWIAIY-GAGGLGNLALQYAKNV--FNAKVIAVDINDDKLALAKE-VG-ADLTINSKRVEDVAKIIQEKTGGAH 232 (338)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHh--CCCeEEEEeCChHHHHHHHH-cC-CcEEecccccccHHHHHHHhcCCCc
Confidence 444567788777 5 34677777777653 26789999999999888854 32 211111111 222233333334689
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++++.... ..++.+.+.|+++|.++.+.
T Consensus 233 ~vi~~~~~~---~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 233 AAVVTAVAK---AAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEEeCCCH---HHHHHHHHhccCCCEEEEEe
Confidence 888886533 55777788888899887654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.75 Score=42.01 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh------c--------cCCccEE
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS------H--------FREADFV 115 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~------l--------~~~fD~V 115 (211)
-|.||.++.+|.+....+-+|+++|+|+...+...+ ....+..=+-.+.+.. + ...-|++
T Consensus 15 iGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~------G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 15 IGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR------GESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred EccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC------CcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 468899999988887767899999999987765432 2222223332322211 1 1256777
Q ss_pred EEcCC----------cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 116 LIDCN----------LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 116 fiD~~----------~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
++.-+ .+...+..+.+.+.|++ |-++|.....++|
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k-G~LVIlEST~~PG 133 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKK-GDLVILESTTPPG 133 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCC-CCEEEEecCCCCC
Confidence 66421 11236778888999997 6677778888887
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.2 Score=42.16 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
..|-.+.|-| ||.||.---+..--+..=..|++-|+|+++++.|++|+.
T Consensus 50 ~~p~tLyDPC-CG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPC-CGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT--TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccC-CCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3456789997 999997554443322223789999999999999999974
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.3 Score=40.92 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=57.0
Q ss_pred CCeEEEEccccHHHHHHH--HHHHcc-CCCcEEEEEeCChh---HHHHHHHHhcCCCCcEEEEE----cchHHHh----h
Q 041509 41 AQLMVVACANVANATTLA--LAAAAH-QTGGRVVCILRRVE---EYKLSKKILGLDASHVEFVI----GDAQSLL----L 106 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~-~~~g~v~tiE~~~~---~~~~Ar~~~~~~~~~V~~~~----gda~e~l----~ 106 (211)
|..++=++-+|+|-+|.. ||..+. ..+.+|.-|+.|.. +.+..+..... ..+.+.. .++.++. .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~--~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQ--VGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHh--cCCceEecCCCCCHHHHHHHHHH
Confidence 344555522899998775 454442 23556766666643 23322222221 1122221 2333332 2
Q ss_pred hc-cCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 107 SH-FREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l-~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.. ...||+|++|.+.. ...+.+..+.+.+.|.+.++|.|..
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~ 223 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM 223 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 11 46799999998764 2344555566677888888888754
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.4 Score=38.16 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=54.8
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++||-+ | .++|..++.+|++.. ...|+++|.+++.++.|+.. . ++ |..+. ....+|+||
T Consensus 143 ~~~~~vlV~-G~G~vG~~a~q~ak~~G--~~~v~~~~~~~~rl~~a~~~-~-------~i--~~~~~---~~~g~Dvvi- 205 (308)
T TIGR01202 143 VKVLPDLIV-GHGTLGRLLARLTKAAG--GSPPAVWETNPRRRDGATGY-E-------VL--DPEKD---PRRDYRAIY- 205 (308)
T ss_pred cCCCcEEEE-CCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHhhhhc-c-------cc--Chhhc---cCCCCCEEE-
Confidence 356678888 5 457888888887752 23477889998877766542 1 01 11110 134689887
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.-. ...++.+.+.|+++|.++++-
T Consensus 206 d~~G~--~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD--PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC--HHHHHHHHHhhhcCcEEEEEe
Confidence 44322 235677788889999887643
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.47 Score=39.84 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 30 EFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 30 ~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
+++..++. ..+++.|||-+ +|+|.++++.. .+ +-+.+++|++++..+.|.+.++
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf-~Gsgtt~~aa~-~~---~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPF-AGSGSTCVAAL-QS---GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCC-CCCCHHHHHHH-Hc---CCCEEEEecCHHHHHHHHHHHH
Confidence 44554443 35778899995 89997655433 33 5689999999999999998886
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.76 Score=39.50 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=56.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH-hc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI-LG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~-~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|+=+ |+|.- +..+|..+...+-.|+.++. ++..+..+++ +. .......+ ......-.....+.+|+||+-.
T Consensus 2 kI~Ii-G~G~i--G~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 2 RIAVV-GAGAV--GGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred eEEEE-CCCHH--HHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEEe
Confidence 46667 66543 33444444333567999998 6665554432 11 11111111 1111111111236899999998
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
......+.++.+.+.+.++..++..-|-+.
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 877788899999888877555555567554
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.3 Score=36.54 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=58.3
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
+...+.++||-..+.+.|..++.+|++. +. +|++++.+++..+.|++ +. ...-+.... .+..+.+.++ .+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~~~~~~~~~~~~-~G-a~~~i~~~~~~~~~~~~v~~~~~~~ 257 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR---GASRIIGVDLNPSKFEQAKK-FG-VTEFVNPKDHDKPVQEVIAEMTGGG 257 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH-cC-CceEEcccccchhHHHHHHHHhCCC
Confidence 4455678888882245666666677765 44 89999999999888865 22 211122111 1122333322 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|++| |+--. ...+..+.+.++++ |.+++.-
T Consensus 258 ~d~vi-d~~G~--~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 258 VDYSF-ECTGN--IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCEEE-ECCCC--hHHHHHHHHHhhcCCCEEEEEC
Confidence 89665 44321 23455566677785 7776544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.3 Score=37.93 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=59.6
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC---CCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD---ASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~---~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|.=+ |+| ..+..+|..+...+.+|+.++.+++..+..+++ +. ........ ...+-.... +++|+||+-.
T Consensus 2 ~I~Ii-G~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~--g~~~~~~~~~~~~-~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 2 KIAIL-GAG--AIGGLFGAALAQAGHDVTLVARRGAHLDALNEN--GLRLEDGEITVPV-LAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred EEEEE-CCC--HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc--CCcccCCceeecc-cCCCChhHc-CCCCEEEEec
Confidence 46667 664 444455554444456899999988776655542 21 11111000 011111222 6899999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
........++.+.+.+.++..++...|-+.
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 777778899999988877556666667553
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.82 E-value=3.9 Score=35.57 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=58.7
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcc----hHHHhhhc-
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGD----AQSLLLSH- 108 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd----a~e~l~~l- 108 (211)
+...+.++||-. |+ +.|..++.+|++. +.+ |+.++.+++..+.+++ +. ...-+.....+ +.++....
T Consensus 158 ~~~~~g~~vlI~-g~g~vG~~a~~lak~~---G~~~v~~~~~~~~~~~~~~~-~g-~~~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 158 AGVRPGDTVLVF-GAGPIGLLTAAVAKAF---GATKVVVTDIDPSRLEFAKE-LG-ATHTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHH-cC-CcEEeccccccchhHHHHHHHHhC
Confidence 344567787777 54 4588888888875 455 8999998888877755 22 11111111122 22222212
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|+||-..... ..++...+.|+++|.++.+
T Consensus 232 ~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 34699887543321 2456667777888887754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.49 Score=40.36 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=45.6
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..+|+++|.+++.++.|++. |..+. ...+ .+.+ ..+|+|++..+.....++++++.+.+++ |.+++ |-
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~--g~~~~---~~~~-~~~~----~~~DlvvlavP~~~~~~~l~~~~~~~~~-~~iv~-Dv 78 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALEL--GIIDE---ASTD-IEAV----EDADLVVLAVPVSAIEDVLEEIAPYLKP-GAIVT-DV 78 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHT--TSSSE---EESH-HHHG----GCCSEEEE-S-HHHHHHHHHHHHCGS-T-TSEEE-E-
T ss_pred CeEEEEEeCCHHHHHHHHHC--CCeee---ccCC-HhHh----cCCCEEEEcCCHHHHHHHHHHhhhhcCC-CcEEE-Ee
Confidence 47999999999998888643 22222 1222 3332 4579999999998999999999998887 55554 63
Q ss_pred CCCC
Q 041509 147 AFRK 150 (211)
Q Consensus 147 ~~~~ 150 (211)
...+
T Consensus 79 ~SvK 82 (258)
T PF02153_consen 79 GSVK 82 (258)
T ss_dssp -S-C
T ss_pred CCCC
Confidence 3333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.85 Score=39.17 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=56.4
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCc
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLEN 123 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~ 123 (211)
|.=| |+ |..+..++.++...+.+|+.+|.+++..+.+.+. +. +.....+. +. -...|+||+..+...
T Consensus 3 I~II-G~--G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~--g~---~~~~~~~~-~~----~~~aDlVilavp~~~ 69 (279)
T PRK07417 3 IGIV-GL--GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER--GL---VDEASTDL-SL----LKDCDLVILALPIGL 69 (279)
T ss_pred EEEE-ee--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC--CC---cccccCCH-hH----hcCCCEEEEcCCHHH
Confidence 4555 54 5555666666654466899999999888777542 21 11111222 22 246799999988777
Q ss_pred HHHHHHHHHhcCCCCcEEEEEec
Q 041509 124 HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 124 y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..+.++.+.+.+++ +.++ .|.
T Consensus 70 ~~~~~~~l~~~l~~-~~ii-~d~ 90 (279)
T PRK07417 70 LLPPSEQLIPALPP-EAIV-TDV 90 (279)
T ss_pred HHHHHHHHHHhCCC-CcEE-EeC
Confidence 77888888888876 5554 454
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=91.63 E-value=3.7 Score=34.29 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=60.8
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.+.||=. | .+.|..++.++.+. +.+|+.++.+++..+.+++ +. ...-+.-...+..+.+..+ ...
T Consensus 132 ~~~~~g~~vlI~-g~~g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ 205 (320)
T cd05286 132 YPVKPGDTVLVH-AAAGGVGLLLTQWAKAL---GATVIGTVSSEEKAELARA-AG-ADHVINYRDEDFVERVREITGGRG 205 (320)
T ss_pred cCCCCCCEEEEE-cCCchHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH-CC-CCEEEeCCchhHHHHHHHHcCCCC
Confidence 445567788877 6 46888888888775 6789999999888877754 22 2111111111222223222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+... .....+.+.|+++|.++.+.
T Consensus 206 ~d~vl-~~~~~---~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 206 VDVVY-DGVGK---DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred eeEEE-ECCCc---HhHHHHHHhhccCcEEEEEe
Confidence 99988 43322 34566677788888877554
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.49 E-value=2.7 Score=38.20 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=59.6
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~ 119 (211)
+|+-+ |+ |..+..++..+...+..|+.+|.+++..+.+++. ..++++.||+.+ .+... -..+|.|++..
T Consensus 2 ~viIi-G~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 2 KIIIV-GA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred EEEEE-CC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 45555 54 8888889988876577999999999987776642 237888898854 33433 45799998876
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+............+.+.|.-.+++
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEE
Confidence 544333333333333433333333
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.48 E-value=5.5 Score=34.45 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCChhHHHHHHHH----HhhCCCCeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhc-C-CCCcE
Q 041509 23 AKEPNEAEFISAL----AAGNNAQLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILG-L-DASHV 94 (211)
Q Consensus 23 ~~~~~~~~lL~~l----~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~-~-~~~~V 94 (211)
...+-.+.+|... +....+...+|+ |+|.---|-.|..++.+.+ .+.+.||++...++--.+.+. . ..-.|
T Consensus 57 YpTRtEaaIl~~~a~Eia~~~g~~~lveL-GsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v 135 (321)
T COG4301 57 YPTRTEAAILQARAAEIASITGACTLVEL-GSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEV 135 (321)
T ss_pred cCchhHHHHHHHHHHHHHHhhCcceEEEe-cCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeE
Confidence 3455556666544 445678999999 9998888888888886533 578999999987765444443 2 23357
Q ss_pred EEEEcchHHHhhhcc--CCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 95 EFVIGDAQSLLLSHF--READFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 95 ~~~~gda~e~l~~l~--~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.-++||....|..+. ++==++|+....++ -..++.++...|+||..+++.-+...
T Consensus 136 ~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 136 NALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred eehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 788999888776553 33345666654443 36688888889999998887655443
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=91.36 E-value=4.9 Score=34.18 Aligned_cols=100 Identities=17% Similarity=0.009 Sum_probs=57.5
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
+...+...||=. | .+.|..++.+|++. +.+++.+..+++..+.+++ + +...-+.....+..+.+.++ ...
T Consensus 135 ~~~~~g~~vlI~-g~~g~ig~~~~~~a~~~---G~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 135 LGVKPGQWLIQN-AAGGAVGKLVAMLAAAR---GINVINLVRRDAGVAELRA-L-GIGPVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred hCCCCCCEEEEc-ccccHHHHHHHHHHHHC---CCeEEEEecCHHHHHHHHh-c-CCCEEEcCCCchHHHHHHHHhCCCC
Confidence 344566777776 4 45888888888876 5677777666666665554 2 32111111111222222222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+|| |+... .....+.+.|+++|.++.+-
T Consensus 209 ~d~v~-d~~g~---~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 209 ISVAL-DSVGG---KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CcEEE-ECCCC---hhHHHHHHhhcCCcEEEEEe
Confidence 99988 54322 23456677788889887653
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.6 Score=35.16 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=60.8
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.+.||=. | .++|..++.+|++. +.+|+.++.+++..+.+++.+. ....+.....+..+.+..+ .+.+|.
T Consensus 143 ~~~~~~vlI~-g~~g~ig~~~~~~a~~~---G~~vi~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 143 PKPGETVVVS-AAAGAVGSVVGQIAKLL---GARVVGIAGSDEKCRWLVEELG-FDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCCEEEEe-cCcchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhhcC-CceEEecCChhHHHHHHHhccCCceE
Confidence 3455778777 6 46787777788774 6789999999988887766433 1111222112222222222 357998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++ |+... ..++.+.+.|+++|.++.+-
T Consensus 218 vi-~~~g~---~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YF-DNVGG---EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EE-EcchH---HHHHHHHHhcCCCceEEEEe
Confidence 87 54322 35677777888888877543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.43 Score=44.98 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=64.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHH-HhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKK-ILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~-~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
...|.-+ |.|-|-..-+..+++... .-++++||.||.++..-+. |++.-.++|+++.+|-.+.-+. .++.|+++.
T Consensus 368 ~tVimvl-GaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVL-GAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred eEEEEEe-cCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence 3446677 999998766655554432 3568999999998765543 3335578999999998776532 467888864
Q ss_pred c-----CCcCcHHHHHHHHHhcCCCCc
Q 041509 118 D-----CNLENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 118 D-----~~~~~y~~~l~~~~~~L~pgG 139 (211)
. ++-+.-.+.++-+...|+|.|
T Consensus 446 ELLGSFGDNELSPECLDG~q~fLkpdg 472 (649)
T KOG0822|consen 446 ELLGSFGDNELSPECLDGAQKFLKPDG 472 (649)
T ss_pred HhhccccCccCCHHHHHHHHhhcCCCc
Confidence 3 233334666777777777754
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.04 E-value=6.6 Score=34.03 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=58.1
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
.+.++||-. |+ ++|..++.+|++. +.+ |+.++.+++..+.+++. +...-+.....+..+.+..+ .+.+|+
T Consensus 160 ~~g~~vlI~-~~g~vg~~a~~la~~~---G~~~v~~~~~~~~~~~~~~~~--g~~~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 160 ISGKSVLVT-GAGPIGLMAIAVAKAS---GAYPVIVSDPNEYRLELAKKM--GATYVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh--CCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence 455666556 44 4777777788775 454 88888888777776542 22111222233443433333 357999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++-..... ..+..+.+.|+++|.++...
T Consensus 234 vld~~g~~---~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSGAP---KALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCCCH---HHHHHHHHhhcCCCEEEEEc
Confidence 87542322 34666777788888877653
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.8 Score=36.91 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
.+.++||-. |+ +.|..++.+|++. +.+ +++++.+++..+.+++ +. ...-+.....+..+.+..+ ...+|+
T Consensus 186 ~~g~~VlI~-g~g~vG~~~~~lak~~---G~~~vi~~~~s~~~~~~~~~-~g-~~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 186 RPGETVAVI-GVGGVGSSAIQLAKAF---GASPIIAVDVRDEKLAKAKE-LG-ATHTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCCEEEEE-CCcHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH-hC-CceEecCCcccHHHHHHHHhCCCCCCE
Confidence 456778766 54 4788888888775 445 9999999888777754 22 1111111122222222222 357999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+ |+-... ...+.+.+.|+++|.++...
T Consensus 260 vl-d~vg~~--~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VV-EALGKP--ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EE-EeCCCH--HHHHHHHHHHhcCCEEEEEc
Confidence 88 543331 25666777888899887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.94 Score=37.59 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhhcCCcC------CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH
Q 041509 6 AENATKAYLKTLKMGQKA------KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 6 ~~~~~~ay~~~~~~~~~~------~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~ 79 (211)
|++.+.....++....+. +.....+-+........+++||-+ |.. ..+.+.|+.+.+ ..+||-+|++|.+
T Consensus 4 pe~GITe~vkT~~s~~~v~Dvv~eI~~~K~~ai~~~~~~~E~~~vli~-G~Y--ltG~~~a~~Ls~-~~~vtv~Di~p~~ 79 (254)
T COG4017 4 PEYGITEMVKTIDSKTRVVDVVNEIAKKKYQAIRDFLEGEEFKEVLIF-GVY--LTGNYTAQMLSK-ADKVTVVDIHPFM 79 (254)
T ss_pred CCccHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhhhhcccCcceEEEE-Eee--ehhHHHHHHhcc-cceEEEecCCHHH
Confidence 677777777776654332 333334444444456678999999 763 123556766654 7899999999966
Q ss_pred HHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 80 YKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 80 ~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
-... ..+|+|..+ +..+.+.+|+|+=-.... --++. ++.+.| +.++| .|
T Consensus 80 r~~l-------p~~v~Fr~~-----~~~~~G~~DlivDlTGlGG~~Pe~----L~~fnp-~vfiV-Ed 129 (254)
T COG4017 80 RGFL-------PNNVKFRNL-----LKFIRGEVDLIVDLTGLGGIEPEF----LAKFNP-KVFIV-ED 129 (254)
T ss_pred HhcC-------CCCccHhhh-----cCCCCCceeEEEeccccCCCCHHH----HhccCC-ceEEE-EC
Confidence 4322 344666555 343578999987322222 11233 344566 66666 54
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.42 Score=41.03 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=56.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-C--------CcEEEEEcchHHH
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-A--------SHVEFVIGDAQSL 104 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~--------~~V~~~~gda~e~ 104 (211)
+|-=| |+ |+.+..+|..+...+-+|+.+|.+++.++.+++.++ +. . .++++ ..|..+
T Consensus 5 kI~VI-G~--G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 5 KIGVI-GA--GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred EEEEE-cc--CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 46666 65 455555555554445689999999999876654332 21 1 13332 233221
Q ss_pred hhhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 105 LLSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.+..|+|++..... ...+.++.+.+.++| +.++. .|.
T Consensus 80 ----~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~-~~il~-s~t 118 (282)
T PRK05808 80 ----LKDADLVIEAATENMDLKKKIFAQLDEIAKP-EAILA-TNT 118 (282)
T ss_pred ----hccCCeeeecccccHHHHHHHHHHHHhhCCC-CcEEE-ECC
Confidence 24679999887543 236889999888887 56654 443
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.80 E-value=5.7 Score=35.02 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=57.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.++||-....++|..++.+|++. +.+++.++.+++..+.+.+.+. . +.+ +...+. +.+..+...+|++|-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~~~~~~~~~~~~~G-a-~~~-i~~~~~-~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM---GHHVTVISSSDKKREEALEHLG-A-DDY-LVSSDA-AEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHhcC-C-cEE-ecCCCh-HHHHHhcCCCcEEEEC
Confidence 3567787772256777777788775 5678888888876666554333 1 211 111222 2222233468988733
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ...++.+.+.|+++|.++...
T Consensus 252 ~g~---~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VPV---FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCc---hHHHHHHHHHhccCCEEEEEC
Confidence 322 235666777888999887754
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.8 Score=38.24 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCChhHH---HHHHHHhcCCCCcEEEEEc----chH----HHhh-
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRRVEEY---KLSKKILGLDASHVEFVIG----DAQ----SLLL- 106 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~~---~~Ar~~~~~~~~~V~~~~g----da~----e~l~- 106 (211)
+..++=++-+|+|-+|.. ||..+...+++|.-++.|.... +..+.+.. ...+.++.. |+. +.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~--~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE--RVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHH--HcCceEEEeCCCCCHHHHHHHHHHH
Confidence 445555522899999876 5555555567888888776322 23322222 112444332 221 2221
Q ss_pred hccCCccEEEEcCCcCcH-----HHHHHHHHhc------CCCCcEEEEEecC
Q 041509 107 SHFREADFVLIDCNLENH-----EGVLRAVQAG------NKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~~y-----~~~l~~~~~~------L~pgG~viv~dn~ 147 (211)
.....||+|++|.+.... .+.++.+.+. ..|.+.++|.|-.
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 125789999999865422 2334444332 2366667776644
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=3.1 Score=37.16 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=56.6
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCC---hhHHHHHHHHhcCCCCcEEEEE----cchHHHh----hh
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRR---VEEYKLSKKILGLDASHVEFVI----GDAQSLL----LS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~---~~~~~~Ar~~~~~~~~~V~~~~----gda~e~l----~~ 107 (211)
|..|+=++-+|+|-+|.. ||..+...+.+|.-+..| ..+.++.+.+...+. +.++. +|..+.+ ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lg--v~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG--VKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcC--CceecccCCCCHHHHHHHHHHH
Confidence 455555523899998844 455554445577666666 334444444433111 22221 2322221 11
Q ss_pred -ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 -HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 -l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
....+|+|++|.... ++.+.++.+.+.+.|...++|.|-
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a 262 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDA 262 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecc
Confidence 135799999997644 234455666666788777766554
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=6 Score=34.89 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=58.6
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEc--chHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIG--DAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g--da~e~l~~l-~~~ 111 (211)
...+.++||-+ |+ +.|..++.+|++. +. +|++++.+++..+.+++ +. ...-+....- +..+.+..+ .+.
T Consensus 181 ~~~~g~~vlV~-G~g~vG~~~~~~a~~~---G~~~Vi~~~~~~~~~~~~~~-~g-a~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 181 KVEPGSTVAVF-GLGAVGLSAIMGAKIA---GASRIIGVDINEDKFEKAKE-FG-ATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH-cC-CCcEeccccccchHHHHHHHHhCCC
Confidence 34567888888 54 5666667777765 45 79999999998888865 32 1111221111 112222222 346
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|+|| |+... ...++...+.++++ |.++++-
T Consensus 255 ~d~vi-d~~g~--~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 255 VDYSF-ECTGN--ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCEEE-ECCCC--hHHHHHHHHhcccCCCEEEEEc
Confidence 99887 43221 24566677778775 7776644
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.83 Score=39.86 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=61.2
Q ss_pred CeEEEEccccH--HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH--hc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 42 QLMVVACANVA--NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI--LG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 42 ~~VLEi~Gtg~--G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~--~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
.+|+=+ |+|. |+.+..|+++ +..|+.++..++.++..+++ +. .......+... ... +...++||+|
T Consensus 3 m~I~Ii-GaGaiG~~~a~~L~~~----G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~-~~~--~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHIL-GAGSLGSLWACRLARA----GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP-AET--ADAAEPIHRL 74 (305)
T ss_pred ceEEEE-CCCHHHHHHHHHHHhC----CCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccC-CCC--cccccccCEE
Confidence 357777 6553 3344445432 56799999987766655542 22 11111111110 100 1113589999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|+.....+..+.++.+.+.+.++..++.+-|-+..
T Consensus 75 iv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 75 LLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 99876556678899999999888878888887754
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.46 E-value=3.3 Score=35.91 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCC--cEEEEE-eCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTG--GRVVCI-LRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~ti-E~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.-+|.=| ||| |+.....+.++...+ -.++++ |.+++.++...+.+.. .-...|..+++. .+.+|+|+|
T Consensus 3 ~irvgii-G~G-~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~-----~~~~~~~~~ll~--~~~iD~V~I 73 (342)
T COG0673 3 MIRVGII-GAG-GIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI-----AKAYTDLEELLA--DPDIDAVYI 73 (342)
T ss_pred eeEEEEE-ccc-HHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC-----CcccCCHHHHhc--CCCCCEEEE
Confidence 3467778 888 343333333333322 256665 9999887666655441 144566777765 456999999
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-.+...+.++...++. .|.-++|+=.+.
T Consensus 74 atp~~~H~e~~~~AL~----aGkhVl~EKPla 101 (342)
T COG0673 74 ATPNALHAELALAALE----AGKHVLCEKPLA 101 (342)
T ss_pred cCCChhhHHHHHHHHh----cCCEEEEcCCCC
Confidence 8776544444433332 244555554443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.29 Score=41.05 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=49.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH-hhhc-cCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL-LLSH-FREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~-l~~l-~~~fD~VfiD~ 119 (211)
-++||| |+-..+..+.-.. --.|+.||.++..-. +...|..+. +|.. .+.||+|.+.-
T Consensus 53 lrlLEV-Gals~~N~~s~~~-----~fdvt~IDLns~~~~--------------I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEV-GALSTDNACSTSG-----WFDVTRIDLNSQHPG--------------ILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEee-cccCCCCcccccC-----ceeeEEeecCCCCCC--------------ceeeccccCCCCCCcccceeEEEEEE
Confidence 479999 9865553332221 235999999873221 234444443 2222 57999997652
Q ss_pred ------CcCcHHHHHHHHHhcCCCCcE
Q 041509 120 ------NLENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 120 ------~~~~y~~~l~~~~~~L~pgG~ 140 (211)
+...--+.++.+.+.|+|+|.
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 233456788888889999888
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.2 Score=38.87 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=57.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+|+=+ |+|. .+..+|..+...+..|+-+..++. ....+..+. .......+..-.+..... ..+++|+||+..
T Consensus 6 m~I~Ii-G~Ga--iG~~lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilav 80 (313)
T PRK06249 6 PRIGII-GTGA--IGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVGL 80 (313)
T ss_pred cEEEEE-CCCH--HHHHHHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEEe
Confidence 468888 7543 333333333333567888887762 222111111 111111111001111111 136899999987
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
...+..+.++.+.+.+.+++.++...|-+..
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 7666677888888889888877777776643
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=90.38 E-value=2.7 Score=38.78 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCeEEEEcc-ccHHHHHHH--HHHHccCCCcEEEEEeCChhH---HHHHHHHhcCCCCcEEEEE----cchHHH----hh
Q 041509 41 AQLMVVACA-NVANATTLA--LAAAAHQTGGRVVCILRRVEE---YKLSKKILGLDASHVEFVI----GDAQSL----LL 106 (211)
Q Consensus 41 ~~~VLEi~G-tg~G~stl~--la~a~~~~~g~v~tiE~~~~~---~~~Ar~~~~~~~~~V~~~~----gda~e~----l~ 106 (211)
|..|+=+ | +|+|-+|.. ||..+...+.+|.-|+.|+.. .++.+.+.+ ...+.+.. .|+.++ +.
T Consensus 100 ~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~--~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 100 QNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT--KARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh--ccCCeEEeecCCCCHHHHHHHHHH
Confidence 4445555 6 899988766 565555445577666666543 333222222 12233332 243322 22
Q ss_pred hc-cCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEec
Q 041509 107 SH-FREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 107 ~l-~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+ .+.||+|++|..-+. ..+.+..+.+...|.-.++|.|-
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda 222 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDG 222 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecc
Confidence 22 358999999986542 23344444445677666666663
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=3.2 Score=35.74 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
.....+|...-+.++.. =|.. .+|+=..+-.+. + ..-++..+|..|+-+..-+++|.+ ..++++..+|....+
T Consensus 75 a~l~~yl~~i~~lN~~~-~l~~-YpGSP~lA~~ll---R-~qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l 147 (279)
T COG2961 75 AELEPYLDAVRQLNPGG-GLRY-YPGSPLLARQLL---R-EQDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLAL 147 (279)
T ss_pred HHHHHHHHHHHHhCCCC-Cccc-CCCCHHHHHHHc---c-hhceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHH
Confidence 33344455444443333 3677 676654433333 2 367999999999999999999984 568999999987766
Q ss_pred hhc---cCCccEEEEcCCcC---cHHHHHHHHHhcCC--CCcEEEEEec
Q 041509 106 LSH---FREADFVLIDCNLE---NHEGVLRAVQAGNK--PNGAVVVGYN 146 (211)
Q Consensus 106 ~~l---~~~fD~VfiD~~~~---~y~~~l~~~~~~L~--pgG~viv~dn 146 (211)
... .++=-+|+||.+.+ +|...++.+.+.++ ++|+..+=.-
T Consensus 148 ~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYP 196 (279)
T COG2961 148 KAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYP 196 (279)
T ss_pred hhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEe
Confidence 433 34568999998754 78776666655432 3566555343
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.5 Score=41.58 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCc
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNL 121 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~ 121 (211)
||.|-.+..+++.+.+.+-.++.||.|++..+.+++ .....++||+.+ .+.+. -++.|.+++..+.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 445677778888887656789999999999888874 237789999865 34332 3588988776443
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.19 E-value=3 Score=37.15 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=68.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE-
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI- 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi- 117 (211)
..+.+|.-|.|.-.|+-+.-+|..+ ++.|+-+|+|.+.+..-...+ ..+++.+..+...+-.. -.+.|+++-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~gl---gA~Vtild~n~~rl~~ldd~f---~~rv~~~~st~~~iee~-v~~aDlvIga 238 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGL---GADVTILDLNIDRLRQLDDLF---GGRVHTLYSTPSNIEEA-VKKADLVIGA 238 (371)
T ss_pred CCCccEEEECCccccchHHHHHhcc---CCeeEEEecCHHHHhhhhHhh---CceeEEEEcCHHHHHHH-hhhccEEEEE
Confidence 3445566673455688888888776 789999999988776655443 45788888888776543 467888763
Q ss_pred ---cCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 118 ---DCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 ---D~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
-+.+ ...=..++..+.++| |.++| |-+...|
T Consensus 239 VLIpgak-aPkLvt~e~vk~Mkp-GsViv-DVAiDqG 272 (371)
T COG0686 239 VLIPGAK-APKLVTREMVKQMKP-GSVIV-DVAIDQG 272 (371)
T ss_pred EEecCCC-CceehhHHHHHhcCC-CcEEE-EEEEcCC
Confidence 2222 223355666667787 66665 7777655
|
|
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=5.7 Score=33.83 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=60.2
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc-hHHHhhhc--cCC
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD-AQSLLLSH--FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd-a~e~l~~l--~~~ 111 (211)
...+.+.||=. | .++|..++.+|++. +.+++.+..+++..+.+++ +. ...-+.....+ ..+.+..+ ...
T Consensus 137 ~~~~~~~vlI~-ga~g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (334)
T PTZ00354 137 DVKKGQSVLIH-AGASGVGTAAAQLAEKY---GAATIITTSSEEKVDFCKK-LA-AIILIRYPDEEGFAPKVKKLTGEKG 210 (334)
T ss_pred CCCCCCEEEEE-cCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CcEEEecCChhHHHHHHHHHhCCCC
Confidence 34456777766 5 57888888888775 5677778888888888854 22 21111111112 22333322 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|++| |+-. .+.++.+.+.|+++|.++.+.
T Consensus 211 ~d~~i-~~~~---~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 211 VNLVL-DCVG---GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred ceEEE-ECCc---hHHHHHHHHHhccCCeEEEEe
Confidence 89988 4432 246667777888889877643
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=6.7 Score=31.84 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.++||-. |++ |..+..+++.+...+.+|+.+..+++..+.+.+.+.. ..+++++.+|..+. +.. ..+
T Consensus 4 ~~~~vlIt-Ga~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAII-GVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-YGNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEE-CCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45788888 653 4455666666655577999999998876655444432 13578888875432 111 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
.+|.++..+.
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 6798887653
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=90.10 E-value=6.9 Score=32.61 Aligned_cols=96 Identities=22% Similarity=0.114 Sum_probs=59.1
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
+...+.++||-. |+| .|..++.+|.+. +.+ |++++.+++..+.+++. +..+.+..... .... ...+|
T Consensus 93 ~~~~~g~~vlI~-g~g~vg~~~i~~a~~~---g~~~vi~~~~~~~~~~~~~~~--g~~~~~~~~~~---~~~~--~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVV-GLGLVGLLAAQLAKAA---GAREVVGVDPDAARRELAEAL--GPADPVAADTA---DEIG--GRGAD 161 (277)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCcEEEECCCHHHHHHHHHc--CCCccccccch---hhhc--CCCCC
Confidence 445567888888 664 477777788776 445 99999999988877764 11111111110 1111 35799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++|-..... ...+...+.|+++|.++..-
T Consensus 162 ~vl~~~~~~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGSP---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccCCh---HHHHHHHHHhcCCcEEEEEe
Confidence 887543322 35666677788888877543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.10 E-value=5.8 Score=33.76 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=60.0
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l--~~~f 112 (211)
...+.+.|+=. | .++|..++.+|.+. +.+|+.++.+++..+.+++ + +....+.... .+..+.+..+ .+.+
T Consensus 157 ~~~~g~~vli~-g~g~~g~~~~~~a~~~---G~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
T cd08276 157 PLKPGDTVLVQ-GTGGVSLFALQFAKAA---GARVIATSSSDEKLERAKA-L-GADHVINYRTTPDWGEEVLKLTGGRGV 230 (336)
T ss_pred CCCCCCEEEEE-CCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-c-CCCEEEcCCcccCHHHHHHHHcCCCCC
Confidence 34456666655 4 35777777777775 6789999999888887765 2 2211122112 2333333333 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+++ |.... ..+..+.+.|+++|.++.+.
T Consensus 231 d~~i-~~~~~---~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 231 DHVV-EVGGP---GTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred cEEE-ECCCh---HHHHHHHHhhcCCCEEEEEc
Confidence 9988 43222 34666777888889877643
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.3 Score=36.23 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=63.2
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH---hc---C--CCCcEEEEEcchHHHhhhccCCccEE
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI---LG---L--DASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~---~~---~--~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
|.=| |+ |..+..++..+...+-.|+-++.+++..+..+++ .. + +..++.+. .|..+.+ .+.+|+|
T Consensus 3 I~Ii-Ga--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---~~~~Dli 75 (326)
T PRK14620 3 ISIL-GA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---SDNATCI 75 (326)
T ss_pred EEEE-Cc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---hCCCCEE
Confidence 5556 55 4455555555544456899999998877666653 21 1 11233332 3443332 2578999
Q ss_pred EEcCCcCcHHHHHHHHHh-cCCCCcEEEEEecCCCC
Q 041509 116 LIDCNLENHEGVLRAVQA-GNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~-~L~pgG~viv~dn~~~~ 150 (211)
|+--......+.++.+.+ .+.++..++++.|-+..
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 998877778888999988 77776566666776643
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=90.09 E-value=6.7 Score=30.62 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=59.9
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C------CCCcEEEEEcchHHHhhhccCCccEE
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L------DASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~------~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
|.-+ |+|.+-++++...+ ..+-+|+-...+++..+..+++-. . +..++.+ ..|..+.+. ..|+|
T Consensus 2 I~Vi-GaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~----~ad~I 73 (157)
T PF01210_consen 2 IAVI-GAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE----DADII 73 (157)
T ss_dssp EEEE-SSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT----T-SEE
T ss_pred EEEE-CcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC----cccEE
Confidence 4556 77777665554333 345689999999987776665433 1 1235654 566666653 46999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++--+.....++++.+.+.+++ +..++
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~-~~~ii 100 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKK-GQIII 100 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHT-T-EEE
T ss_pred EecccHHHHHHHHHHHhhccCC-CCEEE
Confidence 9998888889999999999986 54444
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.32 Score=45.47 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=60.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC--hhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR--VEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~--~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
...+-++|+|+ .+|+|-+|.+|.. ..--|..|-.. +..+.+. ++ |+.. +.-|-.|..+....+||
T Consensus 362 ~~~~iRNVMDM-nAg~GGFAAAL~~----~~VWVMNVVP~~~~ntL~vI---ydRGLIG----~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 362 KWGRIRNVMDM-NAGYGGFAAALID----DPVWVMNVVPVSGPNTLPVI---YDRGLIG----VYHDWCEAFSTYPRTYD 429 (506)
T ss_pred cccceeeeeee-cccccHHHHHhcc----CCceEEEecccCCCCcchhh---hhcccch----hccchhhccCCCCcchh
Confidence 34456789999 8999998777753 23334333322 1112111 11 3311 12234444444468999
Q ss_pred EEEEcCCcC------cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 114 FVLIDCNLE------NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 114 ~VfiD~~~~------~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+|-.|+-.. .....+-++-+.|||+|.+++-|++
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 998875333 4578888999999999998887753
|
; GO: 0008168 methyltransferase activity |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.4 Score=42.16 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCcCcHH-
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNLENHE- 125 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~~~y~- 125 (211)
||.|-.+..+++.+...+-.++.||.||+..+.+++. ...++.||+.+ .+.+. -++.|.+++-.+..+-.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4567777788887766577999999999999888752 25689999864 44433 35789888766554322
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 041509 126 GVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 126 ~~l~~~~~~L~pgG~viv 143 (211)
.....+. .+.|.-.+++
T Consensus 480 ~i~~~~r-~~~p~~~Iia 496 (601)
T PRK03659 480 KIVELCQ-QHFPHLHILA 496 (601)
T ss_pred HHHHHHH-HHCCCCeEEE
Confidence 2333333 3455544443
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.3 Score=35.06 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHH-----------Hhh
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQS-----------LLL 106 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e-----------~l~ 106 (211)
.+.+++|=. |+ +|..+..+++.+...+.+|+.++.+++..+...+.+. ....++.++..|..+ .+.
T Consensus 10 ~~~k~vlIt-G~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVT-GA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEe-CC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 356788888 64 5566677776665556799999999877665555554 223467777766531 111
Q ss_pred hccCCccEEEEcC
Q 041509 107 SHFREADFVLIDC 119 (211)
Q Consensus 107 ~l~~~fD~VfiD~ 119 (211)
...+++|.|+..+
T Consensus 88 ~~~~~id~vi~~A 100 (247)
T PRK08945 88 EQFGRLDGVLHNA 100 (247)
T ss_pred HHhCCCCEEEECC
Confidence 1136899998765
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=89.86 E-value=2.7 Score=38.18 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----C--------C-CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----L--------D-ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~--------~-~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|.||.+..+|..+...+-+|+.+|.+++.++..++... + . ..++++ ..+..+.+ ...|+||
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~~----~~advvi 81 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDAI----RDADVII 81 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHHH----hhCCEEE
Confidence 35667777777765556789999999988765543210 0 0 122332 23333332 3579999
Q ss_pred EcCCcC----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNLE----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~~----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.-+.+ ......+.+.+.+++ |.+++......++
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~-g~lvi~~STv~pg 125 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRK-GATVVLESTVPPG 125 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCC-CCEEEEeCcCCCC
Confidence 875432 245566777777876 5666644455555
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.85 E-value=3.3 Score=34.60 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=60.2
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCN 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~ 120 (211)
++=+ | .|-.+..+|+.+...+-.|+.||.|++..+.+... .-....++||+.+ .|.+. -..+|.++....
T Consensus 3 iiIi-G--~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 3 IIII-G--AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----ELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEE-C--CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----hcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 4445 4 45666777877776567999999999987764321 1246778888854 55554 468999998877
Q ss_pred cCcHHHHHHHHHhc-CCCCcEEEEEecC
Q 041509 121 LENHEGVLRAVQAG-NKPNGAVVVGYNA 147 (211)
Q Consensus 121 ~~~y~~~l~~~~~~-L~pgG~viv~dn~ 147 (211)
...-.-.+-.+... +...-.+.-+.|.
T Consensus 76 ~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 76 NDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 65443333333322 3333445544443
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.85 E-value=8 Score=34.22 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=54.2
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD~Vf 116 (211)
.+.++||-. | .+.|..++.+|++. +.+|+.++.+++....+.+.+ +. + .++. .+. +.+..+.+.+|+||
T Consensus 182 ~~g~~VlV~-G~G~vG~~avq~Ak~~---Ga~vi~~~~~~~~~~~~~~~~-Ga-~--~vi~~~~~-~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVA-GLGGLGHVAVKIGKAF---GLKVTVISSSSNKEDEAINRL-GA-D--SFLVSTDP-EKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCcchhhhHHHhC-CC-c--EEEcCCCH-HHHHhhcCCCCEEE
Confidence 356777777 5 45777777777775 568888887765433332222 21 1 1111 111 12222234689887
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.-. ...++.+.+.|+++|.++.+-
T Consensus 253 -d~~g~--~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 -DTVSA--VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -ECCCC--HHHHHHHHHHhcCCcEEEEeC
Confidence 54321 235666778889999887653
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.26 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-CC-CcEEEEEcchHHHhh
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-DA-SHVEFVIGDAQSLLL 106 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~~-~~V~~~~gda~e~l~ 106 (211)
.++..|-|+| ||.|-.++.++. .+.+|++-|.+|++++.-+.|++ + .. .+|+++.-||.+.+.
T Consensus 248 k~gevv~D~F-aGvGPfa~Pa~k----K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVF-AGVGPFALPAAK----KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhh-cCcCccccchhh----cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 3566788996 999998887764 36899999999999999999998 3 33 459999999999884
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.3 Score=33.45 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCCeEEEE-ccccHHHHH--HHHHHHccCCCcEEEEEeCChhHHHH
Q 041509 40 NAQLMVVA-CANVANATT--LALAAAAHQTGGRVVCILRRVEEYKL 82 (211)
Q Consensus 40 ~~~~VLEi-~Gtg~G~st--l~la~a~~~~~g~v~tiE~~~~~~~~ 82 (211)
+++.|.=. +..|.|-+| ..||.++...+.+|.-||.|+..-..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l 61 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVM 61 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhH
Confidence 34554444 124666654 45777776667799999999765443
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=6 Score=33.98 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=60.1
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+.+.||-. |+ ..|..++.+|.+. +.+++.++.+++..+.+++..... +... +..+.+..+ +.+|+
T Consensus 159 ~~~~~~~vlI~-g~~g~~g~~~~~la~~~---g~~vi~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~v~~~-~~~d~ 228 (334)
T PRK13771 159 GVKKGETVLVT-GAGGGVGIHAIQVAKAL---GAKVIAVTSSESKAKIVSKYADYV---IVGS--KFSEEVKKI-GGADI 228 (334)
T ss_pred CCCCCCEEEEE-CCCccHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHh---cCch--hHHHHHHhc-CCCcE
Confidence 34456677776 54 7888888888875 678999999998888876541110 1111 222333333 46898
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++ |+... .....+.+.|+++|.++...
T Consensus 229 ~l-d~~g~---~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 229 VI-ETVGT---PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EE-EcCCh---HHHHHHHHHHhcCCEEEEEe
Confidence 87 54322 24567777788899877654
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=89.53 E-value=8.4 Score=33.35 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=59.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
..+.++||-....+.|..++.+|++. + .+|+.++.+++..+.+++. +...-+.....+..+.+..+ ...+|+
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~---G~~~v~~~~~~~~~~~~~~~~--g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLY---SPSKIIMVDLDDNRLEVAKKL--GATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHh--CCCceeccccccHHHHHHHHhCCCCCCE
Confidence 34566766561356666777777765 4 6899999998887777642 22222333333333322222 357998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++ |+... ...++.+.+.|+++|.++..
T Consensus 239 vl-d~~g~--~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VI-EAVGI--PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EE-ECCCC--HHHHHHHHHhccCCcEEEEe
Confidence 87 54321 23567777888888887654
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.36 Score=42.04 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=73.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
..=|.+.+|+..... ...++++ |||-|-.+. ..+.-.+++.|++...+..|++. +...+..+|++
T Consensus 31 ~~Wp~v~qfl~~~~~---gsv~~d~-gCGngky~~------~~p~~~~ig~D~c~~l~~~ak~~-----~~~~~~~ad~l 95 (293)
T KOG1331|consen 31 APWPMVRQFLDSQPT---GSVGLDV-GCGNGKYLG------VNPLCLIIGCDLCTGLLGGAKRS-----GGDNVCRADAL 95 (293)
T ss_pred CccHHHHHHHhccCC---cceeeec-ccCCcccCc------CCCcceeeecchhhhhccccccC-----CCceeehhhhh
Confidence 444667777765533 5678999 999995321 11346789999998888777642 22278889998
Q ss_pred HHhhhccCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 103 SLLLSHFREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv 143 (211)
..... ..+||.+..=+-. ..-...++++.+.|+|||-..+
T Consensus 96 ~~p~~-~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 96 KLPFR-EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred cCCCC-CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 87543 7899998755422 2346789999999999998655
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=2.8 Score=38.64 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=56.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH-HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY-KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~-~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+|.=| | |+|..+.+++.++...+.+|+.++.+++.. +.|++ . + ++ ...+..+. -...|+||+..+.
T Consensus 2 kI~II-G-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~-~-g----v~-~~~~~~e~----~~~aDvVIlavp~ 68 (437)
T PRK08655 2 KISII-G-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE-L-G----VE-YANDNIDA----AKDADIVIISVPI 68 (437)
T ss_pred EEEEE-e-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-c-C----Ce-eccCHHHH----hccCCEEEEecCH
Confidence 35556 5 345666677777765456899999998764 33332 1 1 11 12333333 2457999998887
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
....+.++.+.+.++| |.+++ |..
T Consensus 69 ~~~~~vl~~l~~~l~~-~~iVi-Dvs 92 (437)
T PRK08655 69 NVTEDVIKEVAPHVKE-GSLLM-DVT 92 (437)
T ss_pred HHHHHHHHHHHhhCCC-CCEEE-Ecc
Confidence 7777888888888887 55554 543
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=89.39 E-value=10 Score=32.20 Aligned_cols=100 Identities=23% Similarity=0.155 Sum_probs=60.3
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....++..||=. | .++|..++.+|++. +.+|++++.+++..+.+++ +. ...-+.....+..+.+..+ ...
T Consensus 138 ~~~~~~~~vlI~-g~~~~~g~~~~~la~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ 211 (324)
T cd08244 138 ATLTPGDVVLVT-AAAGGLGSLLVQLAKAA---GATVVGAAGGPAKTALVRA-LG-ADVAVDYTRPDWPDQVREALGGGG 211 (324)
T ss_pred cCCCCCCEEEEE-cCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cC-CCEEEecCCccHHHHHHHHcCCCC
Confidence 344556777777 6 57888888888875 6789999999988877754 22 2111211122333333222 246
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+-.. ...+.+.+.|+++|.++.+-
T Consensus 212 ~d~vl-~~~g~---~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 212 VTVVL-DGVGG---AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred ceEEE-ECCCh---HhHHHHHHHhccCcEEEEEe
Confidence 99997 44322 23466677788888877543
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.35 E-value=4.1 Score=35.18 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=62.1
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--C-----CCcEEEEEcchHHHhhhccCCccE
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--D-----ASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--~-----~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+|.=| |+ |..+..++..+...+-.|+.++.+++..+..++... . . ...++. ..+..+. ....|+
T Consensus 3 kI~ii-G~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~D~ 74 (325)
T PRK00094 3 KIAVL-GA--GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA----LADADL 74 (325)
T ss_pred EEEEE-CC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH----HhCCCE
Confidence 46666 65 566667766665546689999999988776665421 0 0 012322 2233333 246799
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
||+-.......+.++.+.+.+.++..++..-|.+.+
T Consensus 75 vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 999877666677788888878775545545555654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.2 Score=37.04 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=54.7
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++|.=| |+|. .+..++.++...+ .+|+.+|.+++..+.+++. +... . ...+..+. ....|+|++..
T Consensus 7 ~~I~II-G~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~--g~~~--~-~~~~~~~~----~~~aDvViiav 74 (307)
T PRK07502 7 DRVALI-GIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARAREL--GLGD--R-VTTSAAEA----VKGADLVILCV 74 (307)
T ss_pred cEEEEE-eeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC--CCCc--e-ecCCHHHH----hcCCCEEEECC
Confidence 468888 7653 3444444443322 3899999999887776541 2111 1 12233332 24689999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.......+++.+.+.++++ .+++
T Consensus 75 p~~~~~~v~~~l~~~l~~~-~iv~ 97 (307)
T PRK07502 75 PVGASGAVAAEIAPHLKPG-AIVT 97 (307)
T ss_pred CHHHHHHHHHHHHhhCCCC-CEEE
Confidence 8766677788888878874 4443
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.24 E-value=4.7 Score=34.82 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc---hHHHhhhccCCccE
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGD---AQSLLLSHFREADF 114 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd---a~e~l~~l~~~fD~ 114 (211)
+.++||-. |+| .|..++.+|++. +. +++.++.+++..+.+++. . . + .++..+ ..+... ..+.+|+
T Consensus 165 ~~~~VLI~-g~g~vG~~~~~lak~~---G~~~v~~~~~s~~~~~~~~~~-g-~-~--~vi~~~~~~~~~~~~-~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVT-GAGPIGALVVAAARRA---GAAEIVATDLADAPLAVARAM-G-A-D--ETVNLARDPLAAYAA-DKGDFDV 234 (339)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHc-C-C-C--EEEcCCchhhhhhhc-cCCCccE
Confidence 56778777 554 477777777765 44 799999988888766552 2 1 1 122111 111111 1345899
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++--.... ..++.+.+.|+++|.++...
T Consensus 235 vld~~g~~---~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGAP---AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEEe
Confidence 87543322 34666777788889887653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=89.20 E-value=7.9 Score=33.44 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~f 112 (211)
+...+..+||-. |+| +|..++.+|++. +.+ ++.+..+++..+.+++ + +...-+........++.... ...+
T Consensus 155 ~~~~~~~~vlI~-g~g~~g~~~~~lA~~~---G~~~v~~~~~~~~~~~~l~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 155 AGITLGDTVVVI-GAGTIGLLAIQWLKIL---GAKRVIAVDIDDEKLAVARE-L-GADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHH-c-CCCEEecCccccHHHHHHHhCCCCC
Confidence 344566788888 654 488888888875 444 9999988887776643 2 22111221111222222222 2459
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+++-.... ...+..+.+.|+++|.++...
T Consensus 229 d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAAGS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 988743222 234566677778888877654
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.18 E-value=9.7 Score=32.83 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=60.4
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+..+||-. |+ ++|..++.+|++. +.+|+.+..+++..+.+++ +. ...-+.....+..+.+.++ .+.+
T Consensus 162 ~~~~~~~vlV~-g~~~~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 162 GLKPGDWVVIS-GAGGGLGHLGVQYAKAM---GLRVIAIDVGDEKLELAKE-LG-ADAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCCCEEEEE-CCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHH-cC-CcEEEcCCCccHHHHHHHHhcCCCC
Confidence 34556778777 54 4888888888876 5689999999988777743 32 1111111111333333333 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.++-+.... .....+.+.++++|.++.+
T Consensus 236 d~vl~~~~~~---~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 236 HAVVVTAVSA---AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CEEEEcCCch---HHHHHHHHHhhcCCEEEEe
Confidence 9988655433 3455666677788887764
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.6 Score=40.81 Aligned_cols=100 Identities=14% Similarity=0.018 Sum_probs=57.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc-----CCC-------C-cEEEEEcchHHHhhh
Q 041509 43 LMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG-----LDA-------S-HVEFVIGDAQSLLLS 107 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~-----~~~-------~-~V~~~~gda~e~l~~ 107 (211)
+|.-+ |+ ||.++.+|..+... +-+|+++|.+++.++..++... ++. . +.+ ...|..+.+
T Consensus 3 ~I~Vi-G~--GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i-- 76 (473)
T PLN02353 3 KICCI-GA--GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV-- 76 (473)
T ss_pred EEEEE-CC--CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH--
Confidence 35556 54 55556655555432 4679999999999877654321 110 0 111 122222221
Q ss_pred ccCCccEEEEcC--Cc----------C---cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 108 HFREADFVLIDC--NL----------E---NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 108 l~~~fD~VfiD~--~~----------~---~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
...|++|+.- +. . ......+.+.+.|++ |.++|.....++|
T Consensus 77 --~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~-~~lVv~~STvp~G 132 (473)
T PLN02353 77 --AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS-DKIVVEKSTVPVK 132 (473)
T ss_pred --hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-CcEEEEeCCCCCC
Confidence 3468888742 11 1 236677888888886 6777778777777
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.6 Score=37.21 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=63.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cC-CccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FR-EADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~-~fD~VfiD~ 119 (211)
-+++|+| ||+|-..+-+-.+- ---+.++|++|.+.+.-+.|+.. -.++.+|..+..... .+ .+|++.-..
T Consensus 4 ~~~idLF-sG~GG~~lGf~~ag---f~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLF-AGIGGLSLGFEEAG---FEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeec-cCCchHHHHHHhcC---CeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCC
Confidence 4689996 88888766665542 24679999999999999988762 456677777665432 22 788886531
Q ss_pred --------Cc-------C--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 120 --------NL-------E--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 120 --------~~-------~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ + .+.++.+.+.. ++| .+++.+|+-
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~-~~P--~~fv~ENV~ 118 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQ-LRP--KFFVLENVK 118 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHh-hCC--CEEEEecCc
Confidence 11 1 24555555554 566 456669863
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=89.15 E-value=6.1 Score=36.32 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=53.8
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
...++|+-+ |+| +|...+.+++++ +.+|+.+|.+|...+.|++. |. +.. +..+.+ ...|+||.
T Consensus 200 l~GktVvVi-G~G~IG~~va~~ak~~---Ga~ViV~d~d~~R~~~A~~~--G~----~~~--~~~e~v----~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVA-GYGDVGKGCAQSLRGQ---GARVIVTEVDPICALQAAME--GY----EVM--TMEEAV----KEGDIFVT 263 (413)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEECChhhHHHHHhc--CC----EEc--cHHHHH----cCCCEEEE
Confidence 357889999 766 355555555554 67899999999988888652 22 111 122322 35798875
Q ss_pred cCCcCcHHHHHHH-HHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRA-VQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~-~~~~L~pgG~viv~ 144 (211)
.... ...+.. ..+.+++||.++.+
T Consensus 264 atG~---~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 264 TTGN---KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CCCC---HHHHHHHHHhcCCCCcEEEEe
Confidence 4432 234444 47788887766544
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=2.5 Score=34.76 Aligned_cols=76 Identities=22% Similarity=0.108 Sum_probs=49.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH------hhhccCCccE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL------LLSHFREADF 114 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~------l~~l~~~fD~ 114 (211)
++++-+ |+ +|..+..+++.+-..+.+|+.++.+++..+...+.+. ....+++++..|..+. +......+|.
T Consensus 2 ~~vlIt-Ga-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILII-GA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEE-cC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 467777 53 4556677777766557799999999876655444444 2245788998886543 2222346799
Q ss_pred EEEcC
Q 041509 115 VLIDC 119 (211)
Q Consensus 115 VfiD~ 119 (211)
++..+
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 99754
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.94 E-value=5 Score=35.85 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE-EcchHHHhh-hccCCccEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV-IGDAQSLLL-SHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~-~gda~e~l~-~l~~~fD~V 115 (211)
.++++|--+ | .|.|-.++-+|.|+ +.+||.|+.++..-+.|-+.+. ....|.+. ..|..+.+. .++.-.|-+
T Consensus 180 ~pG~~vgI~-GlGGLGh~aVq~AKAM---G~rV~vis~~~~kkeea~~~LG-Ad~fv~~~~d~d~~~~~~~~~dg~~~~v 254 (360)
T KOG0023|consen 180 GPGKWVGIV-GLGGLGHMAVQYAKAM---GMRVTVISTSSKKKEEAIKSLG-ADVFVDSTEDPDIMKAIMKTTDGGIDTV 254 (360)
T ss_pred CCCcEEEEe-cCcccchHHHHHHHHh---CcEEEEEeCCchhHHHHHHhcC-cceeEEecCCHHHHHHHHHhhcCcceee
Confidence 455665444 3 56999999999998 6899999999877777766554 12334443 333333222 223334444
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..=+. .-++.+..+||++|.++..-
T Consensus 255 ~~~a~-----~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 255 SNLAE-----HALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred eeccc-----cchHHHHHHhhcCCEEEEEe
Confidence 31112 23555566677899987754
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=3.3 Score=37.58 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CCC-----CcEEEEEc-chHHHhhhccCCccEEEEcC
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LDA-----SHVEFVIG-DAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~~-----~~V~~~~g-da~e~l~~l~~~fD~VfiD~ 119 (211)
|.||.++-+|..+.. +-+|+++|++++.++..++... ++. ...++... |..+. ....|+|++.-
T Consensus 7 GlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----~~~ad~vii~V 81 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----YRDADYVIIAT 81 (388)
T ss_pred CCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----hcCCCEEEEeC
Confidence 456666666655543 5689999999999888876432 100 12223221 12222 24579999864
Q ss_pred CcC-----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 120 NLE-----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 120 ~~~-----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.. ...+.++.+.+ +++ |.++|.....++|
T Consensus 82 pt~~~~k~~~~dl~~v~~v~~~i~~-~~~-g~lVV~~STv~pg 122 (388)
T PRK15057 82 PTDYDPKTNYFNTSSVESVIKDVVE-INP-YAVMVIKSTVPVG 122 (388)
T ss_pred CCCCccCCCCcChHHHHHHHHHHHh-cCC-CCEEEEeeecCCc
Confidence 322 22455666766 666 6677766667776
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.3 Score=33.45 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
..++||-+ | ++|..+..+++.+...+.+|+.+..+++.++.....+.....++.++..|..+. +.. ..+
T Consensus 8 ~~k~ilIt-G-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVT-G-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEE-C-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45788888 6 455566777776665577899999999887666665553334688888886432 111 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 7899887654
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.83 E-value=7.7 Score=34.23 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=60.4
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
...+.++||-. |+ +.|..++.+|++.. ..++++++.+++..+.+++. . ...-+.....+..+.+..+ ...+|+
T Consensus 183 ~~~~g~~vlI~-g~g~vG~~~~~la~~~G--~~~v~~~~~~~~k~~~~~~~-g-~~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 183 KPRPGSSIAVF-GAGAVGLAAVMAAKIAG--CTTIIAVDIVDSRLELAKEL-G-ATHVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHc-C-CcEEecCCCcCHHHHHHHHhCCCCcE
Confidence 34556788887 54 56887888888763 23799999999888877652 2 1111111111222222222 457998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+--.... ..+..+.+.|+++|.++....
T Consensus 258 vld~~g~~---~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 258 ALDTTGVP---AVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEECCCCc---HHHHHHHHHhccCCEEEEeCc
Confidence 87433222 346667777788888776543
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.81 E-value=5.5 Score=35.57 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=60.3
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
++..++..+.-. |. +.|.+.+.-|++.. .+++++||+|++..+.|++.=. ....+ ++ ...+.|.+.++ ++.
T Consensus 188 Akv~~GstvAVf-GLG~VGLav~~Gaka~G--AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-d~-~~~i~evi~EmTdgG 262 (375)
T KOG0022|consen 188 AKVEPGSTVAVF-GLGGVGLAVAMGAKAAG--ASRIIGVDINPDKFEKAKEFGATEFINPK-DL-KKPIQEVIIEMTDGG 262 (375)
T ss_pred cccCCCCEEEEE-ecchHHHHHHHhHHhcC--cccEEEEecCHHHHHHHHhcCcceecChh-hc-cccHHHHHHHHhcCC
Confidence 455667777766 54 45666666666653 5899999999999999987533 11111 11 22567777665 788
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVV 142 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~vi 142 (211)
+|+-|=..... +.+++++...+.| |.-+
T Consensus 263 vDysfEc~G~~---~~m~~al~s~h~GwG~sv 291 (375)
T KOG0022|consen 263 VDYSFECIGNV---STMRAALESCHKGWGKSV 291 (375)
T ss_pred ceEEEEecCCH---HHHHHHHHHhhcCCCeEE
Confidence 99998543322 3344444444445 4433
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.5 Score=37.48 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHH--hhCCCCeEEEEcc-ccHHHHHHHH---HHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch----
Q 041509 32 ISALA--AGNNAQLMVVACA-NVANATTLAL---AAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA---- 101 (211)
Q Consensus 32 L~~l~--~~~~~~~VLEi~G-tg~G~stl~l---a~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda---- 101 (211)
|..+. .+.+..++.||+| .|+|-+++++ +.+. ..++++.=||.+...-....+.+.-..+++.+..-+.
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~ 121 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQA 121 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 55554 4678888999944 7899998865 3333 3477887777765443332222221123444444332
Q ss_pred HHHhhhc--cCCccEEEEcCCcCcH---------------------HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSLLLSH--FREADFVLIDCNLENH---------------------EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~l~~l--~~~fD~VfiD~~~~~y---------------------~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+.+..+ .+.+|+|++|.-...+ .+.+..+...++..|+.+++-|-.
T Consensus 122 l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 122 LEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred HHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 2333322 4689999999622100 134455556666778877777754
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.91 Score=39.21 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=55.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CCC---------CcEEEEEcchHH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LDA---------SHVEFVIGDAQS 103 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~~---------~~V~~~~gda~e 103 (211)
++|-=| |+| ..+..+|..+...+-+|+.+|.+++.++.+++.+. +.. .++.+ ..+. +
T Consensus 5 ~~V~vI-G~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~ 79 (295)
T PLN02545 5 KKVGVV-GAG--QMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-E 79 (295)
T ss_pred CEEEEE-CCC--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-H
Confidence 457777 664 44455555544446799999999999887665432 110 11221 1222 2
Q ss_pred HhhhccCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv 143 (211)
. -..-|+|+.... ......+++.+.+.++| +.+++
T Consensus 80 ~----~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~-~~il~ 116 (295)
T PLN02545 80 E----LRDADFIIEAIVESEDLKKKLFSELDRICKP-SAILA 116 (295)
T ss_pred H----hCCCCEEEEcCccCHHHHHHHHHHHHhhCCC-CcEEE
Confidence 2 245799998765 33456778888887877 55554
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.6 Score=39.31 Aligned_cols=47 Identities=11% Similarity=-0.062 Sum_probs=39.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC------CCcEEEEEeCChhHHHHHHHHhc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ------TGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~------~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
+-.++|| |.|.|..+.-+.+.+.. ...++.-||++|+..+.-+++++
T Consensus 78 ~~~lvEi-GaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 78 PLKLVEI-GAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CceEEEe-CCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4569999 99999998887776632 25789999999999999998887
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.82 Score=39.41 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=58.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------C-C---------CCcEEEEEcchH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------L-D---------ASHVEFVIGDAQ 102 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~-~---------~~~V~~~~gda~ 102 (211)
++|.-| |+|+=-+++ |..+...+-+|+.+|.+++.++.+++.++ + . ..++++ ..|..
T Consensus 4 ~kIaVi-GaG~mG~~i--A~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~ 79 (287)
T PRK08293 4 KNVTVA-GAGVLGSQI--AFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA 79 (287)
T ss_pred cEEEEE-CCCHHHHHH--HHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH
Confidence 467778 776433333 33333336789999999999888876642 0 1 023332 23333
Q ss_pred HHhhhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 103 SLLLSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+.+ ..-|+|+....-. ....+++.+.+.+.+ +.++ ++|..
T Consensus 80 ~a~----~~aDlVieavpe~~~~k~~~~~~l~~~~~~-~~ii-~sntS 121 (287)
T PRK08293 80 EAV----KDADLVIEAVPEDPEIKGDFYEELAKVAPE-KTIF-ATNSS 121 (287)
T ss_pred HHh----cCCCEEEEeccCCHHHHHHHHHHHHhhCCC-CCEE-EECcc
Confidence 332 4579999876533 356778888887765 5555 35543
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=88.55 E-value=6.2 Score=27.75 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 70 VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 70 v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|.-+|-++...+..++.+....-..-....+..+.+..+ ...||+|++|...+ +..++++.+...- |...+++.-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecccccccccccccccc-ccccEEEec
Confidence 456899999999999888821111233566666666544 56899999997544 5567777776654 455555544
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.48 E-value=2.8 Score=34.35 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=51.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh---------hhccCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL---------LSHFREA 112 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l---------~~l~~~f 112 (211)
+++|=. | ++|+.+..+++.+...+.+|+.++.+++..+.....+.....++.++.+|..+.- ....++.
T Consensus 2 ~~vlIt-G-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVT-G-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEc-C-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 456666 5 4677778888777655779999999987766665555433456888888865421 1113568
Q ss_pred cEEEEcC
Q 041509 113 DFVLIDC 119 (211)
Q Consensus 113 D~VfiD~ 119 (211)
|.|+..+
T Consensus 80 d~vi~~a 86 (255)
T TIGR01963 80 DILVNNA 86 (255)
T ss_pred CEEEECC
Confidence 9998765
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.29 E-value=4.3 Score=37.11 Aligned_cols=95 Identities=22% Similarity=0.219 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CC---------CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LD---------ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~---------~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|+||.++-.+..+.+.+-.|+++|+|++.++..++... ++ ..|.+| ..|..+.+ ...|++|
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~----~~adv~f 81 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF-TTDYEEAV----KDADVVF 81 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-EcCHHHHH----hcCCEEE
Confidence 45666665554444557899999999999887765542 11 112333 22333332 3468888
Q ss_pred EcCCc----------CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNL----------ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~----------~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|.-.. +......+.+.+.++ +..++|.....+.|
T Consensus 82 IavgTP~~~dg~aDl~~V~ava~~i~~~~~-~~~vvV~KSTVPvG 125 (414)
T COG1004 82 IAVGTPPDEDGSADLSYVEAVAKDIGEILD-GKAVVVIKSTVPVG 125 (414)
T ss_pred EEcCCCCCCCCCccHHHHHHHHHHHHhhcC-CCeEEEEcCCCCCC
Confidence 85321 112556666777675 34777777777776
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.25 E-value=3 Score=35.71 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH--hhhccCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL--LLSHFREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~--l~~l~~~fD~Vf 116 (211)
.++||-. | |+|+.+.++++.+...+-+|+++..++........... +...+++++.+|..+. +......+|.||
T Consensus 4 ~~~ilVt-G-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVT-G-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEE-C-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 4678877 4 58999999998887667789888887654332222211 2235799999998653 223345689998
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
.-+.
T Consensus 82 h~A~ 85 (322)
T PLN02662 82 HTAS 85 (322)
T ss_pred EeCC
Confidence 7653
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=2.3 Score=40.95 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=49.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
++|+=+ | .|-.+-.+++.+...+-.++.||.|++.++.+++. ...++.||+.+ .+.+. -++.|.+++.
T Consensus 401 ~~vII~-G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 401 PRVIIA-G--FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred CcEEEE-e--cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 455545 4 45666667777665466899999999999988752 25689999864 44432 3578988877
Q ss_pred CCcC
Q 041509 119 CNLE 122 (211)
Q Consensus 119 ~~~~ 122 (211)
.+..
T Consensus 472 ~~d~ 475 (621)
T PRK03562 472 IDDP 475 (621)
T ss_pred eCCH
Confidence 6544
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.12 E-value=8.1 Score=37.52 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=49.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FRE 111 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~~ 111 (211)
.+.||-+ |+ +|..+..+++.+...+.+|+.++.+++..+.+.+.+... .++.++..|..+. +... .++
T Consensus 422 gk~vLVT-Ga-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 422 GKVALVT-GA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCEEEEe-cC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4678877 64 333445555555545789999999998776666555422 5688888875331 1111 357
Q ss_pred ccEEEEcCC
Q 041509 112 ADFVLIDCN 120 (211)
Q Consensus 112 fD~VfiD~~ 120 (211)
+|.||..+.
T Consensus 499 iDvvI~~AG 507 (681)
T PRK08324 499 VDIVVSNAG 507 (681)
T ss_pred CCEEEECCC
Confidence 999998764
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=88.06 E-value=9.3 Score=29.89 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=52.4
Q ss_pred cccHHHHHHH--HHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEc----chHHHh----h-hccCCccEEE
Q 041509 49 ANVANATTLA--LAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIG----DAQSLL----L-SHFREADFVL 116 (211)
Q Consensus 49 Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~g----da~e~l----~-~l~~~fD~Vf 116 (211)
-+|+|-+|+. ++..+...+.+|..++.|+......++... .....+.+... |..+.+ . .....+|+|+
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 87 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVI 87 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 4788888775 344444445678888877643322221111 11123444332 333222 1 1256899999
Q ss_pred EcCCcCc-----HHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+|..... ....+..+.+.+.+.+.++|++.
T Consensus 88 iDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~ 122 (173)
T cd03115 88 VDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDA 122 (173)
T ss_pred EECcccchhhHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 9987542 23333444444567788888774
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=4.5 Score=37.42 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCeEEEEcc-ccHHHHHHH--HHHHccCCCcEEEEEeCChh---HHHHHHHHhcCCCCcEEEEE----cchHHHhhhc-
Q 041509 40 NAQLMVVACA-NVANATTLA--LAAAAHQTGGRVVCILRRVE---EYKLSKKILGLDASHVEFVI----GDAQSLLLSH- 108 (211)
Q Consensus 40 ~~~~VLEi~G-tg~G~stl~--la~a~~~~~g~v~tiE~~~~---~~~~Ar~~~~~~~~~V~~~~----gda~e~l~~l- 108 (211)
+|..|+=+ | +|+|-+|.. ||..+...+-+|.-|+.|.. ..++.+...... .+.+.. .|+.+.+...
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~--gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKI--GVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHc--CCcEEecCCccCHHHHHHHHH
Confidence 35566666 5 888888665 66666554557766766653 222233322211 122322 3433333211
Q ss_pred --cCCccEEEEcCCcCcH--HHH---HHHHHhcCCCCcEEEEEec
Q 041509 109 --FREADFVLIDCNLENH--EGV---LRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y--~~~---l~~~~~~L~pgG~viv~dn 146 (211)
...+|+|++|.+.... .+. +..+...+.|...++++|-
T Consensus 171 ~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred HHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence 2456999999875432 233 4445555678777877774
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=87.96 E-value=5.4 Score=34.59 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=56.6
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCc
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLEN 123 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~ 123 (211)
|-=| |+ |..+..|+..+...+-+|+..|.+++..+.+++. +.. ...+..+.... ....|+||+--+...
T Consensus 3 Ig~I-Gl--G~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~--g~~-----~~~s~~~~~~~-~~~~dvIi~~vp~~~ 71 (298)
T TIGR00872 3 LGLI-GL--GRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED--RTT-----GVANLRELSQR-LSAPRVVWVMVPHGI 71 (298)
T ss_pred EEEE-cc--hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--CCc-----ccCCHHHHHhh-cCCCCEEEEEcCchH
Confidence 4445 54 6666677777766567899999999887766542 110 01233343322 245799998876666
Q ss_pred HHHHHHHHHhcCCCCcEEEE
Q 041509 124 HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 124 y~~~l~~~~~~L~pgG~viv 143 (211)
..+.++.+.+.|++| .+++
T Consensus 72 ~~~v~~~l~~~l~~g-~ivi 90 (298)
T TIGR00872 72 VDAVLEELAPTLEKG-DIVI 90 (298)
T ss_pred HHHHHHHHHhhCCCC-CEEE
Confidence 677888888888874 4544
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=87.91 E-value=12 Score=29.83 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
-+.++++.|...+.. .+..+|+=| ||=+-|.++.- ......+++-.|.|........+ ...+.-.+.
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iacl-stPsl~~~l~~---~~~~~~~~~Lle~D~RF~~~~~~-------~F~fyD~~~ 75 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACL-STPSLYEALKK---ESKPRIQSFLLEYDRRFEQFGGD-------EFVFYDYNE 75 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEE-eCcHHHHHHHh---hcCCCccEEEEeecchHHhcCCc-------ceEECCCCC
Confidence 456677666655544 345789999 78777754433 11236789999999765542211 111222222
Q ss_pred -HHHhhhccCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 -QSLLLSHFREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 -~e~l~~l~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++...+.++||+|++|.+.- -...+.+.+.-++++++.++++-
T Consensus 76 p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 76 PEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 333334568999999999862 12333455555567767777643
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.4 Score=40.00 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=52.2
Q ss_pred eCChhHHHHHHHHhc---CCCCcEEEEEcchHHHhhhc-cCCccEEEE-cC----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 74 LRRVEEYKLSKKILG---LDASHVEFVIGDAQSLLLSH-FREADFVLI-DC----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 74 E~~~~~~~~Ar~~~~---~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi-D~----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+..|..+. ++|++ ...++|++++++..+.+.+. .+++|.+.+ |. +.+.+.+.++.+.+.++|||.|+.
T Consensus 256 ~~~P~YL~--~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~- 332 (380)
T PF11899_consen 256 DCCPPYLR--PENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW- 332 (380)
T ss_pred CCCChhhc--HhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE-
Confidence 55554332 44444 22489999999999999876 689998765 53 345778899999999999887765
Q ss_pred ecCCC
Q 041509 145 YNAFR 149 (211)
Q Consensus 145 dn~~~ 149 (211)
-++..
T Consensus 333 Rsa~~ 337 (380)
T PF11899_consen 333 RSAAV 337 (380)
T ss_pred eeCCC
Confidence 44443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.84 E-value=6.9 Score=36.97 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE---------------EEcchH
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF---------------VIGDAQ 102 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~---------------~~gda~ 102 (211)
.++.+|+-+ |+| +|..++.++.++ +..|+.+|.+++..+.+++ +. .+.+++ ...+..
T Consensus 162 vp~akVlVi-GaG~iGl~Aa~~ak~l---GA~V~v~d~~~~rle~a~~-lG--a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVI-GAGVAGLAAIGAANSL---GAIVRAFDTRPEVKEQVQS-MG--AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cC--CeEEeccccccccccccceeecCHHHH
Confidence 467899999 665 467777777775 5679999999998888876 33 111111 111111
Q ss_pred H----HhhhccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC-ce--ecCCCcEEEeecCCcEEEE
Q 041509 103 S----LLLSHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG-SW--RSSGSKSQLLPIGEGLLVT 172 (211)
Q Consensus 103 e----~l~~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~-~~--~~~~~~~v~lpig~Gl~v~ 172 (211)
+ .+++....+|+|+-.. .++.-.=..++..+.++|| .++| |-...+| .. ..|. . +.-..+|+.+.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIV-DlA~d~GGn~E~t~p~--~-~~~~~~GV~~~ 309 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIV-DLAAEQGGNCEYTKPG--E-VYTTENQVKVI 309 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEE-EeeeCCCCCEEEecCc--e-EEEecCCEEEE
Confidence 1 1222246799997655 2221112456667778885 4544 6555554 32 2232 1 11225567665
Q ss_pred EEe
Q 041509 173 RIA 175 (211)
Q Consensus 173 ~~~ 175 (211)
-..
T Consensus 310 gv~ 312 (511)
T TIGR00561 310 GYT 312 (511)
T ss_pred eeC
Confidence 543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.6 Score=37.61 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=55.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----C----CC---------CcEEEEEcchHH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----L----DA---------SHVEFVIGDAQS 103 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~----~~---------~~V~~~~gda~e 103 (211)
++|.=| |+ |..+..+|..+...+-+|+.+|.+++.++.++++.. + .. .++++ ..+..+
T Consensus 2 ~~V~VI-G~--G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 77 (288)
T PRK09260 2 EKLVVV-GA--GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA 77 (288)
T ss_pred cEEEEE-Cc--cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH
Confidence 356667 66 444455555544446789999999999988876532 1 00 11222 223323
Q ss_pred HhhhccCCccEEEEcCCcCc--HHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCNLEN--HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~--y~~~l~~~~~~L~pgG~viv 143 (211)
. -...|+|+..-.... ...++..+.+.++| +.+++
T Consensus 78 ~----~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~-~~il~ 114 (288)
T PRK09260 78 A----VADADLVIEAVPEKLELKKAVFETADAHAPA-ECYIA 114 (288)
T ss_pred h----hcCCCEEEEeccCCHHHHHHHHHHHHhhCCC-CcEEE
Confidence 2 245799997755432 34677778887777 55543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=3.5 Score=37.97 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=52.9
Q ss_pred CCCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCChhH---HHHHHHHhcCCCCcEEEE-EcchHHH---hhhcc-
Q 041509 40 NAQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRRVEE---YKLSKKILGLDASHVEFV-IGDAQSL---LLSHF- 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~---~~~Ar~~~~~~~~~V~~~-~gda~e~---l~~l~- 109 (211)
+++.|+=++-+|+|-+|.. ||..+...+.+|.-++.|+.. .+.-+.+.+ ...+.++ ..+..++ +..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae--~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK--TIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh--hcCCcEEecCCHHHHHHHHHHHHh
Confidence 3456666623899998877 444443334467667776653 333333322 1223333 2343333 22222
Q ss_pred -CCccEEEEcCCcCcH--HHHHHHHHh---cCCCCcEEEEEe
Q 041509 110 -READFVLIDCNLENH--EGVLRAVQA---GNKPNGAVVVGY 145 (211)
Q Consensus 110 -~~fD~VfiD~~~~~y--~~~l~~~~~---~L~pgG~viv~d 145 (211)
..+|+||+|...+.+ .+.++++.+ ...|.-.+++.+
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs 359 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 359 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 269999999865533 223333333 344544555533
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.8 Score=33.54 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHHccCCCcEE--EEEeCChhHHHHHH---HHhcCC-CCcEEEEEc-chHHHhhhc---cCCccEEEEc
Q 041509 49 ANVANATTLALAAAAHQTGGRV--VCILRRVEEYKLSK---KILGLD-ASHVEFVIG-DAQSLLLSH---FREADFVLID 118 (211)
Q Consensus 49 Gtg~G~stl~la~a~~~~~g~v--~tiE~~~~~~~~Ar---~~~~~~-~~~V~~~~g-da~e~l~~l---~~~fD~VfiD 118 (211)
|=|-=..+++|++.... +..| |+.|..++..+... +|++.+ ...++++.| ||.++-... ..+||.|+-.
T Consensus 4 GeGdfSFs~sL~~~~~~-~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGS-ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eccchHHHHHHHHHcCC-CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 44445567788887653 4444 66666665555433 555522 233444444 555543322 4789999987
Q ss_pred CCcCc----------------HHHHHHHHHhcCCCCcEEEEEecCCCC-Ccee
Q 041509 119 CNLEN----------------HEGVLRAVQAGNKPNGAVVVGYNAFRK-GSWR 154 (211)
Q Consensus 119 ~~~~~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~-~~~~ 154 (211)
.++-. ...+++.+.++|+++|.|.|...--.+ ..|.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc
Confidence 54322 267888889999999998886643333 3453
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.66 E-value=14 Score=33.29 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=61.0
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE---cchHHHhhhc--cC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI---GDAQSLLLSH--FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~---gda~e~l~~l--~~ 110 (211)
...+.++||-. |+ ++|..++.+|++.. ...++++|.+++..+.|++. +. + .+.. .+..+.+..+ ..
T Consensus 182 ~~~~g~~VlV~-G~G~iG~~aiqlAk~~G--a~~vi~~d~~~~r~~~a~~~--Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 182 GVGPGSTVYIA-GAGPVGLAAAASAQLLG--AAVVIVGDLNPARLAQARSF--GC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHc--CC-e--EEecCCcccHHHHHHHHcCCC
Confidence 34556777667 54 56777777777652 23467778999888888763 22 2 2222 1333333322 24
Q ss_pred CccEEEEcCCcCc-----------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLEN-----------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~-----------y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|++|--..... -...++++.+.++++|.+++.-
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 6898874333211 1246788888899999988754
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=87.62 E-value=4.3 Score=34.47 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=25.4
Q ss_pred CCCeEEEE--ccccHHHHH--HHHHHHccCCCcEEEEEeCChhH
Q 041509 40 NAQLMVVA--CANVANATT--LALAAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 40 ~~~~VLEi--~Gtg~G~st--l~la~a~~~~~g~v~tiE~~~~~ 79 (211)
++.+++=+ +..|.|-|| ..||.++...+.+|.-||.|...
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~ 144 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRD 144 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 33455444 125566665 45777776667799999998654
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.61 E-value=17 Score=31.53 Aligned_cols=98 Identities=18% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~V 115 (211)
.++++||-..+.+.|..++.+|++. +. +|+.++.+++..+.+++. . ...-+.....+.. .+.++ .+.+|++
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~---G~~~v~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~-~~~~~~~~~~vd~v 235 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA---GASLVIASDPNPYRLELAKKM-G-ADVVINPREEDVV-EVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh-C-cceeeCcccccHH-HHHHHcCCCCCCEE
Confidence 4556666561245677888888875 45 788888888777766642 2 1111111222332 22222 3579998
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|-.... ....+.+.+.|+++|.++...
T Consensus 236 ld~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSGN---PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCCC---HHHHHHHHHHhccCCEEEEEc
Confidence 754332 234566677788889877654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=6.1 Score=32.29 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~ 110 (211)
..+.+|-+ |+ +|..+..+++.+...+.+|+.++.+++..+...+.++....++.++.+|..+. +... .+
T Consensus 5 ~~k~vlIt-G~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALIT-GA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34678888 64 55566777776665577999999998766555554443345788888886432 1111 35
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
+.|.++..+.
T Consensus 83 ~id~lv~~ag 92 (241)
T PRK07454 83 CPDVLINNAG 92 (241)
T ss_pred CCCEEEECCC
Confidence 7899997653
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.50 E-value=13 Score=31.55 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=56.5
Q ss_pred hCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+.+.||-. |. +.|..++.++.+. +.+++.++.+++..+.++.. +....+.....+..+.+... .+.+|
T Consensus 164 ~~~~~~vlI~-g~~~~iG~~~~~~~~~~---g~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (342)
T cd08266 164 LRPGETVLVH-GAGSGVGSAAIQIAKLF---GATVIATAGSEDKLERAKEL--GADYVIDYRKEDFVREVRELTGKRGVD 237 (342)
T ss_pred CCCCCEEEEE-CCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc--CCCeEEecCChHHHHHHHHHhCCCCCc
Confidence 4456778877 64 5677666666664 67899999998877766432 21111222222222222222 34789
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+++-.... ..++.+.+.++++|.++..
T Consensus 238 ~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 238 VVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred EEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 88844332 2455566677788887764
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=87.47 E-value=10 Score=31.22 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-cCC---CCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-GLD---ASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~~~---~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
|.=| | |+|..+..++..+...+.+|+.++.+++..+...+.. ... .-.+++...+..+.+ ...|+||+-.
T Consensus 3 I~II-G-G~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~----~~aDvVilav 76 (219)
T TIGR01915 3 IAVL-G-GTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAA----KRADVVILAV 76 (219)
T ss_pred EEEE-c-CCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHH----hcCCEEEEEC
Confidence 5556 5 3455555666665554568888999988765544432 111 111223333433332 3579999998
Q ss_pred CcCcHHHHHHHHHhcCC
Q 041509 120 NLENHEGVLRAVQAGNK 136 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~ 136 (211)
......+.++.+.+.+.
T Consensus 77 p~~~~~~~l~~l~~~l~ 93 (219)
T TIGR01915 77 PWDHVLKTLESLRDELS 93 (219)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 87777777777766554
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.36 E-value=2.3 Score=36.91 Aligned_cols=96 Identities=21% Similarity=0.136 Sum_probs=58.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcE--EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGR--VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~--v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+|+=+ | .|..+-++|+.++..+-. ++..|.+....+.|.+ -+..+. ..+... .......|+||+.-+
T Consensus 5 ~v~Iv-G--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~--lgv~d~----~~~~~~--~~~~~~aD~VivavP 73 (279)
T COG0287 5 KVGIV-G--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE--LGVIDE----LTVAGL--AEAAAEADLVIVAVP 73 (279)
T ss_pred EEEEE-C--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh--cCcccc----cccchh--hhhcccCCEEEEecc
Confidence 45555 5 677778888888764444 4555555554444432 122111 111110 112456899999999
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.....++++++.+.|++ |.+++ |-...+.
T Consensus 74 i~~~~~~l~~l~~~l~~-g~iv~-Dv~S~K~ 102 (279)
T COG0287 74 IEATEEVLKELAPHLKK-GAIVT-DVGSVKS 102 (279)
T ss_pred HHHHHHHHHHhcccCCC-CCEEE-ecccccH
Confidence 98899999999998987 66654 6444443
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=87.31 E-value=3.8 Score=34.77 Aligned_cols=91 Identities=20% Similarity=0.098 Sum_probs=52.4
Q ss_pred HHHHHHHHHccCCCcEEEEEeCChhHHHHHHH-Hhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHH
Q 041509 54 ATTLALAAAAHQTGGRVVCILRRVEEYKLSKK-ILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRA 130 (211)
Q Consensus 54 ~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~-~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~ 130 (211)
+.+..|+++ +..|+-+..+ +.++..++ -+. .......+..-.+.+-... .+++|+||+-....+..+.++.
T Consensus 5 ~~a~~L~~~----G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~ 78 (293)
T TIGR00745 5 LYGAYLARA----GHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTEEAAAL 78 (293)
T ss_pred HHHHHHHhC----CCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHHHHHHH
Confidence 334455543 5679999886 33433332 121 1112222211111111121 3589999998776677888999
Q ss_pred HHhcCCCCcEEEEEecCCCC
Q 041509 131 VQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 131 ~~~~L~pgG~viv~dn~~~~ 150 (211)
+.+.+.++..++...|-+..
T Consensus 79 l~~~l~~~~~iv~~qNG~g~ 98 (293)
T TIGR00745 79 LLPLIGKNTKVLFLQNGLGH 98 (293)
T ss_pred hHhhcCCCCEEEEccCCCCC
Confidence 99999887777776776643
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=5.2 Score=33.12 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--h----hhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--L----LSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l----~~l---~~ 110 (211)
+.+++|-. | ++|..+.++++.+...+.+|+.++.+++..+...+.+.....++.++.+|..+. + ... .+
T Consensus 11 ~~k~ilIt-G-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVT-G-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEE-C-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45778888 6 455566777777765577999999998877766665553345688888887542 1 111 35
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.|+..+.
T Consensus 89 ~id~vi~~ag 98 (259)
T PRK08213 89 HVDILVNNAG 98 (259)
T ss_pred CCCEEEECCC
Confidence 7899987653
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=16 Score=31.51 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=56.1
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||=. | .+.|..++.+|+++. ....+++++.+++..+.+++. +...-+.....+..+.+......+|++
T Consensus 157 ~~~~g~~vlI~-g~g~vG~~~~~~a~~~~-G~~~v~~~~~~~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 157 GPTEQDVALIY-GAGPVGLTIVQVLKGVY-NVKAVIVADRIDERLALAKES--GADWVINNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHh--CCcEEecCccccHHHHHhcCCCCCCEE
Confidence 34566777777 5 345555666666421 124688999999988888753 211112222223333333212234554
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+... ...+....+.|+++|.++...
T Consensus 233 -id~~g~--~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 233 -IDAACH--PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred -EECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 554332 234666677778889887653
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=3.5 Score=37.07 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHh--hCCCCeEEEEcc-ccHHHHHHHH---HHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc----h
Q 041509 32 ISALAA--GNNAQLMVVACA-NVANATTLAL---AAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD----A 101 (211)
Q Consensus 32 L~~l~~--~~~~~~VLEi~G-tg~G~stl~l---a~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd----a 101 (211)
|..+.. +.+..+|.||+| +|+|-+++++ +.++. .++.+.=||.....-....+.+.-..+++-+..-+ +
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~ 126 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQA 126 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 555544 677788999944 8899998886 33333 36777777765544332222222112344333322 2
Q ss_pred HHHhhhc--cCCccEEEEcCCcCcH---------------------HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSLLLSH--FREADFVLIDCNLENH---------------------EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~l~~l--~~~fD~VfiD~~~~~y---------------------~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+.+..+ .+.+|+|++|.-...+ ...++.+...++..++.+++-|-.
T Consensus 127 l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQv 196 (349)
T PRK09354 127 LEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQI 196 (349)
T ss_pred HHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEee
Confidence 2333333 4689999999622111 122444555566677777776644
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.09 E-value=13 Score=32.13 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-. | .+.|..++.+|++. +.+|+.++.+++..+.+++ +. ...-+.....+..+.+..+ +.+|++
T Consensus 160 ~~~~~~~vlV~-g~g~iG~~~~~~a~~~---G~~vi~~~~~~~~~~~~~~-~g-~~~~i~~~~~~~~~~~~~~-~~~d~v 232 (333)
T cd08296 160 GAKPGDLVAVQ-GIGGLGHLAVQYAAKM---GFRTVAISRGSDKADLARK-LG-AHHYIDTSKEDVAEALQEL-GGAKLI 232 (333)
T ss_pred CCCCCCEEEEE-CCcHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHH-cC-CcEEecCCCccHHHHHHhc-CCCCEE
Confidence 44556778777 5 35666666677664 5689999999988888854 22 1111222222333333333 468988
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+.. ....++.+.+.|+++|.++...
T Consensus 233 i-~~~g--~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 L-ATAP--NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred E-ECCC--chHHHHHHHHHcccCCEEEEEe
Confidence 7 4321 1246677777888889877654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=10 Score=34.07 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=65.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh-HHHHHHHHhcCCCCcEEEEEc-
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE-EYKLSKKILGLDASHVEFVIG- 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~-~~~~Ar~~~~~~~~~V~~~~g- 99 (211)
+.-.|...+|-..++...+.+..+=+ ++|++...+.++ .+. ++.+|+..+..-. ......+.+....-.+.++..
T Consensus 46 r~~~p~~~~Le~~lA~l~g~~~~~~~-~sG~aai~~~~~-~l~-~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 122 (377)
T PRK07671 46 RTGNPTRAALEELIAVLEGGHAGFAF-GSGMAAITAVMM-LFS-SGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS 122 (377)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEe-CCHHHHHHHHHH-HhC-CCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC
Confidence 34566677777777765555554446 676654433332 333 4678887765322 333333333322223444433
Q ss_pred chHHHhhhccCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|..++...+..+..+|++.... .+..+..+.+. ..|.++++|+++..
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~----~~g~~lvvD~a~~~ 175 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAK----EKGLLTIVDNTFMT 175 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH----HcCCEEEEECCCCc
Confidence 4444434334567899986432 13344444443 35788888998754
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=87.03 E-value=8.3 Score=33.22 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=54.0
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCCh----hHHHHHHHHhcCCCCcEEEEEc---chHHHhhh
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRV----EEYKLSKKILGLDASHVEFVIG---DAQSLLLS 107 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~----~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~ 107 (211)
...+.++||=. | .++|..++.+|.+. +.+++.+-.++ +..+.+++ + +...-+..... +..+.+..
T Consensus 143 ~~~~g~~vlI~-g~~g~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~i~~ 216 (341)
T cd08290 143 KLQPGDWVIQN-GANSAVGQAVIQLAKLL---GIKTINVVRDRPDLEELKERLKA-L-GADHVLTEEELRSLLATELLKS 216 (341)
T ss_pred ccCCCCEEEEc-cchhHHHHHHHHHHHHc---CCeEEEEEcCCCcchhHHHHHHh-c-CCCEEEeCcccccccHHHHHHH
Confidence 34567788877 5 57888888888876 45665554443 34555543 2 21111111111 23333332
Q ss_pred c-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ .+.+|+|+ |+... ..+..+.+.|+++|.++.+.
T Consensus 217 ~~~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 217 APGGRPKLAL-NCVGG---KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred HcCCCceEEE-ECcCc---HhHHHHHHHhCCCCEEEEEe
Confidence 2 22699887 55433 23445667788888877653
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=86.98 E-value=20 Score=31.31 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCC-CcEEEEEeCChhHH-HHHHHHhcCCCCcEEEEE-cchHHHhhhccCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQT-GGRVVCILRRVEEY-KLSKKILGLDASHVEFVI-GDAQSLLLSHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~-~g~v~tiE~~~~~~-~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD~V 115 (211)
.+.++|+-+ |+ |-.+..++..+... ..+|+.++.+++.. +.|++ +.. ..+. .+..+. -...|+|
T Consensus 176 l~~~~V~Vi-Ga--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~-----~~~~~~~~~~~----l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVI-GA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG-----NAVPLDELLEL----LNEADVV 242 (311)
T ss_pred ccCCEEEEE-Cc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC-----eEEeHHHHHHH----HhcCCEE
Confidence 367889999 87 55555555555432 35799999998765 44443 221 1222 122222 2458999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|.-...+.+.+.++.+..... ++..+++|-..++
T Consensus 243 i~at~~~~~~~~~~~~~~~~~-~~~~~viDlavPr 276 (311)
T cd05213 243 ISATGAPHYAKIVERAMKKRS-GKPRLIVDLAVPR 276 (311)
T ss_pred EECCCCCchHHHHHHHHhhCC-CCCeEEEEeCCCC
Confidence 988776666444555544332 2334555866544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.89 E-value=11 Score=33.64 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=57.5
Q ss_pred hCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEc---chHHHhhhc--cC
Q 041509 38 GNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIG---DAQSLLLSH--FR 110 (211)
Q Consensus 38 ~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~l--~~ 110 (211)
..+.++||-. | .+.|..++.+|++. +. +|++++.+++..+.+++. . ...-+..... +..+.+.++ ..
T Consensus 201 ~~~g~~VlV~-g~g~vG~~ai~lA~~~---G~~~vi~~~~~~~~~~~~~~~-g-~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 201 FRPGAYVVVY-GAGPIGLAAIALAKAA---GASKVIAFEISEERRNLAKEM-G-ADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHc-C-CCEEEcccccccccHHHHHHHhcCCC
Confidence 4456777776 4 45666667777765 45 799999998877776652 2 2111111111 222222222 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+|+ |+.- .....++.+.+.|+++|.++...
T Consensus 275 gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQV-EAAG-APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEEC
Confidence 699776 6532 22345666677778889887643
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=86.82 E-value=14 Score=30.78 Aligned_cols=100 Identities=20% Similarity=0.141 Sum_probs=59.0
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.+.|+-. |+ +.|..++.++.+. +.+|+.++.+++..+.+++ + +...-+.....+..+.+... ...
T Consensus 135 ~~~~~~~~vli~-g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (323)
T cd08241 135 ARLQPGETVLVL-GAAGGVGLAAVQLAKAL---GARVIAAASSEEKLALARA-L-GADHVIDYRDPDLRERVKALTGGRG 208 (323)
T ss_pred cCCCCCCEEEEE-cCCchHHHHHHHHHHHh---CCEEEEEeCCHHHHHHHHH-c-CCceeeecCCccHHHHHHHHcCCCC
Confidence 344566788888 75 5777777777764 5679999999888777754 2 22111222222333333322 346
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+.-. ...+.+.+.++++|.++.+.
T Consensus 209 ~d~v~-~~~g~---~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 209 VDVVY-DPVGG---DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred cEEEE-ECccH---HHHHHHHHhhccCCEEEEEc
Confidence 99887 43222 34555667778888876543
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=6.2 Score=32.17 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+.+|-+ |+ +|..+..+++.+...+.+|+.++.+++..+.....+.....++.++..|..+. +.. ..+
T Consensus 6 ~~~~vlVt-G~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALIT-GA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEE-cC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34678888 64 56677778777665678999999998766554444443345788888886332 111 135
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
+.|.|+..+
T Consensus 84 ~id~vi~~a 92 (239)
T PRK07666 84 SIDILINNA 92 (239)
T ss_pred CccEEEEcC
Confidence 789998765
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.76 E-value=9 Score=32.81 Aligned_cols=98 Identities=16% Similarity=0.052 Sum_probs=58.9
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH---HHhhhccC
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ---SLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~---e~l~~l~~ 110 (211)
+...+.++||-+ |+| +|..++.+|++. +.+ ++.++.+++..+.+++. +.. .++..+.. +......+
T Consensus 155 ~~~~~g~~vlI~-g~g~vg~~~~~la~~~---G~~~v~~~~~~~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 155 LGIKPGDSVLVF-GAGPIGLLLAQLLKLN---GASRVTVAEPNEEKLELAKKL--GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh--CCe---EEecCCCCCHHHHHHhcCC
Confidence 444567888888 654 577777787775 444 88999999888877542 211 22222211 11111145
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|++|--... ...+..+.+.|+++|.++.+.
T Consensus 226 ~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATGV---PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence 79999843222 245666677778889887654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=10 Score=32.45 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=58.6
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+.+.|+=. | ..+|..++.+|++. +.++++++.+++..+.+++ + +....+.....+..+.+..+ ...+|
T Consensus 138 ~~~g~~vlI~-g~~g~ig~~~~~lak~~---G~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~d 211 (327)
T PRK10754 138 IKPDEQFLFH-AAAGGVGLIACQWAKAL---GAKLIGTVGSAQKAQRAKK-A-GAWQVINYREENIVERVKEITGGKKVR 211 (327)
T ss_pred CCCCCEEEEE-eCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-C-CCCEEEcCCCCcHHHHHHHHcCCCCeE
Confidence 4456677655 4 56888888888875 6789999999888777754 2 22111211112232333222 34689
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++ |+... .......+.++++|.++.+-
T Consensus 212 ~vl-~~~~~---~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 212 VVY-DSVGK---DTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred EEE-ECCcH---HHHHHHHHHhccCCEEEEEc
Confidence 776 55322 34556677788889887654
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.64 E-value=5.2 Score=31.36 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc-CcHHHHHHH
Q 041509 52 ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL-ENHEGVLRA 130 (211)
Q Consensus 52 ~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-~~y~~~l~~ 130 (211)
.|..+..+|+.+...+-+|+..|++++..+...+. + -....+..+.... .|+||+--.. ....+.+..
T Consensus 9 lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--g-----~~~~~s~~e~~~~----~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 9 LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--G-----AEVADSPAEAAEQ----ADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp -SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--T-----EEEESSHHHHHHH----BSEEEE-SSSHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--h-----hhhhhhhhhHhhc----ccceEeecccchhhhhhhhh
Confidence 46777777777765578999999999877665543 1 2344566666553 4999987544 355667776
Q ss_pred --HHhcCCCCcEEEEEecCCC
Q 041509 131 --VQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 131 --~~~~L~pgG~viv~dn~~~ 149 (211)
+.+.|++ |.++|-.+...
T Consensus 78 ~~i~~~l~~-g~iiid~sT~~ 97 (163)
T PF03446_consen 78 ENILAGLRP-GKIIIDMSTIS 97 (163)
T ss_dssp TTHGGGS-T-TEEEEE-SS--
T ss_pred hHHhhcccc-ceEEEecCCcc
Confidence 7777876 66666333333
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.4 Score=32.40 Aligned_cols=105 Identities=17% Similarity=-0.009 Sum_probs=66.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-c-CCCCcEEEEEcchHHHhhhccCC
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-G-LDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~-~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
.++...+..+.+|+ |+|-|-.-+..++-. --.-+++|.||-....+|-.. + +....++|..-|.-.+- ...
T Consensus 66 Sll~~n~~GklvDl-GSGDGRiVlaaar~g---~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d---l~d 138 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDL-GSGDGRIVLAAARCG---LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD---LRD 138 (199)
T ss_pred HHccCCCCCcEEec-cCCCceeehhhhhhC---CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc---ccc
Confidence 44455666789999 999998555444321 135689999999998888654 3 77788888888876542 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|-.+++=+...-..+....+..-+..+-.++-+-
T Consensus 139 y~~vviFgaes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred cceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 6666665655444444444443344444444433
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.60 E-value=9.3 Score=33.05 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CC--C--------CcEEEEEcchHHHhhhc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LD--A--------SHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~--~--------~~V~~~~gda~e~l~~l 108 (211)
++|.=| |+|. .+..+|..+...+-+|+.+|.+++.++.+++.+. +. . .++++ ..|..+.
T Consensus 5 ~~I~vI-GaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---- 76 (311)
T PRK06130 5 QNLAII-GAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---- 76 (311)
T ss_pred cEEEEE-CCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----
Confidence 567778 7764 3444444443335689999999999888876532 11 1 11222 2233322
Q ss_pred cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
-...|+||+..... .....+..+.+.+++ +.+++
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~-~~ii~ 112 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDP-DTIFA 112 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCC-CcEEE
Confidence 24579999876544 256778888776664 55554
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=86.55 E-value=16 Score=31.00 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=56.7
Q ss_pred CCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 41 AQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.++||=. | .+.|..++.+|++. +.+|++++.+++..+.+++ +. . +.+--......+.+..+ ...+|.|+
T Consensus 147 ~~~vlI~-g~~g~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~-~~v~~~~~~~~~~~~~~~~~~~d~vl- 218 (326)
T cd08289 147 QGPVLVT-GATGGVGSLAVSILAKL---GYEVVASTGKADAADYLKK-LG-A-KEVIPREELQEESIKPLEKQRWAGAV- 218 (326)
T ss_pred CCEEEEE-cCCchHHHHHHHHHHHC---CCeEEEEecCHHHHHHHHH-cC-C-CEEEcchhHHHHHHHhhccCCcCEEE-
Confidence 4578777 5 46777777777765 5689999999988877754 22 1 11111111111222222 35689876
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+-.. ..++...+.|+++|.++..-
T Consensus 219 d~~g~---~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPVGG---KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECCcH---HHHHHHHHHhhcCCEEEEEe
Confidence 65432 34666777788889887653
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=86.52 E-value=15 Score=31.18 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=56.3
Q ss_pred hCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+...||=. |+ +.|..++.+|++. +.+++.+..+++..+.+++ + +...-+.....+..+.+..+ ...+|
T Consensus 136 ~~~~~~vlI~-g~~~~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (323)
T cd05282 136 LPPGDWVIQN-AANSAVGRMLIQLAKLL---GFKTINVVRRDEQVEELKA-L-GADEVIDSSPEDLAQRVKEATGGAGAR 209 (323)
T ss_pred CCCCCEEEEc-ccccHHHHHHHHHHHHC---CCeEEEEecChHHHHHHHh-c-CCCEEecccchhHHHHHHHHhcCCCce
Confidence 3456677766 54 5888888888875 6788888888877777753 2 22111111111222222222 34799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.|+ |+.... ......+.|+++|.++..
T Consensus 210 ~vl-~~~g~~---~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 210 LAL-DAVGGE---SATRLARSLRPGGTLVNY 236 (323)
T ss_pred EEE-ECCCCH---HHHHHHHhhCCCCEEEEE
Confidence 887 544331 234556678888887754
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.46 E-value=3.7 Score=35.35 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
+.++||-. | |+|+.+.++++.+...+.+|+.+..+++.......... +...+++++.+|..+. +......+|.|
T Consensus 4 ~~k~vlVt-G-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVT-G-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEE-C-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 35778888 5 57888888888776656788887777654433322222 2235789999998653 23333468998
Q ss_pred EEcCC
Q 041509 116 LIDCN 120 (211)
Q Consensus 116 fiD~~ 120 (211)
|..+.
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 87653
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=86.41 E-value=13 Score=31.74 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=58.4
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc-cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH-FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l-~~~f 112 (211)
...+.++||=. | .++|..++.+|.+. +.+|+.+..+++..+.+++ +. . +.+ .....+..+.+..+ .+.+
T Consensus 136 ~~~~~~~vlI~-ga~g~ig~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~-~~v~~~~~~~~~~~~~~~~~~~v 208 (329)
T cd08250 136 EMKSGETVLVT-AAAGGTGQFAVQLAKLA---GCHVIGTCSSDEKAEFLKS-LG-C-DRPINYKTEDLGEVLKKEYPKGV 208 (329)
T ss_pred CCCCCCEEEEE-eCccHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHH-cC-C-ceEEeCCCccHHHHHHHhcCCCC
Confidence 44567778777 5 56777777777774 6789999988887777754 32 1 111 11111222223222 3468
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++| |+... ..+..+.+.|+++|.++.+
T Consensus 209 d~v~-~~~g~---~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 209 DVVY-ESVGG---EMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred eEEE-ECCcH---HHHHHHHHHhccCCeEEEE
Confidence 9887 43322 4566667778888887754
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=86.37 E-value=3.3 Score=36.89 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=51.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH--hhhccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL--LLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~--l~~l~~~fD~ 114 (211)
.++++||-+ | |+|+.+.++++.+-..+ -+|++++.+++.......... ....+++++.+|..+. +......+|.
T Consensus 12 ~~~~~VlVT-G-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 12 IKPLTICMI-G-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred ccCcEEEEE-C-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 356789987 4 68999999998886543 589999987654322111100 1234699999998643 2223346899
Q ss_pred EEEcC
Q 041509 115 VLIDC 119 (211)
Q Consensus 115 VfiD~ 119 (211)
||--+
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 88655
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=86.31 E-value=7.3 Score=33.18 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=54.6
Q ss_pred EEEEccccHHHHHHHHHHHccCCC----cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 44 MVVACANVANATTLALAAAAHQTG----GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~----g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
|.=| | .|..+..++.++...+ ..|+.++.+++..+.+.+.+. .++. ..+..+.+ ...|+||+-.
T Consensus 3 I~iI-G--~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~----g~~~-~~~~~~~~----~~aDiVilav 70 (273)
T PRK07680 3 IGFI-G--TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP----GIHV-AKTIEEVI----SQSDLIFICV 70 (273)
T ss_pred EEEE-C--ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC----CeEE-ECCHHHHH----HhCCEEEEec
Confidence 4445 5 4666666666654423 268999999877655544321 2332 34554443 3579999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
......++++.+.+.++++..++
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 66667788888888887755444
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.29 E-value=14 Score=33.06 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhH-HHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCccEEE
Q 041509 40 NAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEE-YKLSKKILGLDASHVEFVI-GDAQSLLLSHFREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~-~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD~Vf 116 (211)
+.+.||-. | .+.|..++.+|++. +.+|+.++.+++. .+.+++ + +. +. ++. .+... +....+.+|+||
T Consensus 178 ~g~~VlV~-G~G~vG~~avq~Ak~~---Ga~Vi~~~~~~~~~~~~a~~-l-Ga-~~--~i~~~~~~~-v~~~~~~~D~vi 247 (375)
T PLN02178 178 SGKRLGVN-GLGGLGHIAVKIGKAF---GLRVTVISRSSEKEREAIDR-L-GA-DS--FLVTTDSQK-MKEAVGTMDFII 247 (375)
T ss_pred CCCEEEEE-cccHHHHHHHHHHHHc---CCeEEEEeCChHHhHHHHHh-C-CC-cE--EEcCcCHHH-HHHhhCCCcEEE
Confidence 46777766 4 45677777777775 5689999887654 445533 2 21 11 111 12122 222224689887
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
--... ...++.+.+.++++|.++..-
T Consensus 248 d~~G~---~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVSA---EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCCc---HHHHHHHHHhhcCCCEEEEEc
Confidence 43322 234666777788899887654
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.73 Score=41.40 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHH-------HHHHHhc--CC-CC
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYK-------LSKKILG--LD-AS 92 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~-------~Ar~~~~--~~-~~ 92 (211)
..+++..=+.+.++...+++.|.|=+ .|||..-+..| .-|+.|++-|+|-.++. -.+.|++ +. ..
T Consensus 191 SmDAeLSli~AN~Amv~pGdivyDPF-VGTGslLvsaa----~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~ 265 (421)
T KOG2671|consen 191 SMDAELSLIMANQAMVKPGDIVYDPF-VGTGSLLVSAA----HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQ 265 (421)
T ss_pred ccchhHHHHHhhhhccCCCCEEecCc-cccCceeeehh----hhcceeeccccchheeecccCCCcchhHhHHHhCCcch
Confidence 35555555666778888899999984 78886433222 23899999999988776 2456776 43 44
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+.++.+|...-.-.-...||.|+.|.
T Consensus 266 fldvl~~D~sn~~~rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 266 FLDVLTADFSNPPLRSNLKFDAIVCDP 292 (421)
T ss_pred hhheeeecccCcchhhcceeeEEEeCC
Confidence 588888988653222267899999994
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=86.17 E-value=14 Score=30.71 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=57.4
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++|+=. | .+.|..++.++.+. +.+|+.+..+++..+.+++ +. ....+.....+..+.+..+ ...+
T Consensus 136 ~~~~~~~vlv~-g~~~~ig~~~~~~~~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
T cd05276 136 GLKAGETVLIH-GGASGVGTAAIQLAKAL---GARVIATAGSEEKLEACRA-LG-ADVAINYRTEDFAEEVKEATGGRGV 209 (323)
T ss_pred CCCCCCEEEEE-cCcChHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH-cC-CCEEEeCCchhHHHHHHHHhCCCCe
Confidence 44566778877 6 46788777777764 6789999999888777744 22 1111111112222322222 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++|-... . ..+....+.++++|.++.+
T Consensus 210 d~vi~~~g-~---~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 210 DVILDMVG-G---DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred EEEEECCc-h---HHHHHHHHhhccCCEEEEE
Confidence 98874333 2 2255566677888876654
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=16 Score=32.03 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+.||-. |++.| .+..+++.+...+.+|+.++.+++.++...+.++....++.++..|..+. +.. ..+
T Consensus 7 ~~k~vlIT-Gas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVIT-GASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEE-CCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888 65433 34556555544578999999998877766666653335678888885432 111 136
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 8999987654
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=86.08 E-value=12 Score=32.64 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH---HHhhhc--cCCcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ---SLLLSH--FREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~---e~l~~l--~~~fD 113 (211)
+.++||=....++|..++.+|++. +. +|+.++.+++..+.+++ +. ...-+.....+.. +.+..+ ...+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~~~~~~~~~~~~~-~g-~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA---GARRVIVIDGSPERLELARE-FG-ADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH-cC-CCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 566777772255677777777775 45 89999999988877753 22 2111111111111 122222 34799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++|-.... ...++...+.|+++|.++..-
T Consensus 252 ~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 252 VVIEASGH---PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence 88743322 235666677888889887643
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=86.03 E-value=16 Score=29.26 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++++=+ |. +|..+..++..+...+.+|+.+..+++.++...+.+. .....+.....+-.+-+...-...|+|+.
T Consensus 26 l~~~~vlVl-Gg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 26 LKGKTAVVL-GG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 355788888 63 2333334444333335689999998877665555443 12222333222112222222356899988
Q ss_pred cCCcCcH
Q 041509 118 DCNLENH 124 (211)
Q Consensus 118 D~~~~~y 124 (211)
......+
T Consensus 104 at~~g~~ 110 (194)
T cd01078 104 AGAAGVE 110 (194)
T ss_pred CCCCCce
Confidence 7766554
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=9.7 Score=31.35 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=51.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh------hh---
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL------LS--- 107 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l------~~--- 107 (211)
...+.+++|-+ |. +|..+..+++.+...+.+|+.++.+++..+...+.... .+++++.+|..+.- ..
T Consensus 7 ~~~~~~~vlIt-Ga-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVT-GG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--AKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEe-CC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 34566889988 65 45566777766655678999999998766544433332 26788888865321 11
Q ss_pred ccCCccEEEEcC
Q 041509 108 HFREADFVLIDC 119 (211)
Q Consensus 108 l~~~fD~VfiD~ 119 (211)
..+++|.|+..+
T Consensus 83 ~~~~~d~vi~~a 94 (264)
T PRK12829 83 RFGGLDVLVNNA 94 (264)
T ss_pred HhCCCCEEEECC
Confidence 125789998765
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=9.3 Score=34.70 Aligned_cols=104 Identities=18% Similarity=0.121 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH-HHHHHHhc--CCC-CcEEEEEcchHHHhh
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY-KLSKKILG--LDA-SHVEFVIGDAQSLLL 106 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~-~~Ar~~~~--~~~-~~V~~~~gda~e~l~ 106 (211)
+|..+........||-+ +=..|..|++++.. . ++++ .|.-.. .-.++|++ +.. +.++++.. .+-
T Consensus 35 ll~~~~~~~~~~~~~i~-nd~fGal~~~l~~~-~-----~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~-- 102 (378)
T PRK15001 35 LLQQLDDTEIRGPVLIL-NDAFGALSCALAEH-K-----PYSI-GDSYISELATRENLRLNGIDESSVKFLDS--TAD-- 102 (378)
T ss_pred HHHHHhhcccCCCEEEE-cCchhHHHHHHHhC-C-----CCee-ehHHHHHHHHHHHHHHcCCCcccceeecc--ccc--
Confidence 44454443222379999 99999999999842 1 1233 333333 33456666 443 34666532 222
Q ss_pred hccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 107 SHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+.+.+|+|++=-+|. .....+..+.+.|.|++.+++..+.
T Consensus 103 -~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 103 -YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred -ccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 345799999988876 3466788888899998887776653
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=85.82 E-value=15 Score=33.41 Aligned_cols=124 Identities=22% Similarity=0.164 Sum_probs=68.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEc-
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIG- 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~g- 99 (211)
+.-.|...+|-..++...+.+..+=. ++|+......+...+. ++.+|++.+... .......+.++...-.+.++..
T Consensus 66 r~~~p~~~~le~~lA~l~g~~~al~~-~sG~~Ai~~~l~all~-~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~ 143 (403)
T PRK07810 66 RYGNPTVSMFEERLRLIEGAEACFAT-ASGMSAVFTALGALLG-AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE 143 (403)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEE-CChHHHHHHHHHHHhC-CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC
Confidence 34556666777777777777777777 6666655444433343 367787665321 2223333333312234555533
Q ss_pred chHHHhhhccCCccEEEEcCCcC------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|..++...+....++|++..... +..++.+.+.+ .|.++++||++..+
T Consensus 144 d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~----~g~~vivD~a~a~~ 197 (403)
T PRK07810 144 DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHA----AGAKVVLDNVFATP 197 (403)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHH----cCCEEEEECCCCcc
Confidence 33333333345678999864321 33444444443 57888889987654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=85.75 E-value=9.2 Score=34.73 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeC-ChhHHHHHHHHhcCCCCcEEEEEc-
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILR-RVEEYKLSKKILGLDASHVEFVIG- 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~-~~~~~~~Ar~~~~~~~~~V~~~~g- 99 (211)
+.-.|.+..+=..++..-++..++=. .+|.+..+..+...+++ +.+|+..+. =.......++.+....-.++++-.
T Consensus 51 R~gnPt~~~le~~la~Le~g~~a~~~-~SGmaAi~~~l~~ll~~-Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~ 128 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGGEDALLF-SSGMAAISAALLALLKP-GDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPT 128 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT-SEEEEE-SSHHHHHHHHHHHHS-T-TBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTT
T ss_pred ccccccHHHHHHHHHHhhcccceeec-cchHHHHHHHHHhhccc-CCceEecCCccCcchhhhhhhhcccCcEEEEeCch
Confidence 34556666666666666667777777 67777776666655654 788877764 333444555444432334555544
Q ss_pred chHHHhhhccCCccEEEEcCCcC------cHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE------NHEGVLRAVQAGNKPNG-AVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~------~y~~~l~~~~~~L~pgG-~viv~dn~~~~ 150 (211)
|..++-..+.+..++||+...-. +...+.+.+.+ .| .++++||.+-.
T Consensus 129 d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~----~g~~~~vVDnT~at 182 (386)
T PF01053_consen 129 DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKE----HGDILVVVDNTFAT 182 (386)
T ss_dssp SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHH----TTT-EEEEECTTTH
T ss_pred hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHH----hCCceEEeeccccc
Confidence 33444333467899999986432 44555555544 56 89999998854
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=5.8 Score=36.47 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC--------CcEEEEEcchHHHhhhccCC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA--------SHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~--------~~V~~~~gda~e~l~~l~~~ 111 (211)
++.+|--| | .||.++-+|..+.. +-+|+++|++++.++..++...... ....+...+..+. -..
T Consensus 5 ~~mkI~vI-G--lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~----~~~ 76 (425)
T PRK15182 5 DEVKIAII-G--LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEK----IKE 76 (425)
T ss_pred CCCeEEEE-C--cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHH----HcC
Confidence 34456555 4 68898998888865 5799999999998877663221000 0001111121222 245
Q ss_pred ccEEEEcCCcC-------cH---HHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 112 ADFVLIDCNLE-------NH---EGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 112 fD~VfiD~~~~-------~y---~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.|++|+.-+.+ +. ....+.+.+.|++ |.++|......++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~-g~lVI~~STv~pg 125 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR-GDIVVYESTVYPG 125 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC-CCEEEEecCCCCc
Confidence 78888753321 22 3334566777887 5666756666666
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.1 Score=37.52 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
++|.-| | |.|..+-++|.++...+..|+.+|.++. .+..+. ....|+||+..+.
T Consensus 99 ~~I~Ii-G-G~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~----~~~aDlVilavP~ 152 (374)
T PRK11199 99 RPVVIV-G-GKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDI----LADAGMVIVSVPI 152 (374)
T ss_pred ceEEEE-c-CCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHH----HhcCCEEEEeCcH
Confidence 567777 6 4677788888888765678999998631 122222 2357999998887
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
....+.++.+.+ ++| |.+++ |+...+
T Consensus 153 ~~~~~~~~~l~~-l~~-~~iv~-Dv~SvK 178 (374)
T PRK11199 153 HLTEEVIARLPP-LPE-DCILV-DLTSVK 178 (374)
T ss_pred HHHHHHHHHHhC-CCC-CcEEE-ECCCcc
Confidence 777888888877 766 66554 765443
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.58 E-value=21 Score=30.91 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=54.6
Q ss_pred CeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHH-HHHHhc-C--CCCcEEEEE-cchHHHhhhccCCccEE
Q 041509 42 QLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKL-SKKILG-L--DASHVEFVI-GDAQSLLLSHFREADFV 115 (211)
Q Consensus 42 ~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~-Ar~~~~-~--~~~~V~~~~-gda~e~l~~l~~~fD~V 115 (211)
.+|.-| |+|. |+.....+... ... +|+.+|++++.++- +....+ . .....++.. +|..+ + ..-|+|
T Consensus 3 ~KI~VI-GaG~vG~~ia~~la~~-~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~----~~aDiV 74 (307)
T PRK06223 3 KKISII-GAGNVGATLAHLLALK-ELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-I----AGSDVV 74 (307)
T ss_pred CEEEEE-CCCHHHHHHHHHHHhC-CCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-H----CCCCEE
Confidence 468888 8877 76544433222 113 99999999886532 111112 1 112234432 44432 2 457999
Q ss_pred EEcCCcC----------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 116 LIDCNLE----------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 116 fiD~~~~----------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++....+ .+.++.+.+.+.. |.+.+++..|..
T Consensus 75 ii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 75 VITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9875321 2455666666655 567788877754
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=6.4 Score=36.76 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc-CcHHHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL-ENHEGVLR 129 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-~~y~~~l~ 129 (211)
|.|..+..||..+...+-+|+..|.+++..+...+........++ ...+..+.+..+ ...|+|++-... ....+.++
T Consensus 8 GLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~-~~~s~~e~v~~l-~~~d~Iil~v~~~~~v~~vi~ 85 (470)
T PTZ00142 8 GLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVK-GYHTLEELVNSL-KKPRKVILLIKAGEAVDETID 85 (470)
T ss_pred eEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcce-ecCCHHHHHhcC-CCCCEEEEEeCChHHHHHHHH
Confidence 355666667777655566999999999987766553221011222 244555655432 356877776433 35567788
Q ss_pred HHHhcCCCCcEEEE-EecCCCCCc------eecCCCcEEEeecCCcEEEEEEec
Q 041509 130 AVQAGNKPNGAVVV-GYNAFRKGS------WRSSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 130 ~~~~~L~pgG~viv-~dn~~~~~~------~~~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
.+.+.|.+| .+++ +-|...... ....++..+=.|+..|..-++..+
T Consensus 86 ~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 86 NLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred HHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC
Confidence 888888875 4444 223332211 123556666667666655444444
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.49 E-value=6 Score=36.09 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=47.1
Q ss_pred CeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccEEEEc
Q 041509 42 QLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~VfiD 118 (211)
++||-| ||| .|..+++...+ ...++|+..|.+++..+.+.....+ +++.+.=|+.+. +..+-..+|+|+.-
T Consensus 2 ~~ilvi-GaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVI-GAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEE-CCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEe
Confidence 568999 764 45444443322 2248999999999988888766442 677777776544 33344566888765
Q ss_pred CC
Q 041509 119 CN 120 (211)
Q Consensus 119 ~~ 120 (211)
++
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 44
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.31 E-value=10 Score=33.29 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=59.9
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE--EEcchHHHhhhc----cC
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF--VIGDAQSLLLSH----FR 110 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~--~~gda~e~l~~l----~~ 110 (211)
..+.++||-+ |+ +.|..++.+|++.. ...+++++.+++..+.+++. . ....+.+ ...+..+.+..+ .+
T Consensus 179 ~~~g~~vlI~-g~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 179 IGPETNVLVM-GAGPIGLVTMLAARAFG--APRIVIVDVDDERLSVAKQL-G-ADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-C-CCEEEecCcccccHHHHHHHHhhhcCC
Confidence 4456788888 64 46777788888753 24689999998888877653 2 1111221 112333332211 35
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+|+--.... ..+..+.+.|+++|.++...
T Consensus 254 ~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCVGFN---KTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 789886433322 35677777788889877655
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.17 E-value=4 Score=35.14 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=56.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc------------CC---------CCcEEEEEcc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG------------LD---------ASHVEFVIGD 100 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~------------~~---------~~~V~~~~gd 100 (211)
++|.=| |+| ..+..+|..+...+-+|+.+|.+++.++.+++.+. +. ..++.+. .|
T Consensus 4 ~~I~Vi-GaG--~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~ 79 (291)
T PRK06035 4 KVIGVV-GSG--VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TS 79 (291)
T ss_pred cEEEEE-Ccc--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CC
Confidence 457777 665 44444554444445689999999999887665432 10 0112221 12
Q ss_pred hHHHhhhccCCccEEEEcCCcCc--HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 101 AQSLLLSHFREADFVLIDCNLEN--HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~--y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
. +. -...|+|+....... ..++++.+.+.++| +.+++ .|.
T Consensus 80 ~-~~----~~~aDlVieav~e~~~~k~~~~~~l~~~~~~-~~il~-S~t 121 (291)
T PRK06035 80 Y-ES----LSDADFIVEAVPEKLDLKRKVFAELERNVSP-ETIIA-SNT 121 (291)
T ss_pred H-HH----hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC-CeEEE-EcC
Confidence 2 21 245799998764432 46788888887776 56654 543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=85.12 E-value=10 Score=32.98 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+++|+=+ |.|. .+..++..+...+.+|+.++.+++..+.++.. + .+++ +. +.+...-..+|+||.-.
T Consensus 151 ~g~kvlVi-G~G~--iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~--G----~~~~--~~-~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVL-GFGR--TGMTLARTLKALGANVTVGARKSAHLARITEM--G----LSPF--HL-SELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEE-CCcH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--C----Ceee--cH-HHHHHHhCCCCEEEECC
Confidence 57889999 7643 44444444433467999999998876665431 2 1111 11 11222335799999865
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.. -..+...+.++| |.+++ |-+..++
T Consensus 219 p~~---~i~~~~l~~~~~-g~vII-Dla~~pg 245 (296)
T PRK08306 219 PAL---VLTKEVLSKMPP-EALII-DLASKPG 245 (296)
T ss_pred Chh---hhhHHHHHcCCC-CcEEE-EEccCCC
Confidence 432 123455566777 55554 7666665
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=2.9 Score=36.76 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-c----CCCCcEEEEEcchHHH--hhhccCCc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-G----LDASHVEFVIGDAQSL--LLSHFREA 112 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~----~~~~~V~~~~gda~e~--l~~l~~~f 112 (211)
+.++||-+ | |+|+.+.+|+..+...+-+|+++|..+.........+ . ....+++++.+|..+. +..+...+
T Consensus 14 ~~~~vlVt-G-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLIT-G-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEE-C-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 44789988 4 6899999999988765668999998654221111111 1 1124689999998653 23334568
Q ss_pred cEEEEcCC
Q 041509 113 DFVLIDCN 120 (211)
Q Consensus 113 D~VfiD~~ 120 (211)
|.||--+.
T Consensus 92 d~ViHlAa 99 (348)
T PRK15181 92 DYVLHQAA 99 (348)
T ss_pred CEEEECcc
Confidence 99987653
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.96 E-value=12 Score=32.76 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=59.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
|...+...+..+|.=| |+ |..+-+++.++...+.+|+++|.++. .+.|++ + + +.. ..+..+.+ ...
T Consensus 27 ~~~~~~~~~~~kI~II-G~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~-~-g----v~~-~~~~~e~~---~~~ 92 (304)
T PLN02256 27 LQEELEKSRKLKIGIV-GF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAE-L-G----VSF-FRDPDDFC---EEH 92 (304)
T ss_pred HhHhhccCCCCEEEEE-ee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHHHH-c-C----Cee-eCCHHHHh---hCC
Confidence 3333344455678888 75 55666677776554558999999874 233332 1 2 121 33444432 235
Q ss_pred ccEEEEcCCcCcHHHHHHHH-HhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAV-QAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~-~~~L~pgG~viv 143 (211)
.|+||+........++++.+ ...++| |.+++
T Consensus 93 aDvVilavp~~~~~~vl~~l~~~~l~~-~~ivi 124 (304)
T PLN02256 93 PDVVLLCTSILSTEAVLRSLPLQRLKR-STLFV 124 (304)
T ss_pred CCEEEEecCHHHHHHHHHhhhhhccCC-CCEEE
Confidence 79999988777778888887 566776 55554
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.91 E-value=17 Score=31.43 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-cCCcc
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-FREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~~~fD 113 (211)
...+.++||-. | .+.|..++.+|++. +.+|+.+..+++..+.+++ + +...-+.... .+..+.+..+ .+.+|
T Consensus 162 ~~~~~~~vlV~-g~g~vg~~~~~~a~~~---G~~vi~~~~~~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~~~~~~~d 235 (345)
T cd08260 162 RVKPGEWVAVH-GCGGVGLSAVMIASAL---GARVIAVDIDDDKLELARE-L-GAVATVNASEVEDVAAAVRDLTGGGAH 235 (345)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHH-h-CCCEEEccccchhHHHHHHHHhCCCCC
Confidence 34456777766 4 35677777777764 6789999999988888754 3 2211122222 2332222222 23799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++| |+-.. ...+..+.+.|+++|.++..
T Consensus 236 ~vi-~~~g~--~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 236 VSV-DALGI--PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEE-EcCCC--HHHHHHHHHHhhcCCEEEEe
Confidence 887 44221 23455667777888887754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=84.86 E-value=2.4 Score=33.25 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred cHHHHH--HHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCc
Q 041509 51 VANATT--LALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLEN 123 (211)
Q Consensus 51 g~G~st--l~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~ 123 (211)
|+|-|| +.||.++...+-+|.-||.|+..-..... +.+. . ......+.+..+ .+.||+|++|++...
T Consensus 10 G~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~-~~~~--~---~~~~l~~~~~~~~~~~yD~VIiD~pp~~ 79 (169)
T cd02037 10 GVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM-WRGP--M---KMGAIKQFLTDVDWGELDYLVIDMPPGT 79 (169)
T ss_pred cCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH-HhCc--c---hHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 455554 45677776557899999999876432221 1110 0 011122233333 368999999998764
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=3.9 Score=32.79 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=39.6
Q ss_pred ccHHHHH--HHHHHHccCCCcEEEEEeCChhHH--HHHHHHhcCCCCcEEEEE--cchHHHhhhccCCccEEEEcCCcC
Q 041509 50 NVANATT--LALAAAAHQTGGRVVCILRRVEEY--KLSKKILGLDASHVEFVI--GDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 50 tg~G~st--l~la~a~~~~~g~v~tiE~~~~~~--~~Ar~~~~~~~~~V~~~~--gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
.|+|-+| +.||.++...+.+|..||.||+.- ..+...... ...+.... .+..+.+..+...||+|++|++..
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~~ 87 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEG-EPLIPVVRMGKSIRADLPKVASGYDYVVVDGAPQ 87 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccC-CCCCchhhccHHHHHHHHHHhccCCEEEEeCCCC
Confidence 3556655 446666665578999999998742 111111001 11122111 122334444567899999998765
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=4.7 Score=35.29 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=52.2
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH-Hhc--CC-CCcEE-----EE-EcchHHHhhhccCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK-ILG--LD-ASHVE-----FV-IGDAQSLLLSHFREA 112 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~-~~~--~~-~~~V~-----~~-~gda~e~l~~l~~~f 112 (211)
+|.=| |+| ..+..+|..+...+-+|+.++.++.. +..++ .+. .. ..... +. ..+. + ....+
T Consensus 4 kI~Ii-G~G--~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~ 74 (341)
T PRK08229 4 RICVL-GAG--SIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A----ALATA 74 (341)
T ss_pred eEEEE-CCC--HHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-h----hccCC
Confidence 47777 665 33344444444435689999987643 33332 111 10 01111 11 1121 1 13579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+||+-.......+.++.+.+.+.++-.++.+.|-+
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 999998766666788888888887744344344544
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=84.77 E-value=24 Score=30.15 Aligned_cols=96 Identities=22% Similarity=0.170 Sum_probs=58.3
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.+.||-. |+| +|..++.+|++. +.+|+.+..+++..+.+++ +. .+. ++...-.+......+.+|.+
T Consensus 159 ~~~~~~~vlI~-g~g~iG~~~~~~a~~~---G~~v~~~~~~~~~~~~~~~-~g--~~~--~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 159 GPRPGERVAVL-GIGGLGHLAVQYARAM---GFETVAITRSPDKRELARK-LG--ADE--VVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-hC--CcE--EeccCCcchHHhccCCCCEE
Confidence 34556788888 765 888777777775 5689999999988777744 22 111 11111111111123469988
Q ss_pred EEcC-CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDC-NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~-~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+ ... ...+.+.+.|+++|.++.+.
T Consensus 230 i-~~~~~~---~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 L-VTVVSG---AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred E-ECCCcH---HHHHHHHHhcccCCEEEEEC
Confidence 7 43 222 35666677888889887654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.77 E-value=6.8 Score=33.70 Aligned_cols=144 Identities=12% Similarity=0.165 Sum_probs=83.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCC----CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 43 LMVVACANVANATTLALAAAAHQT----GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~----~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+|.=| |+ |..+-.|+.++.+. ..+|+.++.+++.++.+.+.+ + ++. ..+..+.+. .-|+||+.
T Consensus 4 ~IgfI-G~--G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-g----~~~-~~~~~e~~~----~aDiIiLa 70 (272)
T PRK12491 4 QIGFI-GC--GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-G----ITI-TTNNNEVAN----SADILILS 70 (272)
T ss_pred eEEEE-Cc--cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-C----cEE-eCCcHHHHh----hCCEEEEE
Confidence 46667 65 45666666665432 236999999988776654432 1 222 344444432 46999999
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC-------ceecC--CC----cEEEeecCCcEEEEEEeccCCCCccce
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG-------SWRSS--GS----KSQLLPIGEGLLVTRIAAASANKKSHW 185 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~-------~~~~~--~~----~~v~lpig~Gl~v~~~~~~~~~~~~~~ 185 (211)
.......+.++.+.+.+++ +.+++ + +-.| .+..+ ++ .++-.-+|.|++...........-+..
T Consensus 71 vkP~~~~~vl~~l~~~~~~-~~lvI-S--i~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 71 IKPDLYSSVINQIKDQIKN-DVIVV-T--IAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred eChHHHHHHHHHHHHhhcC-CcEEE-E--eCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHH
Confidence 8877888888888887775 55555 3 1222 11111 11 122334788888776543322222445
Q ss_pred EEeccccCCceeeEEeec
Q 041509 186 IVKVDKCTGEEHVFRVRF 203 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ 203 (211)
+..+++.-|+..++.+..
T Consensus 147 v~~lf~~~G~~~~~~E~~ 164 (272)
T PRK12491 147 VLNIFNIFGQTEVVNEKL 164 (272)
T ss_pred HHHHHHcCCCEEEEcHHH
Confidence 666777777766655443
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.75 E-value=16 Score=32.33 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=66.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh---cCCC------CcEEEEEcchHHHhhhc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL---GLDA------SHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~---~~~~------~~V~~~~gda~e~l~~l 108 (211)
.+...+|.=+ |+|.--+ .+|..+.. .+.++.+..+++..+..++.- ..+. .++.+ ..|..+.+
T Consensus 4 ~~~~mkI~Ii-GaGa~G~--alA~~La~-~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~--- 75 (341)
T PRK12439 4 AKREPKVVVL-GGGSWGT--TVASICAR-RGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA--- 75 (341)
T ss_pred ccCCCeEEEE-CCCHHHH--HHHHHHHH-CCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH---
Confidence 3455678888 7765444 44444433 347888889998887776532 1111 12322 23433332
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
...|+||+-.+.....+.++.+.+.++++..++.+-|-+..
T Consensus 76 -~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 76 -NCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred -hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 46799999888777888999999988876566666776654
|
|
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=84.74 E-value=20 Score=29.24 Aligned_cols=100 Identities=19% Similarity=0.101 Sum_probs=59.7
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--CCcEEEEEcchHHHhhhc--c
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--ASHVEFVIGDAQSLLLSH--F 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--~~~V~~~~gda~e~l~~l--~ 109 (211)
....+.++|+-. | .+.|..+..++.+. +.+|+.++.+++..+.+++ +. . ...+.....+..+.+..+ .
T Consensus 100 ~~~~~g~~vlv~-g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (288)
T smart00829 100 ARLRPGESVLIH-AAAGGVGQAAIQLAQHL---GAEVFATAGSPEKRDFLRE-LG-IPDDHIFSSRDLSFADEILRATGG 173 (288)
T ss_pred hCCCCCCEEEEe-cCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CChhheeeCCCccHHHHHHHHhCC
Confidence 344566777766 5 57777777777765 5689999999988888753 32 2 111222222333333222 3
Q ss_pred CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+|+++ |+-.. ...+...+.++++|.++.+.
T Consensus 174 ~~~d~vi-~~~~~---~~~~~~~~~l~~~g~~v~~g 205 (288)
T smart00829 174 RGVDVVL-NSLAG---EFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred CCcEEEE-eCCCH---HHHHHHHHhccCCcEEEEEc
Confidence 4689776 44322 34556677788888877543
|
Enoylreductase in Polyketide synthases. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.72 E-value=6.1 Score=32.18 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhc-------cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSH-------FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l-------~~ 110 (211)
..++||-+ |+ +|..+.++++.+...+.+|+.+..+++....+...+.....++.++.+|..+. +..+ .+
T Consensus 5 ~~~~ilIt-Ga-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVT-GA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEc-CC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45678877 54 56667777777665577999999997766555554542234588888886542 1111 24
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.|+..+
T Consensus 83 ~~d~vi~~a 91 (251)
T PRK12826 83 RLDILVANA 91 (251)
T ss_pred CCCEEEECC
Confidence 789998765
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=8.3 Score=31.57 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~ 110 (211)
+.++||=. |. +|+.+..+++.+...+.+|+.++.+++..+.....++....+++++.+|..+. +... .+
T Consensus 3 ~~~~vlIt-G~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVT-GA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEE-CC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34678877 53 56777888887766677999999998877665555543345688888886432 1111 35
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.|+..+
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 789998765
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=3.6 Score=40.40 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=60.7
Q ss_pred eEEEEccccHHHHHHHHHHHccC--CCcEEEEEeCChhHHHHHHHHhc---CC-------CCcEEEEEcchHHHhhh---
Q 041509 43 LMVVACANVANATTLALAAAAHQ--TGGRVVCILRRVEEYKLSKKILG---LD-------ASHVEFVIGDAQSLLLS--- 107 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~--~~g~v~tiE~~~~~~~~Ar~~~~---~~-------~~~V~~~~gda~e~l~~--- 107 (211)
.|+-+ |+|=|-.--...+|+.. ..-+|++||.||..+...+.+.. .- .++|+++.+|-.+.-..
T Consensus 703 VImVV-GAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLL-GCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEE-cCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 47788 99999874443333322 14589999999876555544432 11 45799999998876321
Q ss_pred -------ccCCccEEEEc-----CCcCcHHHHHHHHHhcCCC
Q 041509 108 -------HFREADFVLID-----CNLENHEGVLRAVQAGNKP 137 (211)
Q Consensus 108 -------l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~p 137 (211)
..+++|+|+.. ++-+.-.+.++-+.+.|++
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 12479999864 2334457788877777765
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.59 E-value=14 Score=32.47 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=59.9
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.++||-. |+ ++|..++.+|++. +. +|+.++.+++..+.+++ +. ....+.....+..+.+..+ ...
T Consensus 178 ~~~~~g~~vLI~-g~g~vG~a~i~lak~~---G~~~Vi~~~~~~~~~~~~~~-~g-~~~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 178 ARVRPGDTVAVI-GCGGVGLNAIQGARIA---GASRIIAVDPVPEKLELARR-FG-ATHTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCcEEEEcCCHHHHHHHHH-hC-CeEEeCCCCccHHHHHHHHcCCCC
Confidence 334566788877 54 5788888888775 44 49999999888777753 22 2111111112333323323 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+... ...++.+.+.|+++|.++...
T Consensus 252 vd~vl-d~~~~--~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 252 ADYAF-EAVGR--AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCEEE-EcCCC--hHHHHHHHHHhhcCCeEEEEe
Confidence 99775 44321 144666777788889887654
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=84.50 E-value=30 Score=31.10 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
-.|....|=..++.....+.++=. .+|++.....+...+. ++.+|+..+..- .....+...++...-+++++.-+..
T Consensus 48 gnPt~~~lE~~lA~l~g~~~~~~~-~sG~~Ai~~al~all~-~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~ 125 (377)
T TIGR01324 48 GTLTHFALQDAMCELEGGAGCYLY-PSGLAAVTNSILAFVK-AGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIG 125 (377)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEE-CcHHHHHHHHHHHhcC-CCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCH
Confidence 335444444445554455666655 4444443333333343 467887766443 2233333333311123443322111
Q ss_pred HHhhh-ccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLS-HFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~-l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.+.+ +..+..+|+++.... .....++.+.++.+..|.++++||++..+
T Consensus 126 e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 33332 345678999875432 22333444444444468888899998765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.49 E-value=8 Score=31.34 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FRE 111 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~~ 111 (211)
.+.+|-+ | ++|..+..++..+...+.+|+.++.+++......+.+... .+++++.+|..+. +... .++
T Consensus 6 ~~~ilIt-G-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALIT-G-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEE-C-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888 6 4666677777776555779999999987766655555421 5688888886432 1111 257
Q ss_pred ccEEEEcC
Q 041509 112 ADFVLIDC 119 (211)
Q Consensus 112 fD~VfiD~ 119 (211)
+|.||..+
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 89998764
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=84.49 E-value=18 Score=32.18 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE-------E----------
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF-------V---------- 97 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~-------~---------- 97 (211)
...+.++||=. | .++|..++.+|++. +.+++.++.+++..+.+++ +. ...-+.. .
T Consensus 190 ~~~~g~~vlV~-ga~g~iG~a~~~lak~~---G~~vv~~~~s~~~~~~~~~-~G-~~~~i~~~~~~~~~~~~~~~~~~~~ 263 (393)
T cd08246 190 TVKPGDNVLIW-GASGGLGSMAIQLARAA---GANPVAVVSSEEKAEYCRA-LG-AEGVINRRDFDHWGVLPDVNSEAYT 263 (393)
T ss_pred cCCCCCEEEEE-CCCcHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHH-cC-CCEEEcccccccccccccccchhhh
Confidence 34556788888 6 47787777788775 5678889999998888876 33 0000110 0
Q ss_pred ----E-cchHHHhhhc-c-C-CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 98 ----I-GDAQSLLLSH-F-R-EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 98 ----~-gda~e~l~~l-~-~-~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. -...+.+..+ . . .+|+++ |+... ..++...+.++++|.++.+.+
T Consensus 264 ~~~~~~~~~~~~v~~l~~~~~g~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 264 AWTKEARRFGKAIWDILGGREDPDIVF-EHPGR---ATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred hhhhccchHHHHHHHHhCCCCCCeEEE-ECCch---HhHHHHHHHhccCCEEEEEcc
Confidence 0 0011122222 2 2 689776 65332 345666777888898877543
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.48 E-value=6.4 Score=36.79 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=64.1
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE-----
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI----- 117 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi----- 117 (211)
++|.+ |||---.+..+-... --.|+++|.++-.++.+...-..-..-.++...|.....-. +++||.|+.
T Consensus 51 ~~l~l-GCGNS~l~e~ly~~G---~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fe-dESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQL-GCGNSELSEHLYKNG---FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFE-DESFDIVIDKGTLD 125 (482)
T ss_pred eeEee-cCCCCHHHHHHHhcC---CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCC-CcceeEEEecCccc
Confidence 68899 887665444444332 24799999999877766544321234588888888766432 567777654
Q ss_pred ----cCCcC----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 ----DCNLE----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 ----D~~~~----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|.+.. ...+++..+.++|+|+|..+...-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 22211 235678888889999998665543
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=84.34 E-value=1.6 Score=40.62 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=60.2
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEE------EEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccC
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVV------CILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~------tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~ 110 (211)
...+.++|+-| |||.=- ...|.-++..+-.|+ .||.+....+.|++. ++ ..++..+.++
T Consensus 32 ~~LkgKtIaII-GyGSqG--~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d--GF------~v~~~~Ea~~---- 96 (487)
T PRK05225 32 SYLKGKKIVIV-GCGAQG--LNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN--GF------KVGTYEELIP---- 96 (487)
T ss_pred HHhCCCEEEEE-ccCHHH--HHHhCCCccccceeEEeccccccccccchHHHHHhc--CC------ccCCHHHHHH----
Confidence 33466899999 876533 344444444455566 566666666666542 32 2355666554
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..|+|++-.+......+++.+.+.|+||..+..++
T Consensus 97 ~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 QADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 58999987665556667799999999977666544
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=84.31 E-value=9.1 Score=31.28 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=54.2
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCc--EEEEEeC-ChhHHHHHHHHhcCCCCcEEEEEc----chHHH----hhh
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGG--RVVCILR-RVEEYKLSKKILGLDASHVEFVIG----DAQSL----LLS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g--~v~tiE~-~~~~~~~Ar~~~~~~~~~V~~~~g----da~e~----l~~ 107 (211)
|+.|+=++-||+|-+|.. ||..+...+. .++|.|. .....++.+.+.+- -.+.+... |..+. +..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~--l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEI--LGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHH--HTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHH--hccccchhhcchhhHHHHHHHHHH
Confidence 344555523888887655 4444432233 3577884 44566666666651 12555443 23232 222
Q ss_pred c-cCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H-FREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~d 145 (211)
. .+.+|+|++|..-.. ..+.++.+.+.+.|--.++|.+
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVls 122 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLS 122 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEe
Confidence 2 467999999975431 2334445555555644555544
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=84.25 E-value=23 Score=29.53 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=57.3
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.+.|+=. | .+.|..++.++.+. +.+|+.++.+++..+.+++ + +....+.....+..+.+..+ .+.
T Consensus 140 ~~~~~g~~vlI~-g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (325)
T cd08253 140 AGAKAGETVLVH-GGSGAVGHAAVQLARWA---GARVIATASSAEGAELVRQ-A-GADAVFNYRAEDLADRILAATAGQG 213 (325)
T ss_pred hCCCCCCEEEEE-cCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-c-CCCEEEeCCCcCHHHHHHHHcCCCc
Confidence 444566778776 5 56777777777664 6789999999888777754 2 22111221122222222222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+++-..... .++...+.++++|.++.+
T Consensus 214 ~d~vi~~~~~~----~~~~~~~~l~~~g~~v~~ 242 (325)
T cd08253 214 VDVIIEVLANV----NLAKDLDVLAPGGRIVVY 242 (325)
T ss_pred eEEEEECCchH----HHHHHHHhhCCCCEEEEE
Confidence 99998433322 244555667778877654
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=84.22 E-value=5.2 Score=35.03 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=51.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
..++||-. .|+|+.+.++++.+...+-+|+++..++........... +...+++++.+|..+. +......+|.|
T Consensus 4 ~~k~iLVT--GatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVT--GASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEe--CCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 44678888 468999999998887656799988887655443322222 2224689999997643 33333468988
Q ss_pred EEcC
Q 041509 116 LIDC 119 (211)
Q Consensus 116 fiD~ 119 (211)
|.-+
T Consensus 82 iH~A 85 (351)
T PLN02650 82 FHVA 85 (351)
T ss_pred EEeC
Confidence 8654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.19 E-value=4.8 Score=34.83 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=55.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---CC--------------CcEEEEEcchHH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---DA--------------SHVEFVIGDAQS 103 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---~~--------------~~V~~~~gda~e 103 (211)
++|--| |+|+ .+..+|..+...+-+|+.+|.+++.++.+++.+. . +. .+++ ...|. +
T Consensus 6 ~~V~Vi-GaG~--mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~ 80 (286)
T PRK07819 6 QRVGVV-GAGQ--MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-G 80 (286)
T ss_pred cEEEEE-cccH--HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-H
Confidence 467778 7753 3333333322347899999999999988776654 1 11 1122 12222 2
Q ss_pred HhhhccCCccEEEEcCCcC--cHHHHHHHHHhcC-CCCcEEEEEecCCC
Q 041509 104 LLLSHFREADFVLIDCNLE--NHEGVLRAVQAGN-KPNGAVVVGYNAFR 149 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L-~pgG~viv~dn~~~ 149 (211)
. -...|+|+-...-. .....+..+...+ +| +.+++ .|...
T Consensus 81 ~----~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~-~~il~-snTS~ 123 (286)
T PRK07819 81 D----FADRQLVIEAVVEDEAVKTEIFAELDKVVTDP-DAVLA-SNTSS 123 (286)
T ss_pred H----hCCCCEEEEecccCHHHHHHHHHHHHHhhCCC-CcEEE-ECCCC
Confidence 1 24579888654322 2356777777776 55 66554 66443
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=21 Score=29.06 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=59.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh-HHHHHHHHhcCCCCcEEEEEcchHHHh------hhc---c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE-EYKLSKKILGLDASHVEFVIGDAQSLL------LSH---F 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~-~~~~Ar~~~~~~~~~V~~~~gda~e~l------~~l---~ 109 (211)
+++++|-. |+ +|..+..+++.+...+.+|+.+..++. ..+.....++....++.++.+|..+.- ... .
T Consensus 5 ~~k~vlIt-Ga-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVT-GS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEE-CC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45788888 64 344556666666555678988887643 333333334322346788888865421 111 2
Q ss_pred CCccEEEEcCCcC-------------c---HHHHHHHHHhcCCCCcEEEEE
Q 041509 110 READFVLIDCNLE-------------N---HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 110 ~~fD~VfiD~~~~-------------~---y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.+|.++..+... + ....++.+.+.++.+|.++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 4789988765321 1 245677777766655666554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.98 E-value=8.3 Score=35.10 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.++|+=+ |.|. .+..+|+.+...+..|+.+|.++ +..+...+.+. ...++++.++..+. ..+.+|+|+..
T Consensus 4 ~~k~v~ii-G~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~---~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVV-GAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELG--ELGIELVLGEYPEE---FLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEE-CCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH--hcCCEEEeCCcchh---HhhcCCEEEEC
Confidence 45778888 6544 45566666666688999999985 22222112222 12366777777653 23579999987
Q ss_pred CCcC
Q 041509 119 CNLE 122 (211)
Q Consensus 119 ~~~~ 122 (211)
+...
T Consensus 76 ~g~~ 79 (450)
T PRK14106 76 PGVP 79 (450)
T ss_pred CCCC
Confidence 6543
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.96 E-value=17 Score=32.70 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=63.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHH-HccCCCcEEEEEeCChh-HHHHHHHHhcCCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAA-AAHQTGGRVVCILRRVE-EYKLSKKILGLDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~-a~~~~~g~v~tiE~~~~-~~~~Ar~~~~~~~~~V~~~~g 99 (211)
+.-.|...++-..++...+.+..+=+ ++|+. ++.++- .+. ++.+|+..+..-. ......+.++...-++.++.-
T Consensus 50 r~~~p~~~~le~~lA~l~g~~~~v~~-~sG~~--ai~~~l~~l~-~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 50 RSGNPTREALEDIIAELEGGTKGFAF-ASGMA--AISTAFLLLS-KGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred CCCChhHHHHHHHHHHHhCCCCeEEE-CCHHH--HHHHHHHHhC-CCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 34556676776677666555554444 55554 444433 443 3677877765322 233333323312233444433
Q ss_pred -chHHHhhhccCCccEEEEcCCcC------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 -DAQSLLLSHFREADFVLIDCNLE------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 -da~e~l~~l~~~fD~VfiD~~~~------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|..++...+..+.++|++..... +..+..+.+.+ .|.++++|+++..
T Consensus 126 ~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~----~g~~vvvD~a~~~ 179 (390)
T PRK08064 126 TNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKA----IGCLTFVDNTFLT 179 (390)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHH----cCCEEEEECCCCc
Confidence 34444333345678999875431 33444444443 4778888998654
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.94 E-value=17 Score=32.32 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=75.1
Q ss_pred HHHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cC
Q 041509 34 ALAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~ 110 (211)
...+.+..+.|+-- + .++|....-||+. .+.+|+++=-.++..+.+++.+. +..-|.....|..+.|++. .+
T Consensus 144 ~igqpk~GetvvVS-aAaGaVGsvvgQiAKl---kG~rVVGiaGg~eK~~~l~~~lG-fD~~idyk~~d~~~~L~~a~P~ 218 (340)
T COG2130 144 DIGQPKAGETVVVS-AAAGAVGSVVGQIAKL---KGCRVVGIAGGAEKCDFLTEELG-FDAGIDYKAEDFAQALKEACPK 218 (340)
T ss_pred HhcCCCCCCEEEEE-ecccccchHHHHHHHh---hCCeEEEecCCHHHHHHHHHhcC-CceeeecCcccHHHHHHHHCCC
Confidence 33445556666655 3 4567667778874 38899999999999998887655 3445777777888888765 67
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+.|=+-.. +.++.++++|++.+++.+|-
T Consensus 219 GIDvyfeNVGg----~v~DAv~~~ln~~aRi~~CG 249 (340)
T COG2130 219 GIDVYFENVGG----EVLDAVLPLLNLFARIPVCG 249 (340)
T ss_pred CeEEEEEcCCc----hHHHHHHHhhccccceeeee
Confidence 89998855443 57888888888888888764
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=8.2 Score=31.58 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=50.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--h----h---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--L----S---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~----~---l~~ 110 (211)
..+++|=+ | ++|+.+..+++.+...+.+|+.++.+++..+.....+.....++.++..|..+.- . . ..+
T Consensus 5 ~~k~vlIt-G-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVT-G-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEE-C-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 34678877 6 4566677787777666789999999987655554444422345667777765331 1 1 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.||..+.
T Consensus 83 ~id~vi~~ag 92 (250)
T PRK07774 83 GIDYLVNNAA 92 (250)
T ss_pred CCCEEEECCC
Confidence 7899997654
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.87 E-value=14 Score=34.22 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=69.9
Q ss_pred CCCCeEEEEcc-------ccHHHHHHHHHHHccCCCcEEEEEe-CChhHHHHHHHHhcCCCCcEEEEE----cchHHHhh
Q 041509 39 NNAQLMVVACA-------NVANATTLALAAAAHQTGGRVVCIL-RRVEEYKLSKKILGLDASHVEFVI----GDAQSLLL 106 (211)
Q Consensus 39 ~~~~~VLEi~G-------tg~G~stl~la~a~~~~~g~v~tiE-~~~~~~~~Ar~~~~~~~~~V~~~~----gda~e~l~ 106 (211)
.+|..|+=+ | |-+|-.+.||-..- ..--+++.| ..|.++++.+..... -.|.|.. -|+.++..
T Consensus 98 ~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpAA~eQL~~La~q--~~v~~f~~~~~~~Pv~Iak 172 (451)
T COG0541 98 KPPTVILMV-GLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPAAIEQLKQLAEQ--VGVPFFGSGTEKDPVEIAK 172 (451)
T ss_pred CCCeEEEEE-eccCCChHhHHHHHHHHHHHcC--CceEEEecccCChHHHHHHHHHHHH--cCCceecCCCCCCHHHHHH
Confidence 346667777 6 44444444554411 123367778 567777777776551 1122222 23444432
Q ss_pred ----hc-cCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEecCCCCC------cee-cCCCcEEEee
Q 041509 107 ----SH-FREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYNAFRKG------SWR-SSGSKSQLLP 164 (211)
Q Consensus 107 ----~l-~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn~~~~~------~~~-~~~~~~v~lp 164 (211)
.. ...||+|++|..-+. ..+-++.+...++|.=.++|+|-+.-.. .|. .-.+..++++
T Consensus 173 ~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 173 AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 11 467999999986552 3556677777899998899888655433 132 2445566654
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.85 E-value=4.8 Score=34.36 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=54.6
Q ss_pred EEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 44 MVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
|.=| | .|..+..++.++...+ .+|+.+|.+++..+.+++ .+..+. ..+..+. .+ .|+||+..+.
T Consensus 3 I~iI-G--~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~--~g~~~~----~~~~~~~----~~-aD~Vilavp~ 68 (275)
T PRK08507 3 IGII-G--LGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE--LGLVDE----IVSFEEL----KK-CDVIFLAIPV 68 (275)
T ss_pred EEEE-c--cCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH--CCCCcc----cCCHHHH----hc-CCEEEEeCcH
Confidence 5556 5 4566666766665422 379999999988777643 122111 1232222 23 8999999888
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
....+.++.+.+ +++ |.+++ |
T Consensus 69 ~~~~~~~~~l~~-l~~-~~iv~-d 89 (275)
T PRK08507 69 DAIIEILPKLLD-IKE-NTTII-D 89 (275)
T ss_pred HHHHHHHHHHhc-cCC-CCEEE-E
Confidence 888888888888 776 55555 5
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 7e-05
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-GLDASHVEFVIGDA 101
+ + L +H G RV + + +LS+K++ GL V + GD
Sbjct: 126 AVFIGG----GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE 181
Query: 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143
+ E D +++ E V R + ++
Sbjct: 182 TVI---DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS 83
K+ A +S L ++ + + + ++++ A+ GR+ + R +
Sbjct: 25 KQEVRAVTLSKLRLQDDLVMWDIGA----GSASVSIEASNLMPNGRIFALERNPQYLGFI 80
Query: 84 KK-ILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVV 142
+ + A +V V A L + D V I + E ++ AV K G +V
Sbjct: 81 RDNLKKFVARNVTLVEAFAPEGL-DDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV 139
Query: 143 V 143
+
Sbjct: 140 L 140
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 3e-04
Identities = 26/125 (20%), Positives = 36/125 (28%), Gaps = 6/125 (4%)
Query: 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE 79
GQ K+ A ISALA + L + + + A + VC E
Sbjct: 6 GQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP----QTTAVCFEISEER 61
Query: 80 YKLSKK-ILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPN 138
+ + L S V A D + I L GV A
Sbjct: 62 RERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL-TAPGVFAAAWKRLPVG 120
Query: 139 GAVVV 143
G +V
Sbjct: 121 GRLVA 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.97 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.95 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.95 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.95 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.94 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.94 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.93 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.93 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.93 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.93 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.93 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.92 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.91 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.89 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.86 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 99.76 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.72 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.68 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.67 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.64 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.64 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.63 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.62 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.61 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.61 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.6 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.6 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.59 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.59 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.59 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.58 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.57 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.56 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.56 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.56 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.56 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.56 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.55 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.54 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.54 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.54 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.54 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.54 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.53 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.53 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.53 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.53 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.53 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.53 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.52 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.52 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.52 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.52 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.52 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.52 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.51 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.51 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.51 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.51 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.51 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.51 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.51 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.51 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.51 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.51 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.5 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.5 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.5 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.49 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.49 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.49 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.49 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.49 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.49 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.49 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.49 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.48 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.48 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.48 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.48 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.48 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.48 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.47 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.47 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.47 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.47 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.47 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.47 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.47 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.47 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.47 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.46 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.46 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.46 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.46 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.46 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.46 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.46 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.46 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.45 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.45 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.45 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.45 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.45 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.45 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.45 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.45 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.45 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.44 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.44 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.44 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.43 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.43 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.42 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.42 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.42 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.41 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.41 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.41 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.41 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.4 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.4 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.39 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.39 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.39 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.39 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.39 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.39 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.39 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.39 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.39 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.39 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.39 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.39 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.39 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.38 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.38 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.38 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.38 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.38 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.37 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.37 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.37 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.36 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.36 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.36 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.35 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.35 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.35 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.35 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.35 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.35 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.34 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.34 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.34 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.34 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.34 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.34 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.34 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.33 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.33 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.33 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.33 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.32 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.32 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.32 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.32 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.32 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.32 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.32 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.31 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.31 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.31 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.31 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.31 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.3 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.3 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.3 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.29 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.29 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.29 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.28 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.28 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.28 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.27 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.27 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.27 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.27 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.27 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.26 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.26 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.25 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.24 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.24 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.24 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.24 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.23 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.23 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.23 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.23 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.23 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.2 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.2 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.19 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.18 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.18 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.18 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.18 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.16 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.15 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.13 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.13 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.11 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.1 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.1 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.1 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.1 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.08 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.08 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.07 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.06 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.05 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.05 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.05 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.04 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.03 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.03 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.03 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.03 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.02 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 99.01 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.0 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.0 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.98 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.98 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.98 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.93 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.92 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.92 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.92 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.9 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.87 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.84 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.83 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.82 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.82 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.82 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.81 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.81 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.79 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.76 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.76 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.74 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.73 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.71 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.68 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.66 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.64 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.62 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.52 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.51 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.5 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.48 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.39 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.36 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.3 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.24 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.9 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.88 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.88 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.79 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.77 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.45 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.45 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.42 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.18 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.14 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.1 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.09 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.08 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.0 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.98 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.94 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.81 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.75 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.72 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.71 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.7 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.64 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.63 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.6 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.6 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.6 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.59 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.56 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.53 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.52 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.5 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.49 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.48 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.48 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.47 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.46 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.45 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.43 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.41 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.38 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.36 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.34 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.33 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.31 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.28 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.26 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.26 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.23 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.2 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.16 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.15 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.13 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.11 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.07 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.05 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.04 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.03 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.97 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.94 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.91 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.8 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.79 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.79 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.77 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.76 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.7 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.62 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.6 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.57 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.55 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 95.49 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.49 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.45 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.44 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.41 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.33 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.31 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.28 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.24 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.22 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.21 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.2 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 95.12 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.12 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.05 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.0 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.95 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.82 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.73 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.69 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.56 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.5 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 94.4 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.33 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.32 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 94.3 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.27 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.22 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.18 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 94.13 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.11 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.93 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 93.92 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.83 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.68 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.62 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 93.28 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 93.24 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.16 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.06 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.92 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 92.81 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.74 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.64 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.5 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 92.43 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 92.43 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.26 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.14 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.02 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 91.99 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.92 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 91.69 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.65 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.61 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 91.5 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 91.48 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 91.48 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 91.37 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.31 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 91.27 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 91.25 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 91.17 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.94 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 90.87 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 90.81 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 90.74 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.7 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 90.61 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 90.31 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 90.22 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 90.21 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 90.14 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.12 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 90.08 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.07 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.92 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 89.82 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 89.66 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 89.65 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 89.64 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 89.6 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 89.56 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 89.54 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 89.41 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 89.39 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 89.39 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 89.31 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 89.22 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 89.21 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.09 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 89.03 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 89.0 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 88.91 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 88.88 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 88.82 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 88.7 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 88.67 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 88.64 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.54 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 88.47 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 88.37 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 88.35 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 88.3 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 88.23 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 88.22 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.21 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 88.2 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 88.19 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 88.16 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 88.15 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 88.1 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 88.09 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 88.06 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 88.04 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 88.02 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 87.98 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 87.95 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 87.8 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 87.8 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 87.73 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 87.7 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 87.66 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 87.59 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 87.53 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 87.45 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 87.45 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 87.39 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.37 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 87.22 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.21 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 87.18 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.18 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 87.13 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 87.11 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 87.09 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 87.02 | |
| 3t8y_A | 164 | CHEB, chemotaxis response regulator protein-glutam | 87.02 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 86.97 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 86.96 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 86.92 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 86.89 |
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=207.32 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=136.6
Q ss_pred cCCChhHHHHHHHHHhhCCCC---eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEE
Q 041509 22 KAKEPNEAEFISALAAGNNAQ---LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVE 95 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~---~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~ 95 (211)
..++|.++++|..++...+++ +|||+ |||+|++|++||+++++ +++|++||+++++++.|+++++ ++. ++|+
T Consensus 35 p~i~~~~~~~l~~l~~~~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~ 112 (221)
T 3dr5_A 35 PAPDEMTGQLLTTLAATTNGNGSTGAIAI-TPAAGLVGLYILNGLAD-NTTLTCIDPESEHQRQAKALFREAGYSPSRVR 112 (221)
T ss_dssp CCCCHHHHHHHHHHHHHSCCTTCCEEEEE-STTHHHHHHHHHHHSCT-TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCEEEE-cCCchHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEE
Confidence 468999999999999998888 99999 99999999999999864 7999999999999999999998 666 7999
Q ss_pred EEEcchHHHhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----
Q 041509 96 FVIGDAQSLLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W----- 153 (211)
Q Consensus 96 ~~~gda~e~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~----- 153 (211)
+++||+.+.++.+ .++||+||+|+.+.+|.++++.+.++|+||| ++++||++++|. |
T Consensus 113 ~~~gda~~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG-~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~ 191 (221)
T 3dr5_A 113 FLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGG-ALVLADALLDGTIADQTRKDRDTQAARDADEYIR 191 (221)
T ss_dssp EECSCHHHHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEE-EEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHT
T ss_pred EEEcCHHHHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCc-EEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHh
Confidence 9999999998876 6899999999999999999999999999966 556699998652 1
Q ss_pred ecCCCcEEEeecCCcEEEEEEecc
Q 041509 154 RSSGSKSQLLPIGEGLLVTRIAAA 177 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~~~~ 177 (211)
.+++++++++|+|||++++++.-.
T Consensus 192 ~~~~~~~~~lp~gdGl~~~~~~~~ 215 (221)
T 3dr5_A 192 SIEGAHVARLPLGAGLTVVTKALE 215 (221)
T ss_dssp TCTTEEEEEESSTTCEEEEEECCC
T ss_pred hCCCeeEEEeeccchHHHHHHHHH
Confidence 168999999999999999998653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=205.65 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=134.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+++.++++|..++...++++|||+ |||+|++|++||+++++ +++|++||+++++++.|+++++ ++.++|++++||
T Consensus 43 ~i~~~~~~~l~~l~~~~~~~~VLDi-G~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 120 (242)
T 3r3h_A 43 QVAPEQAQFMQMLIRLTRAKKVLEL-GTFTGYSALAMSLALPD-DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP 120 (242)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEE-ESCCSHHHHHHHHTSCT-TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC
T ss_pred ccCHHHHHHHHHHHhhcCcCEEEEe-eCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 4789999999999999999999999 99999999999998864 7999999999999999999998 667799999999
Q ss_pred hHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----e
Q 041509 101 AQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W-----R 154 (211)
Q Consensus 101 a~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~-----~ 154 (211)
+.+.++.+ .++||+||+|+++.+|..+++.+.++|+||| ++++||++++|. + .
T Consensus 121 a~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG-~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~ 199 (242)
T 3r3h_A 121 ALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKG-LIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKN 199 (242)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEE-EEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCe-EEEEECCccCCcccCccccChHHHHHHHHHHHHhh
Confidence 99988765 4899999999999999999999999999966 555699988662 1 1
Q ss_pred cCCCcEEEeecCCcEEEEEEeccC
Q 041509 155 SSGSKSQLLPIGEGLLVTRIAAAS 178 (211)
Q Consensus 155 ~~~~~~v~lpig~Gl~v~~~~~~~ 178 (211)
+++|+++++|+|||+.+++|+.+.
T Consensus 200 ~~~~~~~~lp~~dG~~~~~k~~~~ 223 (242)
T 3r3h_A 200 DSRVFVSLLAIADGMFLVQPIAEN 223 (242)
T ss_dssp CCSEEEEEESSSSCEEEEEEC---
T ss_pred CCCEEEEEEEccCceEEEEEcCCC
Confidence 689999999999999999997753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=199.77 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=133.7
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..+.+.++++|..++...++++|||| |||+|++++++++++++ +++|++||+++++++.|+++++ ++.++|++++|
T Consensus 61 ~~~~~~~~~ll~~l~~~~~~~~VLei-G~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
T 1sui_A 61 MTTSADEGQFLSMLLKLINAKNTMEI-GVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138 (247)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEE-CCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CCcCHHHHHHHHHHHHhhCcCEEEEe-CCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 35789999999999999999999999 99999999999999864 7999999999999999999998 66678999999
Q ss_pred chHHHhhhc------cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce--------------------
Q 041509 100 DAQSLLLSH------FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW-------------------- 153 (211)
Q Consensus 100 da~e~l~~l------~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~-------------------- 153 (211)
|+.+.++.+ .++||+||+|+++.+|..+++.+.++|+|||.+ ++||++++|..
T Consensus 139 da~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l-v~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~ 217 (247)
T 1sui_A 139 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI-GYDNTLWNGSVVAPPDAPLRKYVRYYRDFVL 217 (247)
T ss_dssp CHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCE-EEECTTGGGGGGCCTTSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEE-EEecCCcCCcccCCCccchhhhhhHHHHHHH
Confidence 999988765 478999999999999999999999999997765 55998875510
Q ss_pred -------ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -------RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -------~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.++++.++++|++||+++++|+
T Consensus 218 ~~~~~l~~~~~~~~~~lp~~dG~~l~~k~ 246 (247)
T 1sui_A 218 ELNKALAVDPRIEICMLPVGDGITICRRI 246 (247)
T ss_dssp HHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence 1588999999999999999875
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=196.40 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=133.1
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.+.++++|..++...++++|||| |||+|++++++++++++ +++|+++|+++++++.|+++++ ++.++|++++||
T Consensus 53 ~~~~~~~~~l~~l~~~~~~~~VLei-G~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 130 (237)
T 3c3y_A 53 STSPLAGQLMSFVLKLVNAKKTIEV-GVFTGYSLLLTALSIPD-DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD 130 (237)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEE-CCTTSHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEe-CCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 5789999999999999999999999 99999999999999864 7999999999999999999998 666789999999
Q ss_pred hHHHhhhc------cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc---------------------e
Q 041509 101 AQSLLLSH------FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS---------------------W 153 (211)
Q Consensus 101 a~e~l~~l------~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~---------------------~ 153 (211)
+.+.++.+ .++||+||+|+++.+|.++++.+.++|+||| ++++||++++|. +
T Consensus 131 a~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG-~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~ 209 (237)
T 3c3y_A 131 AMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGG-IVAYDNTLWGGTVAQPESEVPDFMKENREAVIEL 209 (237)
T ss_dssp HHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEE-EEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCe-EEEEecCCcCCccCCCcccchhhHHHHHHHHHHH
Confidence 99988765 4789999999999999999999999999966 556699876531 0
Q ss_pred -----ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -----RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -----~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.++++.++++|++||+++++|+
T Consensus 210 ~~~l~~~~~~~~~~lp~~dG~~~~~~~ 236 (237)
T 3c3y_A 210 NKLLAADPRIEIVHLPLGDGITFCRRL 236 (237)
T ss_dssp HHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence 1688999999999999999985
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=187.06 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=133.7
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..+.+..++++..++...++++|||+ |||+|++|++++..++. +++|+++|+++++++.|+++++ +..++|+++++
T Consensus 46 ~~~~~~~~~~l~~l~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 123 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLMQAKKVIDI-GTFTGYSAIAMGLALPK-DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123 (225)
T ss_dssp GSCCHHHHHHHHHHHHHHTCSEEEEE-CCTTSHHHHHHHTTCCT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEe-CCcchHHHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC
Confidence 45889999999999998899999999 99999999999998753 7899999999999999999998 66678999999
Q ss_pred chHHHhhhcc-----CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce---------------------
Q 041509 100 DAQSLLLSHF-----READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW--------------------- 153 (211)
Q Consensus 100 da~e~l~~l~-----~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~--------------------- 153 (211)
|+.+.++.+. ++||+||+|+....+..+++.+.++|+|||. ++++|+++++.+
T Consensus 124 d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~-lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 202 (225)
T 3tr6_A 124 PAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGL-IAVDNVLRRGQVADEENQSENNQLIRLFNQKVY 202 (225)
T ss_dssp CHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEE-EEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcE-EEEeCCCcCCcccCccccChHHHHHHHHHHHHh
Confidence 9998877653 7999999999999999999999999999665 555998876521
Q ss_pred ecCCCcEEEeecCCcEEEEEEec
Q 041509 154 RSSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
.+++++++++|+++|+.+++|++
T Consensus 203 ~~~~~~~~~lp~~dG~~~~~k~~ 225 (225)
T 3tr6_A 203 KDERVDMILIPIGDGLTLARKKS 225 (225)
T ss_dssp HCTTEEEEEECSTTCEEEEEECC
T ss_pred cCCCeEEEEEEcCCccEEEEECC
Confidence 16889999999999999999863
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=185.65 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=132.4
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.+..++++..++...++++|||+ |||+|+++++++.+.+ +++|+++|+++++++.|+++++ ++.++|+++.+|
T Consensus 54 ~~~~~~~~~l~~~~~~~~~~~vLDi-G~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (232)
T 3ntv_A 54 IVDRLTLDLIKQLIRMNNVKNILEI-GTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN 130 (232)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEEE-CCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred CcCHHHHHHHHHHHhhcCCCEEEEE-eCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 4788899999999998899999999 9999999999998553 7899999999999999999998 666799999999
Q ss_pred hHHHhh-hccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc-----e---------------------
Q 041509 101 AQSLLL-SHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS-----W--------------------- 153 (211)
Q Consensus 101 a~e~l~-~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~-----~--------------------- 153 (211)
+.+.++ .+.++||+||+|+....|.++++.+.++|+|||. +++||++++|. .
T Consensus 131 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~-lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (232)
T 3ntv_A 131 ALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGL-VITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLI 209 (232)
T ss_dssp GGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEE-EEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeE-EEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHh
Confidence 999887 6678999999999999999999999999999665 56699988652 0
Q ss_pred ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.+++++++++|++||+.+++|+
T Consensus 210 ~~~~~~~~~lp~~dG~~i~~k~ 231 (232)
T 3ntv_A 210 KQPGYTTNFLNIDDGLAISIKG 231 (232)
T ss_dssp TCTTEEEEEECSTTCEEEEEEC
T ss_pred cCCCeEEEEEEcCCceEEEEEC
Confidence 1688999999999999999985
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=184.97 Aligned_cols=152 Identities=19% Similarity=0.279 Sum_probs=132.8
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.+..+++|..++...++++|||| |||+|++|++++.++++ +++|+++|+++++++.|+++++ +..++|+++.+|
T Consensus 46 ~~~~~~~~~l~~l~~~~~~~~VLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 123 (248)
T 3tfw_A 46 DVAANQGQFLALLVRLTQAKRILEI-GTLGGYSTIWMARELPA-DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123 (248)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEE-CCTTSHHHHHHHTTSCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred ccCHHHHHHHHHHHhhcCCCEEEEe-cCCchHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3668999999999988899999999 99999999999998853 7899999999999999999998 667799999999
Q ss_pred hHHHhhhccC--CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----ecCC
Q 041509 101 AQSLLLSHFR--EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W-----RSSG 157 (211)
Q Consensus 101 a~e~l~~l~~--~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~-----~~~~ 157 (211)
+.+.++.+.+ +||+||+|++...|..+++.+.++|+|||.+ +++|+++.|. + .+++
T Consensus 124 ~~~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l-v~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (248)
T 3tfw_A 124 ALQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLI-IGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPR 202 (248)
T ss_dssp HHHHHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE-EEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEE-EEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCC
Confidence 9998876644 8999999999999999999999999997755 5599887641 1 1688
Q ss_pred CcEEEe-ecC----CcEEEEEEecc
Q 041509 158 SKSQLL-PIG----EGLLVTRIAAA 177 (211)
Q Consensus 158 ~~~v~l-pig----~Gl~v~~~~~~ 177 (211)
|+++++ |+| ||+.++++++.
T Consensus 203 ~~~~~l~~~g~~~~DG~~i~~~~~~ 227 (248)
T 3tfw_A 203 LTATALQTVGTKGWDGFTLAWVNAA 227 (248)
T ss_dssp EEEEEEEECSTTCSEEEEEEEECCC
T ss_pred EEEEEeecCCCCCCCeeEEEEEeCC
Confidence 998887 777 99999999874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=180.42 Aligned_cols=150 Identities=20% Similarity=0.302 Sum_probs=132.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+++..+++|..++...++++|||+ |||+|++++++++++++ +++|+++|+++++++.|+++++ +..++|+++++|
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 118 (223)
T 3duw_A 41 DVSPTQGKFLQLLVQIQGARNILEI-GTLGGYSTIWLARGLSS-GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGL 118 (223)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEE-CCTTSHHHHHHHTTCCS-SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEe-cCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3679999999999988899999999 99999999999998853 6899999999999999999998 667789999999
Q ss_pred hHHHhhhcc----CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----ec
Q 041509 101 AQSLLLSHF----READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W-----RS 155 (211)
Q Consensus 101 a~e~l~~l~----~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~-----~~ 155 (211)
+.+.++.+. ++||+||+|+....+..+++.+.++|+||| ++++||+++++. + .+
T Consensus 119 ~~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG-~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (223)
T 3duw_A 119 ALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGT-VIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAE 197 (223)
T ss_dssp HHHHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTC-EEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCc-EEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhC
Confidence 998876542 679999999999999999999999999977 555699887641 1 16
Q ss_pred CCCcEEEeec-----CCcEEEEEEe
Q 041509 156 SGSKSQLLPI-----GEGLLVTRIA 175 (211)
Q Consensus 156 ~~~~~v~lpi-----g~Gl~v~~~~ 175 (211)
++++++++|+ +||+.+++++
T Consensus 198 ~~~~~~~~p~~~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 198 PRVSATALQTVGSKGYDGFIMAVVK 222 (223)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCeEEEEEeccCCCCCCeeEEEEEe
Confidence 8899999999 9999999875
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=184.21 Aligned_cols=150 Identities=18% Similarity=0.248 Sum_probs=131.7
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.|..+++|..++...++++|||+ |||+|+++++++.++++ +++|+++|+++++++.|+++++ +..++|+++.+|
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d 132 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEI-GVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGP 132 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEE-CCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEe-cCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 5789999999999988899999999 99999999999998864 7899999999999999999997 666789999999
Q ss_pred hHHHhhhc---c--CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----e
Q 041509 101 AQSLLLSH---F--READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W-----R 154 (211)
Q Consensus 101 a~e~l~~l---~--~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~-----~ 154 (211)
+.+.++.+ . ++||+||+|+.+.+|..+++.+.++|+|||. +++||++++|. + .
T Consensus 133 ~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~-lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 211 (232)
T 3cbg_A 133 ALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGL-MVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQ 211 (232)
T ss_dssp HHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEE-EEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeE-EEEeCCCcCCccCCcccCChHHHHHHHHHHHHhh
Confidence 99887655 2 7899999999999999999999999999665 55698887541 1 1
Q ss_pred cCCCcEEEeecCCcEEEEEEe
Q 041509 155 SSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 155 ~~~~~~v~lpig~Gl~v~~~~ 175 (211)
+++++++++|++||+++++|+
T Consensus 212 ~~~~~~~~lp~~dG~~~~~~~ 232 (232)
T 3cbg_A 212 DERVRISVIPLGDGMTLALKK 232 (232)
T ss_dssp CTTEEEEEECSBTCEEEEEEC
T ss_pred CCCeEEEEEEcCCeEEEEEeC
Confidence 688999999999999999874
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=180.19 Aligned_cols=151 Identities=20% Similarity=0.235 Sum_probs=131.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..+.+..+++|..++...++++|||+ |||+|+++++++++++. +++|+++|+++++++.|+++++ +..++++++.+
T Consensus 51 ~~~~~~~~~~l~~l~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~ 128 (229)
T 2avd_A 51 SMMTCEQAQLLANLARLIQAKKALDL-GTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 128 (229)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEE-CCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred CccCHHHHHHHHHHHHhcCCCEEEEE-cCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc
Confidence 46888999999999999999999999 99999999999998753 6899999999999999999997 66689999999
Q ss_pred chHHHhhhcc-----CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----
Q 041509 100 DAQSLLLSHF-----READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W----- 153 (211)
Q Consensus 100 da~e~l~~l~-----~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~----- 153 (211)
|+.+.++.+. ++||+||+|+.+..|..+++.+.++|+|||. ++++|+++++. +
T Consensus 129 d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~-lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 207 (229)
T 2avd_A 129 PALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGI-LAVLRVLWRGKVLQPPKGDVAAECVRNLNERIR 207 (229)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEE-EEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeE-EEEECCCcCCcccCcccCChHHHHHHHHHHHHh
Confidence 9998876542 7899999999999999999999999999665 55588876541 1
Q ss_pred ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.+++++++++|++||+.+++|.
T Consensus 208 ~~~~~~~~~lp~~dGl~~~~k~ 229 (229)
T 2avd_A 208 RDVRVYISLLPLGDGLTLAFKI 229 (229)
T ss_dssp HCTTEEEEEECSTTCEEEEEEC
T ss_pred hCCCEEEEEEecCCceEEEEEC
Confidence 1688999999999999999874
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=177.90 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=131.6
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..+.+..+++|..++...++++|||+ |||+|++|+++|+++++ +++|++||+++++++.|+++++ ++.++|++++|
T Consensus 40 ~~~~~~~~~~l~~l~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 117 (221)
T 3u81_A 40 MNVGDAKGQIMDAVIREYSPSLVLEL-GAYCGYSAVRMARLLQP-GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG 117 (221)
T ss_dssp GGCCHHHHHHHHHHHHHHCCSEEEEE-CCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred cccCHHHHHHHHHHHHhcCCCEEEEE-CCCCCHHHHHHHHhCCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC
Confidence 46889999999999999899999999 99999999999998754 7899999999999999999998 66778999999
Q ss_pred chHHHhhhcc-----CCccEEEEcCCcCcHHHHHHHHH--hcCCCCcEEEEEecCCCCCc--e-----ecCCCcEEEee-
Q 041509 100 DAQSLLLSHF-----READFVLIDCNLENHEGVLRAVQ--AGNKPNGAVVVGYNAFRKGS--W-----RSSGSKSQLLP- 164 (211)
Q Consensus 100 da~e~l~~l~-----~~fD~VfiD~~~~~y~~~l~~~~--~~L~pgG~viv~dn~~~~~~--~-----~~~~~~~v~lp- 164 (211)
|+.+.++.+. ++||+||+|+....|...++.+. ++|+|||.+ +++|+..++. + .+++|+++.+|
T Consensus 118 d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~l-v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (221)
T 3u81_A 118 ASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL-LADNVIVPGTPDFLAYVRGSSSFECTHYSS 196 (221)
T ss_dssp CHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEE-EESCCCCCCCHHHHHHHHHCTTEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEE-EEeCCCCcchHHHHHHHhhCCCceEEEccc
Confidence 9999887664 68999999999888875444433 889997755 5598887762 1 26889999999
Q ss_pred ------cCCcEEEEEEeccC
Q 041509 165 ------IGEGLLVTRIAAAS 178 (211)
Q Consensus 165 ------ig~Gl~v~~~~~~~ 178 (211)
++||+.+++++...
T Consensus 197 ~~~~~~~~dG~~~~~~~g~~ 216 (221)
T 3u81_A 197 YLEYMKVVDGLEKAIYQGPS 216 (221)
T ss_dssp EETTTTEEEEEEEEEECCCC
T ss_pred ccccCCCCCceEEEEEeCCC
Confidence 89999999997654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=174.84 Aligned_cols=150 Identities=23% Similarity=0.340 Sum_probs=130.7
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..+.+..++++..++...++++|||+ |||+|++|++++..++. +++|+++|+++++++.|+++++ +..++++++++
T Consensus 38 p~~~~~~~~~l~~l~~~~~~~~vLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 115 (210)
T 3c3p_A 38 PIVDRQTGRLLYLLARIKQPQLVVVP-GDGLGCASWWFARAISI-SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG 115 (210)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEE-SCGGGHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES
T ss_pred CCcCHHHHHHHHHHHHhhCCCEEEEE-cCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 46888999999998888889999999 99999999999998753 7899999999999999999997 66678999999
Q ss_pred chHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc---------------e-----ecCCCc
Q 041509 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS---------------W-----RSSGSK 159 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~---------------~-----~~~~~~ 159 (211)
|+.+.++.+.+ ||+||+|+...++..+++.+.++|+|||.+ +++|+++.+. + .++++.
T Consensus 116 d~~~~~~~~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~l-v~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (210)
T 3c3p_A 116 DPLGIAAGQRD-IDILFMDCDVFNGADVLERMNRCLAKNALL-IAVNALRRGSVAESHEDPETAALREFNHHLSRRRDFF 193 (210)
T ss_dssp CHHHHHTTCCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEE-EEESSSSCC------------CCCHHHHHHTTCTTEE
T ss_pred cHHHHhccCCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEE-EEECccccCcccCcccchHHHHHHHHHHHHhhCCCeE
Confidence 99998776566 999999999999999999999999997655 5588776531 1 257889
Q ss_pred EEEeecCCcEEEEEEe
Q 041509 160 SQLLPIGEGLLVTRIA 175 (211)
Q Consensus 160 ~v~lpig~Gl~v~~~~ 175 (211)
++++|+++|+.+++|+
T Consensus 194 ~~~~p~~~G~~~~~~~ 209 (210)
T 3c3p_A 194 TTIVPVGNGVLLGYRL 209 (210)
T ss_dssp EEEECSTTCEEEEEEC
T ss_pred EEEEecCCceEEEEeC
Confidence 9999999999999986
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=172.24 Aligned_cols=152 Identities=20% Similarity=0.297 Sum_probs=131.5
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.|..++++..++...++++|||+ |||+|+++++++..+++ +++|+++|+++++++.|+++++ +..++++++.+|
T Consensus 43 ~~~~~~~~~l~~l~~~~~~~~VLdi-G~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d 120 (239)
T 2hnk_A 43 QISPEEGQFLNILTKISGAKRIIEI-GTFTGYSSLCFASALPE-DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGS 120 (239)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEE-CCTTCHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred ccCHHHHHHHHHHHHhhCcCEEEEE-eCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC
Confidence 6889999999999988899999999 99999999999998753 6899999999999999999997 555679999999
Q ss_pred hHHHhhhc---------------c-CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc------------
Q 041509 101 AQSLLLSH---------------F-READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS------------ 152 (211)
Q Consensus 101 a~e~l~~l---------------~-~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~------------ 152 (211)
+.+.++.+ . ++||+||+|+....+.++++.+.++|+|||.++ ++|++++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv-~~~~~~~g~~~~~~~~~~~~~ 199 (239)
T 2hnk_A 121 ALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLI-ADNVLWDGSVADLSHQEPSTV 199 (239)
T ss_dssp HHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEE-EECSSGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEE-EEccccCCcccCccccchHHH
Confidence 99876644 2 789999999999999999999999999976555 588776541
Q ss_pred ----e-----ecCCCcEEEeecCCcEEEEEEecc
Q 041509 153 ----W-----RSSGSKSQLLPIGEGLLVTRIAAA 177 (211)
Q Consensus 153 ----~-----~~~~~~~v~lpig~Gl~v~~~~~~ 177 (211)
+ .++++.++++|+++|+.+++|+-.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~ 233 (239)
T 2hnk_A 200 GIRKFNELVYNDSLVDVSLVPIADGVSLVRKRLE 233 (239)
T ss_dssp HHHHHHHHHHHCTTEEEEEECSTTCEEEEEECCC
T ss_pred HHHHHHHHHhhCCCeEEEEEEcCCceEeeeehhh
Confidence 1 168899999999999999998653
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=166.61 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=129.2
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..+++..++++..++...++++|||+ |||+|++++++++..+ +++|+++|+++++++.|+++++ +..++|+++.+
T Consensus 36 ~~~~~~~~~~l~~~~~~~~~~~vLdi-G~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 36 PIMDLLGMESLLHLLKMAAPARILEI-GTAIGYSAIRMAQALP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEE-CCTTSHHHHHHHHHCT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred CCcCHHHHHHHHHHHhccCCCEEEEe-cCCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 46889999999999888899999999 9999999999999874 6899999999999999999998 55678999999
Q ss_pred chHHHhhhc--cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------e--------------
Q 041509 100 DAQSLLLSH--FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------W-------------- 153 (211)
Q Consensus 100 da~e~l~~l--~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------~-------------- 153 (211)
|+.+.++.. .++||+||+|+....+.++++.+.+.|+|||.+++ +|+++.+. +
T Consensus 113 d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (233)
T 2gpy_A 113 DALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILS-DNVLFRGLVAETDIEHKRHKQLATKIDTYNQWL 191 (233)
T ss_dssp CGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEE-ETTTC-------------------------CTT
T ss_pred CHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEE-EcCCcCCccCCccccccchhHHHHHHHHHHHHH
Confidence 999877655 57999999999988999999999999999776655 77665441 0
Q ss_pred -ecCCCcEEEeecCCcEEEEEEecc
Q 041509 154 -RSSGSKSQLLPIGEGLLVTRIAAA 177 (211)
Q Consensus 154 -~~~~~~~v~lpig~Gl~v~~~~~~ 177 (211)
.++++.++++|+++|+.+++++..
T Consensus 192 ~~~~~~~~~~~p~~dG~~~~~~~~~ 216 (233)
T 2gpy_A 192 LEHPQYDTRIFPVGDGIAISIKRET 216 (233)
T ss_dssp TTCTTEEEEEECSTTCEEEEEEC--
T ss_pred HhCCCeEEEEEEcCCeEEEEEEcCC
Confidence 147788999999999999998764
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=161.17 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=98.8
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC--CCcEEEE
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD--ASHVEFV 97 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~--~~~V~~~ 97 (211)
.++++.+++||... ..++++|||+ || ||||+|+|+. . +|+|+|||.|++.++.|+++++ ++ .++|+++
T Consensus 14 ~~v~~~~~~~L~~~--l~~a~~VLEi-Gt--GySTl~lA~~--~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~ 85 (202)
T 3cvo_A 14 LTMPPAEAEALRMA--YEEAEVILEY-GS--GGSTVVAAEL--P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIV 85 (202)
T ss_dssp CCSCHHHHHHHHHH--HHHCSEEEEE-SC--SHHHHHHHTS--T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEE
T ss_pred ccCCHHHHHHHHHH--hhCCCEEEEE-Cc--hHHHHHHHHc--C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 46889999999884 4578999999 98 6999999983 2 7999999999999999999998 66 7899999
Q ss_pred EcchHHH--------------hhh-------cc--CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce
Q 041509 98 IGDAQSL--------------LLS-------HF--READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW 153 (211)
Q Consensus 98 ~gda~e~--------------l~~-------l~--~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~ 153 (211)
+||+.+. ++. +. ++||+||+|++++ ..++..+.++|+||| ++++||++.+..|
T Consensus 86 ~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG-~Iv~DNv~~r~~y 161 (202)
T 3cvo_A 86 WTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPV-TLLFDDYSQRRWQ 161 (202)
T ss_dssp ECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCE-EEEETTGGGCSSG
T ss_pred EeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCe-EEEEeCCcCCcch
Confidence 9997654 221 22 7899999999876 367777889999965 5577997765533
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=149.31 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=116.4
Q ss_pred CCChhHHHHHHHHHhh----CCCCeEEEEccccHHHHHHHHHHHccC---CCcEEEEEeCCh------------------
Q 041509 23 AKEPNEAEFISALAAG----NNAQLMVVACANVANATTLALAAAAHQ---TGGRVVCILRRV------------------ 77 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~----~~~~~VLEi~Gtg~G~stl~la~a~~~---~~g~v~tiE~~~------------------ 77 (211)
++.++.+.+|..+++. ..|+.|||+ ||+.|+|++++|.+++. ++++|+++|..+
T Consensus 85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEi-Gv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~ 163 (282)
T 2wk1_A 85 MIGIKRLENIRQCVEDVIGNNVPGDLVET-GVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMAL 163 (282)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCCEEEEE-CCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCG
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCcEEEe-ecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccc
Confidence 3556677777777654 558999999 99999999999998853 368999999642
Q ss_pred --------hHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEE
Q 041509 78 --------EEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 78 --------~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+.|++|++ ++ .++|+++.||+.+.++.+ .++|||||+|+++. .|.++++.+.++|+| |+++++
T Consensus 164 ~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~p-GGiIv~ 242 (282)
T 2wk1_A 164 HRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSV-GGYVIV 242 (282)
T ss_dssp GGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEE-EEEEEE
T ss_pred ccccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCC-CEEEEE
Confidence 14678999998 66 489999999999999876 47899999999983 578899999999998 557778
Q ss_pred ecCCC-CC---cee----cCCCcEEEeecCCcEEEEEE
Q 041509 145 YNAFR-KG---SWR----SSGSKSQLLPIGEGLLVTRI 174 (211)
Q Consensus 145 dn~~~-~~---~~~----~~~~~~v~lpig~Gl~v~~~ 174 (211)
||..+ +| .|. ..++...++++..+...-+|
T Consensus 243 DD~~~~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk 280 (282)
T 2wk1_A 243 DDYMMCPPCKDAVDEYRAKFDIADELITIDRDGVYWQR 280 (282)
T ss_dssp SSCTTCHHHHHHHHHHHHHTTCCSCCEECSSSCEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHhcCCceEEEEecCEEEEEEe
Confidence 99864 44 121 45666777788765544443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=138.96 Aligned_cols=115 Identities=10% Similarity=0.114 Sum_probs=96.7
Q ss_pred CC-hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHH---ccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc
Q 041509 24 KE-PNEAEFISALAAGNNAQLMVVACANVANATTLALAAA---AHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG 99 (211)
Q Consensus 24 ~~-~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a---~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g 99 (211)
.. |+++.++..++...++++|||| |||+|++|++|++. +. ++++|++||+++++++.|+. ...+|++++|
T Consensus 64 ~~~p~~~~~l~~~l~~~~~~~VLDi-G~GtG~~t~~la~~~~~~~-~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~g 137 (236)
T 2bm8_A 64 LKDPDTQAVYHDMLWELRPRTIVEL-GVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPAS----DMENITLHQG 137 (236)
T ss_dssp CSCHHHHHHHHHHHHHHCCSEEEEE-CCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGG----GCTTEEEEEC
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEE-eCCCCHHHHHHHHhhhhcC-CCCEEEEEeCChHHHHHHhc----cCCceEEEEC
Confidence 44 8888888888877788999999 99999999999987 33 37899999999999988872 2468999999
Q ss_pred chHHH--hhhccC-CccEEEEcCCcCcHHHHHHHHHh-cCCCCcEEEEE
Q 041509 100 DAQSL--LLSHFR-EADFVLIDCNLENHEGVLRAVQA-GNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~--l~~l~~-~fD~VfiD~~~~~y~~~l~~~~~-~L~pgG~viv~ 144 (211)
|+.+. ++.+.+ +||+|++|+.+.++.+.++++.+ .|+|||.+++.
T Consensus 138 D~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 138 DCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp CSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred cchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEE
Confidence 99875 454444 79999999988889999999996 99998877763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=120.61 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=88.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
.++++|||+ |||+|..+++++.. ...+|+++|+++++++.|++|++ +. ++++++++|+.+.++.+ .++||+|
T Consensus 43 ~~~~~vLDl-gcG~G~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i 117 (189)
T 3p9n_A 43 LTGLAVLDL-YAGSGALGLEALSR---GAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLV 117 (189)
T ss_dssp CTTCEEEEE-TCTTCHHHHHHHHT---TCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred CCCCEEEEe-CCCcCHHHHHHHHC---CCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEE
Confidence 577899999 99999999987763 25799999999999999999998 54 78999999999987654 6799999
Q ss_pred EEcCCcC----cHHHHHHHHHh--cCCCCcEEEEEecC
Q 041509 116 LIDCNLE----NHEGVLRAVQA--GNKPNGAVVVGYNA 147 (211)
Q Consensus 116 fiD~~~~----~y~~~l~~~~~--~L~pgG~viv~dn~ 147 (211)
++|.... .+.+.++.+.+ +|+|||.+++.++.
T Consensus 118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 118 LADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred EECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 9997644 36788999988 99999988886643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=123.16 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
..++....+...+...++.+|||+ |||+|+.++.++...+ .++|+++|+++++++.|+++++ +. ++++++.+|+
T Consensus 24 ~~~~i~~~~l~~l~~~~~~~vLDi-G~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~ 99 (204)
T 3e05_A 24 TKQEVRAVTLSKLRLQDDLVMWDI-GAGSASVSIEASNLMP--NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFA 99 (204)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEE-TCTTCHHHHHHHHHCT--TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCT
T ss_pred ChHHHHHHHHHHcCCCCCCEEEEE-CCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCCh
Confidence 444454555555567778899999 9999999999998853 6899999999999999999997 54 7899999999
Q ss_pred HHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.++. .++||+||++....++.+.++.+.+.|+|||.+++..
T Consensus 100 ~~~~~~-~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 100 PEGLDD-LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp TTTCTT-SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhhhhc-CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 877654 4789999999887789999999999999999888754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=133.00 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=90.0
Q ss_pred HHHhhCCCCeEEEEccccHHH-HHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccC
Q 041509 34 ALAAGNNAQLMVVACANVANA-TTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~-stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~ 110 (211)
.++...++++|||| |||+|. +++.+|+. .+++|++||++|++++.||++++ ++ ++|+|++||+.+. + ++
T Consensus 116 ~la~l~~g~rVLDI-GcG~G~~ta~~lA~~---~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--d~ 187 (298)
T 3fpf_A 116 ALGRFRRGERAVFI-GGGPLPLTGILLSHV---YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--GL 187 (298)
T ss_dssp HHTTCCTTCEEEEE-CCCSSCHHHHHHHHT---TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--GC
T ss_pred HHcCCCCcCEEEEE-CCCccHHHHHHHHHc---cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--CC
Confidence 46677889999999 999875 45556543 37899999999999999999997 76 8999999999885 4 58
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+||+++..+++.+.++++.+.|+|||.+++.+
T Consensus 188 ~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 188 EFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 99999999888899999999999999999888754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=121.88 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
..+.....+...+...++.+|||+ |||+|+.++.+++. +++|+++|+++++++.|+++++ +..++++++.+|+
T Consensus 39 ~~~~~~~~~l~~l~~~~~~~vLDl-GcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 113 (204)
T 3njr_A 39 TKSPMRALTLAALAPRRGELLWDI-GGGSGSVSVEWCLA----GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA 113 (204)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEE-TCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEe-cCCCCHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch
Confidence 444555555555666778899999 99999999999875 6899999999999999999997 5555899999999
Q ss_pred HHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.++. .++||+||+++.. +.. +++.+.+.|+|||.+++..
T Consensus 114 ~~~~~~-~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 114 PAALAD-LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp TGGGTT-SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEE
T ss_pred hhhccc-CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEe
Confidence 987664 4689999999854 455 9999999999999887744
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=117.46 Aligned_cols=114 Identities=12% Similarity=0.023 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
..+.+...+...++.+|||+ |||+|..++.++...+ +++|+++|+++++++.|+++++ +..+++ ++.+|+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~vldi-G~G~G~~~~~l~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~ 88 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDI-GGGSGSIAIEWLRSTP--QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF 88 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEE-STTTTHHHHHHHTTSS--SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred HHHHHHHHhcccCCCeEEEe-CCCCCHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence 33444444456677799999 9999999999998763 6899999999999999999997 555589 9999998777
Q ss_pred hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 106 LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+...++||+|+++..... ...++.+.+.|+|||.+++.+.
T Consensus 89 ~~~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 89 DDVPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGCCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hccCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEee
Confidence 653489999999876654 7789999999999998887553
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=128.91 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=93.7
Q ss_pred HHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 30 EFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 30 ~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
+++..++. ..+..+|||+ |||+|..++.|++....++.+|++||++++|++.||++++ +...+|+++++|+.+.
T Consensus 58 ~~i~~l~~~~~~~~~~vLDl-GcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~- 135 (261)
T 4gek_A 58 SMIGMLAERFVQPGTQVYDL-GCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI- 135 (261)
T ss_dssp HHHHHHHHHHCCTTCEEEEE-TCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-
T ss_pred HHHHHHHHHhCCCCCEEEEE-eCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-
Confidence 34444443 3467799999 9999999999999876667799999999999999999987 5567899999999875
Q ss_pred hhccCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 106 LSHFREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+ .++||+|++.... .+....++.+.+.|+|||.+++.+....
T Consensus 136 ~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 136 A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp C--CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred c--ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 3 4679999986532 2345789999999999999998876544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=119.12 Aligned_cols=112 Identities=9% Similarity=0.019 Sum_probs=90.5
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++..+....++++|||+ |||+|..++.++.. ...+|+++|+++++++.|+++++ ++.++++++.+|+.+.++..
T Consensus 22 ~~~~l~~~~~~~~vLDl-GcG~G~~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (177)
T 2esr_A 22 IFNMIGPYFNGGRVLDL-FAGSGGLAIEAVSR---GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL 97 (177)
T ss_dssp HHHHHCSCCCSCEEEEE-TCTTCHHHHHHHHT---TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred HHHHHHhhcCCCeEEEe-CCCCCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh
Confidence 33333325577899999 99999999998875 25799999999999999999998 44568999999999977765
Q ss_pred cCCccEEEEcCCc--CcHHHHHHHHH--hcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNL--ENHEGVLRAVQ--AGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~--~~y~~~l~~~~--~~L~pgG~viv~dn 146 (211)
.++||+|++|... ..+.+.++.+. +.|+|||.+++..+
T Consensus 98 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 98 TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 6789999999764 35567777877 88999888877554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=124.59 Aligned_cols=129 Identities=26% Similarity=0.249 Sum_probs=106.9
Q ss_pred HHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--
Q 041509 11 KAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-- 88 (211)
Q Consensus 11 ~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-- 88 (211)
..|...+......+.+.....+..++...++++|||+ |||+|..+++++..+.+ +++|+++|+++++++.|+++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vldi-G~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~ 141 (255)
T 3mb5_A 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEA-GVGSGALTLFLANIVGP-EGRVVSYEIREDFAKLAWENIKWA 141 (255)
T ss_dssp HHHHHHSCCCSCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHhhCccccccccHhHHHHHHHhhCCCCCCEEEEe-cCCchHHHHHHHHHhCC-CeEEEEEecCHHHHHHHHHHHHHc
Confidence 4555555555567788888888888888888999999 99999999999998643 7899999999999999999998
Q ss_pred CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 89 LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 89 ~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+..++++++.+|+.+.++ .++||+|++|.. +....++.+.+.|+|||.+++..
T Consensus 142 ~~~~~v~~~~~d~~~~~~--~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 142 GFDDRVTIKLKDIYEGIE--EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp TCTTTEEEECSCGGGCCC--CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceEEEECchhhccC--CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence 666779999999997644 568999999765 34567899999999988887754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=121.16 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=86.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhc-cCC-ccE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSH-FRE-ADF 114 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l-~~~-fD~ 114 (211)
++.+|||+ |||+|..++.++... .++|+++|+++++++.|++|++ +.. ++++++.+|+.+.++.+ .++ ||+
T Consensus 53 ~~~~vLDl-GcGtG~~~~~~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDG-FAGSGSLGFEALSRQ---AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDV 128 (201)
T ss_dssp TTCEEEET-TCTTCHHHHHHHHTT---CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred CCCeEEEc-CCccCHHHHHHHHcc---CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCE
Confidence 67899999 999999999866542 4699999999999999999998 443 68999999999886643 468 999
Q ss_pred EEEcCC--cCcHHHHHHHH--HhcCCCCcEEEEEecCC
Q 041509 115 VLIDCN--LENHEGVLRAV--QAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~--~~~y~~~l~~~--~~~L~pgG~viv~dn~~ 148 (211)
|++|.. ...+.+.++.+ .++|+|||.+++..+..
T Consensus 129 I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 129 VFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 999987 34677888888 56799999888766543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=126.39 Aligned_cols=102 Identities=10% Similarity=-0.078 Sum_probs=85.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.++.+|||| |||+|+++.++++.. ..+||+||++|++++.|+++.+....+++++.+|+.+.+..+ +++||.|+.
T Consensus 59 ~~G~rVLdi-G~G~G~~~~~~~~~~---~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 59 SKGGRVLEV-GFGMAIAASKVQEAP---IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEE-CCTTSHHHHHHTTSC---EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCCeEEEE-CCCccHHHHHHHHhC---CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 467899999 999999999998653 468999999999999999998844568999999999987655 578999999
Q ss_pred cCCcC--------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLE--------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~--------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.... +...+++++.++|||||.++++
T Consensus 135 D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 96432 3577899999999998876653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=120.36 Aligned_cols=103 Identities=13% Similarity=-0.010 Sum_probs=85.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++++|||+ |||+|..+++++... ..+|+++|+++++++.|++|++ +. ++++++++|+.+.++...++||+||+
T Consensus 54 ~~~~vLDl-gcG~G~~~~~l~~~~---~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQCLDC-FAGSGALGLEALSRY---AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEEEET-TCTTCHHHHHHHHTT---CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeEEEe-CCCcCHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 67899999 899999999876542 3599999999999999999998 43 78999999999987654578999999
Q ss_pred cCC--cCcHHHHHHHHHh--cCCCCcEEEEEecC
Q 041509 118 DCN--LENHEGVLRAVQA--GNKPNGAVVVGYNA 147 (211)
Q Consensus 118 D~~--~~~y~~~l~~~~~--~L~pgG~viv~dn~ 147 (211)
|.. ...+.+.++.+.+ +|+|||.+++..+.
T Consensus 129 ~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 129 DPPFRRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 977 3467778888866 49998888776653
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=131.42 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=98.6
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC----C-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL----D-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~----~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..++++|||| |||+|+++.++++.. +.++|++||+|+++++.|++++.. + ..+++++.+|+.+.++...++|
T Consensus 106 ~~~~~~VLdI-G~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f 182 (314)
T 2b2c_A 106 HPDPKRVLII-GGGDGGILREVLKHE--SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 182 (314)
T ss_dssp SSSCCEEEEE-SCTTSHHHHHHTTCT--TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCCEEEEE-cCCcCHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCc
Confidence 4578999999 999999999998753 368999999999999999999862 2 5789999999999877556789
Q ss_pred cEEEEcCCc------CcH-HHHHHHHHhcCCCCcEEEEEec--CCCCC-c-----------eecCCCcEEEeec---CC-
Q 041509 113 DFVLIDCNL------ENH-EGVLRAVQAGNKPNGAVVVGYN--AFRKG-S-----------WRSSGSKSQLLPI---GE- 167 (211)
Q Consensus 113 D~VfiD~~~------~~y-~~~l~~~~~~L~pgG~viv~dn--~~~~~-~-----------~~~~~~~~v~lpi---g~- 167 (211)
|+|++|... ..| .++++.+.+.|+|||.+++ ++ .+... . +.+.++..+.+|. |+
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~ 261 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS-QGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSM 261 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEE-ECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE-ECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCce
Confidence 999999842 234 7899999999999776665 43 22111 0 1133445666776 45
Q ss_pred cEEEEEEe
Q 041509 168 GLLVTRIA 175 (211)
Q Consensus 168 Gl~v~~~~ 175 (211)
|+.++.+.
T Consensus 262 g~~~ask~ 269 (314)
T 2b2c_A 262 GYLICAKN 269 (314)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 77777665
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=117.63 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=83.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++.+|||+ |||+|+.+++++.. +++|+++|+++++++.|+++++ +. ++++++++++.+......++||+|+
T Consensus 21 ~~~~~vLDi-GcG~G~~~~~la~~----~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~ 94 (185)
T 3mti_A 21 DDESIVVDA-TMGNGNDTAFLAGL----SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAI 94 (185)
T ss_dssp CTTCEEEES-CCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred CCCCEEEEE-cCCCCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEE
Confidence 457899999 99999999999864 6899999999999999999998 55 7899999888765433367899999
Q ss_pred EcC-C-----------cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDC-N-----------LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~-~-----------~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+. . .......++.+.+.|+|||.+++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 883 1 12345678999999999998887653
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=115.90 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc---cCCcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH---FREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l---~~~fD 113 (211)
.++++|||+ |||+|..++.++.. ...+|+++|+++++++.|++++. +..++++++++|+.+.++.+ .++||
T Consensus 43 ~~~~~vLD~-GcG~G~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 43 FDGGMALDL-YSGSGGLAIEAVSR---GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD 118 (187)
T ss_dssp CSSCEEEET-TCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEe-CCccCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCC
Confidence 467899999 99999999988762 25799999999999999999998 55578999999999876533 57899
Q ss_pred EEEEcCC--cCcHHHHHHHH--HhcCCCCcEEEEEec
Q 041509 114 FVLIDCN--LENHEGVLRAV--QAGNKPNGAVVVGYN 146 (211)
Q Consensus 114 ~VfiD~~--~~~y~~~l~~~--~~~L~pgG~viv~dn 146 (211)
+|++|.. .....+.++.+ .++|+|||.+++..+
T Consensus 119 ~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 119 LVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp EEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 9999976 24567777777 778999888877654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=122.16 Aligned_cols=119 Identities=12% Similarity=0.037 Sum_probs=97.3
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
....+...+.+...+...++.+|||+ |||+|..+..++... +.+|+++|+++++++.|+++++ ++.++++++++
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~VLDi-GcG~G~~~~~la~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~ 93 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLRMKPGTRILDL-GSGSGEMLCTWARDH---GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 93 (256)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEE-TCTTCHHHHHHHHHT---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEE-CCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC
Confidence 34555666666566666778899999 999999999999875 5699999999999999999987 66678999999
Q ss_pred chHHHhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 100 DAQSLLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.+... .++||+|+..... .+....++.+.+.|+|||.+++.+.
T Consensus 94 d~~~~~~--~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 94 DAAGYVA--NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCTTCCC--SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ChHhCCc--CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 9987633 6899999975432 2568899999999999998888764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=119.69 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=87.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh--hccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL--SHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~--~l~~~fD~ 114 (211)
.++.+|||+ |||+|+.++.++... ++++|++||+++++++.|+++++ +. .+|+++++|+.+... ...++||+
T Consensus 69 ~~~~~vLDi-G~G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 69 NQVNTICDV-GAGAGFPSLPIKICF--PHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GGCCEEEEE-CSSSCTTHHHHHHHC--TTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCCEEEEe-cCCCCHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEeccHHHhcccccccCCccE
Confidence 367899999 999999999999764 36899999999999999999988 54 469999999988642 12578999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.++ ..++..+++.+.++|+|||.+++.+.
T Consensus 145 V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 145 VTARA-VARLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp EEEEC-CSCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred EEEec-cCCHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99988 46789999999999999998887654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=118.97 Aligned_cols=106 Identities=16% Similarity=0.034 Sum_probs=89.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+..+|||+ |||+|..++.++..+.+ .++|+++|+++++++.|+++++ +..++++++++|+.+......++||+|
T Consensus 20 ~~~~~~vLDl-GcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 20 VKEGDTVVDA-TCGNGNDTAFLASLVGE-NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp CCTTCEEEES-CCTTSHHHHHHHHHHCT-TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred CCCCCEEEEc-CCCCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence 4566899999 99999999999998743 5799999999999999999998 555789999999988754446899999
Q ss_pred EEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+... ..+.++++.+.+.|+|||.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 988632 135679999999999999888765
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=111.84 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=97.4
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
...+...+++...+...++.+|||+ |||+|..+..++... .+|+++|.++++++.|++++. +..++++++.+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldi-G~G~G~~~~~l~~~~----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d 90 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDV-GCGTGGVTLELAGRV----RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEE-SCTTSHHHHHHHTTS----SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEE-CCCCCHHHHHHHHhc----CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecC
Confidence 3345556666666677788899999 999999999988653 799999999999999999997 545789999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+.++. .++||+|+++....+....++.+.+.|+|||.+++.+
T Consensus 91 ~~~~~~~-~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 91 APEALCK-IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp HHHHHTT-SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHhccc-CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9886553 3689999999877788999999999999988877754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=119.99 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=91.4
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~ 107 (211)
.++..+....++.+|||+ |||+|..+..++... .++|+++|+++.+++.|++++. +..++++++++|+.+. +.
T Consensus 36 ~~l~~l~~~~~~~~vLDi-G~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~ 110 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADI-GCGTGGQTLFLADYV---KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-PF 110 (257)
T ss_dssp HHHTTSCCCCTTCEEEEE-TCTTSHHHHHHHHHC---CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-SS
T ss_pred HHHHHHhcCCCCCeEEEe-CCCCCHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-CC
Confidence 344444445567799999 999999999999876 3499999999999999999997 6677899999999654 32
Q ss_pred ccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 HFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..++||+|+...... +..+.++.+.+.|+|||.+++.+.
T Consensus 111 ~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 111 QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 257999999875433 578899999999999998888763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=116.77 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=93.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
..|.....+...+...++.+|||+ |||+|+.+..++.. +++|+++|+++++++.|+++++ ....+++++.+|+.
T Consensus 61 ~~~~~~~~~~~~l~~~~~~~vLdi-G~G~G~~~~~la~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~ 135 (210)
T 3lbf_A 61 SQPYMVARMTELLELTPQSRVLEI-GTGSGYQTAILAHL----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGW 135 (210)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEE-cCCCCHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcc
Confidence 356666666666677788999999 99999999999986 5899999999999999999998 22347999999998
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+..+. .++||+|+++.....+. +.+.+.|+|||.+++....
T Consensus 136 ~~~~~-~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 136 QGWQA-RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCGG-GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEEECS
T ss_pred cCCcc-CCCccEEEEccchhhhh---HHHHHhcccCcEEEEEEcC
Confidence 86553 68999999997665443 3567889999888775543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=114.69 Aligned_cols=119 Identities=11% Similarity=0.032 Sum_probs=94.3
Q ss_pred ChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC----cEEEEE
Q 041509 25 EPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS----HVEFVI 98 (211)
Q Consensus 25 ~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~----~V~~~~ 98 (211)
.+...+++..++...++.+|||+ |||+|..+.++++..+ ..+|+++|+++++++.|++++. ++.+ +++++.
T Consensus 14 ~~~~~~~l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 90 (217)
T 3jwh_A 14 NQQRMNGVVAALKQSNARRVIDL-GCGQGNLLKILLKDSF--FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90 (217)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEE-TCTTCHHHHHHHHCTT--CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEe-CCCCCHHHHHHHhhCC--CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence 34555666666777788999999 9999999999987542 4799999999999999999987 4333 899999
Q ss_pred cchHHHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 99 GDAQSLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+|+... +...++||+|+...... .+..+++.+.+.|+|||.+++.+|.
T Consensus 91 ~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 91 GALTYQ-DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp CCTTSC-CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred CCcccc-cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 998543 32257999999876432 4578999999999999987777663
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=121.88 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=94.8
Q ss_pred HHHHHHHHhhC-CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 29 AEFISALAAGN-NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
+.+|..++... ++++|||+ |||+|..++.++... .++|+++|+++++++.|++|+. ++.++++++++|+.+..
T Consensus 37 ~~ll~~~~~~~~~~~~vLDl-G~G~G~~~~~la~~~---~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~ 112 (259)
T 3lpm_A 37 AVLLAKFSYLPIRKGKIIDL-CSGNGIIPLLLSTRT---KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112 (259)
T ss_dssp HHHHHHHCCCCSSCCEEEET-TCTTTHHHHHHHTTC---CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEc-CCchhHHHHHHHHhc---CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh
Confidence 66788888777 78999999 999999999998763 3499999999999999999998 66778999999999886
Q ss_pred hhc-cCCccEEEEcCCc-----------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 106 LSH-FREADFVLIDCNL-----------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 106 ~~l-~~~fD~VfiD~~~-----------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+ .++||+|+.|.+- ..+.++++.+.++|+|||.++++.
T Consensus 113 ~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 113 DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp GTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 533 5799999997432 124678999999999999888854
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=125.22 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=101.2
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
...|...+..+.....|.....+...+...++.+|||+ |||+|+.++.++....+ .++|+++|+++++++.|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~VLDi-G~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~ 152 (336)
T 2b25_A 75 LEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEA-GSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKH 152 (336)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCCcccCHHHHHHHHHhcCCCCCCEEEEe-CCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 34555556656667788866666666677788999999 99999999999987643 5899999999999999999986
Q ss_pred -C----------CCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 89 -L----------DASHVEFVIGDAQSLLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 89 -~----------~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ ...+++++.+|+.+.+..+ .++||+||+|... ....++.+.+.|+|||.+++..
T Consensus 153 ~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~--~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 153 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp HHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEEE
T ss_pred hhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 2 2468999999998864333 4589999998653 3347889999999988887654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=122.77 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=105.1
Q ss_pred HHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 9 ATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 9 ~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
....|.+.+......+.|.....+...+...++.+|||+ |||+|..++.++..+.+ +++|+++|+++++++.|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDi-G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~ 158 (277)
T 1o54_A 81 SLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDT-GVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLT 158 (277)
T ss_dssp CHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHH
T ss_pred CHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEE-CCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHH
Confidence 344555555544456777777777777777788899999 99999999999988643 6899999999999999999997
Q ss_pred --CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 89 --LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 89 --~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..++++++.+|+.+.++ .++||+|++|.. +..+.++.+.+.|+|||.+++...
T Consensus 159 ~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 159 KWGLIERVTIKVRDISEGFD--EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp HTTCGGGEEEECCCGGGCCS--CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred HcCCCCCEEEEECCHHHccc--CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 545789999999988743 468999999764 345778888999999888887664
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=124.13 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=85.4
Q ss_pred CCC--eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 40 NAQ--LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 40 ~~~--~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
+++ +|||| |||+|+++.++++..+ +.+|++||+|+++++.||+++. ....+++++++|+.+.+... .++||+|
T Consensus 87 ~p~~~rVLdI-G~G~G~la~~la~~~p--~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 87 DASKLRITHL-GGGACTMARYFADVYP--QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp CGGGCEEEEE-SCGGGHHHHHHHHHST--TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CCCCCEEEEE-ECCcCHHHHHHHHHCC--CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEE
Confidence 445 99999 9999999999998764 5699999999999999999998 33578999999999998754 5789999
Q ss_pred EEcCCcCc-------HHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLEN-------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~-------y~~~l~~~~~~L~pgG~viv 143 (211)
++|..... ..++++.+.+.|+|||.+++
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~ 198 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA 198 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99964321 27899999999999887665
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=116.31 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
+++...+++.......++++|||+ ||| +|..++.++... +++|+++|+++++++.|++|+. +. +++++++|
T Consensus 39 ~p~~~~~~l~~~~~~~~~~~vLDl-G~G~~G~~~~~la~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d 112 (230)
T 3evz_A 39 VTTPISRYIFLKTFLRGGEVALEI-GTGHTAMMALMAEKFF---NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSN 112 (230)
T ss_dssp CCCHHHHHHHHHTTCCSSCEEEEE-CCTTTCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECS
T ss_pred eCCCchhhhHhHhhcCCCCEEEEc-CCCHHHHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCC
Confidence 344445655433344577899999 999 999999999875 5799999999999999999998 43 89999999
Q ss_pred hHHHhhhccCCccEEEEcCCc----------------------CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 101 AQSLLLSHFREADFVLIDCNL----------------------ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~----------------------~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+....+...++||+|+.+.+. ..+.++++.+.++|+|||.+++.
T Consensus 113 ~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 113 GGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp SCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred chhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 753322224799999988432 12578999999999999888774
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=125.84 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=99.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..++++|||| |||+|+++.++++.. +..+|++||+|+++++.|++++. ++ ..+++++++|+.+.++...++|
T Consensus 93 ~~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 93 HPNPRKVLII-GGGDGGVLREVVKHP--SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SSSCCEEEEE-ECTTSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCCCEEEEE-CCCchHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCc
Confidence 3578999999 999999999998753 25899999999999999999985 23 5789999999999887656799
Q ss_pred cEEEEcCCcC-------cHHHHHHHHHhcCCCCcEEEEEec-CCCCC-c------------eecCCCcEEEeec---C-C
Q 041509 113 DFVLIDCNLE-------NHEGVLRAVQAGNKPNGAVVVGYN-AFRKG-S------------WRSSGSKSQLLPI---G-E 167 (211)
Q Consensus 113 D~VfiD~~~~-------~y~~~l~~~~~~L~pgG~viv~dn-~~~~~-~------------~~~~~~~~v~lpi---g-~ 167 (211)
|+||+|.... .+.++++.+.+.|+|||.+++ ++ ..+.. . +.+.++..+.+|. | .
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~ 248 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC-QGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQI 248 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEE-EEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE-ecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcce
Confidence 9999998642 246789999999999776665 44 22221 1 1233444556776 3 3
Q ss_pred cEEEEEEe
Q 041509 168 GLLVTRIA 175 (211)
Q Consensus 168 Gl~v~~~~ 175 (211)
|+.++.+.
T Consensus 249 g~~~as~~ 256 (304)
T 2o07_A 249 GFMLCSKN 256 (304)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 77777654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=118.33 Aligned_cols=103 Identities=10% Similarity=-0.071 Sum_probs=82.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.+..+|||+ |||+|+.+..++... ..+|+++|+++++++.|+++.+....+++++++|+.+.++.+ +++||+|+.
T Consensus 59 ~~~~~vLDi-GcGtG~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 59 SKGGRVLEV-GFGMAIAASKVQEAP---IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEE-CCTTSHHHHHHHTSC---EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCeEEEE-eccCCHHHHHHHhcC---CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence 456789999 999999999996532 359999999999999999998733478999999999875433 578999999
Q ss_pred cCCc--------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNL--------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~--------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|... ......++++.++|+|||.+++++
T Consensus 135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 5322 123467899999999988877654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=122.22 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHH
Q 041509 25 EPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQS 103 (211)
Q Consensus 25 ~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e 103 (211)
.+...+.+..+....+.++|||+ |||+|..++.+|...+ +++|+++|.++++++.|++|++ ...++++++++|+.+
T Consensus 104 ~~~~~e~~~~~~~~~~~~~VLDl-gcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~ 180 (272)
T 3a27_A 104 QGNIEERKRMAFISNENEVVVDM-FAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRD 180 (272)
T ss_dssp GGGHHHHHHHHTSCCTTCEEEET-TCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGG
T ss_pred CCchHHHHHHHHhcCCCCEEEEe-cCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHH
Confidence 34444555545555677899999 9999999999998753 5799999999999999999998 334579999999998
Q ss_pred HhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 104 LLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
. +. .++||+|++|... .+.+.++.+.+.|+|||.+++.++..
T Consensus 181 ~-~~-~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 181 V-EL-KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp C-CC-TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c-Cc-cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 7 54 6789999999876 67788999999999999888877654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=119.62 Aligned_cols=126 Identities=11% Similarity=0.050 Sum_probs=100.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
++.....++..++...++.+|||+ |||+|..|+.+++.++. .++|+++|+++.+++.+++|++ ....+++++++|+.
T Consensus 67 ~qd~~s~l~~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~~-~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~ 144 (274)
T 3ajd_A 67 PQSISSMIPPIVLNPREDDFILDM-CAAPGGKTTHLAQLMKN-KGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMR 144 (274)
T ss_dssp ECCSGGGHHHHHHCCCTTCEEEET-TCTTCHHHHHHHHHTTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred EeCHHHHHHHHHhCCCCcCEEEEe-CCCccHHHHHHHHHcCC-CCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChH
Confidence 444455566666777788899999 79999999999987642 4899999999999999999998 22348999999998
Q ss_pred HHhhhc---cCCccEEEEcCCc---------------------CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLSH---FREADFVLIDCNL---------------------ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~l---~~~fD~VfiD~~~---------------------~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+....+ .++||.|++|++- ..+.++++.+.+.|+|||.+++....+.+.
T Consensus 145 ~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ 217 (274)
T 3ajd_A 145 KYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE 217 (274)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred hcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH
Confidence 875432 5789999999432 245788999999999999988877666543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=109.81 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=83.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc---cCCccE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH---FREADF 114 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l---~~~fD~ 114 (211)
++++|||+ |||+|..++.++.. +.+|+++|+++++++.|++++. +. +++++++|+.+.++.. .++||+
T Consensus 41 ~~~~vLD~-GcG~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~ 113 (171)
T 1ws6_A 41 RRGRFLDP-FAGSGAVGLEAASE----GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCCEEEEE-TCSSCHHHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEe-CCCcCHHHHHHHHC----CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEE
Confidence 67899999 99999999999875 3349999999999999999998 44 8999999999876543 238999
Q ss_pred EEEcCCc-CcHHHHHHHHH--hcCCCCcEEEEEecCC
Q 041509 115 VLIDCNL-ENHEGVLRAVQ--AGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~~-~~y~~~l~~~~--~~L~pgG~viv~dn~~ 148 (211)
|+++... ....+.++.+. +.|+|||.+++..+..
T Consensus 114 i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 9999644 45567777777 8999998887766543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=119.43 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=87.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..++.. ..++|+++|+++.+++.|+++++ +..++++++++|+.+. +...++||+|
T Consensus 44 ~~~~~~vLDi-GcG~G~~~~~la~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADI-GCGTGGQTMVLAGH---VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-PFRNEELDLI 118 (267)
T ss_dssp CCTTCEEEEE-TCTTCHHHHHHHTT---CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEE
T ss_pred CCCCCEEEEe-CCCCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-CCCCCCEEEE
Confidence 4567899999 99999999999876 25799999999999999999987 6668899999999764 3225799999
Q ss_pred EEcCCcC--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+...... +....++.+.+.|+|||.+++.+-
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 119 WSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp EESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9876433 568899999999999998888664
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=116.53 Aligned_cols=131 Identities=21% Similarity=0.182 Sum_probs=105.0
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
...|...+......+.+.....+...+...++.+|||+ |||+|..++.++..+.+ +++|+++|.++++++.|+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~ 143 (258)
T 2pwy_A 66 LEEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEA-GTGSGGLTLFLARAVGE-KGLVESYEARPHHLAQAERNVRA 143 (258)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHhhcCccccccccchHHHHHHHHcCCCCCCEEEEE-CCCcCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 34566665555566777777766667777788899999 99999999999988643 6899999999999999999987
Q ss_pred C-CCCcEEEEEcchHHH-hhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 89 L-DASHVEFVIGDAQSL-LLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 89 ~-~~~~V~~~~gda~e~-l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. ..++++++.+|+.+. ++ .++||+|++|.. +....++.+.+.|+|||.+++...
T Consensus 144 ~~g~~~v~~~~~d~~~~~~~--~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 144 FWQVENVRFHLGKLEEAELE--EAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp HCCCCCEEEEESCGGGCCCC--TTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred hcCCCCEEEEECchhhcCCC--CCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 2 357899999999876 33 468999999764 445788899999999988887663
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.6e-14 Score=112.77 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=86.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
.+..+|||+ |||+|..++.++...+ +.++++||+++++++.|++++. ++ ++++++.+|+.+....+ .++||+|
T Consensus 40 ~~~~~vLDi-GcG~G~~~~~la~~~p--~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 40 NDNPIHVEV-GSGKGAFVSGMAKQNP--DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp SCCCEEEEE-SCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCCeEEEE-ccCcCHHHHHHHHHCC--CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 456789999 9999999999998864 6899999999999999999997 54 78999999998743212 5689999
Q ss_pred EEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++.... .+..+++.+.+.|+|||.+++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 9986532 246899999999999998887653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=105.01 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=93.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
..+...+.+...+...++.+|||+ |||+|..+..++. .+.+++++|+++++++.|+++++ ...++++++++|+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~vLdi-G~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 93 (183)
T 2yxd_A 19 TKEEIRAVSIGKLNLNKDDVVVDV-GCGSGGMTVEIAK----RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAE 93 (183)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEE-SCCCSHHHHHHHT----TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred CHHHHHHHHHHHcCCCCCCEEEEe-CCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcc
Confidence 345555666666666778899999 9999999999987 26899999999999999999998 22367999999999
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.++ .++||+|+++.. .+..+.++.+.+. |||.+++.+
T Consensus 94 ~~~~--~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 94 DVLD--KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp HHGG--GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred cccc--CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEe
Confidence 8554 379999999988 7788999999987 889888866
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=117.05 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=85.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhh-c-cCCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLS-H-FREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~-l-~~~fD~Vf 116 (211)
+..+|||| |||+|.+++.+|...+ +..|++||+++++++.|+++++ ....+++++.+|+.+.++. + .++||.|+
T Consensus 34 ~~~~vLDi-GcG~G~~~~~lA~~~p--~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~ 110 (218)
T 3dxy_A 34 EAPVTLEI-GFGMGASLVAMAKDRP--EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQ 110 (218)
T ss_dssp CCCEEEEE-SCTTCHHHHHHHHHCT--TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred CCCeEEEE-eeeChHHHHHHHHHCC--CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence 66789999 9999999999998764 6899999999999999999987 3345799999999998764 2 67999999
Q ss_pred EcC---CcC--cH------HHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDC---NLE--NH------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~---~~~--~y------~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.. ... .. ..+++.+.+.|+|||.+++..|
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 862 211 11 3599999999999999888765
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=122.97 Aligned_cols=104 Identities=19% Similarity=0.143 Sum_probs=88.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C-C-CCcEEEEEcchHHHhhhccCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L-D-ASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~-~-~~~V~~~~gda~e~l~~l~~~ 111 (211)
..++++|||| |||+|..+.++++.. +..+|++||+|+++++.|++++. + + ..+++++++|+.+.++...++
T Consensus 75 ~~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 151 (314)
T 1uir_A 75 HPEPKRVLIV-GGGEGATLREVLKHP--TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER 151 (314)
T ss_dssp SSCCCEEEEE-ECTTSHHHHHHTTST--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred CCCCCeEEEE-cCCcCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCC
Confidence 4578999999 999999999998753 36799999999999999999985 1 2 468999999999987765789
Q ss_pred ccEEEEcCCcCc----------HHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLEN----------HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~----------y~~~l~~~~~~L~pgG~viv~ 144 (211)
||+|++|..... ..++++.+.+.|+|||.+++.
T Consensus 152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 999999975543 578999999999998877764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-14 Score=118.53 Aligned_cols=102 Identities=11% Similarity=-0.044 Sum_probs=86.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh--ccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS--HFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~--l~~~fD~V 115 (211)
++.+|||+ |||+|+.++.+|...+ +++|++||+++++++.|++|++ ++ .+|+++++|+.+.... ..++||+|
T Consensus 80 ~~~~vLDi-G~G~G~~~i~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~l-~~v~~~~~d~~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 80 GPLRVLDL-GTGAGFPGLPLKIVRP--ELELVLVDATRKKVAFVERAIEVLGL-KGARALWGRAEVLAREAGHREAYARA 155 (249)
T ss_dssp SSCEEEEE-TCTTTTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred CCCEEEEE-cCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEECcHHHhhcccccCCCceEE
Confidence 56799999 9999999999998763 6899999999999999999998 54 4599999999987542 24799999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..+- .++..+++.+.++|+|||.+++...
T Consensus 156 ~s~a~-~~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 156 VARAV-APLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEESS-CCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred EECCc-CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98764 4578899999999999988877654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=118.21 Aligned_cols=101 Identities=10% Similarity=0.019 Sum_probs=86.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||| |||+|..+..+++.. +.+|+++|+++++++.|++++. ++.++++++.+|+.+. .++||+|
T Consensus 70 ~~~~~~vLDi-GcG~G~~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v 141 (302)
T 3hem_A 70 LEPGMTLLDI-GCGWGSTMRHAVAEY---DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPVDRI 141 (302)
T ss_dssp CCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCCSEE
T ss_pred CCCcCEEEEe-eccCcHHHHHHHHhC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCccEE
Confidence 3567799999 999999999999875 3799999999999999999997 6677999999999865 5899999
Q ss_pred EEcCC------------cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCN------------LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~------------~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.... .+++..+++.+.+.|+|||.+++.+-
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 98642 24568999999999999999888654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=121.20 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=88.6
Q ss_pred HHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC-cEEEEEcchHHHhh
Q 041509 31 FISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS-HVEFVIGDAQSLLL 106 (211)
Q Consensus 31 lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~-~V~~~~gda~e~l~ 106 (211)
++..++. ..++++|||+ |||+|..++.++.. +.+|++||+++.+++.|++|++ ++.+ +++++++|+.+.++
T Consensus 143 ~l~~~~~~~~~~~~VLDl-gcGtG~~sl~la~~----ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~ 217 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNL-FGYTGVASLVAAAA----GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ 217 (332)
T ss_dssp HHHHHHHHSSSCCEEEEE-TCTTCHHHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEc-ccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHH
Confidence 3445544 3456799999 89999999999874 4599999999999999999998 5554 59999999999876
Q ss_pred hc---cCCccEEEEcCCc-------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 107 SH---FREADFVLIDCNL-------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 107 ~l---~~~fD~VfiD~~~-------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+ .++||+|++|.+. ..|.++++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 218 REERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp HHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 43 4689999999762 136788999999999999866543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=120.51 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=85.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhccCCcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l~~~fD 113 (211)
.++++|||| |||+|..+..+++.. +..+|++||+||++++.|++++. ++ ..+++++++|+.+.++...++||
T Consensus 74 ~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVV-GGGDGGVIREILKHP--SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SSCCEEEEE-SCTTCHHHHHHTTCT--TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCCEEEEE-CCchHHHHHHHHhCC--CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee
Confidence 468999999 999999999887642 25799999999999999999984 23 46899999999998875567999
Q ss_pred EEEEcCCcCc-------HHHHHHHHHhcCCCCcEEEE
Q 041509 114 FVLIDCNLEN-------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 114 ~VfiD~~~~~-------y~~~l~~~~~~L~pgG~viv 143 (211)
+|++|..... -.++++.+.+.|+|||.+++
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9999975431 26899999999999887665
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=113.03 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC----cEEEEEc
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS----HVEFVIG 99 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~----~V~~~~g 99 (211)
+...+++..++...++++|||+ |||+|..+.+++...+ ..+|+++|+++++++.|++++. ++.+ +++++.+
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNAKKVIDL-GCGEGNLLSLLLKDKS--FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE-TCTTCHHHHHHHTSTT--CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHhhcCCCEEEEe-cCCCCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence 4445566666666788999999 9999999999987542 4799999999999999999987 4433 8999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|+... +...++||+|+...... ....+++.+.+.|+|||.++...|.
T Consensus 92 d~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 92 SLVYR-DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp CSSSC-CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred ccccc-ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 98543 32357999999765332 3368899999999999877776654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-14 Score=114.30 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=102.5
Q ss_pred HHHHHHHH-hhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh
Q 041509 9 ATKAYLKT-LKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL 87 (211)
Q Consensus 9 ~~~ay~~~-~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~ 87 (211)
....+.+. +......+.|.....+...+...++.+|||+ |||+|..++.+++. +++|+++|+++++++.|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldi-G~G~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~ 133 (248)
T 2yvl_A 59 TLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEF-GTGSGALLAVLSEV----AGEVWTFEAVEEFYKTAQKNL 133 (248)
T ss_dssp CHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEe-CCCccHHHHHHHHh----CCEEEEEecCHHHHHHHHHHH
Confidence 34445533 2223345678777777777777788999999 99999999999987 579999999999999999999
Q ss_pred c--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 88 G--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 88 ~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+ +..++++++.+|+.+.... .++||+||.+.. +....++.+.+.|+|||.+++...
T Consensus 134 ~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 134 KKFNLGKNVKFFNVDFKDAEVP-EGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp HHTTCCTTEEEECSCTTTSCCC-TTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred HHcCCCCcEEEEEcChhhcccC-CCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7 5557899999999876411 468999999765 445678888999999998888664
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=119.61 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=85.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---C--------CCCcEEEEEcchHHHh
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---L--------DASHVEFVIGDAQSLL 105 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~--------~~~~V~~~~gda~e~l 105 (211)
...++++|||| |||+|..+.++++. + .++|++||+||++++.|+++++ + ...+++++.+|+.+.+
T Consensus 72 ~~~~~~~VLdi-G~G~G~~~~~l~~~-~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 72 AHPKPKRVLVI-GGGDGGTVREVLQH-D--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp HSSCCCEEEEE-ECTTSHHHHHHTTS-C--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred hCCCCCeEEEE-cCCcCHHHHHHHhC-C--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHh
Confidence 34578999999 99999999999875 2 5899999999999999999982 1 2468999999999988
Q ss_pred hhccCCccEEEEcCCc------Cc-HHHHHHHHHhcCCCCcEEEEE
Q 041509 106 LSHFREADFVLIDCNL------EN-HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~------~~-y~~~l~~~~~~L~pgG~viv~ 144 (211)
+. .++||+|++|... .. ..++++.+.+.|+|||.+++.
T Consensus 148 ~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 148 KN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp HH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 76 7899999999863 11 478999999999998877663
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=115.74 Aligned_cols=111 Identities=6% Similarity=-0.034 Sum_probs=89.9
Q ss_pred HHHHHhhCC-CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 32 ISALAAGNN-AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 32 L~~l~~~~~-~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
|..++...+ +.+|+|| |||+|+.++.+|...+ .++|+++|++|.+++.|++|++ ++.++|+++.||+.+.++.
T Consensus 6 L~~l~~~v~~g~~VlDI-GtGsG~l~i~la~~~~--~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~- 81 (225)
T 3kr9_A 6 LELVASFVSQGAILLDV-GSDHAYLPIELVERGQ--IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE- 81 (225)
T ss_dssp HHHHHTTSCTTEEEEEE-TCSTTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-
T ss_pred HHHHHHhCCCCCEEEEe-CCCcHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-
Confidence 455555444 5689999 9999999999998642 5799999999999999999998 6778899999999887653
Q ss_pred cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||.|++.+.-. ...+.++.+.+.|+|+|.+++.-+
T Consensus 82 ~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 82 TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 33799999865433 357889999999999888887555
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-14 Score=119.08 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC-----CCCcEEEEEcchH
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL-----DASHVEFVIGDAQ 102 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~-----~~~~V~~~~gda~ 102 (211)
.+.+|..++...++.+|||+ |||+|..++.++...+ +.+|++||+++++++.|++|+.. +.++++++++|+.
T Consensus 24 D~~lL~~~~~~~~~~~VLDl-G~G~G~~~l~la~~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~ 100 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADL-GAGAGAAGMAVAARLE--KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVT 100 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEEC-CSSSSHHHHHHHHHCT--TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTT
T ss_pred HHHHHHHHhcccCCCEEEEe-CChHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHH
Confidence 45677777777778899999 9999999999998763 58999999999999999999863 3457999999998
Q ss_pred HHhhh-----c-cCCccEEEEcCCc---------------------CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 103 SLLLS-----H-FREADFVLIDCNL---------------------ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~-----l-~~~fD~VfiD~~~---------------------~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.++. + .++||+|+.+.+. ..+..+++.+.++|+|||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 101 LRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 87431 1 4689999998421 2367889999999999998877553
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-14 Score=115.18 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=90.0
Q ss_pred CChhHHHH-HHHHH-hhCCCCeEEEEccccHHHHHHHHHHHcc---CCCcEEEEEeCChhHHHHHHHHhc--CC----CC
Q 041509 24 KEPNEAEF-ISALA-AGNNAQLMVVACANVANATTLALAAAAH---QTGGRVVCILRRVEEYKLSKKILG--LD----AS 92 (211)
Q Consensus 24 ~~~~~~~l-L~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~---~~~g~v~tiE~~~~~~~~Ar~~~~--~~----~~ 92 (211)
..|..... +..+. ...++.+|||+ |||+|+.+..+++... .+.++|+++|+++++++.|+++++ +. ..
T Consensus 62 ~~p~~~~~~~~~l~~~~~~~~~VLdi-G~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 140 (227)
T 2pbf_A 62 SAPHMHALSLKRLINVLKPGSRAIDV-GSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID 140 (227)
T ss_dssp CCHHHHHHHHHHHTTTSCTTCEEEEE-SCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSST
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEEE-CCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccC
Confidence 44555444 34443 35567899999 9999999999998763 025799999999999999999987 42 46
Q ss_pred cEEEEEcchHHHh----hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 93 HVEFVIGDAQSLL----LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 93 ~V~~~~gda~e~l----~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++++.+|+.+.. .. .++||+|++++.... +++.+.+.|+|||.+++.-
T Consensus 141 ~v~~~~~d~~~~~~~~~~~-~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 141 NFKIIHKNIYQVNEEEKKE-LGLFDAIHVGASASE---LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp TEEEEECCGGGCCHHHHHH-HCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECChHhcccccCcc-CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence 8999999998754 32 578999999987663 3567778889988877754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=118.29 Aligned_cols=130 Identities=19% Similarity=0.171 Sum_probs=102.8
Q ss_pred HHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C
Q 041509 11 KAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L 89 (211)
Q Consensus 11 ~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~ 89 (211)
..|...+......+.|.....+...+...++.+|||+ |||+|..++.++..+.+ +++|+++|+++++++.|+++++ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~ 147 (280)
T 1i9g_A 70 VDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEA-GAGSGALTLSLLRAVGP-AGQVISYEQRADHAEHARRNVSGC 147 (280)
T ss_dssp HHHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHhhccccceeecHHHHHHHHHHcCCCCCCEEEEE-cccccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3455555444456777777766666677788899999 99999999999987643 6899999999999999999986 2
Q ss_pred ---CCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 90 ---DASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 90 ---~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.++++++.+|+.+... ..++||+|++|.. +..++++.+.+.|+|||.+++..
T Consensus 148 ~g~~~~~v~~~~~d~~~~~~-~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 148 YGQPPDNWRLVVSDLADSEL-PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp HTSCCTTEEEECSCGGGCCC-CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCcEEEEECchHhcCC-CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence 25789999999987621 1568999999765 34578899999999988887755
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-14 Score=121.20 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=100.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....++..++...++.+|||+ |||+|..|+.+++.++. .++|+++|+++.+++.+++|++ +. .+++++++|
T Consensus 101 ~~qd~~s~l~~~~l~~~~g~~VLDl-g~G~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~~~~~~g~-~~v~~~~~D 177 (315)
T 1ixk_A 101 YIQEASSMYPPVALDPKPGEIVADM-AAAPGGKTSYLAQLMRN-DGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSS 177 (315)
T ss_dssp EECCHHHHHHHHHHCCCTTCEEEEC-CSSCSHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSC
T ss_pred EEeCHHHHHHHHHhCCCCCCEEEEe-CCCCCHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CeEEEEECC
Confidence 4556666677777777788899999 79999999999988743 6899999999999999999998 54 479999999
Q ss_pred hHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 101 AQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+.+... ..++||.|++|++-. .+.++++.+.++|+|||.+++....+.+
T Consensus 178 ~~~~~~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~ 251 (315)
T 1ixk_A 178 SLHIGE-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 251 (315)
T ss_dssp GGGGGG-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred hhhccc-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 988754 467899999996411 0257889999999999988887765544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=124.06 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC-cEEEEEcchHHHhhhc---cCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS-HVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~-~V~~~~gda~e~l~~l---~~~f 112 (211)
.++++|||+ |||+|..++++|... ..+|++||+++++++.|++|++ ++.+ +++|+++|+.+.++.+ .++|
T Consensus 211 ~~~~~VLDl-~cGtG~~sl~la~~g---a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 211 AAGKTVLNL-FSYTAAFSVAAAMGG---AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp TBTCEEEEE-TCTTTHHHHHHHHTT---BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEE-eeccCHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCc
Confidence 467899999 899999999998741 3599999999999999999998 5544 8999999999987654 3589
Q ss_pred cEEEEcCCcC------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNLE------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~~------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+|++|.+.- .|.++++.+.++|+|||.+++..|..
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999997541 35667788889999999888877644
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-14 Score=124.00 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=88.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhc-cCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l-~~~ 111 (211)
..++++|||| |||+|..+.++++.. +..+|++||+++++++.|++++. ++ ..+++++++|+.+.++.. .++
T Consensus 118 ~~~~~~VLdI-G~G~G~~a~~la~~~--~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 118 IPNPKKVLVI-GGGDGGVLREVARHA--SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SSCCCEEEEE-TCSSSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCCEEEEE-CCCccHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCC
Confidence 3578999999 999999999998753 25899999999999999999985 23 468999999999987654 478
Q ss_pred ccEEEEcCCcC----c---HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 112 ADFVLIDCNLE----N---HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 112 fD~VfiD~~~~----~---y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
||+|++|.... . +.++++.+.+.|+|||.+++..+..+
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 99999997521 1 57899999999999887666434443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=116.24 Aligned_cols=106 Identities=10% Similarity=0.045 Sum_probs=89.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--hhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--LSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~fD~V 115 (211)
..++.+|||+ |||+|+++..+|....+ .|+|+++|++|++++.++++.+. ..++..+.+|+.+.. +.+.+.+|+|
T Consensus 75 ikpG~~Vldl-G~G~G~~~~~la~~VG~-~G~V~avD~s~~~~~~l~~~a~~-~~ni~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 75 VKEGDRILYL-GIASGTTASHMSDIIGP-RGRIYGVEFAPRVMRDLLTVVRD-RRNIFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp CCTTCEEEEE-TCTTSHHHHHHHHHHCT-TCEEEEEECCHHHHHHHHHHSTT-CTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEe-cCcCCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhHh-hcCeeEEEEeccCccccccccceEEEE
Confidence 5678999999 99999999999999865 89999999999999999998773 357999999986542 3236789999
Q ss_pred EEcCCcC-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|.|.... +....++.+.+.|+|||.++++..
T Consensus 152 f~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 152 YADVAQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp EECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeccCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 9997665 456789999999999999888653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-14 Score=110.16 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC-cEEEEEcchHHH
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS-HVEFVIGDAQSL 104 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~-~V~~~~gda~e~ 104 (211)
..+.+...+...++.+|||+ |||+|..+..++.. +.+++++|+++++++.|++++. +..+ +++++.+|+.+.
T Consensus 40 ~~~~l~~~~~~~~~~~vLdi-G~G~G~~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 114 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDL-GCGYGVIGIALADE----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEE-TCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred HHHHHHHHcccCCCCeEEEe-CCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc
Confidence 44555555566678899999 99999999988865 5799999999999999999997 4333 599999999875
Q ss_pred hhhccCCccEEEEcCCc----CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 105 LLSHFREADFVLIDCNL----ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~----~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++ .++||+|+++... ......++.+.+.|+|||.+++.+.
T Consensus 115 ~~--~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 115 VK--DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 44 5789999998753 3457889999999999998888664
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=120.67 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=91.7
Q ss_pred HHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-
Q 041509 12 AYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L- 89 (211)
Q Consensus 12 ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~- 89 (211)
.|...+......+.+...+++...+...++.+|||+ |||+|..++.+++.+.+ +++|+++|+++++++.|+++++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~-G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~ 159 (275)
T 1yb2_A 82 YFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEV-GVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFY 159 (275)
T ss_dssp GHHHHC------------------CCCCTTCEEEEE-CCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred HHHhhccccccccChhhHHHHHHHcCCCCcCEEEEe-cCCCCHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhcC
Confidence 344444433345566666666666677778899999 99999999999987533 6899999999999999999997 3
Q ss_pred CCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 90 DASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 90 ~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
..++++++.+|+.+.++ .++||+|++|.. +..+.++.+.+.|+|||.+++.+..
T Consensus 160 g~~~v~~~~~d~~~~~~--~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 160 DIGNVRTSRSDIADFIS--DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp CCTTEEEECSCTTTCCC--SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred CCCcEEEEECchhccCc--CCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 34689999999987433 468999999754 4567899999999999988887643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=113.12 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=85.7
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--hhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--LSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~fD~V 115 (211)
..+..+|||+ |||+|..++.++..+++ +++|+++|.++++++.++++.+.. .+++++.+|+.+.. ..+.++||+|
T Consensus 71 ~~~~~~vLDl-G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 71 IKPGKSVLYL-GIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEE-TTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEE-eccCCHHHHHHHHHhCC-CeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEE
Confidence 3457799999 99999999999988643 589999999999999999998843 68999999998742 2235689999
Q ss_pred EEcCCcCcHHH-HHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEG-VLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~-~l~~~~~~L~pgG~viv~ 144 (211)
++|....+... +++.+.+.|+|||.+++.
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 148 FEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 99987555544 499999999999888775
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=123.18 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=91.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc---cCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l---~~~f 112 (211)
.++++|||+ |||+|..++.+|... .++|+++|+++++++.|++|++ +. .++++++.+|+.+.++.+ .++|
T Consensus 219 ~~~~~VLDl-~cG~G~~sl~la~~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNC-FSYTGGFAVSALMGG---CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEE-SCTTCSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEe-eccCCHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 577899999 899999999998741 4699999999999999999998 54 448999999999987654 4689
Q ss_pred cEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 113 DFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 113 D~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|+|++|.+. ..|.+.+..+.+.|+|||.++++.|...
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 999999765 5678899999999999998888776543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=111.58 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=84.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
.+..+|||| |||+|..++.||...+ +.+|++||+++++++.|++++. ....+|+++.+|+.++...+ .+.||.|+
T Consensus 37 ~~~~~vLDi-GcG~G~~~~~la~~~p--~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~ 113 (213)
T 2fca_A 37 NDNPIHIEV-GTGKGQFISGMAKQNP--DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVY 113 (213)
T ss_dssp SCCCEEEEE-CCTTSHHHHHHHHHCT--TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CCCceEEEE-ecCCCHHHHHHHHHCC--CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence 456789999 9999999999998763 6899999999999999999987 32367999999998853222 56899999
Q ss_pred EcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~-----------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+..... .+..+++.+.+.|+|||.+++..
T Consensus 114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 864211 14789999999999999988765
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=110.67 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e 103 (211)
+...+.+...+.. ++.+|||+ |||+|..+..++.. .+.+++++|+++++++.|+++++ +...+++++++|+.+
T Consensus 30 ~~~~~~~~~~~~~-~~~~vLdi-G~G~G~~~~~l~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 30 PIIAENIINRFGI-TAGTCIDI-GSGPGALSIALAKQ---SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHHCC-CEEEEEEE-TCTTSHHHHHHHHH---SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHHhcCC-CCCEEEEE-CCCCCHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 3334444444433 33499999 99999999999987 26799999999999999999998 556789999999987
Q ss_pred HhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 104 LLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. +...++||+|+..... .+....++.+.+.|+|||.+++.+.
T Consensus 105 ~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 105 I-PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp C-SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C-CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence 4 3225799999998643 3568899999999999998888653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=120.23 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=85.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..++++|||+ |||+|..+..+++.. +.++|++||+|+++++.|++++. ++ ..+++++++|+.+.++...++|
T Consensus 88 ~~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 164 (296)
T 1inl_A 88 HPNPKKVLII-GGGDGGTLREVLKHD--SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 164 (296)
T ss_dssp SSSCCEEEEE-ECTTCHHHHHHTTST--TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred CCCCCEEEEE-cCCcCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCc
Confidence 3567899999 999999999988653 25899999999999999999984 23 4689999999999876556789
Q ss_pred cEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+|++|.... ...++++.+.+.|+|||.+++.
T Consensus 165 D~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 165 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9999997533 2378999999999998877663
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=126.93 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=105.0
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
+...++.....++..++...++.+|||+ |||+|..|+.||+.++. .|+|+++|+++++++.+++|++ +. .+|+++
T Consensus 85 G~~~vQd~ss~l~~~~L~~~~g~~VLDl-caGpGgkt~~lA~~~~~-~g~V~AvDis~~rl~~~~~n~~r~g~-~nv~v~ 161 (456)
T 3m4x_A 85 GYEYSQEPSAMIVGTAAAAKPGEKVLDL-CAAPGGKSTQLAAQMKG-KGLLVTNEIFPKRAKILSENIERWGV-SNAIVT 161 (456)
T ss_dssp TSCEECCTTTHHHHHHHCCCTTCEEEES-SCTTCHHHHHHHHHHTT-CSEEEEECSSHHHHHHHHHHHHHHTC-SSEEEE
T ss_pred CcEEEECHHHHHHHHHcCCCCCCEEEEE-CCCcCHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEE
Confidence 3445666677788888888888999999 69999999999988753 6899999999999999999998 54 579999
Q ss_pred EcchHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
++|+.+......++||.|++|++-. .+.++++.+.++|+|||.++.+...+.+
T Consensus 162 ~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 162 NHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp CCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred eCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 9999987654568999999997611 1237788999999999988887776654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=111.40 Aligned_cols=116 Identities=13% Similarity=0.058 Sum_probs=92.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
..|.....+...+...++.+|||+ |||+|+.+..++....+ .++|+++|+++++++.|++++. +. .+++++.+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~ 137 (215)
T 2yxe_A 61 SAIHMVGMMCELLDLKPGMKVLEI-GTGCGYHAAVTAEIVGE-DGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDG 137 (215)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCG
T ss_pred CcHHHHHHHHHhhCCCCCCEEEEE-CCCccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 456666666666677778899999 99999999999988732 4899999999999999999987 43 5699999999
Q ss_pred HHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+.++. .++||+|+++....... +.+.+.|+|||.+++...
T Consensus 138 ~~~~~~-~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 138 TLGYEP-LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GGCCGG-GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEES
T ss_pred ccCCCC-CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEEC
Confidence 765442 57899999987665433 477888999988877543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=114.84 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++. +...+++++.+|+.+..+...++||+|++
T Consensus 68 ~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 142 (285)
T 4htf_A 68 QKLRVLDA-GGGEGQTAIKMAER----GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILF 142 (285)
T ss_dssp SCCEEEEE-TCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEE
T ss_pred CCCEEEEe-CCcchHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEE
Confidence 35699999 99999999999875 5799999999999999999997 55578999999999876444689999998
Q ss_pred cCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.... .+...+++.+.+.|+|||.+++.+
T Consensus 143 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 143 HAVLEWVADPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp ESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CchhhcccCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7643 366889999999999999888765
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=126.36 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=103.2
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++.....++..++...++.+|||+ |||+|..|+.||+.++. .|+|+++|+++++++.+++|++ +.. |+++++
T Consensus 83 ~~vQd~ss~l~a~~L~~~~g~~VLDl-gaGpG~kt~~LA~~~~~-~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~ 158 (464)
T 3m6w_A 83 YYIQEPSAQAVGVLLDPKPGERVLDL-AAAPGGKTTHLAARMGG-KGLLLANEVDGKRVRGLLENVERWGAP--LAVTQA 158 (464)
T ss_dssp EEECCTTTHHHHHHHCCCTTCEEEES-SCTTCHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECS
T ss_pred EEEECHHHHHHHHhcCcCCCCEEEEE-cCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEEC
Confidence 34666667777777788888999999 79999999999998753 6899999999999999999998 554 999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|+.+......++||.|++|++-. .+.++++.+.++|+|||.++.+...+.+
T Consensus 159 Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~ 234 (464)
T 3m6w_A 159 PPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP 234 (464)
T ss_dssp CHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence 99987644478999999996521 1267889999999999988887766654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=118.95 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=94.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
....|...+.+...+...++.+|||+ |||+|+.++.+++..+. +++|+++|+++++++.|+++++ ++ .+++++.+
T Consensus 57 ~~~~~~~~~~l~~~l~~~~~~~VLDi-GcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~g~-~~v~~~~~ 133 (317)
T 1dl5_A 57 TSSQPSLMALFMEWVGLDKGMRVLEI-GGGTGYNAAVMSRVVGE-KGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCG 133 (317)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred eccCHHHHHHHHHhcCCCCcCEEEEe-cCCchHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEEC
Confidence 34555666666666677788999999 99999999999987642 5889999999999999999997 44 45999999
Q ss_pred chHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.+.++. .++||+|+++....... +.+.+.|+|||.+++..+
T Consensus 134 d~~~~~~~-~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 134 DGYYGVPE-FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCGG-GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEBC
T ss_pred Chhhcccc-CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEEC
Confidence 99886553 57899999998766443 566778899988887654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=119.48 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=86.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||+ |||+|+.++.+|.... .+|+++|+++++++.|++|++ +..++++++++|+.+.+. .++||+|+
T Consensus 124 ~~~~~VLDl-gcG~G~~~~~la~~~~---~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~Vi 197 (278)
T 2frn_A 124 KPDELVVDM-FAGIGHLSLPIAVYGK---AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRIL 197 (278)
T ss_dssp CTTCEEEET-TCTTTTTHHHHHHHTC---CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred CCCCEEEEe-cccCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--cCCccEEE
Confidence 357899999 8999999999998742 289999999999999999998 666679999999998865 67999999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+|... ...++++.+.+.|+|||.+++.++.
T Consensus 198 ~~~p~-~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 198 MGYVV-RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCch-hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 98764 3467888889999999988887764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=114.45 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC-------------
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL------------- 89 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~------------- 89 (211)
...|...+++..+....++.+|||+ |||+|..+.+||+. +.+|++||+++.+++.|++....
T Consensus 51 ~~~~~l~~~~~~~~~~~~~~~vLD~-GCG~G~~~~~La~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~ 125 (252)
T 2gb4_A 51 QGHQLLKKHLDTFLKGQSGLRVFFP-LCGKAIEMKWFADR----GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGA 125 (252)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEET-TCTTCTHHHHHHHT----TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHhccCCCCCeEEEe-CCCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHhcccccccccccccccc
Confidence 4455556666555444577899999 99999999999974 56999999999999999876531
Q ss_pred -----CCCcEEEEEcchHHHhhhccCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 90 -----DASHVEFVIGDAQSLLLSHFREADFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 90 -----~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|+++++|+.+......++||+|+.-+. .+....+++.+.++|+|||.+++.
T Consensus 126 ~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 126 KVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp EEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 1367999999998864422379999995432 234577999999999999987543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=113.35 Aligned_cols=105 Identities=18% Similarity=0.085 Sum_probs=87.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++.+|||+ |||+|..+..+++.. +.+|+++|+++++++.|++++. ++.++++++.+|+.+. +...++||+
T Consensus 58 ~~~~~~~vLDi-GcG~G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 132 (273)
T 3bus_A 58 DVRSGDRVLDV-GCGIGKPAVRLATAR---DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-PFEDASFDA 132 (273)
T ss_dssp CCCTTCEEEEE-SCTTSHHHHHHHHHS---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCTTCEEE
T ss_pred CCCCCCEEEEe-CCCCCHHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-CCCCCCccE
Confidence 34567899999 999999999999864 5799999999999999999987 6667899999999874 322578999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.... ..+....++.+.+.|+|||.+++.+-
T Consensus 133 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 133 VWALESLHHMPDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp EEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 997653 23578899999999999998888663
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=119.95 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=86.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC----C-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL----D-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~----~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..++++|||| |||+|..+..+++.. +..+|+++|+|+++++.|++++.. + ..+++++++|+.+.++...++|
T Consensus 114 ~~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 190 (321)
T 2pt6_A 114 SKEPKNVLVV-GGGDGGIIRELCKYK--SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 190 (321)
T ss_dssp SSSCCEEEEE-ECTTCHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCCCEEEEE-cCCccHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCc
Confidence 4578899999 999999999988643 368999999999999999999872 2 4689999999999876556799
Q ss_pred cEEEEcCCc------CcH-HHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNL------ENH-EGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~------~~y-~~~l~~~~~~L~pgG~viv~ 144 (211)
|+|++|... ..| .++++.+.+.|+|||.+++.
T Consensus 191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999999732 123 78999999999998877663
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-14 Score=112.06 Aligned_cols=118 Identities=9% Similarity=0.020 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHhh----CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc
Q 041509 25 EPNEAEFISALAAG----NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD 100 (211)
Q Consensus 25 ~~~~~~lL~~l~~~----~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd 100 (211)
.|.+..++..+... .++.+|||+ |||+|..++.++...+ +.+++++|+++++++.|++++.....+++++++|
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~vLDi-G~G~G~~~~~l~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d 87 (215)
T 4dzr_A 11 RPDTEVLVEEAIRFLKRMPSGTRVIDV-GTGSGCIAVSIALACP--GVSVTAVDLSMDALAVARRNAERFGAVVDWAAAD 87 (215)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTEEEEEE-ESSBCHHHHHHHHHCT--TEEEEEEECC-------------------CCHHH
T ss_pred CccHHHHHHHHHHHhhhcCCCCEEEEe-cCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcc
Confidence 34444444444332 567899999 9999999999998863 6799999999999999999988211289999999
Q ss_pred hHHHhhh---ccCCccEEEEcCCcC-----------------------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLS---HFREADFVLIDCNLE-----------------------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~---l~~~fD~VfiD~~~~-----------------------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+.++. ..++||+|+.|.+-. .|..+++.+.++|+|||.+++..
T Consensus 88 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 88 GIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9986552 138999999974310 13677888889999999844444
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=121.88 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=89.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc---cCCccE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH---FREADF 114 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l---~~~fD~ 114 (211)
++++|||+ |||+|..++.+|.. ..++|+++|+++++++.|++|++ ++.++++++++|+.+.++.+ .++||+
T Consensus 217 ~~~~VLDl-~~G~G~~~~~la~~---g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 292 (396)
T 2as0_A 217 PGDRVLDV-FTYTGGFAIHAAIA---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI 292 (396)
T ss_dssp TTCEEEET-TCTTTHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEe-cCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCE
Confidence 67899999 89999999999874 24699999999999999999998 44458999999999987643 468999
Q ss_pred EEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 115 VLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|++|.+. ..|.+.+..+.++|+|||.++++.+..
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 9999865 457888999999999998887776543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=129.52 Aligned_cols=107 Identities=9% Similarity=0.098 Sum_probs=90.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhccCCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l~~~fD 113 (211)
...++++|||+ |||+|..+++++.. ...+|++||+++.+++.|++|++ ++. ++++++++|+.+.++...++||
T Consensus 536 ~~~~g~~VLDl-g~GtG~~sl~aa~~---ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD 611 (703)
T 3v97_A 536 QMSKGKDFLNL-FSYTGSATVHAGLG---GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFD 611 (703)
T ss_dssp HHCTTCEEEEE-SCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEE
T ss_pred HhcCCCcEEEe-eechhHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCcc
Confidence 34577899999 89999999998863 24689999999999999999998 554 5899999999998876678999
Q ss_pred EEEEcCCc--------------CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 114 FVLIDCNL--------------ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 114 ~VfiD~~~--------------~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+|++|.+. ..|.++++.+.++|+|||.++++.|.
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 99999852 25788899999999999988876665
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=112.90 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=83.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH---hhhccCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL---LLSHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~---l~~l~~~fD~V 115 (211)
.+..+|||+ |||+|..+.+++...+ .++|+++|+++++++.|+++.+.. .+++++.+|+.+. ++ +.++||+|
T Consensus 73 ~~~~~VLDl-GcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~-~~~~~D~v 147 (230)
T 1fbn_A 73 KRDSKILYL-GASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYAN-IVEKVDVI 147 (230)
T ss_dssp CTTCEEEEE-SCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTT-TSCCEEEE
T ss_pred CCCCEEEEE-cccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccc-cCccEEEE
Confidence 456789999 9999999999998864 589999999999999999998743 7899999999762 12 23789999
Q ss_pred EEcCCc-CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNL-ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~-~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.|... ..+..+++.+.+.|+|||.+++.
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 988543 34577899999999999988875
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=117.51 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=89.9
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+....++.+|||+ |||+|..+..++...+. +.+|+++|+++.+++.|++++.....+++++++|+.+. + ..++||+
T Consensus 17 ~~~~~~~~~vLDi-GcG~G~~~~~l~~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~ 92 (284)
T 3gu3_A 17 VWKITKPVHIVDY-GCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-E-LNDKYDI 92 (284)
T ss_dssp TSCCCSCCEEEEE-TCTTTHHHHHHTTTSCT-TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-C-CSSCEEE
T ss_pred HhccCCCCeEEEe-cCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-C-cCCCeeE
Confidence 3355678999999 99999999999987753 58999999999999999999873334899999999874 3 2579999
Q ss_pred EEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|++.... .+....++.+.+.|+|||.+++.+.
T Consensus 93 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 93 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 9997643 3568899999999999998887764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=121.84 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=89.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---cCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---FREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~~~fD~V 115 (211)
+.++|||+ |||+|..++.+|.. ..+|+++|+++++++.|++|++ ...++++++++|+.+.++.+ .++||+|
T Consensus 209 ~~~~VLDl-g~G~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDV-FSYAGGFALHLALG----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEE-TCTTTHHHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEe-eeccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence 66789999 89999999999976 4799999999999999999998 32344999999999987654 5689999
Q ss_pred EEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 116 LIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 116 fiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
++|.+. ..|.+.++.+.++|+|||.++++.+...
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999865 4578889999999999998888776543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=117.69 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=86.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC----C-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL----D-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~----~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..++++|||+ |||+|..+..+++.. +..+|++||+|+++++.|++++.. + ..+++++++|+.+.++...++|
T Consensus 76 ~~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 76 SKEPKNVLVV-GGGDGGIIRELCKYK--SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 152 (283)
T ss_dssp SSSCCEEEEE-ECTTSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCCCeEEEE-eCCcCHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence 3578899999 999999999888643 258999999999999999999872 2 4789999999999877556799
Q ss_pred cEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv~ 144 (211)
|+|++|.... .| .++++.+.+.|+|||.+++.
T Consensus 153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9999987421 22 68999999999998877663
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=111.48 Aligned_cols=117 Identities=16% Similarity=0.117 Sum_probs=89.4
Q ss_pred CChhHHH-HHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC----CCcEE
Q 041509 24 KEPNEAE-FISALA-AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD----ASHVE 95 (211)
Q Consensus 24 ~~~~~~~-lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~----~~~V~ 95 (211)
..|.... ++..+. ...++.+|||+ |||+|+.+..+++...+ .++|+++|+++++++.|++++. +. .++++
T Consensus 59 ~~p~~~~~~l~~l~~~~~~~~~vLDi-G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~ 136 (226)
T 1i1n_A 59 SAPHMHAYALELLFDQLHEGAKALDV-GSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ 136 (226)
T ss_dssp CCHHHHHHHHHHTTTTSCTTCEEEEE-TCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEE-cCCcCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence 3444433 344333 25567899999 99999999999987642 5799999999999999999987 33 46899
Q ss_pred EEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 96 FVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 96 ~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++.+|+.+.... .++||+|+++..... .++.+.+.|+|||.+++...
T Consensus 137 ~~~~d~~~~~~~-~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 137 LVVGDGRMGYAE-EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEESCGGGCCGG-GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEES
T ss_pred EEECCcccCccc-CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEe
Confidence 999999865432 578999999987653 34677888999998887553
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=121.01 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=86.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++++|||+ |||+|..|+.+|.. +.+|+++|+++.+++.|++|++ +... ++.++|+.+.++.+.+.||+|++
T Consensus 214 ~g~~VLDl-g~GtG~~sl~~a~~----ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 214 PGERVLDV-YSYVGGFALRAARK----GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TTCEEEEE-SCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCCeEEEc-ccchhHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEE
Confidence 37899999 89999999999874 4559999999999999999998 5543 46699999998765556999999
Q ss_pred cCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|.+. ..|.++++.+.++|+|||.++++.+...
T Consensus 287 dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 287 DPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9864 3578899999999999998887776544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=111.22 Aligned_cols=114 Identities=13% Similarity=0.025 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC-------------C
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL-------------D 90 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~-------------~ 90 (211)
+.|...+++..+ ...++.+|||+ |||+|..+.+|++. +.+|++||++++|++.|+++... .
T Consensus 7 ~~~~l~~~~~~l-~~~~~~~vLD~-GCG~G~~~~~la~~----g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 80 (203)
T 1pjz_A 7 VNKDLQQYWSSL-NVVPGARVLVP-LCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 80 (203)
T ss_dssp STHHHHHHHHHH-CCCTTCEEEET-TTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE
T ss_pred CCHHHHHHHHhc-ccCCCCEEEEe-CCCCcHhHHHHHHC----CCeEEEEeCCHHHHHHHHHHccCCccccccccccccc
Confidence 344445555443 33467899999 99999999999975 56999999999999999988651 1
Q ss_pred CCcEEEEEcchHHHhhhccCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEE
Q 041509 91 ASHVEFVIGDAQSLLLSHFREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv 143 (211)
..+|+++++|+.+......++||+|+.-... .+...+++++.+.|+|||.+++
T Consensus 81 ~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 81 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3579999999987643212689999964322 2345689999999999887333
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=111.11 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=87.9
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
.+++..+....++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++... .+++++++|+.+.. .
T Consensus 40 ~~~l~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~--~ 111 (216)
T 3ofk_A 40 TQLLRLSLSSGAVSNGLEI-GCAAGAFTEKLAPH----CKRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQFS--T 111 (216)
T ss_dssp HHHHHHHTTTSSEEEEEEE-CCTTSHHHHHHGGG----EEEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTCC--C
T ss_pred HHHHHHHcccCCCCcEEEE-cCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHhcccC-CCeEEEEcchhhCC--C
Confidence 3455555556667899999 99999999998865 469999999999999999998742 38999999998875 3
Q ss_pred cCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||+|+..... ......++.+.+.|+|||.+++.+
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 112 AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 6899999987432 233577999999999988887754
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=112.47 Aligned_cols=111 Identities=10% Similarity=-0.049 Sum_probs=90.0
Q ss_pred HHHHHhhC-CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 32 ISALAAGN-NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 32 L~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
|..++... ++.+|+|| |||+|+.++.++... +.++|+++|++|.+++.|++|++ ++.++|+++.||..+.+..
T Consensus 12 L~~i~~~v~~g~~VlDI-GtGsG~l~i~la~~~--~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~- 87 (230)
T 3lec_A 12 LQKVANYVPKGARLLDV-GSDHAYLPIFLLQMG--YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE- 87 (230)
T ss_dssp HHHHHTTSCTTEEEEEE-TCSTTHHHHHHHHTT--CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-
T ss_pred HHHHHHhCCCCCEEEEE-CCchHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-
Confidence 44555544 45689999 999999999998763 25799999999999999999998 7778999999999988653
Q ss_pred cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||.|++.+--. ...+.++...+.|+++|.+++.-|
T Consensus 88 ~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 88 ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence 34899999866443 457788888888999888887665
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=111.98 Aligned_cols=106 Identities=8% Similarity=0.030 Sum_probs=87.6
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++.+|||+ |||+|..+..++...+ +.+++++|+++++++.|++++.... +++++.+|+.+... .++||+|++
T Consensus 42 ~~~~~~vLDi-G~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~--~~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDL-GAGTGLLSAFLMEKYP--EATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDF--EEKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCC--CSCEEEEEE
T ss_pred CCCCCeEEEe-cCCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCC--CCCceEEEE
Confidence 4567899999 9999999999998863 6899999999999999999988333 89999999987643 389999999
Q ss_pred cCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
..... .....++.+.+.|+|||.+++.+....
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 86433 223589999999999999988775443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=111.85 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
..|.....+..++...++.+|||+ |||+|+.+..+++..+ ++|+++|+++++++.|+++++ ....+++++.+|+.
T Consensus 75 ~~~~~~~~~~~~l~~~~~~~vLdi-G~G~G~~~~~la~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~ 150 (235)
T 1jg1_A 75 SAPHMVAIMLEIANLKPGMNILEV-GTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS 150 (235)
T ss_dssp CCHHHHHHHHHHHTCCTTCCEEEE-CCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred ccHHHHHHHHHhcCCCCCCEEEEE-eCCcCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc
Confidence 345566666666677778899999 9999999999998763 789999999999999999997 22345999999984
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..++. ..+||+|+++....... +.+.+.|+|||.+++..+
T Consensus 151 ~~~~~-~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 151 KGFPP-KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp GCCGG-GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred cCCCC-CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEEe
Confidence 44332 45699999998765433 467788999888877553
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=110.85 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=87.9
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
..++..+....++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++.. +++++++|+.+.. .
T Consensus 31 ~~~~~~l~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~~--~ 100 (250)
T 2p7i_A 31 PFMVRAFTPFFRPGNLLEL-GSFKGDFTSRLQEH----FNDITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQ--L 100 (250)
T ss_dssp HHHHHHHGGGCCSSCEEEE-SCTTSHHHHHHTTT----CSCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCC--C
T ss_pred HHHHHHHHhhcCCCcEEEE-CCCCCHHHHHHHHh----CCcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHcC--c
Confidence 3445555555678899999 99999999988864 35899999999999999998763 7999999998873 2
Q ss_pred cCCccEEEEcCCc---CcHHHHHHHHH-hcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNL---ENHEGVLRAVQ-AGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~---~~y~~~l~~~~-~~L~pgG~viv~d 145 (211)
+++||+|++..-. .+....++++. +.|+|||.+++.+
T Consensus 101 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 6799999987643 35688999999 9999999888765
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=113.91 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=88.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++.+|||+ |||+|..+..++... +.+|+++|+++.+++.|++++. +..++++++.+|+.+. +...++||+
T Consensus 79 ~~~~~~~vLDi-GcG~G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 153 (297)
T 2o57_A 79 VLQRQAKGLDL-GAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDF 153 (297)
T ss_dssp CCCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEE
T ss_pred CCCCCCEEEEe-CCCCCHHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeE
Confidence 44677899999 999999999999875 4699999999999999999987 6678899999999874 322578999
Q ss_pred EEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+..... .+....++.+.+.|+|||.+++.+.
T Consensus 154 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 154 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9987543 3568899999999999998888764
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-13 Score=109.72 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
...+...+.+...+...++.+|||+ |||+|+.+..++... ++|+++|+++++++.|++++.... +++++.+|+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~ 126 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEI-GTGIGYYTALIAEIV----DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGT 126 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHS----SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGG
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEE-cCCCCHHHHHHHHHc----CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcc
Confidence 4566666666666677778899999 999999999999863 799999999999999999988333 8999999998
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.++ ..++||+|+++....... +.+.+.|+|||.+++..+
T Consensus 127 ~~~~-~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 127 LGYE-EEKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp GCCG-GGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred cccc-cCCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEEc
Confidence 7544 257999999987665332 467788999988877654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=110.29 Aligned_cols=107 Identities=7% Similarity=-0.038 Sum_probs=87.5
Q ss_pred HHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh
Q 041509 31 FISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 31 lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~ 107 (211)
++..+.. ..++.+|||+ |||+|..++.++.. ...+|+++|+++++++.|++++. +.. +++++.+|+.+..
T Consensus 50 ~~~~l~~~~~~~~~vLDi-G~G~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-- 122 (205)
T 3grz_A 50 AMLGIERAMVKPLTVADV-GTGSGILAIAAHKL---GAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV-- 122 (205)
T ss_dssp HHHHHHHHCSSCCEEEEE-TCTTSHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC--
T ss_pred HHHHHHHhccCCCEEEEE-CCCCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC--
Confidence 4444433 3467899999 99999999998863 25699999999999999999998 433 4999999997753
Q ss_pred ccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 HFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||+|+.+.....+...++.+.+.|+|||.+++.+
T Consensus 123 -~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 123 -DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp -CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred -CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 5799999999887777888999999999988887754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-14 Score=120.44 Aligned_cols=104 Identities=18% Similarity=0.092 Sum_probs=85.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..++.++.+.. ++.+|+++|+++.+++.|++++. +..++++++++|+.+... .++||+|
T Consensus 116 l~~~~~vLDi-GcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v 191 (305)
T 3ocj_A 116 LRPGCVVASV-PCGWMSELLALDYSAC-PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--REGYDLL 191 (305)
T ss_dssp CCTTCEEEET-TCTTCHHHHTSCCTTC-TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--CSCEEEE
T ss_pred CCCCCEEEEe-cCCCCHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--cCCeEEE
Confidence 4567899999 9999999998864332 37899999999999999999998 556779999999988532 4899999
Q ss_pred EEcCC------cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCN------LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~------~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++... ...+.++++.+.+.|+|||.+++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 98652 2233458999999999988888755
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=112.43 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~ 110 (211)
|...+...++.+|||+ |||+|..+..++.. .++|+++|+++++++.|++++. ....+++++.+|+.+. +..++
T Consensus 29 l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~ 102 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDV-ATGGGHVANAFAPF----VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDE 102 (260)
T ss_dssp HHHHHTCCSCCEEEEE-TCTTCHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTT
T ss_pred HHHHhCCCCCCEEEEE-eCCCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-CCCCC
Confidence 3334456678899999 99999999988865 3599999999999999999987 2235799999999774 32257
Q ss_pred CccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 111 EADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 111 ~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+||+|+..... .+....++++.+.|+|||.+++.+.
T Consensus 103 ~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999987543 3668899999999999998888764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=114.61 Aligned_cols=119 Identities=18% Similarity=0.076 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.+..++.+..++...+...|||+ |||+|..++.++....+ +.+|+++|+|+++++.|++|++ ++. +|+++++|
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~-gcGsG~~~ie~a~~~~~-~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D 262 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDP-FTGSGTIALEAASTLGP-TSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRAD 262 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEES-SCTTSHHHHHHHHHHCT-TSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECC
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeC-CCCcCHHHHHHHHhhCC-CceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCC
Confidence 4556667777777776778899999 89999999999987622 5899999999999999999998 555 89999999
Q ss_pred hHHHhhhccCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+.... .+.||+|+.|.+-. .|..+++.+.+.|+|||.+++..
T Consensus 263 ~~~~~~~-~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 263 ARHLPRF-FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGGGGT-CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhhCccc-cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9987543 56799999986532 25788999999999999988754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=113.29 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhC----CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEEcchH
Q 041509 28 EAEFISALAAGN----NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVIGDAQ 102 (211)
Q Consensus 28 ~~~lL~~l~~~~----~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~gda~ 102 (211)
...++..++... ++.+|||+ |||+|..+..++... ..+|+++|+++++++.|++++... ..+++++.+|+.
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~ 138 (241)
T 2ex4_A 63 SRKFLQRFLREGPNKTGTSCALDC-GAGIGRITKRLLLPL---FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138 (241)
T ss_dssp HHHHHHGGGC----CCCCSEEEEE-TCTTTHHHHHTTTTT---CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGG
T ss_pred HHHHHHHHHHhcccCCCCCEEEEE-CCCCCHHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChh
Confidence 345666555433 47899999 999999999887653 469999999999999999998722 457999999987
Q ss_pred HHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 103 SLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+... ..++||+|+++.... .+..+++.+.+.|+|||.+++.++...
T Consensus 139 ~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 139 DFTP-EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp GCCC-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred hcCC-CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 7533 256899999986432 256889999999999999988876543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=116.51 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=87.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..+++.. +.+|+++|+++++++.|+++++ ++.++++++.+|+.+. +...++||+|
T Consensus 115 ~~~~~~vLDi-GcG~G~~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDA-GCGRGGSMVMAHRRF---GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEE-SCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEE
T ss_pred CCCCCEEEEe-cCCCCHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCCCCEeEE
Confidence 4567899999 999999999999874 5799999999999999999998 6667899999999864 3225799999
Q ss_pred EEcCCcC--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+...... +...+++.+.+.|+|||.+++.+.
T Consensus 190 ~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 190 WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp EEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9864322 478999999999999999888764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=111.06 Aligned_cols=101 Identities=7% Similarity=-0.008 Sum_probs=85.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..+++.. +.+|+++|+++++++.|++++. +...+++++.+|+.+. .++||+|
T Consensus 62 ~~~~~~vLDi-GcG~G~~~~~l~~~~---~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDV-GCGWGATMMRAVEKY---DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----DEPVDRI 133 (287)
T ss_dssp CCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----CCCCSEE
T ss_pred CCCcCEEEEE-CCcccHHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----CCCeeEE
Confidence 3466799999 999999999999765 4599999999999999999987 5567899999999654 2789999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.... ..++..+++.+.++|+|||.+++.+.
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98742 24678999999999999998888653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-13 Score=105.78 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=87.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+..++...++.+|||+ |||+|..+.+++.. +.+++++|+++.+++.|++++. +. .+++++.+|+.+. +. .
T Consensus 24 l~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~-~~-~ 95 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDL-GCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNL-TF-D 95 (199)
T ss_dssp HHHHTTTSCSCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGC-CC-C
T ss_pred HHHHhhccCCCeEEEE-cCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhC-CC-C
Confidence 3344455678899999 99999999999874 5699999999999999999987 43 4699999999875 32 6
Q ss_pred CCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 110 READFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++||+|+.... .++...+++.+.+.|+|||.+++.+.
T Consensus 96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 79999998753 23678899999999999998777653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=112.57 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 25 EPNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 25 ~~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.|.+..++..+... .++.+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ +. .+++++++|
T Consensus 92 r~~te~l~~~~l~~~~~~~~~vLDl-G~GsG~~~~~la~~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~-~~v~~~~~d 167 (276)
T 2b3t_A 92 RPDTECLVEQALARLPEQPCRILDL-GTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSD 167 (276)
T ss_dssp CTTHHHHHHHHHHHSCSSCCEEEEE-TCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCS
T ss_pred CchHHHHHHHHHHhcccCCCEEEEe-cCCccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEcc
Confidence 45555565555544 457799999 8999999999998763 6899999999999999999997 43 479999999
Q ss_pred hHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+.++ .++||+|+.+.+- ..|..+++.+.+.|+|||.+++..
T Consensus 168 ~~~~~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 168 WFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp TTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhcc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 988654 5789999998421 245778899999999988777643
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=107.45 Aligned_cols=101 Identities=7% Similarity=0.016 Sum_probs=85.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
++.+|||+ |||+|..++.++...+ +.+++++|+++++++.|+++++ ....+++++++|+.+..+ .++||+|+..
T Consensus 65 ~~~~vLDi-G~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDV-GTGPGLPGIPLSIVRP--EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS--EPPFDGVISR 139 (207)
T ss_dssp CSSEEEEE-TCTTTTTHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC--CSCEEEEECS
T ss_pred CCCeEEEE-CCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc--cCCcCEEEEe
Confidence 46899999 9999999999998763 6899999999999999999998 223449999999987643 4789999976
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+ ...+...++.+.+.|+|||.+++...
T Consensus 140 ~-~~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 140 A-FASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp C-SSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred c-cCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5 45788999999999999888887654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=109.71 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=89.8
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCC
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
......++.+|||+ |||+|..+..++....+ .++|+++|+++++++.|++++. +. .+++++.+|+.+.. ...++
T Consensus 31 ~~~~~~~~~~vLDi-G~G~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~ 106 (219)
T 3dh0_A 31 KEFGLKEGMTVLDV-GTGAGFYLPYLSKMVGE-KGKVYAIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIP-LPDNT 106 (219)
T ss_dssp HHHTCCTTCEEEES-SCTTCTTHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECBTTBCS-SCSSC
T ss_pred HHhCCCCCCEEEEE-ecCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEecccccCC-CCCCC
Confidence 33456677899999 99999999999988643 6799999999999999999987 43 47999999997652 22578
Q ss_pred ccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 112 ADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 112 fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
||+|++.... .+....++.+.+.|+|||.+++.+.
T Consensus 107 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 9999987643 3568899999999999998888764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=122.23 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=101.2
Q ss_pred CcCCChhHHHHHHHHHhhC--CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEE
Q 041509 21 QKAKEPNEAEFISALAAGN--NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEF 96 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~--~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~ 96 (211)
...++.....++..++... ++.+|||+ |||+|..|+.||+.++. .++|+++|+++++++.+++|++ +. .+|++
T Consensus 96 ~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl-~aGpG~kt~~lA~~~~~-~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~ 172 (479)
T 2frx_A 96 LFYIQEASSMLPVAALFADGNAPQRVMDV-AAAPGSKTTQISARMNN-EGAILANEFSASRVKVLHANISRCGI-SNVAL 172 (479)
T ss_dssp SEEECCHHHHHHHHHHTTTTCCCSEEEES-SCTTSHHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHHHHHTC-CSEEE
T ss_pred EEEEECHHHHHHHHHhCcccCCCCEEEEe-CCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEE
Confidence 3345566666666666666 78899999 79999999999998753 6899999999999999999998 54 57999
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+++|+.+......+.||.|++|++-. .+.++++.+.++|+|||.++.+...+.+
T Consensus 173 ~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~ 251 (479)
T 2frx_A 173 THFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ 251 (479)
T ss_dssp ECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred EeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence 99999887543467899999996421 0246788889999999998887766654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=110.36 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~ 106 (211)
....+..+....++.+|||+ |||+|..+..++.. ..+|+++|+++++++.|++++. ....+++++.+|+.+. +
T Consensus 9 ~~~~~~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~ 82 (239)
T 1xxl_A 9 SLGLMIKTAECRAEHRVLDI-GAGAGHTALAFSPY----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-P 82 (239)
T ss_dssp HHHHHHHHHTCCTTCEEEEE-SCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-C
T ss_pred CcchHHHHhCcCCCCEEEEE-ccCcCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-C
Confidence 34445555577788999999 99999999988865 3599999999999999999987 2235799999999764 4
Q ss_pred hccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 107 SHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
...++||+|+..... .+....++.+.+.|+|||.+++.+...
T Consensus 83 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 83 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 225789999987543 367889999999999999888877544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=113.16 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=90.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l 108 (211)
+++.......++.+|||+ |||+|..+..++...+ +++|+++|+++.+++.|++++. ....+++++.+|+.+... .
T Consensus 27 ~~l~~~~~~~~~~~vLDi-G~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~ 102 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEA-GCGIGAQTVILAKNNP--DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF-E 102 (276)
T ss_dssp HHHHTTCCCCTTCEEEET-TCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS-C
T ss_pred HHHhhcccCCCCCeEEEe-cCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC-C
Confidence 333333334577899999 9999999999998753 6899999999999999999987 333579999999987532 2
Q ss_pred cCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||+|++.... .+....++.+.+.|+|||.+++.+
T Consensus 103 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 6799999987533 356789999999999999888876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=112.82 Aligned_cols=101 Identities=8% Similarity=-0.011 Sum_probs=85.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..+++.. +.+|+++|+++++++.|++++. ++.++++++.+|+.+. .++||+|
T Consensus 88 ~~~~~~vLDi-GcG~G~~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDI-GCGWGTTMRRAVERF---DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPVDRI 159 (318)
T ss_dssp CCTTCEEEEE-SCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCCSEE
T ss_pred CCCcCEEEEE-cccchHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----CCCcCEE
Confidence 3467799999 999999999999875 4699999999999999999987 5567899999998764 3789999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.... .+++..+++.+.+.|+|||.+++.+.
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98742 24678999999999999998888663
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=119.69 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=91.7
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC--CcEEEEEcchHHHh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA--SHVEFVIGDAQSLL 105 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~--~~V~~~~gda~e~l 105 (211)
+++.......++.+|||+ |||+|..++.++...+ +.+|++||+++.+++.|++|++ +.. .+++|+.+|+.+.+
T Consensus 212 ~~ll~~l~~~~~~~VLDl-GcG~G~~s~~la~~~p--~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~ 288 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDL-GCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 288 (375)
T ss_dssp HHHHHTCCCSCCSEEEEE-TCTTCHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC
T ss_pred HHHHHhCcccCCCeEEEE-eCcchHHHHHHHHHCC--CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC
Confidence 344444444556899999 9999999999998863 6899999999999999999998 433 36999999998854
Q ss_pred hhccCCccEEEEcCCc--------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 106 LSHFREADFVLIDCNL--------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~--------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+ .++||+|+++... ....++++.+.+.|+|||.++++.|...
T Consensus 289 ~--~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 289 E--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp C--TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred C--CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 3 5799999998652 2235789999999999999988777544
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=110.22 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=79.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH---hhhccCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL---LLSHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~---l~~l~~~fD~V 115 (211)
.++.+|||+ |||+|+.+..++...+ +++|+++|+++++++.+.+..+. ..+++++.+|+.+. .+ +.++||+|
T Consensus 56 ~~g~~VLDl-GcGtG~~~~~la~~~~--~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~~~-~~~~fD~V 130 (210)
T 1nt2_A 56 RGDERVLYL-GAASGTTVSHLADIVD--EGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSG-IVEKVDLI 130 (210)
T ss_dssp CSSCEEEEE-TCTTSHHHHHHHHHTT--TSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTT-TCCCEEEE
T ss_pred CCCCEEEEE-CCcCCHHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhhcc-cccceeEE
Confidence 466799999 9999999999998874 58999999999987666655442 24799999998764 22 24789999
Q ss_pred EEcCCcCc-HHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLEN-HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~-y~~~l~~~~~~L~pgG~viv~ 144 (211)
+++..... ....++.+.+.|+|||.+++.
T Consensus 131 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 131 YQDIAQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99965443 334589999999999988875
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-13 Score=112.02 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=93.0
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC---CCCcEEEEEcc
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL---DASHVEFVIGD 100 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~---~~~~V~~~~gd 100 (211)
..+...++|..+.. .++.+|||+ |||+|..+..++..++ .+.+|+++|+++.+++.|+++++. ...+++++++|
T Consensus 21 y~~~~~~~l~~~~~-~~~~~vLDi-GcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 97 (299)
T 3g5t_A 21 YPSDFYKMIDEYHD-GERKLLVDV-GCGPGTATLQMAQELK-PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97 (299)
T ss_dssp CCHHHHHHHHHHCC-SCCSEEEEE-TCTTTHHHHHHHHHSS-CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECC
T ss_pred CCHHHHHHHHHHhc-CCCCEEEEE-CCCCCHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcC
Confidence 34555556655533 467899999 9999999999998763 378999999999999999999872 36789999999
Q ss_pred hHHHhhhcc------CCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 101 AQSLLLSHF------READFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 101 a~e~l~~l~------~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
+.+... .. ++||+|+...... +....++.+.+.|+|||.+++
T Consensus 98 ~~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 98 SDDFKF-LGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TTCCGG-GCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhCCc-cccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 987532 24 7999999875322 678899999999999988877
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=111.11 Aligned_cols=104 Identities=10% Similarity=0.034 Sum_probs=79.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh--hccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL--SHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~--~l~~~fD~V 115 (211)
..++.+|||+ |||+|+.|..+|..+.+ .|+|+++|+++.+++...+..+. ..+|+++.+|+..... .+.++||+|
T Consensus 74 l~~g~~VLDl-G~GtG~~t~~la~~v~~-~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~~~~~~~D~I 150 (232)
T 3id6_C 74 IRKGTKVLYL-GAASGTTISHVSDIIEL-NGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYKSVVENVDVL 150 (232)
T ss_dssp CCTTCEEEEE-TCTTSHHHHHHHHHHTT-TSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCEEEEE-eecCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhhccccceEEE
Confidence 5678899999 89999999999998754 79999999999886544333331 2579999999975422 235789999
Q ss_pred EEcCCcCcHHHHHH-HHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLR-AVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~-~~~~~L~pgG~viv~ 144 (211)
|+|....+..+.+. .+.+.|+|||.+++.
T Consensus 151 ~~d~a~~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 151 YVDIAQPDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence 99988776665554 445589999988875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=111.42 Aligned_cols=111 Identities=8% Similarity=-0.036 Sum_probs=88.9
Q ss_pred HHHHHhhC-CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 32 ISALAAGN-NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 32 L~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
|..++... ++.+|||| |||+|+.++.++... +.++|+++|++|.+++.|++|++ ++.++|+++.||..+.+..
T Consensus 12 L~~i~~~v~~g~~VlDI-GtGsG~l~i~la~~~--~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~- 87 (244)
T 3gnl_A 12 LEKVASYITKNERIADI-GSDHAYLPCFAVKNQ--TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK- 87 (244)
T ss_dssp HHHHHTTCCSSEEEEEE-TCSTTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-
T ss_pred HHHHHHhCCCCCEEEEE-CCccHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-
Confidence 44444444 45689999 999999999999763 25799999999999999999998 6778899999999987653
Q ss_pred cCCccEEEEcCCc-CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNL-ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~-~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||.|++.+.- ....+.++...+.|++++.+++.-+
T Consensus 88 ~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 88 KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 3469999985433 3467788888888998888887665
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=110.89 Aligned_cols=109 Identities=9% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhcc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~ 109 (211)
.++..+ ...++.+|||+ |||+|..+.+++.. +.+|+++|+++.+++.|++++....-+++++.+|+.+... .
T Consensus 111 ~~~~~~-~~~~~~~vLD~-GcG~G~~~~~l~~~----g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~ 182 (286)
T 3m70_A 111 DVVDAA-KIISPCKVLDL-GCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI--Q 182 (286)
T ss_dssp HHHHHH-HHSCSCEEEEE-SCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC--C
T ss_pred HHHHHh-hccCCCcEEEE-CCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc--c
Confidence 344433 34478899999 99999999999875 5699999999999999999988211289999999987543 6
Q ss_pred CCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 110 READFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++||+|+.... .+....+++.+.+.|+|||.+++...
T Consensus 183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 89999998763 34567899999999999998666554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=118.81 Aligned_cols=119 Identities=11% Similarity=0.004 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHH-------HHHhc--CC-CCcEE
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS-------KKILG--LD-ASHVE 95 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~A-------r~~~~--~~-~~~V~ 95 (211)
|.....+...+...++.+|||+ |||+|+.++.+|...+ ..+|++||+++++++.| +++++ ++ ..+|+
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDL-GCGsG~la~~LA~~~g--~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~ 304 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDL-GSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEE-SCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEe-CCCcCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence 4443333344456678899999 9999999999998763 46899999999999999 88887 43 37899
Q ss_pred EEEcchHHH---hhhccCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 96 FVIGDAQSL---LLSHFREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 96 ~~~gda~e~---l~~l~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+++||.... ++...++||+|++... ..+....++.+.+.|+|||.+++.+..
T Consensus 305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 305 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 999876421 2222468999998632 245677889999999999988775543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=111.46 Aligned_cols=118 Identities=10% Similarity=0.056 Sum_probs=93.1
Q ss_pred CCChhHHHHHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc
Q 041509 23 AKEPNEAEFISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG 99 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g 99 (211)
...+...+.+..++. ..++.+|||+ |||+|..+..++... +.+|+++|+++++++.|++++... .+++++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~ 109 (266)
T 3ujc_A 35 YISSGGLEATKKILSDIELNENSKVLDI-GSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVSGN-NKIIFEAN 109 (266)
T ss_dssp CCSTTHHHHHHHHTTTCCCCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEEC
T ss_pred ccccchHHHHHHHHHhcCCCCCCEEEEE-CCCCCHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEC
Confidence 344444444444433 4467799999 999999999999875 579999999999999999988743 78999999
Q ss_pred chHHHhhhccCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 100 DAQSLLLSHFREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.+. +...++||+|+..... .+...+++.+.+.|+|||.+++.+.
T Consensus 110 d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 110 DILTK-EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CTTTC-CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccC-CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99875 3226799999987532 4568899999999999998888764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-13 Score=111.43 Aligned_cols=105 Identities=8% Similarity=-0.061 Sum_probs=82.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------CCCCcEEEEEcchHHHhhh-c-c
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------LDASHVEFVIGDAQSLLLS-H-F 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~~~~~V~~~~gda~e~l~~-l-~ 109 (211)
.+..+|||| |||+|..++.||...+ +..|++||+++.+++.|+++++ ....+|+++.+|+.+.++. + .
T Consensus 45 ~~~~~vLDi-GcG~G~~~~~la~~~p--~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~ 121 (235)
T 3ckk_A 45 QAQVEFADI-GCGYGGLLVELSPLFP--DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK 121 (235)
T ss_dssp -CCEEEEEE-TCTTCHHHHHHGGGST--TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT
T ss_pred CCCCeEEEE-ccCCcHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC
Confidence 455689999 9999999999998753 6899999999999999998764 2246899999999885552 2 5
Q ss_pred CCccEEEEcCCcCc-----------HHHHHHHHHhcCCCCcEEEEEec
Q 041509 110 READFVLIDCNLEN-----------HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD~~~~~-----------y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++||.|++...... +..+++.+.+.|+|||.+++..+
T Consensus 122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 78999998643221 25799999999999998877543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=109.54 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 24 KEPNEAEFISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 24 ~~~~~~~lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
..|++..++..+.. ..++.+|||+ |||+|..++.++.. + +.+|+++|+++++++.|++|++ ++.++++|++
T Consensus 104 pr~~te~lv~~~l~~~~~~~~~~vLDl-G~GsG~~~~~la~~-~--~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~ 179 (284)
T 1nv8_A 104 PRPETEELVELALELIRKYGIKTVADI-GTGSGAIGVSVAKF-S--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 179 (284)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEE-SCTTSHHHHHHHHH-S--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred cChhHHHHHHHHHHHhcccCCCEEEEE-eCchhHHHHHHHHC-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 34555555444433 2356799999 89999999999987 3 6899999999999999999998 5566799999
Q ss_pred cchHHHhhhccCCc---cEEEEcCCcCc----------H------------HHHHHHHH-hcCCCCcEEEEE
Q 041509 99 GDAQSLLLSHFREA---DFVLIDCNLEN----------H------------EGVLRAVQ-AGNKPNGAVVVG 144 (211)
Q Consensus 99 gda~e~l~~l~~~f---D~VfiD~~~~~----------y------------~~~l~~~~-~~L~pgG~viv~ 144 (211)
+|+.+.++ ++| |+|+.+.+-.. | ...++.+. +.|+|||.+++.
T Consensus 180 ~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 180 GEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp SSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred Ccchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99988654 468 99999843110 1 26788999 999998887763
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-13 Score=109.99 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=83.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--------CCCcEEEEEcchHHHhhhc--
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--------DASHVEFVIGDAQSLLLSH-- 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--------~~~~V~~~~gda~e~l~~l-- 108 (211)
+..+|||| |||+|..++.++...+ +.+|++||+++.+++.|+++++ . ...+++++.+|+.+.++..
T Consensus 49 ~~~~vLDi-GcG~G~~~~~la~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 49 KKVTIADI-GCGFGGLMIDLSPAFP--EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp CCEEEEEE-TCTTSHHHHHHHHHST--TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCEEEEE-cCCCCHHHHHHHHhCC--CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 56789999 9999999999998863 5799999999999999999876 2 2368999999998866532
Q ss_pred cCCccEEEEcCCcCc-----------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNLEN-----------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~-----------y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.+|.|++...... +..+++.+.++|+|||.+++..
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 568999987643322 2589999999999998887754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=110.43 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=84.0
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++..+....++.+|||+ |||+|..++.++.. +++|+++|+++.+++.|+++++ +..++++++++|+.+..+
T Consensus 69 l~~~~~~~~~~~~vLD~-gcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 141 (241)
T 3gdh_A 69 IAGRVSQSFKCDVVVDA-FCGVGGNTIQFALT----GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-- 141 (241)
T ss_dssp HHHHHHHHSCCSEEEET-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--
T ss_pred HHHHhhhccCCCEEEEC-ccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--
Confidence 34444445578899999 99999999999974 5899999999999999999998 545789999999998763
Q ss_pred cCCccEEEEcCCcCc---HHHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLEN---HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~---y~~~l~~~~~~L~pgG~viv 143 (211)
.++||+|+++..... ....+..+.+.|+|||.+++
T Consensus 142 ~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 142 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHH
Confidence 579999999975432 22245566778999887544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-13 Score=108.30 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=82.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
..+..+|||+ |||+|..+.+++....+ +++|+++|+++++++.+.++.+.. .+++++.+|+.+. ++...++||+|
T Consensus 75 ~~~~~~vLDl-G~G~G~~~~~la~~~g~-~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 75 IKPGAKVLYL-GAASGTTVSHVSDIVGP-DGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CCTTCEEEEE-CCTTSHHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred CCCCCEEEEE-cccCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEE
Confidence 3456799999 99999999999988632 589999999999887777776622 6799999999874 33336799999
Q ss_pred EEcCCcCc-HHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLEN-HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~-y~~~l~~~~~~L~pgG~viv~d 145 (211)
++|....+ ...+++.+.+.|+|||.+++.-
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 152 FADVAQPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCCccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 99976443 3456888999999988887743
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=114.41 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=84.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CCCCcEEEEEcchHHHhhh-ccCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LDASHVEFVIGDAQSLLLS-HFREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~~~~V~~~~gda~e~l~~-l~~~f 112 (211)
.++++|||| |||+|..+..+++.. +..+|++||+|+++++.|++++. ....+++++.+|+.+.+.. ..++|
T Consensus 94 ~~~~~VLdi-G~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 94 PKPERVLII-GGGDGGVLREVLRHG--TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp SSCCEEEEE-ECTTSHHHHHHHTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCCCeEEEE-cCCCCHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCce
Confidence 578899999 999999999998653 25799999999999999999983 2256899999999998754 26799
Q ss_pred cEEEEcCCcCc------H-HHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLEN------H-EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~------y-~~~l~~~~~~L~pgG~viv~d 145 (211)
|+|++|..... | .++++.+.+.|+|||.+++..
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99999974321 1 688999999999988877643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-13 Score=110.19 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=88.0
Q ss_pred ChhHHH-HHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccC----CCcEEEEEeCChhHHHHHHHHhc--CC----CC
Q 041509 25 EPNEAE-FISALA-AGNNAQLMVVACANVANATTLALAAAAHQ----TGGRVVCILRRVEEYKLSKKILG--LD----AS 92 (211)
Q Consensus 25 ~~~~~~-lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~----~~g~v~tiE~~~~~~~~Ar~~~~--~~----~~ 92 (211)
.|.... ++..+. ...+..+|||+ |||+|+.+..+++..+. ..++|+++|+++++++.|++++. +. ..
T Consensus 67 ~p~~~~~~~~~l~~~~~~~~~VLdi-G~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 145 (227)
T 1r18_A 67 APHMHAFALEYLRDHLKPGARILDV-GSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 145 (227)
T ss_dssp CHHHHHHHHHHTTTTCCTTCEEEEE-SCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEE-CCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC
Confidence 455433 444443 34566799999 99999999999986531 02699999999999999999987 31 46
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++++.+|+.+.++. .++||+|+++...... .+.+.+.|+|||.+++.-
T Consensus 146 ~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 146 QLLIVEGDGRKGYPP-NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVPV 194 (227)
T ss_dssp SEEEEESCGGGCCGG-GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred ceEEEECCcccCCCc-CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEEE
Confidence 899999999875442 4789999999876643 467788899988887754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-13 Score=113.67 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=82.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-------------------------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA------------------------- 91 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~------------------------- 91 (211)
.++++|||| |||+|..++.|+...+ +.+|++||+++.+++.|++++. +..
T Consensus 45 ~~~~~VLDi-GCG~G~~~~~la~~~~--~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 45 FRGRDVLDL-GCNVGHLTLSIACKWG--PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp TTTSEEEEE-SCTTCHHHHHHHHHTC--CSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred cCCCcEEEe-CCCCCHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 367899999 9999999999999874 5799999999999999999876 211
Q ss_pred --------------------------------CcEEEEEcchHHHh----hhccCCccEEEEcCCc---------CcHHH
Q 041509 92 --------------------------------SHVEFVIGDAQSLL----LSHFREADFVLIDCNL---------ENHEG 126 (211)
Q Consensus 92 --------------------------------~~V~~~~gda~e~l----~~l~~~fD~VfiD~~~---------~~y~~ 126 (211)
.+|+|+++|..+.. +...++||+|+...-. ....+
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 58999999986432 2226799999987643 14577
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 041509 127 VLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 127 ~l~~~~~~L~pgG~viv~ 144 (211)
+++.+.++|+|||.+++.
T Consensus 202 ~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 202 MFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEEe
Confidence 899999999998877774
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-13 Score=106.36 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
.....++..+. ..++.+|||+ |||+|..+..++.. +.+++++|+++++++.|++++. .+++++.+|+.+..
T Consensus 32 ~~~~~~l~~~~-~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~ 102 (220)
T 3hnr_A 32 AHYEDILEDVV-NKSFGNVLEF-GVGTGNLTNKLLLA----GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFE 102 (220)
T ss_dssp TTHHHHHHHHH-HTCCSEEEEE-CCTTSHHHHHHHHT----TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCC
T ss_pred HHHHHHHHHhh-ccCCCeEEEe-CCCCCHHHHHHHhC----CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcC
Confidence 34455666654 3477899999 99999999999874 5799999999999999999866 57999999998753
Q ss_pred hhccCCccEEEEcCCcC---cH--HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 106 LSHFREADFVLIDCNLE---NH--EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~---~y--~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
. .++||+|++..... +. ...++.+.+.|+|||.+++.+...
T Consensus 103 ~--~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 103 V--PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp C--CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred C--CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 2 38999999986443 22 338999999999999998876443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=117.96 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=100.3
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
.++.....++..++...++.+|||+ |||+|..|+.++..++. .++|+++|+++.+++.+++|++ ....+++++++|+
T Consensus 242 ~~qd~~s~l~~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~~-~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~ 319 (450)
T 2yxl_A 242 IVQEEASAVASIVLDPKPGETVVDL-AAAPGGKTTHLAELMKN-KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA 319 (450)
T ss_dssp EECCHHHHHHHHHHCCCTTCEEEES-SCTTCHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred EecCchhHHHHHhcCCCCcCEEEEe-CCCccHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh
Confidence 3555666777777777788899999 79999999999998742 4899999999999999999998 2235799999999
Q ss_pred HHHhhhcc-CCccEEEEcCCcCc-------------------------HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 102 QSLLLSHF-READFVLIDCNLEN-------------------------HEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 102 ~e~l~~l~-~~fD~VfiD~~~~~-------------------------y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.+..+.+. ++||.|++|++-.. ..++++.+.++|+|||.+++++..+.+
T Consensus 320 ~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 320 RKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp TCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred hhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 87643233 68999999864310 156899999999999999887776654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=117.78 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=94.2
Q ss_pred CChhHHHHHHHHHhh-----CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE
Q 041509 24 KEPNEAEFISALAAG-----NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~-----~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~ 98 (211)
+.+....++..+... .++.+|||+ |||+|..++.++.. +.+|++||+++.+++.|++|+....-.+++++
T Consensus 212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDl-GcG~G~~~~~la~~----g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~ 286 (381)
T 3dmg_A 212 VDPASLLLLEALQERLGPEGVRGRQVLDL-GAGYGALTLPLARM----GAEVVGVEDDLASVLSLQKGLEANALKAQALH 286 (381)
T ss_dssp CCHHHHHHHHHHHHHHCTTTTTTCEEEEE-TCTTSTTHHHHHHT----TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCCEEEEE-eeeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence 445555566655443 356799999 99999999999875 56999999999999999999982222489999
Q ss_pred cchHHHhhhccCCccEEEEcCCc--------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 99 GDAQSLLLSHFREADFVLIDCNL--------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~--------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+|+.+.... .++||+|+++... .....+++.+.+.|+|||.+++..|...
T Consensus 287 ~D~~~~~~~-~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 287 SDVDEALTE-EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp CSTTTTSCT-TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred cchhhcccc-CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 999887543 5799999998532 2457889999999999999998777544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-13 Score=109.65 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhC-----CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 26 PNEAEFISALAAGN-----NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 26 ~~~~~lL~~l~~~~-----~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
+....++..++... ++.+|||+ |||+|..++.++...+ +++|+++|+++++++.|+++++ ++.+++++++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~vLDl-G~G~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 122 (254)
T 2h00_A 46 LNYIHWVEDLIGHQDSDKSTLRRGIDI-GTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK 122 (254)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEE-SCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCCEEEEe-CCChhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEE
Confidence 44555666665533 45689999 9999999999988764 5899999999999999999998 5567799999
Q ss_pred cchHH-Hhhhcc----CCccEEEEcC
Q 041509 99 GDAQS-LLLSHF----READFVLIDC 119 (211)
Q Consensus 99 gda~e-~l~~l~----~~fD~VfiD~ 119 (211)
+|+.+ .+..+. ++||+|+.+.
T Consensus 123 ~d~~~~~~~~~~~~~~~~fD~i~~np 148 (254)
T 2h00_A 123 VPQKTLLMDALKEESEIIYDFCMCNP 148 (254)
T ss_dssp CCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred cchhhhhhhhhhcccCCcccEEEECC
Confidence 99876 232222 5899999984
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=108.23 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=83.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.++++|||+ |||+|..++.++.. +.+|+++|++|.+++.|++|++ .... ++++.+|+.+.++ .++||+|+.
T Consensus 119 ~~~~~VLDi-GcG~G~l~~~la~~----g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~--~~~fD~Vv~ 190 (254)
T 2nxc_A 119 RPGDKVLDL-GTGSGVLAIAAEKL----GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP--FGPFDLLVA 190 (254)
T ss_dssp CTTCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG--GCCEEEEEE
T ss_pred CCCCEEEEe-cCCCcHHHHHHHHh----CCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc--CCCCCEEEE
Confidence 567899999 99999999988763 3499999999999999999998 3223 9999999988654 478999999
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.........++.+.+.|+|||.+++.+
T Consensus 191 n~~~~~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 191 NLYAELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8766667889999999999988887754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-13 Score=106.49 Aligned_cols=153 Identities=14% Similarity=0.039 Sum_probs=103.2
Q ss_pred HHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhcc
Q 041509 31 FISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 31 lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~ 109 (211)
.+..++. ..++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++ +++++.+|+.+.. ..
T Consensus 33 ~~~~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~--~~ 100 (211)
T 3e23_A 33 TLTKFLGELPAGAKILEL-GCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD--AI 100 (211)
T ss_dssp HHHHHHTTSCTTCEEEES-SCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC--CC
T ss_pred HHHHHHHhcCCCCcEEEE-CCCCCHHHHHHHHc----CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC--CC
Confidence 3444433 3457799999 99999999999864 579999999999999999987 4667889988764 47
Q ss_pred CCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCCCCceec----------CCCcEEEeecCCc-EEEEE
Q 041509 110 READFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFRKGSWRS----------SGSKSQLLPIGEG-LLVTR 173 (211)
Q Consensus 110 ~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~~~----------~~~~~v~lpig~G-l~v~~ 173 (211)
++||+|+...... +...+++.+.+.|+|||.+++............ ..+...+ -..| +.+..
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aG~f~~~~ 178 (211)
T 3e23_A 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARY--AEAGTWASVA 178 (211)
T ss_dssp SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHH--HHHCCCSEEE
T ss_pred CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHH--HhCCCcEEEE
Confidence 8999999875332 567899999999999998887643222110000 0000000 1123 33333
Q ss_pred Eec---cC-CCCccceEEeccccCCcee
Q 041509 174 IAA---AS-ANKKSHWIVKVDKCTGEEH 197 (211)
Q Consensus 174 ~~~---~~-~~~~~~~~~~~~~~~~~~~ 197 (211)
... .. .+..++|+..+...+.+||
T Consensus 179 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~ 206 (211)
T 3e23_A 179 VESSEGKGFDQELAQFLHVSVRKPELEH 206 (211)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCCC--
T ss_pred EEeccCCCCCCCCceEEEEEEecCcccc
Confidence 322 22 4567899999999998876
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-13 Score=114.91 Aligned_cols=95 Identities=4% Similarity=-0.033 Sum_probs=79.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC----C-CCcEEEEEcchHHHhhhccCCcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL----D-ASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~----~-~~~V~~~~gda~e~l~~l~~~fD 113 (211)
.++++|||| |||+|+++..+++. . ++|+++|+|+++++.|++++.. + ..+++++.+|+.+.+ ++||
T Consensus 71 ~~~~~VL~i-G~G~G~~~~~ll~~---~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD 141 (262)
T 2cmg_A 71 KELKEVLIV-DGFDLELAHQLFKY---D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYD 141 (262)
T ss_dssp SCCCEEEEE-SSCCHHHHHHHTTS---S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEE
T ss_pred CCCCEEEEE-eCCcCHHHHHHHhC---C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCC
Confidence 467899999 99999998888754 2 7999999999999999998751 2 468999999998765 7899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|++|...+. .+++.+.+.|+|||.+++.
T Consensus 142 ~Ii~d~~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 142 LIFCLQEPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEEESSCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred EEEECCCChH--HHHHHHHHhcCCCcEEEEE
Confidence 9999976543 4899999999998877663
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-13 Score=109.32 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++.+|||+ |||+|..+..++. .+.+|+++|+++.+++.|++++. +...+++++.+|+.+..+ .++||+|+.
T Consensus 66 ~~~~vLDi-GcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVP-GCGGGHDVVAMAS----PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLIFD 138 (235)
T ss_dssp CCEEEEEE-TCTTCHHHHHHCB----TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--SSCEEEEEE
T ss_pred CCCCEEEe-CCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--CCCeeEEEE
Confidence 45699999 9999999998864 37899999999999999999987 345789999999988643 569999997
Q ss_pred cCC-----cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DCN-----LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~~-----~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
... ..+...+++.+.+.|+|||.+++.+.
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 542 23678899999999999998887664
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=113.64 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=84.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++++|||+ |||+|+.|+.+|... ..+|+++|+||.+++.+++|++ ++.++|+++++|+.++.+ .+.||.|
T Consensus 123 ~~~g~~VlD~-~aG~G~~~i~~a~~g---~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--~~~~D~V 196 (278)
T 3k6r_A 123 AKPDELVVDM-FAGIGHLSLPIAVYG---KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRI 196 (278)
T ss_dssp CCTTCEEEET-TCTTTTTTHHHHHHT---CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEE
T ss_pred cCCCCEEEEe-cCcCcHHHHHHHHhc---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--ccCCCEE
Confidence 3567899999 899999999988752 4699999999999999999998 678899999999998764 5789999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++..... .++++.+.++|+|||.+.+.++
T Consensus 197 i~~~p~~~-~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 197 LMGYVVRT-HEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp EECCCSSG-GGGHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCcH-HHHHHHHHHHcCCCCEEEEEee
Confidence 99976543 3577788888999776655443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=112.72 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=79.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHc------cCC----CcEEEEEeCCh--------------hHHHHHHHHhcC----
Q 041509 38 GNNAQLMVVACANVANATTLALAAAA------HQT----GGRVVCILRRV--------------EEYKLSKKILGL---- 89 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~------~~~----~g~v~tiE~~~--------------~~~~~Ar~~~~~---- 89 (211)
..++.+|||| |+|+||++++++++. .+. ..+++++|.+| +..+.|+++++.
T Consensus 58 ~~~~~~ILEi-GfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~ 136 (257)
T 2qy6_A 58 PHPLFVVAES-GFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMP 136 (257)
T ss_dssp SSSEEEEEES-CCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCS
T ss_pred CCCCCEEEEE-CCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccc
Confidence 3456789999 999999999988764 332 25899999987 444567776541
Q ss_pred --------C---CCcEEEEEcchHHHhhhccC----CccEEEEcCCc--Cc----HHHHHHHHHhcCCCCcEEE
Q 041509 90 --------D---ASHVEFVIGDAQSLLLSHFR----EADFVLIDCNL--EN----HEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 90 --------~---~~~V~~~~gda~e~l~~l~~----~fD~VfiD~~~--~~----y~~~l~~~~~~L~pgG~vi 142 (211)
+ ..+++++.||+.+.++.+.+ +||.||+|+.. .+ +.++++.+.++|+|||.++
T Consensus 137 ~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 137 LPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp CSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred ccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence 1 24688999999999987643 89999999732 22 6889999999999977654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-13 Score=118.18 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=87.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCc-EEEEEcchHHHhh-hccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASH-VEFVIGDAQSLLL-SHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~-V~~~~gda~e~l~-~l~~~fD~ 114 (211)
.++.+|||+ +||+|..++.+|...+ ..++|+++|+++++++.+++|++ ++.++ ++++++|+.+.+. ...++||+
T Consensus 51 ~~g~~VLDl-faGtG~~sl~aa~~~~-ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADP-LSASGIRAIRFLLETS-CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp CSCEEEEES-SCTTSHHHHHHHHHCS-CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred CCCCEEEEC-CCcccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence 346789999 7999999999998653 13799999999999999999999 55566 9999999999987 66678999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|++|+ .....++++.+.++|+|||.+++..
T Consensus 129 V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP-FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 99998 3344678999999999988776654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=103.81 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH
Q 041509 25 EPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL 104 (211)
Q Consensus 25 ~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~ 104 (211)
.+...+++..+.... +.+|||+ |||+|..+..++.. +.+|+++|+++++++.|+++. .+++++++|+.+.
T Consensus 27 ~~~~~~~l~~~~~~~-~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~ 96 (203)
T 3h2b_A 27 EDPDRVLIEPWATGV-DGVILDV-GSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTH----PSVTFHHGTITDL 96 (203)
T ss_dssp TCTTHHHHHHHHHHC-CSCEEEE-TCTTCHHHHHHHHT----TCCEEEECCCHHHHHHHHHHC----TTSEEECCCGGGG
T ss_pred cHHHHHHHHHHhccC-CCeEEEe-cCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHhC----CCCeEEeCccccc
Confidence 344566777776554 7889999 99999999999875 569999999999999999883 3689999999875
Q ss_pred hhhccCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 105 LLSHFREADFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+...++||+|++... .++....++.+.+.|+|||.+++.+
T Consensus 97 -~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 97 -SDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp -GGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -ccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 323689999998652 2367899999999999999888765
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=103.47 Aligned_cols=111 Identities=21% Similarity=0.111 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
...++..+....++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++ .+ ..+++++.+|+.+..
T Consensus 34 ~~~~~~~l~~~~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~--~~-~~~~~~~~~d~~~~~-- 103 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLEL-ASGTGYWTRHLSGL----ADRVTALDGSAEMIAEAGR--HG-LDNVEFRQQDLFDWT-- 103 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEE-SCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHGG--GC-CTTEEEEECCTTSCC--
T ss_pred HHHHHHHHhcCCCCCeEEEE-CCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHh--cC-CCCeEEEecccccCC--
Confidence 44556666556667899999 99999999999876 5799999999999999998 32 367999999998772
Q ss_pred ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 108 HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
..++||+|++..... .....++.+.+.|+|||.+++.+...
T Consensus 104 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 368999999876432 24788999999999999888876533
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=115.08 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=85.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---------------CCCcEEEEEcchHH
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---------------DASHVEFVIGDAQS 103 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---------------~~~~V~~~~gda~e 103 (211)
++.+|||+ |||+|..++.+|...+ +.+|+++|+++++++.|++|++ . ..++++++++|+.+
T Consensus 47 ~~~~VLDl-~aGtG~~~l~~a~~~~--~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~ 123 (378)
T 2dul_A 47 NPKIVLDA-LSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR 123 (378)
T ss_dssp CCSEEEES-SCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH
T ss_pred CCCEEEEC-CCchhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHH
Confidence 67899999 8999999999998763 4689999999999999999997 4 33459999999999
Q ss_pred HhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 104 LLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+....++||+|++|+. ....++++.+.+.|+|||.+++.
T Consensus 124 ~~~~~~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 124 LMAERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHHSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhccCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEE
Confidence 88755568999999974 33468889999999998876664
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=102.75 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=83.9
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
+..++...++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++.....+++++.+|+.+. +...++
T Consensus 21 l~~~~~~~~~~~vLdi-GcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 94 (202)
T 2kw5_A 21 LVSVANQIPQGKILCL-AEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF-DIVADA 94 (202)
T ss_dssp HHHHHHHSCSSEEEEC-CCSCTHHHHHHHTT----TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB-SCCTTT
T ss_pred HHHHHHhCCCCCEEEE-CCCCCHhHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc-CCCcCC
Confidence 3333343344499999 99999999888864 56999999999999999999872122799999999875 222578
Q ss_pred ccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 112 ADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 112 fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
||+|+..... .+...+++.+.+.|+|||.+++.+.
T Consensus 95 fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 95 WEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp CSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred ccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999985432 2467889999999999998888653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=106.11 Aligned_cols=109 Identities=12% Similarity=0.019 Sum_probs=87.4
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhcc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~ 109 (211)
+.+..++...++.+|||+ |||+|..+..++... ..+++++|+++++++.|+++... .+++++.+|+.+. +...
T Consensus 33 ~~l~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~-~~~~ 105 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDL-GCGFGWFCRWAHEHG---ASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKL-HLPQ 105 (243)
T ss_dssp HHHHHHSCCCTTCEEEEE-TCTTCHHHHHHHHTT---CSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGC-CCCT
T ss_pred HHHHHhccccCCCEEEEE-cCcCCHHHHHHHHCC---CCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhc-cCCC
Confidence 345555566678899999 999999999988751 24999999999999999988763 4799999999875 2225
Q ss_pred CCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||+|+..... .+....++.+.+.|+|||.+++..
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 789999987543 356889999999999999887754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=107.13 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=83.6
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++.....+++++.+|+.+. +...++||+|++
T Consensus 37 ~~~~~~vLDi-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~ 110 (263)
T 2yqz_A 37 KGEEPVFLEL-GVGTGRIALPLIAR----GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI-PLPDESVHGVIV 110 (263)
T ss_dssp SSSCCEEEEE-TCTTSTTHHHHHTT----TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC-CSCTTCEEEEEE
T ss_pred CCCCCEEEEe-CCcCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC-CCCCCCeeEEEE
Confidence 4567899999 99999999988864 57999999999999999999853356899999999764 322578999998
Q ss_pred cCCc---CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNL---ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~---~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.... .+....++.+.+.|+|||.+++.
T Consensus 111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 7543 25688999999999999988775
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=106.37 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=86.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++.+|||+ |||+|..+..++... ..+|+++|+++.+++.|++++... .+++++.+|+.+. +...++||+|++
T Consensus 91 ~~~~~~vLDi-G~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~-~~~~~~fD~v~~ 164 (254)
T 1xtp_A 91 GHGTSRALDC-GAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETA-TLPPNTYDLIVI 164 (254)
T ss_dssp TCCCSEEEEE-TCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGC-CCCSSCEEEEEE
T ss_pred ccCCCEEEEE-CCCcCHHHHHHHHhh---cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHC-CCCCCCeEEEEE
Confidence 3467899999 999999999998764 468999999999999999998743 6899999999874 322578999998
Q ss_pred cCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.... .+....++.+.+.|+|||.+++.++...
T Consensus 165 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 201 (254)
T 1xtp_A 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 7543 2357889999999999999999887543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=114.55 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=87.6
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------C-C-CCcEEEEEcchHHHh---
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------L-D-ASHVEFVIGDAQSLL--- 105 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~-~-~~~V~~~~gda~e~l--- 105 (211)
..++.+|||+ |||+|..+..++....+ +++|+++|+++++++.|+++++ + + ..+++++.+|+.+..
T Consensus 81 ~~~~~~VLDl-GcG~G~~~~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 81 SLEGATVLDL-GCGTGRDVYLASKLVGE-HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GGTTCEEEEE-SCTTSHHHHHHHHHHTT-TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCCEEEEe-cCccCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 4467899999 99999999999988743 6899999999999999999875 1 2 268999999998752
Q ss_pred --hhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 106 --LSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 106 --~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+...++||+|+..... .+....++.+.+.|+|||.+++.+
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2125799999988643 367899999999999999888865
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=113.64 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=86.6
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-------c--CC-CCcEEEEEcchHHH
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-------G--LD-ASHVEFVIGDAQSL 104 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-------~--~~-~~~V~~~~gda~e~ 104 (211)
.+...+..+|||+ |||+|..++.+|...+ ..+|++||+++++++.|+++. + ++ ..+|+|++||+.+.
T Consensus 168 ~l~l~~gd~VLDL-GCGtG~l~l~lA~~~g--~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 168 EIKMTDDDLFVDL-GSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp HHCCCTTCEEEEE-SCTTSHHHHHHHHHCC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred hcCCCCCCEEEEe-CCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence 3456778899999 9999999999987642 457999999999999999864 2 44 37899999999875
Q ss_pred hhhc-cCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 105 LLSH-FREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 105 l~~l-~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-... ...||+||+... .++....+.++.+.|+|||.+++.+....
T Consensus 245 p~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 3211 257999998653 23567788889999999998887655444
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=106.93 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=84.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+..++... ..+|+++|+++++++.|++++. ..+++++.+|+.+. +...++||+|+
T Consensus 41 ~~~~~~~vLD~-GcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~-~~~~~~fD~v~ 113 (253)
T 3g5l_A 41 PDFNQKTVLDL-GCGFGWHCIYAAEHG---AKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDI-AIEPDAYNVVL 113 (253)
T ss_dssp CCCTTCEEEEE-TCTTCHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGC-CCCTTCEEEEE
T ss_pred hccCCCEEEEE-CCCCCHHHHHHHHcC---CCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhC-CCCCCCeEEEE
Confidence 33467899999 999999999998753 2399999999999999999877 56899999999764 32257999999
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.... .+....++.+.+.|+|||.+++..
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 114 SSLALHYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EchhhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 87643 467889999999999999887753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=106.71 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=80.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
..++++|||+ |||+|..+..++.. +.+|+++|+++++++.|+++ ++++.+|+.+.+..+ .++||+|+
T Consensus 39 ~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~ 106 (240)
T 3dli_A 39 FKGCRRVLDI-GCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLPDKYLDGVM 106 (240)
T ss_dssp TTTCSCEEEE-TCTTTHHHHHHHHH----TCCEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred hcCCCeEEEE-eCCCCHHHHHHHhC----CCcEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcCCCCeeEEE
Confidence 3456899999 99999999988875 46899999999999999875 789999999876333 57999999
Q ss_pred EcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..... +++..+++.+.+.|+|||.+++..
T Consensus 107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 87532 256899999999999999888755
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-13 Score=111.67 Aligned_cols=111 Identities=9% Similarity=0.066 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH
Q 041509 25 EPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL 104 (211)
Q Consensus 25 ~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~ 104 (211)
+++..++|.... ....+|||+ |||+|..+..|+.. +.+|++||++++|++.|++ ..+|+++++|+.+.
T Consensus 26 p~~l~~~l~~~~--~~~~~vLDv-GcGtG~~~~~l~~~----~~~v~gvD~s~~ml~~a~~-----~~~v~~~~~~~e~~ 93 (257)
T 4hg2_A 26 PRALFRWLGEVA--PARGDALDC-GCGSGQASLGLAEF----FERVHAVDPGEAQIRQALR-----HPRVTYAVAPAEDT 93 (257)
T ss_dssp CHHHHHHHHHHS--SCSSEEEEE-SCTTTTTHHHHHTT----CSEEEEEESCHHHHHTCCC-----CTTEEEEECCTTCC
T ss_pred HHHHHHHHHHhc--CCCCCEEEE-cCCCCHHHHHHHHh----CCEEEEEeCcHHhhhhhhh-----cCCceeehhhhhhh
Confidence 344445554443 234689999 99999999999854 5799999999999987764 25799999999875
Q ss_pred hhhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 105 LLSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+-.+++||+|+...... +....++++.+.|+|||.+++..+..
T Consensus 94 -~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 94 -GLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp -CCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -cccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 32268999999865432 46789999999999999887776543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=106.94 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=92.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC---CCcEEEE
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD---ASHVEFV 97 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~---~~~V~~~ 97 (211)
.......++|..++...++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|+++.. .. ..++.+.
T Consensus 40 ~~~~~~~~~l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (293)
T 3thr_A 40 SRTAEYKAWLLGLLRQHGCHRVLDV-ACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 114 (293)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEET-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE
T ss_pred chHHHHHHHHHHHhcccCCCEEEEe-cCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe
Confidence 3445566777777777788999999 99999999999875 4599999999999999998873 11 2468999
Q ss_pred EcchHHHhhh--ccCCccEEEEcC-C---cCc-------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 98 IGDAQSLLLS--HFREADFVLIDC-N---LEN-------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 98 ~gda~e~l~~--l~~~fD~VfiD~-~---~~~-------y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+.+.... ..++||+|++.+ . ..+ ....++.+.+.|+|||.+++..
T Consensus 115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999876421 257999999862 1 123 7889999999999988887654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-13 Score=110.23 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
|....++..+.. ..++.+|||+ |||+|+.+..++.. +.+|+++|+++.+++.|+++ ..+++++++|+.+
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~ 102 (226)
T 3m33_A 32 PDPELTFDLWLSRLLTPQTRVLEA-GCGHGPDAARFGPQ----AARWAAYDFSPELLKLARAN----APHADVYEWNGKG 102 (226)
T ss_dssp SCTTHHHHHHHHHHCCTTCEEEEE-SCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHH----CTTSEEEECCSCS
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEe-CCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHh----CCCceEEEcchhh
Confidence 433344444332 3567899999 99999999999875 57999999999999999998 3469999999976
Q ss_pred Hhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEE
Q 041509 104 LLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 104 ~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
.++.. .++||+|+...+ ....++.+.+.|+|||.++
T Consensus 103 ~~~~~~~~~fD~v~~~~~---~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 103 ELPAGLGAPFGLIVSRRG---PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp SCCTTCCCCEEEEEEESC---CSGGGGGHHHHEEEEEEEE
T ss_pred ccCCcCCCCEEEEEeCCC---HHHHHHHHHHHcCCCcEEE
Confidence 66543 579999998744 4467788888999988776
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=112.55 Aligned_cols=99 Identities=9% Similarity=0.008 Sum_probs=83.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||+ |||+|..++. |. .+.+|+++|.++++++.|++|++ ++.++++++++|+.+.+ ++||+|+
T Consensus 194 ~~~~~VLDl-g~G~G~~~l~-a~----~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDM-FAGVGPFSIA-CK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVI 263 (336)
T ss_dssp CTTCEEEET-TCTTSHHHHH-TT----TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEE
T ss_pred CCCCEEEEc-cCccCHHHHh-cc----CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEE
Confidence 477899999 8999999998 75 26899999999999999999998 55578999999999875 7899999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+|.+.. ..++++.+.++|+|||.+++.++..
T Consensus 264 ~dpP~~-~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 264 MNLPKF-AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ECCTTT-GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ECCcHh-HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 997543 3478888899999988877766543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=107.00 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=84.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+..++...+ +++|+++|+++++++.|+++ ..+++++.+|+.+.. ..++||+|+
T Consensus 30 ~~~~~~~vLdi-G~G~G~~~~~l~~~~~--~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~--~~~~fD~v~ 100 (259)
T 2p35_A 30 PLERVLNGYDL-GCGPGNSTELLTDRYG--VNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK--PAQKADLLY 100 (259)
T ss_dssp CCSCCSSEEEE-TCTTTHHHHHHHHHHC--TTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC--CSSCEEEEE
T ss_pred CCCCCCEEEEe-cCcCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC--ccCCcCEEE
Confidence 34567899999 9999999999998873 67999999999999999988 346899999998754 367999999
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..... .+....++.+.+.|+|||.+++..
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 101 ANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 87643 367889999999999999888765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=104.94 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=84.3
Q ss_pred HHHHHHHHhh---CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 29 AEFISALAAG---NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~---~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
.+++..++.. .++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++.....+++++++|+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDl-GcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 101 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDL-ACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA 101 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEE-TCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC
T ss_pred HHHHHHHHHHhcccCCCEEEEe-CCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc
Confidence 4455555443 356899999 99999999999864 579999999999999999998722237999999998753
Q ss_pred hhccCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 106 LSHFREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv 143 (211)
..++||+|++.... .+....++.+.+.|+|||.+++
T Consensus 102 --~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 102 --FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp --CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 25789999975321 2457889999999999887765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=104.84 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|..+..++.. +.+|+++|+++.+++.|+++.. ..+++++.+|+.+. +...++||+|+..
T Consensus 52 ~~~~~vLDi-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 123 (242)
T 3l8d_A 52 KKEAEVLDV-GCGDGYGTYKLSRT----GYKAVGVDISEVMIQKGKERGE--GPDLSFIKGDLSSL-PFENEQFEAIMAI 123 (242)
T ss_dssp CTTCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHTTTC--BTTEEEEECBTTBC-SSCTTCEEEEEEE
T ss_pred CCCCeEEEE-cCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhcc--cCCceEEEcchhcC-CCCCCCccEEEEc
Confidence 367799999 99999999999875 5799999999999999998754 46799999999875 3226799999987
Q ss_pred CCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... .+....++.+.+.|+|||.+++.+
T Consensus 124 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 124 NSLEWTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp SCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 533 366789999999999999888866
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=108.25 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=87.9
Q ss_pred HHHHHHHhh---CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-----CCc--------
Q 041509 30 EFISALAAG---NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-----ASH-------- 93 (211)
Q Consensus 30 ~lL~~l~~~---~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-----~~~-------- 93 (211)
+++..+... .++.+|||+ |||+|..++.++..+...+.+|+++|+++++++.|++++... .++
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~-gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDP-CCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEET-TCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEEC-CCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 455444433 246789999 899999999999873112579999999999999999988722 112
Q ss_pred -----------------EE-------------EEEcchHHHhhh----ccCCccEEEEcCCc------------CcHHHH
Q 041509 94 -----------------VE-------------FVIGDAQSLLLS----HFREADFVLIDCNL------------ENHEGV 127 (211)
Q Consensus 94 -----------------V~-------------~~~gda~e~l~~----l~~~fD~VfiD~~~------------~~y~~~ 127 (211)
|+ ++++|+.+.++. ..++||+|+.+... ..+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~ 196 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL 196 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence 67 999999876531 23489999997531 235688
Q ss_pred HHHHHhcCCCCcEEEEEecCC
Q 041509 128 LRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 128 l~~~~~~L~pgG~viv~dn~~ 148 (211)
++.+.+.|+|||.+++.++..
T Consensus 197 l~~~~~~LkpgG~l~~~~~~~ 217 (250)
T 1o9g_A 197 LRSLASALPAHAVIAVTDRSR 217 (250)
T ss_dssp HHHHHHHSCTTCEEEEEESSS
T ss_pred HHHHHHhcCCCcEEEEeCcch
Confidence 999999999999998876643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-12 Score=104.29 Aligned_cols=111 Identities=11% Similarity=-0.051 Sum_probs=84.0
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh------HHHHHHHHhc--CCCCcEEEEEcc-hHH-Hh
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE------EYKLSKKILG--LDASHVEFVIGD-AQS-LL 105 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~------~~~~Ar~~~~--~~~~~V~~~~gd-a~e-~l 105 (211)
+...++++|||| |||+|+.+..++...++ .++|+++|++++ +++.|++++. +..++++++.+| ... .+
T Consensus 39 ~~~~~~~~vLDi-GcG~G~~~~~l~~~~g~-~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 116 (275)
T 3bkx_A 39 WQVKPGEKILEI-GCGQGDLSAVLADQVGS-SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG 116 (275)
T ss_dssp HTCCTTCEEEEE-SCTTSHHHHHHHHHHCT-TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCG
T ss_pred cCCCCCCEEEEe-CCCCCHHHHHHHHHhCC-CCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccC
Confidence 345677899999 99999999999987632 589999999997 9999999987 445789999998 321 12
Q ss_pred hhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 106 LSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+...++||+|++.... .+...+++.+..+++|||.+++.+...
T Consensus 117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 2225789999987643 234556666677777799888876433
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=104.22 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=83.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC----CCcEEEEEcchHHHhhhccCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD----ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~----~~~V~~~~gda~e~l~~l~~~f 112 (211)
.+..+|||+ |||+|..+..++.. +.+|+++|+++.+++.|++++. +. ..+++++.+|+.+. +...++|
T Consensus 29 ~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~ 102 (235)
T 3sm3_A 29 QEDDEILDI-GCGSGKISLELASK----GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSF 102 (235)
T ss_dssp CTTCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCE
T ss_pred CCCCeEEEE-CCCCCHHHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCce
Confidence 467899999 99999999999875 5799999999999999999987 32 34799999999865 3226789
Q ss_pred cEEEEcCCcC---c---HHHHHHHHHhcCCCCcEEEEEec
Q 041509 113 DFVLIDCNLE---N---HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 113 D~VfiD~~~~---~---y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+|++..... + ....++.+.+.|+|||.+++.+-
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9999875332 2 34899999999999998888763
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-12 Score=109.97 Aligned_cols=107 Identities=8% Similarity=-0.021 Sum_probs=88.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh-hhccCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL-LSHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l-~~l~~~fD~V 115 (211)
.++++|||| |||+|..+..+++..+ +.+++.+|. |++++.|++++. +..++|+++.+|+.+.- + +.++||+|
T Consensus 178 ~~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~p~~~D~v 252 (363)
T 3dp7_A 178 HHPKRLLDI-GGNTGKWATQCVQYNK--EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-FPTGFDAV 252 (363)
T ss_dssp GCCSEEEEE-SCTTCHHHHHHHHHST--TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-CCCCCSEE
T ss_pred cCCCEEEEe-CCCcCHHHHHHHHhCC--CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-CCCCcCEE
Confidence 467899999 9999999999999874 579999999 999999999988 55679999999997641 1 23689999
Q ss_pred EEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 116 LIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
++-.-. ++....++.+.+.|+|||.+++.|.....
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 985432 23467899999999999999998866543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=108.77 Aligned_cols=112 Identities=14% Similarity=0.003 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH-H
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-L 104 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e-~ 104 (211)
+...+.+...+...++.+|||+ |||+|..++.|++. +.+|++||++++|++.|++++... .+..-..+... .
T Consensus 31 ~~~~~~il~~l~l~~g~~VLDl-GcGtG~~a~~La~~----g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~ 103 (261)
T 3iv6_A 31 PSDRENDIFLENIVPGSTVAVI-GASTRFLIEKALER----GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEI 103 (261)
T ss_dssp CCHHHHHHHTTTCCTTCEEEEE-CTTCHHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEE-eCcchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeeccccc
Confidence 4455555555566778899999 99999999999864 679999999999999999998732 22222222211 0
Q ss_pred hhhccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 105 LLSHFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~d 145 (211)
...+.++||+|+.+.... +....++.+.++| |||.+++..
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 112357999999986432 4466888888889 999988764
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=101.89 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=82.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh---ccC
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS---HFR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~---l~~ 110 (211)
......++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|+++ .+++++.+|+.+.... ..+
T Consensus 46 ~~~~~~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 46 LAILGRQPERVLDL-GCGEGWLLRALADR----GIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp HHHHHTCCSEEEEE-TCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCC
T ss_pred HHhhcCCCCEEEEe-CCCCCHHHHHHHHC----CCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCC
Confidence 33345577999999 99999999988864 56999999999999999987 4577889998887321 144
Q ss_pred CccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 111 EADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 111 ~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+||+|++... ..+....++.+.+.|+|||.+++.+.
T Consensus 116 ~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 116 DYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 6999998753 34678899999999999998888653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=106.44 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=84.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++.+|||+ |||+|..+..++.. ..++|+++|+++++++.|++++. +...+++++++|+.+......++||+|+
T Consensus 63 ~~~~~vLDi-GcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 138 (298)
T 1ri5_A 63 KRGDSVLDL-GCGKGGDLLKYERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS 138 (298)
T ss_dssp CTTCEEEEE-TCTTTTTHHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred CCCCeEEEE-CCCCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEE
Confidence 567899999 99999988888765 24699999999999999999987 4456899999999875211257899999
Q ss_pred EcCCc-------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNL-------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~-------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.... .+....++.+.+.|+|||.+++..
T Consensus 139 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 139 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 87543 345789999999999999887754
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=113.33 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=85.7
Q ss_pred hhHHH-HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchH
Q 041509 26 PNEAE-FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQ 102 (211)
Q Consensus 26 ~~~~~-lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~ 102 (211)
+...+ ++..+....+.++|||+ |||+|..++.||.. +.+|+++|.++++++.|++|++ +. + ++|+.+|+.
T Consensus 275 ~~~~e~l~~~~~~~~~~~~VLDl-gcG~G~~sl~la~~----~~~V~gvD~s~~ai~~A~~n~~~ngl-~-v~~~~~d~~ 347 (425)
T 2jjq_A 275 SYQAVNLVRKVSELVEGEKILDM-YSGVGTFGIYLAKR----GFNVKGFDSNEFAIEMARRNVEINNV-D-AEFEVASDR 347 (425)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEEE-TCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTC-C-EEEEECCTT
T ss_pred HHHHHHHHHHhhccCCCCEEEEe-eccchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCC-c-EEEEECChH
Confidence 34444 33333335667899999 99999999999874 5699999999999999999998 44 4 999999999
Q ss_pred HHhhhccCCccEEEEcCCcCcH-HHHHHHHHhcCCCCcEEEEEec
Q 041509 103 SLLLSHFREADFVLIDCNLENH-EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y-~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.++ .+||+|++|.+...+ ...++.+. .|+|+|.+++..|
T Consensus 348 ~~~~---~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 348 EVSV---KGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp TCCC---TTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred HcCc---cCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEECC
Confidence 8754 289999999886544 34666665 4789998888765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=104.20 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh
Q 041509 27 NEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 27 ~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~ 106 (211)
...+++..+....++.+|||+ |||+|..++.++.. .+.+|+++|+++++++.|++++.....+++++.+|+.+. +
T Consensus 10 ~~~~~~~~~~~~~~~~~vLDi-GcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~ 84 (209)
T 2p8j_A 10 QLYRFLKYCNESNLDKTVLDC-GAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-P 84 (209)
T ss_dssp HHHHHHHHHHHSSSCSEEEEE-SCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-C
T ss_pred hHHHHHHHHhccCCCCEEEEE-CCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-C
Confidence 345666666666678899999 99999875554433 267999999999999999999872125799999999874 3
Q ss_pred hccCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 107 SHFREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
...++||+|+..... .+....++.+.+.|+|||.+++.+.
T Consensus 85 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 85 FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 225789999986432 3567889999999999998887664
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=111.62 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=81.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh-ccCCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS-HFREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~-l~~~fD~Vf 116 (211)
++++|||+ | |+|..++.++...+ .++|+++|+++++++.|++|++ ++. +|+++.+|+.+.++. ..++||+|+
T Consensus 172 ~~~~VLDl-G-G~G~~~~~la~~~~--~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 172 ENKDIFVL-G-DDDLTSIALMLSGL--PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp TTCEEEEE-S-CTTCHHHHHHHHTC--CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCCEEEEE-C-CCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEE
Confidence 57899999 9 99999999987632 4799999999999999999998 654 899999999885552 356899999
Q ss_pred EcCCcC--cHHHHHHHHHhcCCCCcEE
Q 041509 117 IDCNLE--NHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 117 iD~~~~--~y~~~l~~~~~~L~pgG~v 141 (211)
+|.... ....+++.+.+.|+|||.+
T Consensus 247 ~~~p~~~~~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 247 TDPPETLEAIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp ECCCSSHHHHHHHHHHHHHTBCSTTCE
T ss_pred ECCCCchHHHHHHHHHHHHHcccCCeE
Confidence 997542 3577889999999999954
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=106.95 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
..+...+.+...+...++.+|||+ |||+|..+..++. .+.+|+++|+++.+++.|+++. +++++++|+.+
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~vLDi-GcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~ 87 (261)
T 3ege_A 18 PDIRIVNAIINLLNLPKGSVIADI-GAGTGGYSVALAN----QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAEN 87 (261)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEE-TCTTSHHHHHHHT----TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTS
T ss_pred ccHHHHHHHHHHhCCCCCCEEEEE-cCcccHHHHHHHh----CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhh
Confidence 445666667666666788999999 9999999999985 3689999999999998776543 79999999976
Q ss_pred HhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 104 LLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. +...++||+|+..... .+....++.+.+.|+ ||.+++.+.
T Consensus 88 ~-~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 88 L-ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp C-CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred C-CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 4 3225799999987643 467899999999999 997777663
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=103.62 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=81.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++.+|||+ |||+|..+..++... .+++++|+++++++.|++++.....+++++++|+.+. +...++||+|++..
T Consensus 38 ~~~~vLDl-G~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~ 111 (227)
T 1ve3_A 38 KRGKVLDL-ACGVGGFSFLLEDYG----FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFID 111 (227)
T ss_dssp SCCEEEEE-TCTTSHHHHHHHHTT----CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEES
T ss_pred CCCeEEEE-eccCCHHHHHHHHcC----CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-CCCCCcEEEEEEcC
Confidence 46799999 999999999888753 3999999999999999999872237899999999874 21246899999876
Q ss_pred C--cC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 120 N--LE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 120 ~--~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. .. +..+.++.+.+.|+|||.+++.+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 112 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5 22 45778999999999999888765
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=105.29 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHhhC--CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAAGN--NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~~~--~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
....+++..++... ++.+|||+ |||+|..+..++.. +.+++++|+++++++.|++++.....+++++++|+.+
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdi-G~G~G~~~~~l~~~----~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 95 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDL-ACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEE-TCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEe-CCCCCHHHHHHHHC----CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 34455666665544 67899999 99999999988865 4689999999999999999987222279999999987
Q ss_pred HhhhccCCccEEEEcC-Cc------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDC-NL------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~-~~------~~y~~~l~~~~~~L~pgG~viv 143 (211)
... .++||+|++.. .. .+....++.+.+.|+|||.+++
T Consensus 96 ~~~--~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 96 LNI--NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCC--SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCc--cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 532 47899999876 21 3567889999999999887766
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=111.65 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=92.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.+..++.+..++ ..++.+|||+ |||+|..++.++...+ .++|+++|+|+++++.|++|++ ++.++|+++++|
T Consensus 201 ~l~~~la~~l~~~~-~~~~~~vLD~-gCGsG~~~i~~a~~~~--~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D 276 (373)
T 3tm4_A 201 HLKASIANAMIELA-ELDGGSVLDP-MCGSGTILIELALRRY--SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD 276 (373)
T ss_dssp CCCHHHHHHHHHHH-TCCSCCEEET-TCTTCHHHHHHHHTTC--CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECC
T ss_pred CccHHHHHHHHHhh-cCCCCEEEEc-cCcCcHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 35666777777777 6678899999 8999999999987642 4699999999999999999998 666789999999
Q ss_pred hHHHhhhccCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+... ..++||+|+.|.+-. .|.++++.+.+.| +|+.+++..
T Consensus 277 ~~~~~~-~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~ 330 (373)
T 3tm4_A 277 ATQLSQ-YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT 330 (373)
T ss_dssp GGGGGG-TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEES
T ss_pred hhhCCc-ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence 998643 257899999986521 2677888888877 444455433
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=108.90 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=81.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC----CcEEEEEcchHHHhhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA----SHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~----~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
++.+|||+ |||+|..+..|+.. +.+|+++|+++.+++.|++++.... .+++++++|+.+. + ..++||+|
T Consensus 82 ~~~~vLDl-GcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~v 154 (299)
T 3g2m_A 82 VSGPVLEL-AAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-LDKRFGTV 154 (299)
T ss_dssp CCSCEEEE-TCTTTTTHHHHHTT----TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-CSCCEEEE
T ss_pred CCCcEEEE-eccCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-cCCCcCEE
Confidence 44589999 99999999999864 5789999999999999999988322 7899999999875 3 26899999
Q ss_pred EEcC------CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDC------NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~------~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++.. +..+...+++.+.+.|+|||.+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 155 VISSGSINELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp EECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 8642 12245789999999999988887754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=113.09 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=100.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.++.....++..++...++.+|||+ |||+|..|..++...+ +++|+++|+++.+++.+++|++...-+++++++|+.
T Consensus 229 ~~qd~~s~~~~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~--~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~ 305 (429)
T 1sqg_A 229 TVQDASAQGCMTWLAPQNGEHILDL-CAAPGGKTTHILEVAP--EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR 305 (429)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEE-SCTTCHHHHHHHHHCT--TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT
T ss_pred EeeCHHHHHHHHHcCCCCcCeEEEE-CCCchHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchh
Confidence 4666677778878888888899999 7999999999998874 489999999999999999999821224899999998
Q ss_pred HHhhhc-cCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 103 SLLLSH-FREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 103 e~l~~l-~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+..+.+ .++||.|++|++-. .+.++++.+.++|+|||.++++...+.+
T Consensus 306 ~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~ 379 (429)
T 1sqg_A 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 379 (429)
T ss_dssp CTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred hchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 765323 36899999996421 0247889999999999998887776654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=110.58 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=75.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc----------
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF---------- 109 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~---------- 109 (211)
+++|||+ |||+|..|+++|.. .++|+++|.++++++.|++|++ ...++++|+.+|+.+.++.+.
T Consensus 214 ~~~vLDl-~cG~G~~~l~la~~----~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~ 288 (369)
T 3bt7_A 214 KGDLLEL-YCGNGNFSLALARN----FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 288 (369)
T ss_dssp CSEEEEE-SCTTSHHHHHHGGG----SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGG
T ss_pred CCEEEEc-cCCCCHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccc
Confidence 5789999 89999999998864 4699999999999999999998 323689999999999876442
Q ss_pred -----CCccEEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 -----READFVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 -----~~fD~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+||+|++|.+... ..+.++.+ +++|.++.+.
T Consensus 289 ~~~~~~~fD~Vv~dPPr~g~~~~~~~~l----~~~g~ivyvs 326 (369)
T 3bt7_A 289 IDLKSYQCETIFVDPPRSGLDSETEKMV----QAYPRILYIS 326 (369)
T ss_dssp SCGGGCCEEEEEECCCTTCCCHHHHHHH----TTSSEEEEEE
T ss_pred cccccCCCCEEEECcCccccHHHHHHHH----hCCCEEEEEE
Confidence 27999999988653 33444444 3567666544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=103.13 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 29 AEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 29 ~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
.+.+..+.. ..+..+|||+ |||+|..+..++... .+|+++|+++.+++.|++++. ..+++++++|+.+....
T Consensus 44 ~~~~~~~~~~~~~~~~vLD~-GcG~G~~~~~la~~~----~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 44 VVDLPRFELLFNPELPLIDF-ACGNGTQTKFLSQFF----PRVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQA 116 (245)
T ss_dssp HHHHHHHTTTSCTTSCEEEE-TCTTSHHHHHHHHHS----SCEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHH
T ss_pred HHHHHHHhhccCCCCeEEEE-cCCCCHHHHHHHHhC----CCEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccc
Confidence 344444433 3456789999 999999999999864 389999999999999999875 34799999999775321
Q ss_pred c----cCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 108 H----FREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 108 l----~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
. ...||+|+...-. .+...+++.+.+.|+|||.+++.+...
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 1 2359999987532 256789999999999999888877543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=107.72 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=85.0
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
+...+...++.+|||+ |||+|..+..++. .+++|+++|+++++++.|++++ .+++++.+|+.+. + ..++
T Consensus 49 l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~-~-~~~~ 117 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDL-GCGTGQLTEKIAQ----SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNF-R-VDKP 117 (279)
T ss_dssp HHHHHCCCTTCEEEEE-TCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTC-C-CSSC
T ss_pred HHHHhCCCCCCEEEEe-cCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhC-C-cCCC
Confidence 3344455678899999 9999999999987 2689999999999999999875 4688999999874 4 3679
Q ss_pred ccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||+|+..... .+....++.+.+.|+|||.+++..
T Consensus 118 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 118 LDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999987643 466889999999999998887754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=111.72 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=82.2
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++++|||+ |||+|..++.++++ ...+|++||+++ +++.|+++++ +..++|+++.+|+.+. +...++||+
T Consensus 63 ~~~~~~~VLDv-GcG~G~~~~~la~~---g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~ 136 (349)
T 3q7e_A 63 HLFKDKVVLDV-GSGTGILCMFAAKA---GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDI 136 (349)
T ss_dssp HHHTTCEEEEE-SCTTSHHHHHHHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEE
T ss_pred ccCCCCEEEEE-eccchHHHHHHHHC---CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEE
Confidence 34577899999 99999999999876 256999999995 9999999997 6677899999999886 212579999
Q ss_pred EEEcC------CcCcHHHHHHHHHhcCCCCcEEE
Q 041509 115 VLIDC------NLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 115 VfiD~------~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
|+.+. .......+++.+.+.|+|||.++
T Consensus 137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 99864 22456788899999999988765
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=109.96 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=83.1
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+.......++++|||+ |||+|..++.+++. ...+|+++|.++ +++.|+++++ +..++|+++.+|+.+. +...
T Consensus 56 i~~~~~~~~~~~VLDi-GcGtG~ls~~la~~---g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~ 129 (340)
T 2fyt_A 56 IYQNPHIFKDKVVLDV-GCGTGILSMFAAKA---GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPV 129 (340)
T ss_dssp HHHCGGGTTTCEEEEE-TCTTSHHHHHHHHT---TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSC
T ss_pred HHhhhhhcCCCEEEEe-eccCcHHHHHHHHc---CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCC
Confidence 3333445678899999 99999999998875 246999999997 9999999987 5568999999999875 2114
Q ss_pred CCccEEEEcCC------cCcHHHHHHHHHhcCCCCcEEE
Q 041509 110 READFVLIDCN------LENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 110 ~~fD~VfiD~~------~~~y~~~l~~~~~~L~pgG~vi 142 (211)
++||+|+.+.- .......++.+.+.|+|||.++
T Consensus 130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 78999998751 1245678888899999988766
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=103.26 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=78.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHH----HHHhc-CCCCcEEEEEcchHHHhhhccCC
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS----KKILG-LDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~A----r~~~~-~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
...++.+|||+ |||+|..+..++...+ +++|++||+++++++.+ +++.. ....+++++++|+.+. +...+.
T Consensus 24 ~~~~~~~vLDi-GcG~G~~~~~la~~~p--~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~~ 99 (218)
T 3mq2_A 24 RSQYDDVVLDV-GTGDGKHPYKVARQNP--SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-PPLSGV 99 (218)
T ss_dssp HTTSSEEEEEE-SCTTCHHHHHHHHHCT--TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-CSCCCE
T ss_pred hccCCCEEEEe-cCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-CCCCCC
Confidence 45577889999 9999999999998753 68999999999987753 33333 2245899999999884 432344
Q ss_pred ccEEEEcCCc--------CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 112 ADFVLIDCNL--------ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 112 fD~VfiD~~~--------~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|.|++.... .+...+++.+.+.|+|||.+++..+
T Consensus 100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 877765422 1226889999999999998887543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-12 Score=99.56 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=80.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+.+++... .+++++|+++++++.|+++ ..+++++.+| ++...++||+|+
T Consensus 14 ~~~~~~~vLDi-G~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d----~~~~~~~~D~v~ 80 (170)
T 3i9f_A 14 FEGKKGVIVDY-GCGNGFYCKYLLEFA----TKLYCIDINVIALKEVKEK----FDSVITLSDP----KEIPDNSVDFIL 80 (170)
T ss_dssp HSSCCEEEEEE-TCTTCTTHHHHHTTE----EEEEEECSCHHHHHHHHHH----CTTSEEESSG----GGSCTTCEEEEE
T ss_pred CcCCCCeEEEE-CCCCCHHHHHHHhhc----CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC----CCCCCCceEEEE
Confidence 45677799999 999999999998753 4999999999999999998 3579999999 332357999999
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..... .+....++.+.+.|+|||.+++.+-
T Consensus 81 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 81 FANSFHDMDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp EESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 87543 3678899999999999998888763
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=105.09 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=77.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|++++. +++++++|+.+... .++||+|++..
T Consensus 50 ~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~--~~~fD~v~~~~ 118 (263)
T 3pfg_A 50 KAASLLDV-ACGTGMHLRHLADS----FGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSL--GRRFSAVTCMF 118 (263)
T ss_dssp TCCEEEEE-TCTTSHHHHHHTTT----SSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCC--SCCEEEEEECT
T ss_pred CCCcEEEe-CCcCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCc--cCCcCEEEEcC
Confidence 45899999 99999999988764 5689999999999999999854 68999999987532 68999999876
Q ss_pred C-c------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 N-L------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~-~------~~y~~~l~~~~~~L~pgG~viv 143 (211)
+ . .+....++.+.+.|+|||.+++
T Consensus 119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i 149 (263)
T 3pfg_A 119 SSIGHLAGQAELDAALERFAAHVLPDGVVVV 149 (263)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred chhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2 1 2456789999999999887776
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=107.37 Aligned_cols=105 Identities=22% Similarity=0.181 Sum_probs=87.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++.+|||+ |||+|..+..+++..+ +.+++.+|+ |++++.|++++. ++.++|+++.+|..+.++ ..||+|+
T Consensus 201 ~~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~v~ 273 (369)
T 3gwz_A 201 SGAATAVDI-GGGRGSLMAAVLDAFP--GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADVYL 273 (369)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSEEE
T ss_pred ccCcEEEEe-CCCccHHHHHHHHHCC--CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceEEE
Confidence 457899999 9999999999999864 679999999 999999999987 667899999999984333 3899999
Q ss_pred EcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 117 IDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 117 iD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+-.-. ....+.++.+.+.|+|||.+++.+.....
T Consensus 274 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 274 IKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred hhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 86432 23347999999999999999998876644
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=111.06 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=82.8
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
....++++|||+ |||+|..++.++++. ..+|++||.+ ++++.|+++++ ++.++|+++++|+.+... .++||
T Consensus 59 ~~~~~~~~VLDl-GcGtG~ls~~la~~g---~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D 131 (376)
T 3r0q_C 59 KHHFEGKTVLDV-GTGSGILAIWSAQAG---ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL--PEKVD 131 (376)
T ss_dssp TTTTTTCEEEEE-SCTTTHHHHHHHHTT---CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC--SSCEE
T ss_pred cccCCCCEEEEe-ccCcCHHHHHHHhcC---CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc--CCcce
Confidence 344677899999 999999999998762 3599999999 99999999997 667889999999987642 48999
Q ss_pred EEEEcCC------cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 114 FVLIDCN------LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 114 ~VfiD~~------~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+|+.+.- ......+++.+.+.|+|||.+++
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 9998751 13467788999999999887654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=111.50 Aligned_cols=104 Identities=17% Similarity=0.080 Sum_probs=83.4
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhh---ccCCc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLS---HFREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~---l~~~f 112 (211)
...+..+|||+ |||+|..++.||.. +++|+++|+++++++.|++|++ ....+++|+.+|+.+.++. ..++|
T Consensus 283 ~~~~~~~VLDl-gcG~G~~~~~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~f 357 (433)
T 1uwv_A 283 DVQPEDRVLDL-FCGMGNFTLPLATQ----AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 (433)
T ss_dssp TCCTTCEEEEE-SCTTTTTHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred cCCCCCEEEEC-CCCCCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCC
Confidence 34466899999 99999999999864 5799999999999999999998 3335899999999886543 24689
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+|++|.+.....+.++.+.+ ++|++.+++..|
T Consensus 358 D~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvsc~ 390 (433)
T 1uwv_A 358 DKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCN 390 (433)
T ss_dssp SEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESC
T ss_pred CEEEECCCCccHHHHHHHHHh-cCCCeEEEEECC
Confidence 999999887655566766664 678777777665
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=98.38 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
|.+..++.. +.. .++++|||+ |||+|..++.++.. . +|+++|+++++++. ..+++++++|+.+
T Consensus 8 ~~~~~l~~~-l~~~~~~~~~vLD~-GcG~G~~~~~l~~~----~-~v~gvD~s~~~~~~--------~~~~~~~~~d~~~ 72 (170)
T 3q87_B 8 EDTYTLMDA-LEREGLEMKIVLDL-GTSTGVITEQLRKR----N-TVVSTDLNIRALES--------HRGGNLVRADLLC 72 (170)
T ss_dssp HHHHHHHHH-HHHHTCCSCEEEEE-TCTTCHHHHHHTTT----S-EEEEEESCHHHHHT--------CSSSCEEECSTTT
T ss_pred ccHHHHHHH-HHhhcCCCCeEEEe-ccCccHHHHHHHhc----C-cEEEEECCHHHHhc--------ccCCeEEECChhh
Confidence 444444444 444 677899999 99999999988753 3 99999999999987 3568999999987
Q ss_pred HhhhccCCccEEEEcCCcC------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 104 LLLSHFREADFVLIDCNLE------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.++ .++||+|+.+.... ...+.++.+.+.+ |||.+++.....
T Consensus 73 ~~~--~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~ 126 (170)
T 3q87_B 73 SIN--QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA 126 (170)
T ss_dssp TBC--GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred hcc--cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence 543 47999999976432 2356677777777 999998876544
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=105.95 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=95.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
..++.....++..++...+..+|||+ |||+|..|+.||+.+.. .++|+++|+++++++.+++|++ ....+|+++++|
T Consensus 84 ~~~Qd~~s~l~~~~l~~~~g~~VLDl-caG~G~kt~~la~~~~~-~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D 161 (309)
T 2b9e_A 84 LILQDRASCLPAMLLDPPPGSHVIDA-CAAPGNKTSHLAALLKN-QGKIFAFDLDAKRLASMATLLARAGVSCCELAEED 161 (309)
T ss_dssp EEECCTGGGHHHHHHCCCTTCEEEES-SCTTCHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred EEEECHHHHHHHHHhCCCCCCEEEEe-CCChhHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34666666777777777788999999 69999999999988743 6999999999999999999998 223679999999
Q ss_pred hHHHhhhc--cCCccEEEEcCCcC--------------------c-------HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 101 AQSLLLSH--FREADFVLIDCNLE--------------------N-------HEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 101 a~e~l~~l--~~~fD~VfiD~~~~--------------------~-------y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+.+..+.. .++||.|++|++-. + +.+.++.+.++|+ ||.++.+...+.+
T Consensus 162 ~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 162 FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ 239 (309)
T ss_dssp GGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred hHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence 98865422 25799999995421 0 1235666666676 7887766665543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=110.68 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=89.9
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
.+++.......++.+|||+ |||+|..++++++..+ ..+|+++|+++.+++.|++++....-.++++.+|+.+..
T Consensus 185 ~~~ll~~l~~~~~~~VLDl-GcG~G~~~~~la~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--- 258 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDV-GCGAGVLSVAFARHSP--KIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--- 258 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBT-TCTTSHHHHHHHHHCT--TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC---
T ss_pred HHHHHHhcCcCCCCeEEEe-cCccCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc---
Confidence 3444444434456789999 9999999999998753 469999999999999999999721223677999987643
Q ss_pred cCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 109 FREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 109 ~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.++||+|+.+.... ....+++.+.+.|+|||.+++..|...
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 57999999986532 347789999999999999998887554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=103.64 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=77.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeC-ChhHHHHHHHHh-----c--CCC----CcEEEEEcch----H
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILR-RVEEYKLSKKIL-----G--LDA----SHVEFVIGDA----Q 102 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~-~~~~~~~Ar~~~-----~--~~~----~~V~~~~gda----~ 102 (211)
.++++|||+ |||+|+.++.++.. ..++|+++|+ ++++++.|++|+ + +.. ++++++..+. .
T Consensus 78 ~~~~~vLDl-G~G~G~~~~~~a~~---~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (281)
T 3bzb_A 78 IAGKTVCEL-GAGAGLVSIVAFLA---GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD 153 (281)
T ss_dssp TTTCEEEET-TCTTSHHHHHHHHT---TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH
T ss_pred cCCCeEEEe-cccccHHHHHHHHc---CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH
Confidence 567899999 99999999988864 1359999999 899999999999 4 322 4788885442 2
Q ss_pred HHhhh-ccCCccEEEE-cCC--cCcHHHHHHHHHhcCC---C--CcEEEEEec
Q 041509 103 SLLLS-HFREADFVLI-DCN--LENHEGVLRAVQAGNK---P--NGAVVVGYN 146 (211)
Q Consensus 103 e~l~~-l~~~fD~Vfi-D~~--~~~y~~~l~~~~~~L~---p--gG~viv~dn 146 (211)
+.... ..++||+|+. |.- ..++..+++.+.++|+ | ||.++++-.
T Consensus 154 ~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 154 SLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp HHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred HHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 23221 1578999987 542 3467889999999999 9 998776544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=107.25 Aligned_cols=103 Identities=13% Similarity=-0.021 Sum_probs=86.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++.+|||+ |||+|..+..+++..+ +.+++.+|+ |++++.|++++. ++.++|+++.+|..+.++ .+||+|++
T Consensus 169 ~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~v~~ 241 (332)
T 3i53_A 169 ALGHVVDV-GGGSGGLLSALLTAHE--DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGYVL 241 (332)
T ss_dssp GGSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSEEEE
T ss_pred CCCEEEEe-CCChhHHHHHHHHHCC--CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcEEEE
Confidence 36799999 9999999999999874 579999999 999999999987 567899999999974333 38999998
Q ss_pred cCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-.- .+...+.++.+.+.|+|||.+++.|....
T Consensus 242 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 242 SAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred ehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 542 22357899999999999999999886554
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=107.12 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=87.4
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.+|||+ |||+|..+..+++..+ +.+++.+|. |++++.|++++. +..++|+++.+|..+..+...+.||+|++-
T Consensus 180 ~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDL-AGGHGTYLAQVLRRHP--QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEE-TCTTCHHHHHHHHHCT--TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CCEEEEe-CCCcCHHHHHHHHhCC--CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence 7899999 9999999999998874 589999999 899999999987 556789999999987642135679999986
Q ss_pred CCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 119 CNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 119 ~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.-. ++....++.+.+.|+|||.+++.+....
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 432 2347899999999999999999886654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=107.59 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=82.8
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+.......++++|||+ |||+|..++.++++ ...+|+++|.+ ++++.|+++++ +..++|+++.+|+.+... ..
T Consensus 30 i~~~~~~~~~~~VLDi-GcGtG~ls~~la~~---g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 103 (328)
T 1g6q_1 30 IIQNKDLFKDKIVLDV-GCGTGILSMFAAKH---GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL-PF 103 (328)
T ss_dssp HHHHHHHHTTCEEEEE-TCTTSHHHHHHHHT---CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC-SS
T ss_pred HHhhHhhcCCCEEEEe-cCccHHHHHHHHHC---CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC-CC
Confidence 3333445677899999 99999999988875 24699999999 59999999987 667889999999987521 14
Q ss_pred CCccEEEEcCC------cCcHHHHHHHHHhcCCCCcEEE
Q 041509 110 READFVLIDCN------LENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 110 ~~fD~VfiD~~------~~~y~~~l~~~~~~L~pgG~vi 142 (211)
++||+|+.+.. .......++.+.+.|+|||.++
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 78999998742 2345778888889999988765
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=104.86 Aligned_cols=112 Identities=18% Similarity=0.086 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC-hhHHHHH---HHHhc-CCCCcEEEEEcchH
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR-VEEYKLS---KKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~-~~~~~~A---r~~~~-~~~~~V~~~~gda~ 102 (211)
..+++.... .++++|||| |||+|..++.|+... .+.+|++||++ +.+++.| +++.. ....+++++.+|+.
T Consensus 14 ~~~~~~~~~--~~~~~vLDi-GCG~G~~~~~la~~~--~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~ 88 (225)
T 3p2e_A 14 KDELTEIIG--QFDRVHIDL-GTGDGRNIYKLAIND--QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAE 88 (225)
T ss_dssp HHHHHHHHT--TCSEEEEEE-TCTTSHHHHHHHHTC--TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTT
T ss_pred HHHHHHHhC--CCCCEEEEE-eccCcHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHH
Confidence 344444332 466789999 999999999998653 37899999999 6666666 77766 22357999999998
Q ss_pred HHhhhccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 103 SLLLSHFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+......+.+|.|++..... .+.+.++++.++|+|||.++++
T Consensus 89 ~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 89 SLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp BCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 77322346788888764321 2457899999999999988773
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=107.96 Aligned_cols=101 Identities=8% Similarity=0.059 Sum_probs=82.2
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
....++++|||| |||+|..++.++++ ..++|++||.++ +++.|+++++ ++.++|+++.+|+.+.- +.++||
T Consensus 46 l~~~~~~~VLDi-GcGtG~ls~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~~D 118 (348)
T 2y1w_A 46 HTDFKDKIVLDV-GCGSGILSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--LPEQVD 118 (348)
T ss_dssp GGGTTTCEEEEE-TCTTSHHHHHHHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSCEE
T ss_pred cccCCcCEEEEc-CCCccHHHHHHHhC---CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--CCCcee
Confidence 345678899999 99999999988874 246999999996 8899999987 66689999999998752 347899
Q ss_pred EEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 114 FVLIDCN-----LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 114 ~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+|+.+.. .+.+.+.+..+.+.|+|||.+++
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 9998753 23567788888999999887763
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.6e-12 Score=111.23 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=79.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+.++|||| |||+|..++++|++- ..+|++||.++ +++.|+++++ ++.++|+++.+|+.++- +.+++|+|
T Consensus 81 ~~~~k~VLDv-G~GtGiLs~~Aa~aG---A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--lpe~~Dvi 153 (376)
T 4hc4_A 81 ALRGKTVLDV-GAGTGILSIFCAQAG---ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--LPEQVDAI 153 (376)
T ss_dssp HHTTCEEEEE-TCTTSHHHHHHHHTT---CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSCEEEE
T ss_pred hcCCCEEEEe-CCCccHHHHHHHHhC---CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--CCccccEE
Confidence 3577899999 999999998888752 46899999996 8899999998 77899999999998862 46899999
Q ss_pred EEcC------CcCcHHHHHHHHHhcCCCCcEEE
Q 041509 116 LIDC------NLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 116 fiD~------~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
+... .......++....++|+|||.++
T Consensus 154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred EeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 9742 12245777888888999977543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-12 Score=101.76 Aligned_cols=101 Identities=15% Similarity=0.046 Sum_probs=81.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|..+..++... ..+|+++|+++.+++.|++++.. ..+++++.+|+.+. +...++||+|+..
T Consensus 41 ~~~~~vLdi-GcG~G~~~~~l~~~~---~~~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~~~~-~~~~~~fD~v~~~ 114 (215)
T 2pxx_A 41 RPEDRILVL-GCGNSALSYELFLGG---FPNVTSVDYSSVVVAAMQACYAH-VPQLRWETMDVRKL-DFPSASFDVVLEK 114 (215)
T ss_dssp CTTCCEEEE-TCTTCSHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTTT-CTTCEEEECCTTSC-CSCSSCEEEEEEE
T ss_pred CCCCeEEEE-CCCCcHHHHHHHHcC---CCcEEEEeCCHHHHHHHHHhccc-CCCcEEEEcchhcC-CCCCCcccEEEEC
Confidence 456789999 999999999998752 23899999999999999999874 35799999999875 3225789999975
Q ss_pred CCc------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNL------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... .+....++.+.+.|+|||.+++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 321 245788999999999999888866
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=94.64 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhcC--------CcCCChhHHHHHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC
Q 041509 8 NATKAYLKTLKMG--------QKAKEPNEAEFISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR 76 (211)
Q Consensus 8 ~~~~ay~~~~~~~--------~~~~~~~~~~lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~ 76 (211)
.....|+..+... +....+..++.+..++. ..++++|||+ |||+|..++.++.. ...+|+++|++
T Consensus 8 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~-gcG~G~~~~~l~~~---~~~~v~~vD~~ 83 (200)
T 1ne2_A 8 NDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDA-GTGNGILACGSYLL---GAESVTAFDID 83 (200)
T ss_dssp HHHHHHHHTSCCCC--------CCCCHHHHHHHHHHHHHHTSSBTSEEEEE-TCTTCHHHHHHHHT---TBSEEEEEESC
T ss_pred HHHHHHHHhcCCCCccccceeecCCCHHHHHHHHHHHHhcCCCCCCEEEEE-eCCccHHHHHHHHc---CCCEEEEEECC
Confidence 3455666654321 12344555554444443 3467899999 99999999999875 24689999999
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 77 VEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 77 ~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++++.|++++. +++++++|+.+. .++||+|++|.... ...++++.+.+.+ |.++++.+
T Consensus 84 ~~~~~~a~~~~~----~~~~~~~d~~~~----~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~ 147 (200)
T 1ne2_A 84 PDAIETAKRNCG----GVNFMVADVSEI----SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGN 147 (200)
T ss_dssp HHHHHHHHHHCT----TSEEEECCGGGC----CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEE
T ss_pred HHHHHHHHHhcC----CCEEEECcHHHC----CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEc
Confidence 999999999976 789999999874 37899999997632 2356788888876 44555554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.1e-12 Score=102.11 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=78.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+..+|||+ |||+|..+..++.. .+++++|+++++++.|++++.....+++++.+|+.+.. ..++||+|++..
T Consensus 33 ~~~~vLdi-G~G~G~~~~~l~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~ 104 (243)
T 3d2l_A 33 PGKRIADI-GCGTGTATLLLADH-----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE--LPEPVDAITILC 104 (243)
T ss_dssp TTCEEEEE-SCTTCHHHHHHTTT-----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC--CSSCEEEEEECT
T ss_pred CCCeEEEe-cCCCCHHHHHHhhC-----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC--CCCCcCEEEEeC
Confidence 45789999 99999998888753 69999999999999999998722357999999998752 247899999865
Q ss_pred C-------cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 N-------LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~-------~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+ ..+....++.+.+.|+|||.+++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 105 DSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp TGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2 13457789999999999887766
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=95.40 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=83.8
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
.+++..+ ..++.+|||+ |||+|..+..++.. +.+++++|+++++++.|++++. +++++.+|+.+. +..
T Consensus 37 ~~~l~~~--~~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~-~~~ 104 (195)
T 3cgg_A 37 ARLIDAM--APRGAKILDA-GCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVD-QIS 104 (195)
T ss_dssp HHHHHHH--SCTTCEEEEE-TCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTS-CCC
T ss_pred HHHHHHh--ccCCCeEEEE-CCCCCHHHHHHHHC----CCcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccC-CCC
Confidence 4566665 3467899999 99999999998875 5699999999999999999864 488999999874 212
Q ss_pred cCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||+|++.+.. ++....++.+.+.|+|||.+++..
T Consensus 105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 5789999997432 234788999999999988887754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=111.07 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=75.8
Q ss_pred CCCeEEEEcccc------HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhh---c
Q 041509 40 NAQLMVVACANV------ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLS---H 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg------~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~---l 108 (211)
++.+|||| ||| +|..++.+++... ++++|++||+++++. . ...+|+|++||+.+. +.. .
T Consensus 216 ~~~rVLDI-GCG~~~~~~TGG~Sl~la~~~f-P~a~V~GVDiSp~m~------~--~~~rI~fv~GDa~dlpf~~~l~~~ 285 (419)
T 3sso_A 216 QQVRVLEI-GVGGYKHPEWGGGSLRMWKSFF-PRGQIYGLDIMDKSH------V--DELRIRTIQGDQNDAEFLDRIARR 285 (419)
T ss_dssp SCCEEEEE-CCSCTTCSSCCCHHHHHHHHHC-TTCEEEEEESSCCGG------G--CBTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEE-ecCCCcCCCCCHHHHHHHHHhC-CCCEEEEEECCHHHh------h--cCCCcEEEEecccccchhhhhhcc
Confidence 67899999 999 7777888887653 378999999999972 1 246899999999764 211 1
Q ss_pred cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 109 FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 109 ~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.++||+|+.|+.+. ++...++++.+.|+|||.+++ +++.
T Consensus 286 d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi-~Dl~ 326 (419)
T 3sso_A 286 YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVI-EDMW 326 (419)
T ss_dssp HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEE-ECGG
T ss_pred cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEE-Eecc
Confidence 58999999997653 568899999999999876666 4443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=92.42 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred CCChhHHHHHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 23 AKEPNEAEFISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
...+..++.+...+. ..++++|||+ |||+|..++.++.. ...+|+++|+++.+++.|+++++ +. +++++
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~-g~G~G~~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~ 102 (207)
T 1wy7_A 29 RTPGNAASELLWLAYSLGDIEGKVVADL-GAGTGVLSYGALLL---GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVF 102 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEE-TCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEE
T ss_pred cCchHHHHHHHHHHHHcCCCCcCEEEEe-eCCCCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEE
Confidence 455556655554443 3467899999 99999999999875 14589999999999999999998 43 79999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++|+.+. .++||+|++|.+. .....+++.+.+.+ |+ +++..
T Consensus 103 ~~d~~~~----~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~ 148 (207)
T 1wy7_A 103 IGDVSEF----NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DV-VYSIH 148 (207)
T ss_dssp ESCGGGC----CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred ECchHHc----CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--Cc-EEEEE
Confidence 9999874 3589999999752 24467888888877 44 44433
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=103.95 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=86.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++.+|||+ |||+|..+..+++..+ +.+++++|++ .+++.|++++. +..++|+++.+|+.+. + ..+.||+|+
T Consensus 164 ~~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDI-SASHGLFGIAVAQHNP--NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-D-YGNDYDLVL 237 (335)
T ss_dssp CCCSEEEEE-TCTTCHHHHHHHHHCT--TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-C-CCSCEEEEE
T ss_pred CCCCEEEEE-CCCcCHHHHHHHHHCC--CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-C-CCCCCcEEE
Confidence 567899999 9999999999998874 5799999999 99999999987 6667899999999764 2 244599999
Q ss_pred EcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.... ++..+.++.+.+.|+|||.+++.+....
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 85422 3457899999999999998888876543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=101.73 Aligned_cols=104 Identities=12% Similarity=-0.034 Sum_probs=86.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..+++..+ +.+++++|+ |++++.|+++++ +..++|+++.+|+.+. + ...+|+|
T Consensus 188 ~~~~~~vLDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~D~v 260 (359)
T 1x19_A 188 LDGVKKMIDV-GGGIGDISAAMLKHFP--ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--YPEADAV 260 (359)
T ss_dssp CTTCCEEEEE-SCTTCHHHHHHHHHCT--TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--CCCCSEE
T ss_pred CCCCCEEEEE-CCcccHHHHHHHHHCC--CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--CCCCCEE
Confidence 4567899999 9999999999999864 679999999 999999999987 5667899999999865 2 2344999
Q ss_pred EEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 116 LIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 116 fiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++..-.. ...+.++.+.+.|+|||.+++.+...
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred EEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 9865332 35778999999999999998888554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=106.83 Aligned_cols=102 Identities=19% Similarity=0.100 Sum_probs=85.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..+++..+ +.+++++|+ +++++.|++++. ++.++|+++.+|+.+.++ ..||+|
T Consensus 180 ~~~~~~vlDv-G~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v 252 (374)
T 1qzz_A 180 WSAVRHVLDV-GGGNGGMLAAIALRAP--HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVV 252 (374)
T ss_dssp CTTCCEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEE
T ss_pred CCCCCEEEEE-CCCcCHHHHHHHHHCC--CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC---CCCCEE
Confidence 3467899999 9999999999998874 579999999 999999999987 566789999999976433 359999
Q ss_pred EEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++..-.. .....++.+.+.|+|||.+++.+.
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9865332 235789999999999998888876
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=99.90 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++.+|||+ |||+|..+..+ . ..+++++|+++++++.|++++ .+++++.+|+.+. +...++||+|++..
T Consensus 36 ~~~~vLdi-G~G~G~~~~~l----~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEV-GAGTGYWLRRL----P--YPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEAL-PFPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEE-TCTTCHHHHHC----C--CSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSC-CSCSSCEEEEEEES
T ss_pred CCCeEEEE-CCCCCHhHHhC----C--CCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccC-CCCCCcEEEEEEcC
Confidence 67899999 99999987766 1 239999999999999999986 5688999998764 32257899999876
Q ss_pred Cc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 120 NL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 120 ~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.. .+..+.++.+.+.|+|||.+++.+
T Consensus 104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 104 TLEFVEDVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp CTTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 43 367889999999999999888765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8e-12 Score=103.41 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=80.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC---------------------------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA--------------------------- 91 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~--------------------------- 91 (211)
.++++|||+ |||+|..+..++... ..+|+++|+++.+++.|++++....
T Consensus 55 ~~~~~vLDl-GcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 55 VKGELLIDI-GSGPTIYQLLSACES---FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp CCEEEEEEE-SCTTCCGGGTTGGGT---EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cCCCEEEEE-CCCccHHHHHHhhcc---cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 456789999 999999888877542 2489999999999999999887211
Q ss_pred ---CcE-EEEEcchHHHhhhcc---CCccEEEEcCCcC-------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 92 ---SHV-EFVIGDAQSLLLSHF---READFVLIDCNLE-------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 92 ---~~V-~~~~gda~e~l~~l~---~~fD~VfiD~~~~-------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++ +++.+|+.+..+... ++||+|+...... ++...++.+.++|+|||.+++.+
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 138 999999987643223 7899999865432 57889999999999998888765
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=103.27 Aligned_cols=101 Identities=20% Similarity=0.162 Sum_probs=85.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+|||+ |||+|..+..+++..+ +.+++++|+ |++++.|++++. +..++|+++.+|..+. +.++||+|++..
T Consensus 169 ~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDV-GGGSGELTKAILQAEP--SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNGDIYLLSR 241 (334)
T ss_dssp CEEEEE-TCTTCHHHHHHHHHCT--TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSCSEEEEES
T ss_pred CEEEEe-CCCchHHHHHHHHHCC--CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCCCEEEEch
Confidence 899999 9999999999998874 579999999 999999999987 5567899999999873 246799999865
Q ss_pred CcC-----cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-.. .....++.+.+.|+|||.+++.|....
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 432 335889999999999999999886654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=94.15 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh-----
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL----- 105 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l----- 105 (211)
++..+....++.+|||+ |||+|..+.++++..++ +.+++++|.++ +.+. .+++++.+|+.+.-
T Consensus 13 ~~~~~~~~~~~~~vLd~-G~G~G~~~~~l~~~~~~-~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~ 80 (180)
T 1ej0_A 13 IQQSDKLFKPGMTVVDL-GAAPGGWSQYVVTQIGG-KGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKAL 80 (180)
T ss_dssp HHHHHCCCCTTCEEEEE-SCTTCHHHHHHHHHHCT-TCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHH
T ss_pred HHHHhCCCCCCCeEEEe-CCCCCHHHHHHHHHhCC-CCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhh
Confidence 33333334567899999 99999999999988643 58999999999 6432 57999999997652
Q ss_pred hh-c-cCCccEEEEcCCcC---cH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 106 LS-H-FREADFVLIDCNLE---NH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 106 ~~-l-~~~fD~VfiD~~~~---~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
+. + .++||+|+.+.... .. ...++.+.+.|+|||.+++..
T Consensus 81 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 81 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 11 1 46899999986432 22 578999999999988887754
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-10 Score=97.51 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=81.8
Q ss_pred CCCCeEEEEccccH---HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh---------h
Q 041509 39 NNAQLMVVACANVA---NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL---------L 106 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~---G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l---------~ 106 (211)
....+|||| |||+ |..+..+++.. ++++|+++|.+|.+++.|++++.. ..+++++.+|+.+.- .
T Consensus 76 ~~~~~vLDl-GcG~pt~G~~~~~~~~~~--p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 76 AGISQFLDL-GSGLPTVQNTHEVAQSVN--PDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp TCCCEEEEE-TCCSCCSSCHHHHHHHHC--TTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred cCCCEEEEE-CCCCCCCChHHHHHHHhC--CCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhc
Confidence 345799999 9999 98766555544 268999999999999999999863 367999999986531 1
Q ss_pred hc-cCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 107 SH-FREADFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l-~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.+ .++||+|++..- ..+....++.+.+.|+|||.+++.+..
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred cCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 12 258999998752 224788999999999999999887754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=104.98 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=85.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||+|..+..+++..+ +.+++.+|+ +++++.|++++. +..++|+++.+|+.+.++ ..||+|
T Consensus 181 ~~~~~~vLDv-G~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v 253 (360)
T 1tw3_A 181 WTNVRHVLDV-GGGKGGFAAAIARRAP--HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAI 253 (360)
T ss_dssp CTTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEE
T ss_pred CccCcEEEEe-CCcCcHHHHHHHHhCC--CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC---CCccEE
Confidence 3467899999 9999999999998864 579999999 999999999987 566789999999976433 359999
Q ss_pred EEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 116 LIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 116 fiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
++..-.. +..+.++.+.+.|+|||.+++.+..
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9865432 2357899999999999989888866
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=98.28 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=77.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|..+..++... .+++++|+++++++.|++++ .+++++.+|+.+. + ..++||+|+..
T Consensus 39 ~~~~~vLdi-G~G~G~~~~~l~~~~----~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~-~-~~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDV-ACGTGTHLEHFTKEF----GDTAGLELSEDMLTHARKRL----PDATLHQGDMRDF-R-LGRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEE-TCTTSHHHHHHHHHH----SEEEEEESCHHHHHHHHHHC----TTCEEEECCTTTC-C-CSSCEEEEEEC
T ss_pred CCCCeEEEe-cccCCHHHHHHHHhC----CcEEEEeCCHHHHHHHHHhC----CCCEEEECCHHHc-c-cCCCCcEEEEc
Confidence 467899999 999999999998874 38999999999999999885 3589999999875 3 26789999943
Q ss_pred CC-------cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 119 CN-------LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 119 ~~-------~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.. ..+....++.+.+.|+|||.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 31 134578899999999998877763
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=99.82 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++.+|||+ |||+|..+..++.. +.+|+++|+++++++.|+++... + ++.+|+.+. +...++||+|++..
T Consensus 54 ~~~~vLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~---~--~~~~d~~~~-~~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDL-GGGTGKWSLFLQER----GFEVVLVDPSKEMLEVAREKGVK---N--VVEAKAEDL-PFPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEE-TCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHHTCS---C--EEECCTTSC-CSCTTCEEEEEECS
T ss_pred CCCeEEEe-CCCcCHHHHHHHHc----CCeEEEEeCCHHHHHHHHhhcCC---C--EEECcHHHC-CCCCCCEEEEEEcc
Confidence 67899999 99999999988864 57999999999999999988652 2 889998764 32257899999865
Q ss_pred Cc----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 120 NL----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 120 ~~----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.. .+....++.+.+.|+|||.+++..
T Consensus 123 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 123 DVLSYVENKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp SHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence 32 346889999999999988877643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=99.99 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=80.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C------CCCcEEEEEcchHHHh-----h
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L------DASHVEFVIGDAQSLL-----L 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~------~~~~V~~~~gda~e~l-----~ 106 (211)
++.+|||+ |||+|..+..++.. ...+++++|+++++++.|++++. + ...+++++++|+.+.. +
T Consensus 34 ~~~~VLDl-GcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 109 (313)
T 3bgv_A 34 RDITVLDL-GCGKGGDLLKWKKG---RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR 109 (313)
T ss_dssp -CCEEEEE-TCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS
T ss_pred CCCEEEEE-CCCCcHHHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc
Confidence 67899999 99999999988863 26799999999999999999886 1 3458999999998752 1
Q ss_pred hccCCccEEEEcCCc-------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 107 SHFREADFVLIDCNL-------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~-------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
...++||+|+..... .+....++.+.+.|+|||.+++..
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 113589999987543 234689999999999988877654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=109.91 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=79.7
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++++|||| |||+|..++.+++. ...+|+++|+++ +++.|+++++ ++.++|+++.+|+.+. + +.++||+|
T Consensus 156 ~~~~~~VLDi-GcGtG~la~~la~~---~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-~~~~fD~I 228 (480)
T 3b3j_A 156 DFKDKIVLDV-GCGSGILSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-LPEQVDII 228 (480)
T ss_dssp GTTTCEEEEE-SCSTTHHHHHHHHT---TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-CSSCEEEE
T ss_pred hcCCCEEEEe-cCcccHHHHHHHHc---CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-c-cCCCeEEE
Confidence 3467899999 99999999988863 257999999998 9999999987 6668999999999874 2 34689999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+.+.. .+.+.+.+..+.+.|+|||.+++
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 98754 13446667777889999887763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-11 Score=96.11 Aligned_cols=113 Identities=11% Similarity=-0.041 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchH
Q 041509 26 PNEAEFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQ 102 (211)
Q Consensus 26 ~~~~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~ 102 (211)
|.--+|....... .++.+|||+ |||+|..++.++...+ +.+++++|+|+.|++.|+++++ +...++++ .|..
T Consensus 34 p~ld~fY~~~~~~l~~~~~VLDl-GCG~GplAl~l~~~~p--~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIKHVSSILDF-GCGFNPLALYQWNENE--KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHSCCCSEEEEE-TCTTHHHHHHHHCSSC--CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCH
T ss_pred HhHHHHHHHHHhhcCCCCeEEEe-cCCCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccc
Confidence 5555555554332 568999999 9999999999887654 4699999999999999999998 55557877 6665
Q ss_pred HHhhhccCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+..+ .++||+|++---.. +-...+..+.+.|+|||.+|-++
T Consensus 109 ~~~~--~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 109 SDVY--KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHT--TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred ccCC--CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 5433 57899998643221 11223446778899988777666
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=98.71 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=77.2
Q ss_pred cCCcC-CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEE
Q 041509 19 MGQKA-KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVE 95 (211)
Q Consensus 19 ~~~~~-~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~ 95 (211)
.++.. ..+...+.+...+...++.+|||| |||+|..|..|+.. +++|++||+|+.+++.|++++. +..++++
T Consensus 6 ~gq~fl~d~~i~~~i~~~~~~~~~~~VLDi-G~G~G~lt~~L~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 80 (285)
T 1zq9_A 6 IGQHILKNPLIINSIIDKAALRPTDVVLEV-GPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGTPVASKLQ 80 (285)
T ss_dssp --CCEECCHHHHHHHHHHTCCCTTCEEEEE-CCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTSTTGGGEE
T ss_pred CCcCccCCHHHHHHHHHhcCCCCCCEEEEE-cCcccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 34544 477777777777777778899999 99999999999986 4699999999999999999987 3346899
Q ss_pred EEEcchHHHhhhccCCccEEEEcCCcC
Q 041509 96 FVIGDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 96 ~~~gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
++++|+.+. + ...||.|+.+....
T Consensus 81 ~~~~D~~~~-~--~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 81 VLVGDVLKT-D--LPFFDTCVANLPYQ 104 (285)
T ss_dssp EEESCTTTS-C--CCCCSEEEEECCGG
T ss_pred EEEcceecc-c--chhhcEEEEecCcc
Confidence 999999875 2 24799999876543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-11 Score=100.35 Aligned_cols=106 Identities=9% Similarity=0.103 Sum_probs=77.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHcc--CCCcEE--EEEeCChhHHHHHHHHhc--CCCCcE--EEEEcchHHHhh----
Q 041509 39 NNAQLMVVACANVANATTLALAAAAH--QTGGRV--VCILRRVEEYKLSKKILG--LDASHV--EFVIGDAQSLLL---- 106 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~--~~~g~v--~tiE~~~~~~~~Ar~~~~--~~~~~V--~~~~gda~e~l~---- 106 (211)
.++.+|||| |||+|..|..++..+. .++.+| +++|++++|++.|+++++ ....++ ++..+++.+...
T Consensus 51 ~~~~~VLDi-G~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSI-GGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEE-TCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEE-cCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 345689999 9999988765543321 124554 999999999999999986 223444 456777776542
Q ss_pred -hccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 107 -SHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 107 -~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+++||+|+.-.. ..+....++.+.++|+|||.+++..
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 12578999998753 3467889999999999999888764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=111.21 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=86.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C-----CCCcEEEEEcchH
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L-----DASHVEFVIGDAQ 102 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~-----~~~~V~~~~gda~ 102 (211)
+++..++...++.+|||+ |||+|+.+..|++..+ +..+|++||+++++++.|+++++ . ...+|+|++||+.
T Consensus 711 e~LLelL~~~~g~rVLDV-GCGTG~lai~LAr~g~-p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~ 788 (950)
T 3htx_A 711 EYALKHIRESSASTLVDF-GCGSGSLLDSLLDYPT-SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL 788 (950)
T ss_dssp HHHHHHHHHSCCSEEEEE-TCSSSHHHHHHTSSCC-CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred HHHHHHhcccCCCEEEEE-CCCCCHHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence 344455566688999999 9999999999987642 24799999999999999999664 1 1358999999998
Q ss_pred HHhhhccCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~d 145 (211)
+... ..++||+|++..-... ...+++.+.+.|+|| .+++..
T Consensus 789 dLp~-~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 789 EFDS-RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp SCCT-TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred hCCc-ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 8533 3689999998765442 345889999999996 666543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-11 Score=100.43 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=74.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-------------------C---------
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-------------------A--------- 91 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-------------------~--------- 91 (211)
++.+|||+ |||+|..++.++. . .+.+|+++|+++++++.|+++++.. .
T Consensus 71 ~~~~vLDi-GcG~G~~~~l~~~-~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 146 (289)
T 2g72_A 71 SGRTLIDI-GSGPTVYQLLSAC-S--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 146 (289)
T ss_dssp CCSEEEEE-TCTTCCGGGTTGG-G--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCeEEEE-CCCcChHHHHhhc-c--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence 67899999 9999994443332 1 2579999999999999999876410 0
Q ss_pred ---CcEEEEEcchHHHhhh----c-cCCccEEEEcCCc-------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 92 ---SHVEFVIGDAQSLLLS----H-FREADFVLIDCNL-------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 92 ---~~V~~~~gda~e~l~~----l-~~~fD~VfiD~~~-------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..++++.+|+.+.++. + .++||+|+..... .++...++.+.++|+|||.+++.+
T Consensus 147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0267788898774331 1 3569999987532 257889999999999999888764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=99.44 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=73.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC-----cEEEEEcch------HHHhh
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS-----HVEFVIGDA------QSLLL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~-----~V~~~~gda------~e~l~ 106 (211)
++.+|||+ |||+|..+..++.. ..++|++||++++|++.|++... +... ++++.++|+ .++..
T Consensus 48 ~~~~VLDl-GCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~ 123 (302)
T 2vdw_A 48 NKRKVLAI-DFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE 123 (302)
T ss_dssp SCCEEEET-TCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred CCCeEEEE-ecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc
Confidence 35789999 99999644434332 25799999999999999999876 3211 377888877 33221
Q ss_pred h-ccCCccEEEEcCC------cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 107 S-HFREADFVLIDCN------LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 107 ~-l~~~fD~VfiD~~------~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. ..++||+|+.-.. .++....++.+.++|+|||.+++..
T Consensus 124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 1 2579999986432 1355789999999999988877644
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=101.99 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-------hHHHHHHHHhc--CCCCcEEEEEc
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-------EEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-------~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
.+++...+...+..+|||+ |||+|..|+++|.. +++|+++|+++ ++++.|++|.+ +..++|+++++
T Consensus 72 ~~~l~~a~~~~~~~~VLDl-gcG~G~~a~~lA~~----g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~ 146 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDA-TAGLGRDSFVLASL----GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG 146 (258)
T ss_dssp -CHHHHHTTGGGCCCEEET-TCTTCHHHHHHHHT----TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES
T ss_pred hHHHHHHhCcCCcCeEEEe-eCccCHHHHHHHHh----CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC
Confidence 3455555555556889999 89999999999973 57999999999 99999999887 44567999999
Q ss_pred chHHHhhhcc---CCccEEEEcCC
Q 041509 100 DAQSLLLSHF---READFVLIDCN 120 (211)
Q Consensus 100 da~e~l~~l~---~~fD~VfiD~~ 120 (211)
|+.+.++.+. ++||+|++|..
T Consensus 147 d~~~~l~~~~~~~~~fD~V~~dP~ 170 (258)
T 2r6z_A 147 NAAEQMPALVKTQGKPDIVYLDPM 170 (258)
T ss_dssp CHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CHHHHHHhhhccCCCccEEEECCC
Confidence 9999876543 79999999963
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-11 Score=100.65 Aligned_cols=103 Identities=15% Similarity=0.017 Sum_probs=75.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC----------------------------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD---------------------------- 90 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~---------------------------- 90 (211)
.++++|||| |||+|..++.++.. ...+|+++|+++.|++.|+++++..
T Consensus 54 ~~g~~vLDi-GCG~G~~~~~~~~~---~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 54 LQGDTLIDI-GSGPTIYQVLAACD---SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp CCEEEEEES-SCTTCCGGGTTGGG---TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCceEEEe-CCCccHHHHHHHHh---hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 456789999 99999765554422 1357999999999999999987511
Q ss_pred --CCcEE-EEEcchHHHhhh---ccCCccEEEEcCC-------cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 91 --ASHVE-FVIGDAQSLLLS---HFREADFVLIDCN-------LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 91 --~~~V~-~~~gda~e~l~~---l~~~fD~VfiD~~-------~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+|+ ++.+|..+..+. ..++||+|+.-.- .+++...++.+.++|+|||.+++.+
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 11354 899998874331 1468999998632 2456788999999999999888764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=97.58 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=77.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|..+..++...+ +.+|+++|+++++++.|+++. .+++++.+|+.+. +...++||+|+..
T Consensus 84 ~~~~~vLdi-G~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~-~~~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDI-GCGEGYYTHAFADALP--EITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL-PFSDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEE-TCTTSTTHHHHHHTCT--TSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC-SBCTTCEEEEEEE
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhC-CCCCCceeEEEEe
Confidence 467899999 9999999999998763 679999999999999999874 4578999998764 3225789999976
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.... .++.+.+.|+|||.+++...
T Consensus 156 ~~~~----~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 156 YAPC----KAEELARVVKPGGWVITATP 179 (269)
T ss_dssp SCCC----CHHHHHHHEEEEEEEEEEEE
T ss_pred CChh----hHHHHHHhcCCCcEEEEEEc
Confidence 5433 46778888999998888764
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=100.06 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=85.6
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C-C-CCcEEEEEcchHHHhhhcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L-D-ASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~-~-~~~V~~~~gda~e~l~~l~ 109 (211)
+...+|++||-| |.|.|..+-.+++.. +..+|+.||+||+.++.|++++. + + ..+++++.+|+.+.+....
T Consensus 79 ~~~p~pk~VLIi-GgGdG~~~revlk~~--~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~ 155 (294)
T 3o4f_A 79 LAHGHAKHVLII-GGGDGAMLREVTRHK--NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTS 155 (294)
T ss_dssp HHSSCCCEEEEE-SCTTSHHHHHHHTCT--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSS
T ss_pred hhCCCCCeEEEE-CCCchHHHHHHHHcC--CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhcc
Confidence 344679999999 999998877776542 35799999999999999999984 2 2 5789999999999987667
Q ss_pred CCccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 110 READFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 110 ~~fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
++||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 8999999997432 22 6899999999999776554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-10 Score=97.24 Aligned_cols=95 Identities=18% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE
Q 041509 20 GQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~ 98 (211)
+|. .+++...+.+...+...+.++|||| |||+|+.|..|++. +++|++||+|+++++.|++++.. .+++++++
T Consensus 29 GQnfL~d~~i~~~Iv~~l~~~~~~~VLEI-G~G~G~lT~~La~~----~~~V~aVEid~~li~~a~~~~~~-~~~v~vi~ 102 (295)
T 3gru_A 29 GQCFLIDKNFVNKAVESANLTKDDVVLEI-GLGKGILTEELAKN----AKKVYVIEIDKSLEPYANKLKEL-YNNIEIIW 102 (295)
T ss_dssp -CCEECCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHH----SSEEEEEESCGGGHHHHHHHHHH-CSSEEEEE
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEE-CCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHhcc-CCCeEEEE
Confidence 443 4677777777777777788899999 99999999999986 57999999999999999999873 35799999
Q ss_pred cchHHHhhhccCCccEEEEcCCc
Q 041509 99 GDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
||+.+.-.. ..+||.|+.+.+-
T Consensus 103 gD~l~~~~~-~~~fD~Iv~NlPy 124 (295)
T 3gru_A 103 GDALKVDLN-KLDFNKVVANLPY 124 (295)
T ss_dssp SCTTTSCGG-GSCCSEEEEECCG
T ss_pred CchhhCCcc-cCCccEEEEeCcc
Confidence 999875321 4579999977653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=99.79 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=72.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE-EcchHHHhh-hcc-CCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV-IGDAQSLLL-SHF-READFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~-~gda~e~l~-~l~-~~fD~Vf 116 (211)
++++|||+ |||||++|.+|++. ..++|++||++++|++.+.++ ..++... ..++...-. .+. .+||+|+
T Consensus 85 ~g~~vLDi-GcGTG~~t~~L~~~---ga~~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~~~l~~~~fD~v~ 156 (291)
T 3hp7_A 85 EDMITIDI-GASTGGFTDVMLQN---GAKLVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEPVDFTEGLPSFAS 156 (291)
T ss_dssp TTCEEEEE-TCTTSHHHHHHHHT---TCSEEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCGGGCTTCCCSEEE
T ss_pred cccEEEec-CCCccHHHHHHHhC---CCCEEEEEECCHHHHHHHHHh----CcccceecccCceecchhhCCCCCCCEEE
Confidence 46799999 99999999998864 257999999999999886543 1233332 223332211 122 3499999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|.........+.++.++|+|||.+++.
T Consensus 157 ~d~sf~sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 157 IDVSFISLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp ECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred EEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence 9988777788999999999999998876
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=99.77 Aligned_cols=118 Identities=10% Similarity=-0.035 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHccCC---CcEEEEEeCChhHHHHHHHHhc--CCCCc
Q 041509 23 AKEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAHQT---GGRVVCILRRVEEYKLSKKILG--LDASH 93 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~~~---~g~v~tiE~~~~~~~~Ar~~~~--~~~~~ 93 (211)
..++....++..++. ..++.+|||+ |||+|..++.++..++.. ..+++++|+++.+++.|+.|+. +. +
T Consensus 109 ~TP~~i~~~~~~ll~~l~~~~~~~~VlDp-~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~ 185 (344)
T 2f8l_A 109 MTPDSIGFIVAYLLEKVIQKKKNVSILDP-ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--K 185 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSEEEEEET-TCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--C
T ss_pred CChHHHHHHHHHHHHHhcCCCCCCEEEeC-CCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--C
Confidence 344455566555542 3355789999 899999999999887531 2789999999999999999987 54 6
Q ss_pred EEEEEcchHHHhhhccCCccEEEEcCCcCc--------------------H-HHHHHHHHhcCCCCcEEEEEe
Q 041509 94 VEFVIGDAQSLLLSHFREADFVLIDCNLEN--------------------H-EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 94 V~~~~gda~e~l~~l~~~fD~VfiD~~~~~--------------------y-~~~l~~~~~~L~pgG~viv~d 145 (211)
++++++|+.+..+ .++||+|+.+.+... + ..+++.+.+.|+|||.+++..
T Consensus 186 ~~i~~~D~l~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 186 MTLLHQDGLANLL--VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CEEEESCTTSCCC--CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEECCCCCccc--cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999876432 578999999976211 1 358999999999998876654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=98.08 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=72.5
Q ss_pred CCcC-CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEE
Q 041509 20 GQKA-KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFV 97 (211)
Q Consensus 20 ~~~~-~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~ 97 (211)
++.. .++...+.+...+...++++|||+ |||+|..|..|+.. +++|++||+++.+++.|++++. ...++++++
T Consensus 21 Gq~fl~~~~i~~~i~~~~~~~~~~~VLDi-G~G~G~lt~~La~~----~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~ 95 (299)
T 2h1r_A 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEI-GCGTGNLTVKLLPL----AKKVITIDIDSRMISEVKKRCLYEGYNNLEVY 95 (299)
T ss_dssp --CEECCHHHHHHHHHHHCCCTTCEEEEE-CCTTSTTHHHHTTT----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC-
T ss_pred ccceecCHHHHHHHHHhcCCCCcCEEEEE-cCcCcHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 4544 577777777777777788899999 99999999998864 5799999999999999999986 223689999
Q ss_pred EcchHHHhhhccCCccEEEEcCCcC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
++|+.+.. .++||.|+.|....
T Consensus 96 ~~D~~~~~---~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 96 EGDAIKTV---FPKFDVCTANIPYK 117 (299)
T ss_dssp ---CCSSC---CCCCSEEEEECCGG
T ss_pred ECchhhCC---cccCCEEEEcCCcc
Confidence 99998652 35899999987644
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=92.85 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=77.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH-hhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL-LLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~-l~~l~~~fD~Vfi 117 (211)
.++.+|||+ |||+|..+..++.. +.+++++|+++++++.|++++. +++.+|+.+. ++...++||+|++
T Consensus 31 ~~~~~vLdi-G~G~G~~~~~l~~~----~~~~~~~D~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~v~~ 99 (230)
T 3cc8_A 31 KEWKEVLDI-GCSSGALGAAIKEN----GTRVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDMPYEEEQFDCVIF 99 (230)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHTT----TCEEEEEESSHHHHHHHHTTSS------EEEESCTTTCCCCSCTTCEEEEEE
T ss_pred cCCCcEEEe-CCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHhCC------cEEEcchhhcCCCCCCCccCEEEE
Confidence 467899999 99999999998864 4799999999999999987642 6888998764 2212478999998
Q ss_pred cCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.... .+....++.+.+.|+|||.+++..
T Consensus 100 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 100 GDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp ESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred CChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 7543 356789999999999988887754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=99.13 Aligned_cols=102 Identities=17% Similarity=0.075 Sum_probs=79.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+..+|||+ |||+|..+..+++..+ +.+++.+|. +++.. +++.+ +..++|+++.+|+.+.+ . +||+|+
T Consensus 183 ~~~~~vLDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~---p-~~D~v~ 252 (348)
T 3lst_A 183 PATGTVADV-GGGRGGFLLTVLREHP--GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV---P-HADVHV 252 (348)
T ss_dssp CSSEEEEEE-TCTTSHHHHHHHHHCT--TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC---C-CCSEEE
T ss_pred cCCceEEEE-CCccCHHHHHHHHHCC--CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC---C-CCcEEE
Confidence 456789999 9999999999999874 578999999 45544 44444 55678999999997433 3 899999
Q ss_pred EcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 117 IDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 117 iD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+-.-.. +....++.+.+.|+|||.+++.|.....
T Consensus 253 ~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 253 LKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred EehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 865322 2368999999999999999998876543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=93.64 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=77.8
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccC
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~ 110 (211)
.+..+....++.+|||+ |||+|..+..++. . +++|+++++++.|+++ +++++.+|+.+. +...+
T Consensus 38 ~~~~l~~~~~~~~vLDi-G~G~G~~~~~l~~-----~---~~vD~s~~~~~~a~~~------~~~~~~~d~~~~-~~~~~ 101 (219)
T 1vlm_A 38 ELQAVKCLLPEGRGVEI-GVGTGRFAVPLKI-----K---IGVEPSERMAEIARKR------GVFVLKGTAENL-PLKDE 101 (219)
T ss_dssp HHHHHHHHCCSSCEEEE-TCTTSTTHHHHTC-----C---EEEESCHHHHHHHHHT------TCEEEECBTTBC-CSCTT
T ss_pred HHHHHHHhCCCCcEEEe-CCCCCHHHHHHHH-----H---hccCCCHHHHHHHHhc------CCEEEEcccccC-CCCCC
Confidence 33344444557899999 9999998887753 1 9999999999999986 588999998764 32256
Q ss_pred CccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+|++.... .+....++.+.+.|+|||.+++.+
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 102 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999987643 356889999999999998888765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-10 Score=89.31 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh-------------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL------------- 105 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l------------- 105 (211)
.+..+|||+ |||+|..+..++...++.+++|+++|+++.. ...+++++.+|+.+..
T Consensus 21 ~~~~~vLDl-GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDI-GCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEE-SCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEe-CCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhccccccccc
Confidence 456789999 9999999999998864225899999999831 1246899999987642
Q ss_pred ----------hhc-cCCccEEEEcCCcCc-------H-------HHHHHHHHhcCCCCcEEEE
Q 041509 106 ----------LSH-FREADFVLIDCNLEN-------H-------EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 106 ----------~~l-~~~fD~VfiD~~~~~-------y-------~~~l~~~~~~L~pgG~viv 143 (211)
..+ .++||+|+.|..... . ...++.+.+.|+|||.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 002 468999999864321 1 2367788899999888776
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-10 Score=94.06 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=75.0
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+++...+.+...+...+..+|||| |||+|+.|..|++. +++|++||+|+++++.+++++.. .++++++
T Consensus 7 ~GQnFL~d~~i~~~iv~~~~~~~~~~VLEI-G~G~G~lt~~La~~----~~~V~avEid~~~~~~~~~~~~~-~~~v~~i 80 (255)
T 3tqs_A 7 FGQHFLHDSFVLQKIVSAIHPQKTDTLVEI-GPGRGALTDYLLTE----CDNLALVEIDRDLVAFLQKKYNQ-QKNITIY 80 (255)
T ss_dssp --CCEECCHHHHHHHHHHHCCCTTCEEEEE-CCTTTTTHHHHTTT----SSEEEEEECCHHHHHHHHHHHTT-CTTEEEE
T ss_pred CCcccccCHHHHHHHHHhcCCCCcCEEEEE-cccccHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHhh-CCCcEEE
Confidence 3554 3567788877777777788999999 99999999999864 47999999999999999999874 4689999
Q ss_pred EcchHHH-hhhc--cCCccEEEEcCC
Q 041509 98 IGDAQSL-LLSH--FREADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~-l~~l--~~~fD~VfiD~~ 120 (211)
+||+.+. ++.+ .++|| |+.+.+
T Consensus 81 ~~D~~~~~~~~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 81 QNDALQFDFSSVKTDKPLR-VVGNLP 105 (255)
T ss_dssp ESCTTTCCGGGSCCSSCEE-EEEECC
T ss_pred EcchHhCCHHHhccCCCeE-EEecCC
Confidence 9999886 3333 35788 665544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=97.91 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=70.3
Q ss_pred HHHHHHHhhCCC--CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------C-CCCcEEEE
Q 041509 30 EFISALAAGNNA--QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------L-DASHVEFV 97 (211)
Q Consensus 30 ~lL~~l~~~~~~--~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~-~~~~V~~~ 97 (211)
+.+...+...++ .+|||+ |||+|..|+++|.. +++|++||.++.+++.++++++ + ..++++++
T Consensus 76 e~l~~al~l~~g~~~~VLDl-~~G~G~dal~lA~~----g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDA-TAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEET-TCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred HHHHHHhcccCCCCCEEEEc-CCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence 445555555556 799999 89999999999986 5689999999998888887765 1 22579999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
++|+.+.++.+.++||+||+|...
T Consensus 151 ~~D~~~~L~~~~~~fDvV~lDP~y 174 (258)
T 2oyr_A 151 HASSLTALTDITPRPQVVYLDPMF 174 (258)
T ss_dssp ESCHHHHSTTCSSCCSEEEECCCC
T ss_pred ECCHHHHHHhCcccCCEEEEcCCC
Confidence 999999987666689999999743
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=94.70 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=69.9
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc---c-C
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH---F-R 110 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l---~-~ 110 (211)
.+...++.+|||+ |||+|..|+++++.++ +++|++||.|+++++.|+++++...++++++++|+.++...+ . +
T Consensus 21 ~L~~~~g~~vLD~-g~G~G~~s~~la~~~~--~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~ 97 (301)
T 1m6y_A 21 FLKPEDEKIILDC-TVGEGGHSRAILEHCP--GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIE 97 (301)
T ss_dssp HHCCCTTCEEEET-TCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCS
T ss_pred hcCCCCCCEEEEE-eCCcCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCC
Confidence 3355677899999 8999999999999874 689999999999999999999822278999999988753212 1 5
Q ss_pred CccEEEEcCCcC
Q 041509 111 EADFVLIDCNLE 122 (211)
Q Consensus 111 ~fD~VfiD~~~~ 122 (211)
+||.|++|....
T Consensus 98 ~~D~Vl~D~gvS 109 (301)
T 1m6y_A 98 KVDGILMDLGVS 109 (301)
T ss_dssp CEEEEEEECSCC
T ss_pred CCCEEEEcCccc
Confidence 899999998765
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=95.23 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=84.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++|||| |||+|..++.++++.| +.+++..|. |++++.|++++. ...++|+++.||..+- ....+|++++
T Consensus 178 ~~~~~v~Dv-GgG~G~~~~~l~~~~p--~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~---~~~~~D~~~~ 250 (353)
T 4a6d_A 178 SVFPLMCDL-GGGAGALAKECMSLYP--GCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD---PLPEADLYIL 250 (353)
T ss_dssp GGCSEEEEE-TCTTSHHHHHHHHHCS--SCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS---CCCCCSEEEE
T ss_pred ccCCeEEee-CCCCCHHHHHHHHhCC--CceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC---CCCCceEEEe
Confidence 456789999 9999999999999875 578888887 889999999988 5578999999998653 2356899998
Q ss_pred cCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 118 DCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 118 D~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
-.-. ++-...++.+.+.|+|||.++|.|.++.+
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 5432 23367899999999999999999987754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-10 Score=90.49 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh-----hh-cc--
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL-----LS-HF-- 109 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l-----~~-l~-- 109 (211)
..++.+|||+ |||+|..|..+++. +++|++||++|.. ...+++++.+|+.+.. .. +.
T Consensus 23 ~~~g~~VLDl-G~G~G~~s~~la~~----~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 23 VRKGDAVIEI-GSSPGGWTQVLNSL----ARKIISIDLQEME----------EIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp SCTTCEEEEE-SCTTCHHHHHHTTT----CSEEEEEESSCCC----------CCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEE-eecCCHHHHHHHHc----CCcEEEEeccccc----------cCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 3567899999 89999999988864 6899999999852 1357999999986531 11 12
Q ss_pred --CCccEEEEcCCcC-------c-------HHHHHHHHHhcCCCCcEEEE
Q 041509 110 --READFVLIDCNLE-------N-------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 110 --~~fD~VfiD~~~~-------~-------y~~~l~~~~~~L~pgG~viv 143 (211)
++||+|+.|+... + ....++.+.++|+|||.+++
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~ 137 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL 137 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 5999999997432 1 24567788889999988876
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-10 Score=102.81 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--CCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--DASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
+++|||+ |||+|+.+++|+.. +++|++||+|+++++.|++|++ . ..++++++++|+.+.++.. .++||+||
T Consensus 94 g~~VLDL-gcG~G~~al~LA~~----g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 94 GTKVVDL-TGGLGIDFIALMSK----ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp TCEEEES-SCSSSHHHHHHHTT----CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCEEEEe-CCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 6899999 89999999998864 5799999999999999999998 2 2378999999999877643 46899999
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
+|.+
T Consensus 169 lDPP 172 (410)
T 3ll7_A 169 VDPA 172 (410)
T ss_dssp ECCE
T ss_pred ECCC
Confidence 9964
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=89.25 Aligned_cols=95 Identities=12% Similarity=-0.004 Sum_probs=71.2
Q ss_pred CCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE
Q 041509 20 GQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~ 98 (211)
++. .+++...+.+...+...+..+|||+ |||+|..|..++.. +++|++||+|+++++.|++++.. .+++++++
T Consensus 9 gQ~fl~d~~~~~~i~~~~~~~~~~~VLDi-G~G~G~lt~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~ 82 (244)
T 1qam_A 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEI-GSGKGHFTLELVQR----CNFVTAIEIDHKLCKTTENKLVD-HDNFQVLN 82 (244)
T ss_dssp -CCBCCCHHHHHHHHTTCCCCTTCEEEEE-CCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHTTT-CCSEEEEC
T ss_pred CccccCCHHHHHHHHHhCCCCCCCEEEEE-eCCchHHHHHHHHc----CCeEEEEECCHHHHHHHHHhhcc-CCCeEEEE
Confidence 443 3566666666666666677899999 99999999999976 47999999999999999999874 26899999
Q ss_pred cchHHHhhhccCCccEEEEcCCc
Q 041509 99 GDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+|+.+........| .|+.+.+-
T Consensus 83 ~D~~~~~~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 83 KDILQFKFPKNQSY-KIFGNIPY 104 (244)
T ss_dssp CCGGGCCCCSSCCC-EEEEECCG
T ss_pred ChHHhCCcccCCCe-EEEEeCCc
Confidence 99987632112344 46655543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=91.70 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=78.8
Q ss_pred HHHhhCCCCeEEEEccccH--HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC-CCCcEEEEEcchHHHh---h-
Q 041509 34 ALAAGNNAQLMVVACANVA--NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL-DASHVEFVIGDAQSLL---L- 106 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~--G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~-~~~~V~~~~gda~e~l---~- 106 (211)
.++.....+.|||| |||+ +-.+..+++...+ +.+|+.||.||.|++.||+.+.. ...+++|+.+|+.+.- .
T Consensus 72 ~l~~~~g~~q~LDL-GcG~pT~~~~~~la~~~~P-~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~ 149 (277)
T 3giw_A 72 HLAKEAGIRQFLDI-GTGIPTSPNLHEIAQSVAP-ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDA 149 (277)
T ss_dssp HHHHTSCCCEEEEE-SCCSCCSSCHHHHHHHHCT-TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTC
T ss_pred HhccccCCCEEEEe-CCCCCcccHHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcc
Confidence 33333466899999 9997 3344556655433 78999999999999999999873 2468999999997752 1
Q ss_pred -hccCCcc-----EEEEcCCc---Cc---HHHHHHHHHhcCCCCcEEEEEe
Q 041509 107 -SHFREAD-----FVLIDCNL---EN---HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 107 -~l~~~fD-----~VfiD~~~---~~---y~~~l~~~~~~L~pgG~viv~d 145 (211)
...+.|| .|++.+-. .+ ....++.+.+.|+|||.+++.+
T Consensus 150 ~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 150 PELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 1134565 36665432 12 3579999999999999888865
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=102.10 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=74.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..+|||+ |||+|..+..++.. +.+|+++|+++++++.|+++ +......+...+..+.++..+++||+|+..
T Consensus 106 ~~~~~VLDi-GcG~G~~~~~l~~~----g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~ 178 (416)
T 4e2x_A 106 GPDPFIVEI-GCNDGIMLRTIQEA----GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTEGPANVIYAA 178 (416)
T ss_dssp SSSCEEEEE-TCTTTTTHHHHHHT----TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCCEEEEe-cCCCCHHHHHHHHc----CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCCCCEEEEEEC
Confidence 456799999 99999999988864 56999999999999999976 222112222223333334336899999987
Q ss_pred CCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... .+....++.+.++|+|||.+++..
T Consensus 179 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 179 NTLCHIPYVQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp SCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 643 367899999999999988877753
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-09 Score=90.28 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHHHHHhh------cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH
Q 041509 8 NATKAYLKTLK------MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY 80 (211)
Q Consensus 8 ~~~~ay~~~~~------~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~ 80 (211)
..+.+.++... .+|. .+++...+.+...+...+. +|||| |||+|..|..|+.. +++|++||+|++++
T Consensus 8 ~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEI-G~G~G~lt~~L~~~----~~~V~avEid~~~~ 81 (271)
T 3fut_A 8 QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEV-GPGLGALTRALLEA----GAEVTAIEKDLRLR 81 (271)
T ss_dssp HHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEE-CCTTSHHHHHHHHT----TCCEEEEESCGGGH
T ss_pred HHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEE-eCchHHHHHHHHHc----CCEEEEEECCHHHH
Confidence 44556666533 2444 3677788777777777777 99999 99999999999975 47899999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 81 KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 81 ~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+.+++++.. .++++++||+.+.-......+|.|+.+.+-
T Consensus 82 ~~l~~~~~~--~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 82 PVLEETLSG--LPVRLVFQDALLYPWEEVPQGSLLVANLPY 120 (271)
T ss_dssp HHHHHHTTT--SSEEEEESCGGGSCGGGSCTTEEEEEEECS
T ss_pred HHHHHhcCC--CCEEEEECChhhCChhhccCccEEEecCcc
Confidence 999999873 689999999987632112368999876543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=97.46 Aligned_cols=119 Identities=10% Similarity=-0.045 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC------------------------------------CC
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ------------------------------------TG 67 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~------------------------------------~~ 67 (211)
+.+..+..|..++...+...|||. +||+|...+.+|..... ..
T Consensus 185 l~e~lAa~ll~l~~~~~~~~vlDp-~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 185 IKETMAAALVLLTSWHPDRPFYDP-VCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp CCHHHHHHHHHHSCCCTTSCEEET-TCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CcHHHHHHHHHHhCCCCCCeEEEc-CCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 455556666666665667789999 89999998888765431 12
Q ss_pred cEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-------cHHHHHHHHHhcCC--
Q 041509 68 GRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-------NHEGVLRAVQAGNK-- 136 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-------~y~~~l~~~~~~L~-- 136 (211)
.+|+++|+|+++++.|++|+. ++.++|+++++|+.+... .++||+|+.|.+-. ...+.++.+.+.|+
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 579999999999999999998 667789999999998643 46899999997632 22333443333332
Q ss_pred CCcEEEEEe
Q 041509 137 PNGAVVVGY 145 (211)
Q Consensus 137 pgG~viv~d 145 (211)
+||.+++..
T Consensus 342 ~g~~~~iit 350 (393)
T 3k0b_A 342 PTWSVYVLT 350 (393)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 477776654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-09 Score=89.65 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHcc-----CCCcEEEEEe-----CChh----------------------HHHH---H
Q 041509 39 NNAQLMVVACANVANATTLALAAAAH-----QTGGRVVCIL-----RRVE----------------------EYKL---S 83 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~-----~~~g~v~tiE-----~~~~----------------------~~~~---A 83 (211)
.-|..|+|+ |+.-|.|++.++.... ....+|+++| ..+. .++. .
T Consensus 68 ~vpG~ivE~-GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 68 DVPGVIMEF-GVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp TSCSEEEEE-CCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred CCCCeEEEE-ecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 447789999 9999999998775321 2368999999 3321 1111 2
Q ss_pred HHHhc--CC-CCcEEEEEcchHHHhhhc-----cCCccEEEEcCCc-CcHHHHHHHHHhcCCCCcEEEEEecCC---CCC
Q 041509 84 KKILG--LD-ASHVEFVIGDAQSLLLSH-----FREADFVLIDCNL-ENHEGVLRAVQAGNKPNGAVVVGYNAF---RKG 151 (211)
Q Consensus 84 r~~~~--~~-~~~V~~~~gda~e~l~~l-----~~~fD~VfiD~~~-~~y~~~l~~~~~~L~pgG~viv~dn~~---~~~ 151 (211)
+++++ +. .++|+++.|++.+.|+.+ .++|||||+|+++ ..+.++++.+.++|+| |+++++||.. ++|
T Consensus 147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~-GGvIv~DD~~~~~w~G 225 (257)
T 3tos_A 147 HECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTK-GSIVAFDELDNPKWPG 225 (257)
T ss_dssp HHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE-EEEEEESSTTCTTCTH
T ss_pred HhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCC-CcEEEEcCCCCCCChH
Confidence 23333 43 489999999999999864 3479999999997 3567789999999998 5577779964 233
Q ss_pred ---cee----cCCCcEEEeecCCcEEEEE
Q 041509 152 ---SWR----SSGSKSQLLPIGEGLLVTR 173 (211)
Q Consensus 152 ---~~~----~~~~~~v~lpig~Gl~v~~ 173 (211)
.|. +.+.....+|...+....+
T Consensus 226 ~~~A~~ef~~~~~~~i~~~p~~~~~~y~~ 254 (257)
T 3tos_A 226 ENIAMRKVLGLDHAPLRLLPGRPAPAYLR 254 (257)
T ss_dssp HHHHHHHHTCTTSSCCEECTTCSCCEEEE
T ss_pred HHHHHHHHHhhCCCeEEEccCCCCCEEEE
Confidence 222 4556677788877766544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=97.25 Aligned_cols=119 Identities=11% Similarity=0.033 Sum_probs=85.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC------------------------------------CC
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ------------------------------------TG 67 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~------------------------------------~~ 67 (211)
+.+..+..|..++...+...|||. +||+|..++.+|..... ..
T Consensus 179 l~e~lAa~ll~~~~~~~~~~vlDp-~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 179 IRETLAAGLIYLTPWKAGRVLVDP-MCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CCHHHHHHHHHTSCCCTTSCEEET-TCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred CcHHHHHHHHHhhCCCCCCeEEEc-CCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 344455555555555567789999 89999999988776421 12
Q ss_pred cEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-------cHHHHHHHHHhcCC--
Q 041509 68 GRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-------NHEGVLRAVQAGNK-- 136 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-------~y~~~l~~~~~~L~-- 136 (211)
.+|+++|+|+++++.|++|+. ++.++|+|.++|+.+... .++||+|+.|.+-. ...+.++.+.+.|+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 689999999999999999998 667789999999998643 46899999998742 22334444433333
Q ss_pred CCcEEEEEe
Q 041509 137 PNGAVVVGY 145 (211)
Q Consensus 137 pgG~viv~d 145 (211)
+|+.+++..
T Consensus 336 ~g~~~~iit 344 (385)
T 3ldu_A 336 KNWSYYLIT 344 (385)
T ss_dssp BSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 367766644
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=91.64 Aligned_cols=106 Identities=10% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHh-hhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLL-LSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l-~~l 108 (211)
.|..+....++++|||| |||+|..|.+|++. ...+|++||++++|++.|+++.. ++..... +..... ..+
T Consensus 28 ~L~~~~~~~~g~~VLDi-GcGtG~~t~~la~~---g~~~V~gvDis~~ml~~a~~~~~----~~~~~~~~~~~~~~~~~~ 99 (232)
T 3opn_A 28 ALKEFHLEINGKTCLDI-GSSTGGFTDVMLQN---GAKLVYALDVGTNQLAWKIRSDE----RVVVMEQFNFRNAVLADF 99 (232)
T ss_dssp HHHHTTCCCTTCEEEEE-TCTTSHHHHHHHHT---TCSEEEEECSSCCCCCHHHHTCT----TEEEECSCCGGGCCGGGC
T ss_pred HHHHcCCCCCCCEEEEE-ccCCCHHHHHHHhc---CCCEEEEEcCCHHHHHHHHHhCc----cccccccceEEEeCHhHc
Confidence 34433323346799999 99999999999875 13599999999999999887643 2222111 121111 111
Q ss_pred cC-CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 FR-EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 ~~-~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.. .||.+..|.........++.+.+.|+|||.+++.
T Consensus 100 ~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 100 EQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred CcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence 22 3677777776666678999999999999988875
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=85.57 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=71.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCC-------CcEEEEEeCChhHHHHHHHHhcCCCCcEEEE-EcchHHHhh---
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQT-------GGRVVCILRRVEEYKLSKKILGLDASHVEFV-IGDAQSLLL--- 106 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~-------~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~-~gda~e~l~--- 106 (211)
..++.+|||+ |||+|..++.+++..+.. .++|+++|+++.. . ..+++++ .+|+.+...
T Consensus 20 ~~~~~~vLDl-GcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~-~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDC-GAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P-LEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEE-TCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C-CTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEe-CCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c-CCCCeEEEeccCCCHHHHHH
Confidence 3467899999 999999999999986421 1899999999842 1 2468888 888654321
Q ss_pred ---hc-cCCccEEEEcCCcC-------cH-------HHHHHHHHhcCCCCcEEEEEe
Q 041509 107 ---SH-FREADFVLIDCNLE-------NH-------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 107 ---~l-~~~fD~VfiD~~~~-------~y-------~~~l~~~~~~L~pgG~viv~d 145 (211)
.+ .++||+|+.|.... +. ...++.+.+.|+|||.+++.+
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 11 35899999976321 11 467888999999999888754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-09 Score=94.39 Aligned_cols=119 Identities=8% Similarity=-0.111 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC------------------------------------CC
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ------------------------------------TG 67 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~------------------------------------~~ 67 (211)
+.+..+..|..++.-.+...+||. +||+|...+.+|..... ..
T Consensus 178 l~e~LAaall~l~~~~~~~~llDp-~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 178 IKENMAAAIILLSNWFPDKPFVDP-TCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CCHHHHHHHHHHTTCCTTSCEEET-TCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CcHHHHHHHHHHhCCCCCCeEEEe-CCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 445556656566665667789999 89999998887765431 12
Q ss_pred cEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCc-------CcHHHHHHHHHhcCC--
Q 041509 68 GRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNL-------ENHEGVLRAVQAGNK-- 136 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-------~~y~~~l~~~~~~L~-- 136 (211)
.+|+++|+|+++++.|++|++ ++.++|+++.+|+.+... .++||+|+.|.+- ....+.++.+.+.|+
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~ 334 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL 334 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence 579999999999999999998 777789999999998643 4689999999763 223444554444443
Q ss_pred CCcEEEEEe
Q 041509 137 PNGAVVVGY 145 (211)
Q Consensus 137 pgG~viv~d 145 (211)
|||.+++..
T Consensus 335 ~g~~~~iit 343 (384)
T 3ldg_A 335 KTWSQFILT 343 (384)
T ss_dssp TTSEEEEEE
T ss_pred CCcEEEEEE
Confidence 378776654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.7e-10 Score=98.02 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=86.9
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG 99 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g 99 (211)
++...++..++++..++...++.+|||+ |||+|..++.+++.... ..+++++|+++++++.| .+++++++
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~-gcGtG~~~~~~~~~~~~-~~~i~gvDi~~~~~~~a--------~~~~~~~~ 88 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEP-ACAHGPFLRAFREAHGT-AYRFVGVEIDPKALDLP--------PWAEGILA 88 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEE-TCTTCHHHHHHHHHHCS-CSEEEEEESCTTTCCCC--------TTEEEEES
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEEC-CCCChHHHHHHHHHhCC-CCeEEEEECCHHHHHhC--------CCCcEEeC
Confidence 4455667778888777765567799999 89999999999887532 57999999999998766 57999999
Q ss_pred chHHHhhhccCCccEEEEcCCc--------------C------------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 100 DAQSLLLSHFREADFVLIDCNL--------------E------------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~--------------~------------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.+..+ .++||+|+.+.+- . .|..+++.+.++|+|||.+++..
T Consensus 89 D~~~~~~--~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 89 DFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp CGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChhhcCc--cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9987643 4789999996321 0 12366888899999999876544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=91.77 Aligned_cols=103 Identities=18% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCeEEEEccccHHH----HHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc------C------------------
Q 041509 40 NAQLMVVACANVANA----TTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG------L------------------ 89 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~----stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~------~------------------ 89 (211)
++.+|||+ |||||- .++.|++.++.. +.+|+++|+|+++++.|+++.- +
T Consensus 105 ~~~rIld~-GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSA-AASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEES-CCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEe-eccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 45689999 999997 456667665421 3599999999999999999751 0
Q ss_pred --------CCCcEEEEEcchHHH-hhhccCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 90 --------DASHVEFVIGDAQSL-LLSHFREADFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 90 --------~~~~V~~~~gda~e~-l~~l~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+..+|+|..+|..+. .+ ..++||+||.-.- .+...+.++.+.+.|+|||.+++.
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 013699999999872 12 1478999998432 223478899999999998877763
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=94.71 Aligned_cols=97 Identities=15% Similarity=0.063 Sum_probs=77.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+..+|||| |||+|..+..+++..+ +.+++.+|. |++++.|++ ..+|+++.||..+-++ .. |+|++..
T Consensus 203 ~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~p---~~-D~v~~~~ 269 (368)
T 3reo_A 203 GLTTIVDV-GGGTGAVASMIVAKYP--SINAINFDL-PHVIQDAPA-----FSGVEHLGGDMFDGVP---KG-DAIFIKW 269 (368)
T ss_dssp TCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTTCCC---CC-SEEEEES
T ss_pred CCCEEEEe-CCCcCHHHHHHHHhCC--CCEEEEEeh-HHHHHhhhh-----cCCCEEEecCCCCCCC---CC-CEEEEec
Confidence 46789999 9999999999999874 579999999 888876653 2579999999986333 23 9999865
Q ss_pred CcC-----cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-.. +....++.+.+.|+|||.+++.|....
T Consensus 270 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 270 ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp CGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 332 335789999999999999999887654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=93.75 Aligned_cols=98 Identities=18% Similarity=0.081 Sum_probs=78.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..+|||| |||+|..+..+++..+ +.+++.+|. |++++.|++ ..+|+++.+|+.+-++ .. |+|++-
T Consensus 200 ~~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p---~~-D~v~~~ 266 (364)
T 3p9c_A 200 EGLGTLVDV-GGGVGATVAAIAAHYP--TIKGVNFDL-PHVISEAPQ-----FPGVTHVGGDMFKEVP---SG-DTILMK 266 (364)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTTCCC---CC-SEEEEE
T ss_pred cCCCEEEEe-CCCCCHHHHHHHHHCC--CCeEEEecC-HHHHHhhhh-----cCCeEEEeCCcCCCCC---CC-CEEEeh
Confidence 346899999 9999999999999875 578999999 888776653 2689999999987333 23 999986
Q ss_pred CCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 119 CNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 119 ~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.-. ++....++.+.+.|+|||.+++.|....
T Consensus 267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 533 2346789999999999999999887654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=8e-10 Score=89.03 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
..++..+....++.+|||+ |||+|..+..++ .+++++|+++. +++++.+|+.+. +..
T Consensus 56 ~~~~~~l~~~~~~~~vLDi-G~G~G~~~~~l~-------~~v~~~D~s~~--------------~~~~~~~d~~~~-~~~ 112 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADF-GCGDCRLASSIR-------NPVHCFDLASL--------------DPRVTVCDMAQV-PLE 112 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEE-TCTTCHHHHHCC-------SCEEEEESSCS--------------STTEEESCTTSC-SCC
T ss_pred HHHHHHHhccCCCCeEEEE-CCcCCHHHHHhh-------ccEEEEeCCCC--------------CceEEEeccccC-CCC
Confidence 3456666555567899999 999999877662 58999999987 466788888763 322
Q ss_pred cCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||+|++... ..+....++.+.+.|+|||.+++.+.
T Consensus 113 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 113 DESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp TTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence 578999998654 24678899999999999998888763
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=96.89 Aligned_cols=120 Identities=10% Similarity=-0.073 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC-----------CCcEEEEEeCChhHHHHHHHHhc--C
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ-----------TGGRVVCILRRVEEYKLSKKILG--L 89 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~-----------~~g~v~tiE~~~~~~~~Ar~~~~--~ 89 (211)
.-++...+++..++...+..+|+|. |||+|...+.++..+.. ...+++++|+++.+++.|+.|+. +
T Consensus 154 yTP~~v~~~mv~~l~~~~~~~VlDp-acGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g 232 (445)
T 2okc_A 154 FTPRPLIQAMVDCINPQMGETVCDP-ACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG 232 (445)
T ss_dssp CCCHHHHHHHHHHHCCCTTCCEEET-TCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHhCCCCCCEEecc-CCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4556678888888877777899999 79999999888876532 13679999999999999999987 5
Q ss_pred CCC-cEEEEEcchHHHhhhccCCccEEEEcCCcCc--------------------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 90 DAS-HVEFVIGDAQSLLLSHFREADFVLIDCNLEN--------------------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 90 ~~~-~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~--------------------y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ++++++||+..... .++||+|+.+.+... ...+++.+.+.|+|||.++++-
T Consensus 233 ~~~~~~~i~~gD~l~~~~--~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 233 IGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp CCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCEeeCCCCCCcc--cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 432 68899999986532 358999999854221 2478899999999998875443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=87.27 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE
Q 041509 20 GQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~ 98 (211)
++. .+++...+.+...+...+..+|||| |||+|..|..|+......+++|++||+|+++++.|+++. ..++++++
T Consensus 21 GQ~fL~d~~i~~~iv~~~~~~~~~~VLEI-G~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~ 96 (279)
T 3uzu_A 21 GQNFLVDHGVIDAIVAAIRPERGERMVEI-GPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GELLELHA 96 (279)
T ss_dssp SCCEECCHHHHHHHHHHHCCCTTCEEEEE-CCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GGGEEEEE
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEE-ccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CCCcEEEE
Confidence 454 4677788777777777788899999 999999999999875321366999999999999999984 46899999
Q ss_pred cchHHH
Q 041509 99 GDAQSL 104 (211)
Q Consensus 99 gda~e~ 104 (211)
+|+.+.
T Consensus 97 ~D~~~~ 102 (279)
T 3uzu_A 97 GDALTF 102 (279)
T ss_dssp SCGGGC
T ss_pred CChhcC
Confidence 999886
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=89.70 Aligned_cols=122 Identities=18% Similarity=0.113 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-----CCcEEEEEc
Q 041509 27 NEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-----ASHVEFVIG 99 (211)
Q Consensus 27 ~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-----~~~V~~~~g 99 (211)
....+...+....++.+|||+| ++.|-=|+.||+.. .+++|+++|+++..++..++|++ +. ..+|++...
T Consensus 135 ~aS~l~~~~L~~~pg~~VLD~C-AaPGGKT~~la~~~--~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~ 211 (359)
T 4fzv_A 135 AASLLPVLALGLQPGDIVLDLC-AAPGGKTLALLQTG--CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSW 211 (359)
T ss_dssp GGGHHHHHHHCCCTTEEEEESS-CTTCHHHHHHHHTT--CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred HHHHHHHHHhCCCCCCEEEEec-CCccHHHHHHHHhc--CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence 3445666667777888999997 99999999998765 36899999999999999999987 32 357999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-----------c----------------HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-----------N----------------HEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-----------~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|+...-....+.||.|++|++=. + ..+.++.+.++|+|||.++-+.+.+.+.
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence 99887554467999999996410 0 1457778888999999888877777654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.12 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=64.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
.+|-+|||| |||.|..+.+||+. +++||+||.++++++.|+.+.. ...-+|+++++++.++.... .++||+|+
T Consensus 65 ~~~~~vLDv-GCG~G~~~~~la~~----ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 65 GRPLNVLDL-GCAQGFFSLSLASK----GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp TSCCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCCeEEEE-CCCCcHHHHHHHhC----CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEE
Confidence 467899999 99999999999974 7899999999999999999886 22347999999999986543 56899998
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
.-.-
T Consensus 140 ~~e~ 143 (569)
T 4azs_A 140 GLSV 143 (569)
T ss_dssp EESC
T ss_pred ECcc
Confidence 6543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=8.4e-09 Score=91.53 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=79.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C-C----CCcEEEEEcchHHHhhhc-
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L-D----ASHVEFVIGDAQSLLLSH- 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~-~----~~~V~~~~gda~e~l~~l- 108 (211)
.+|++||-| |.|.|..+-.+.+. +..+|+.||+||+.++.|++++. + + .++++++.+|+.+.+.+.
T Consensus 204 ~~pkrVLII-GgGdG~~~revlkh---~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~ 279 (381)
T 3c6k_A 204 YTGKDVLIL-GGGDGGILCEIVKL---KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA 279 (381)
T ss_dssp CTTCEEEEE-ECTTCHHHHHHHTT---CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEE-CCCcHHHHHHHHhc---CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence 467999999 99999877766653 24799999999999999999975 1 1 246999999999998643
Q ss_pred --cCCccEEEEcCCc------------Cc-HHHHHHHHHhcCCCCcEEEE
Q 041509 109 --FREADFVLIDCNL------------EN-HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 --~~~fD~VfiD~~~------------~~-y~~~l~~~~~~L~pgG~viv 143 (211)
.++||+|++|... .. +.++++.+.+.|+|+|.++.
T Consensus 280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999999521 11 26789999999999776554
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=93.83 Aligned_cols=122 Identities=8% Similarity=-0.050 Sum_probs=92.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC----------------cEEEEEeCChhHHHHHHH
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG----------------GRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~----------------g~v~tiE~~~~~~~~Ar~ 85 (211)
..-++...+++..++...+..+|+|. +||+|.+.+.++..+.... .+++++|+++.+++.|+.
T Consensus 151 fyTP~~iv~~mv~~l~p~~~~~VlDP-aCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~ 229 (541)
T 2ar0_A 151 YFTPRPLIKTIIHLLKPQPREVVQDP-AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 229 (541)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCCEEET-TCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHhccCCCCeEecC-CcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHH
Confidence 34555677888888877777899999 7999999888887764322 379999999999999999
Q ss_pred Hhc--CCCC----cEEEEEcchHHHhhhccCCccEEEEcCCcC-----------------cHHHHHHHHHhcCCCCcEEE
Q 041509 86 ILG--LDAS----HVEFVIGDAQSLLLSHFREADFVLIDCNLE-----------------NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 86 ~~~--~~~~----~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----------------~y~~~l~~~~~~L~pgG~vi 142 (211)
|+. +... ++.+++||++.......++||+|+.+.+.. .+..+++.+.+.|+|||.+.
T Consensus 230 nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 309 (541)
T 2ar0_A 230 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 309 (541)
T ss_dssp HHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence 987 4332 278999999765432257899999986422 13468899999999988765
Q ss_pred EE
Q 041509 143 VG 144 (211)
Q Consensus 143 v~ 144 (211)
++
T Consensus 310 ~V 311 (541)
T 2ar0_A 310 VV 311 (541)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-11 Score=101.62 Aligned_cols=117 Identities=10% Similarity=-0.016 Sum_probs=84.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
..++...+.+...+...+..+|||+ |||+|..|..++.. +++|++||+++++++.|++++. ..++++++++|+.
T Consensus 12 l~~~~~~~~i~~~~~~~~~~~VLDi-G~G~G~~~~~l~~~----~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~ 85 (245)
T 1yub_A 12 LTSEKVLNQIIKQLNLKETDTVYEI-GTGKGHLTTKLAKI----SKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDIL 85 (245)
T ss_dssp CCCTTTHHHHHHHCCCCSSEEEEEC-SCCCSSCSHHHHHH----SSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCT
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEE-eCCCCHHHHHHHHh----CCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChh
Confidence 4566677766666666677899999 99999999999876 4799999999999999998876 2468999999998
Q ss_pred HHhhhccCCccEEEEcCCcCc----HHH----------HH----HHHHhcCCCCcEEEEEec
Q 041509 103 SLLLSHFREADFVLIDCNLEN----HEG----------VL----RAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~----y~~----------~l----~~~~~~L~pgG~viv~dn 146 (211)
+......++| .|+.+.+-.. ... ++ +.+.++|+|||.+.+...
T Consensus 86 ~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 86 QFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp TTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred hcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 7632112568 6666643211 111 22 556777888887766443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-08 Score=83.45 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=76.3
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.++. ..++...+.+...+...+..+|||| |||+|..|..|+.. ..++|++||+|+.+++.++++ . ..+++++
T Consensus 9 ~GQnfl~d~~i~~~iv~~~~~~~~~~VLDi-G~G~G~lt~~L~~~---~~~~v~avEid~~~~~~~~~~-~--~~~v~~i 81 (249)
T 3ftd_A 9 FGQHLLVSEGVLKKIAEELNIEEGNTVVEV-GGGTGNLTKVLLQH---PLKKLYVIELDREMVENLKSI-G--DERLEVI 81 (249)
T ss_dssp CCSSCEECHHHHHHHHHHTTCCTTCEEEEE-ESCHHHHHHHHTTS---CCSEEEEECCCHHHHHHHTTS-C--CTTEEEE
T ss_pred ccccccCCHHHHHHHHHhcCCCCcCEEEEE-cCchHHHHHHHHHc---CCCeEEEEECCHHHHHHHHhc-c--CCCeEEE
Confidence 3554 3567777777777777778899999 99999999999864 147999999999999999988 3 4689999
Q ss_pred EcchHHHh-hhccCCccEEEEcCCcCcHHHHHHHHH
Q 041509 98 IGDAQSLL-LSHFREADFVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 98 ~gda~e~l-~~l~~~fD~VfiD~~~~~y~~~l~~~~ 132 (211)
+||+.+.- +.+.+++ .|+.+.+-..-...+..+.
T Consensus 82 ~~D~~~~~~~~~~~~~-~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 82 NEDASKFPFCSLGKEL-KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp CSCTTTCCGGGSCSSE-EEEEECCTTTHHHHHHHHH
T ss_pred EcchhhCChhHccCCc-EEEEECchhccHHHHHHHH
Confidence 99998762 3222333 5665655433344444443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-09 Score=91.73 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..+|||+ |||+|..+..+++..+ +.+++++|+ |++++.|++. .+|+++.+|+.+.++ .||+|++-
T Consensus 187 ~~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~p----~~D~v~~~ 253 (352)
T 1fp2_A 187 DGLESIVDV-GGGTGTTAKIICETFP--KLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFTSIP----NADAVLLK 253 (352)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTTCCC----CCSEEEEE
T ss_pred ccCceEEEe-CCCccHHHHHHHHHCC--CCeEEEeeC-HHHHhhcccC-----CCcEEEeccccCCCC----CccEEEee
Confidence 456899999 9999999999998874 579999999 9998877652 359999999976322 49999986
Q ss_pred CCcC-----cHHHHHHHHHhcCCC---CcEEEEEecCCC
Q 041509 119 CNLE-----NHEGVLRAVQAGNKP---NGAVVVGYNAFR 149 (211)
Q Consensus 119 ~~~~-----~y~~~l~~~~~~L~p---gG~viv~dn~~~ 149 (211)
.-.. .....++.+.+.|+| ||.+++.|....
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 5322 234889999999999 999999876543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-09 Score=93.41 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=77.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|..+..+++..+ +.+++.+|+ |.+++.|++. .+|+++.+|+.+.+ .. ||+|++.
T Consensus 208 ~~~~~vLDv-G~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~---~~-~D~v~~~ 274 (372)
T 1fp1_D 208 EGISTLVDV-GGGSGRNLELIISKYP--LIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFASV---PQ-GDAMILK 274 (372)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTCC---CC-EEEEEEE
T ss_pred CCCCEEEEe-CCCCcHHHHHHHHHCC--CCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCcccCC---CC-CCEEEEe
Confidence 356899999 9999999999999874 579999999 9888777642 46999999997632 23 9999986
Q ss_pred CCcC---c--HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 119 CNLE---N--HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 119 ~~~~---~--y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.-.. + ....++.+.+.|+|||.+++.|....
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 5432 2 23889999999999999998875443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-08 Score=83.78 Aligned_cols=91 Identities=12% Similarity=-0.057 Sum_probs=66.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
.++...+.+...+...+..+|||| |||+|+.|. ++.+ . .++|++||+|+++++.+++++... +++++++||+.+
T Consensus 5 ~d~~i~~~iv~~~~~~~~~~VLEI-G~G~G~lt~-l~~~--~-~~~v~avEid~~~~~~a~~~~~~~-~~v~~i~~D~~~ 78 (252)
T 1qyr_A 5 NDQFVIDSIVSAINPQKGQAMVEI-GPGLAALTE-PVGE--R-LDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAMT 78 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEE-CCTTTTTHH-HHHT--T-CSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGGG
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEE-CCCCcHHHH-hhhC--C-CCeEEEEECCHHHHHHHHHHhccC-CceEEEECchhh
Confidence 456666666666666777899999 999999999 6532 1 234999999999999999987632 589999999987
Q ss_pred H-hhhcc---CCccEEEEcCC
Q 041509 104 L-LLSHF---READFVLIDCN 120 (211)
Q Consensus 104 ~-l~~l~---~~fD~VfiD~~ 120 (211)
. ++.+. +..|.|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 79 FNFGELAEKMGQPLRVFGNLP 99 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEECC
T ss_pred CCHHHhhcccCCceEEEECCC
Confidence 5 23221 24567776654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-09 Score=92.88 Aligned_cols=95 Identities=14% Similarity=-0.089 Sum_probs=68.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEE--EcchHHHhhhccCCcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFV--IGDAQSLLLSHFREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~--~gda~e~l~~l~~~fD 113 (211)
.+.++|||+ |||+|..+..+++. ++|++||+++ +...|+++.. ....+++++ .+|+.++ + .++||
T Consensus 81 ~~g~~VLDl-GcGtG~~s~~la~~-----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--~~~fD 150 (276)
T 2wa2_A 81 ELKGTVVDL-GCGRGSWSYYAASQ-----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--PFQAD 150 (276)
T ss_dssp CCCEEEEEE-SCTTCHHHHHHHTS-----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--CCCCS
T ss_pred CCCCEEEEe-ccCCCHHHHHHHHc-----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--CCCcC
Confidence 356789999 99999999988853 6899999999 5433332211 112278999 9998874 3 57899
Q ss_pred EEEEcCCc--CcH-------HHHHHHHHhcCCCCc--EEEE
Q 041509 114 FVLIDCNL--ENH-------EGVLRAVQAGNKPNG--AVVV 143 (211)
Q Consensus 114 ~VfiD~~~--~~y-------~~~l~~~~~~L~pgG--~viv 143 (211)
+|+.|... ..+ ...++.+.+.|+||| .+++
T Consensus 151 ~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 151 TVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred EEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 99999651 111 136788888999999 7776
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-08 Score=82.27 Aligned_cols=107 Identities=12% Similarity=-0.051 Sum_probs=77.1
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhcc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~ 109 (211)
+|.........|.+|||+ |||+|..++.++ ...+++++|+|+.+++.+++++.....+.++.++|.....+ .
T Consensus 95 ~fY~~i~~~~~p~~VLDl-GCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~--~ 166 (253)
T 3frh_A 95 TLYDFIFSAETPRRVLDI-ACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP--A 166 (253)
T ss_dssp HHHHHHTSSCCCSEEEEE-TCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC--C
T ss_pred HHHHHHhcCCCCCeEEEe-cCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC--C
Confidence 344444444578999999 999999877665 27899999999999999999987334778999999876543 5
Q ss_pred CCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||+|++--.- ..-...+ .+...|+++|.+|-++
T Consensus 167 ~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 167 EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 799999765211 1111223 4555678877666655
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=86.59 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=67.4
Q ss_pred hCCCCeEEEEccc------cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE-EEcchHHHhhhccC
Q 041509 38 GNNAQLMVVACAN------VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF-VIGDAQSLLLSHFR 110 (211)
Q Consensus 38 ~~~~~~VLEi~Gt------g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~-~~gda~e~l~~l~~ 110 (211)
..+..+|||+ || |+|. ..+++.+++ +++|+++|+++. + .++++ ++||+.+.. ..+
T Consensus 61 l~~g~~VLDL-GcGsg~~~GpGs--~~~a~~~~~-~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~--~~~ 122 (290)
T 2xyq_A 61 VPYNMRVIHF-GAGSDKGVAPGT--AVLRQWLPT-GTLLVDSDLNDF--------V----SDADSTLIGDCATVH--TAN 122 (290)
T ss_dssp CCTTCEEEEE-SCCCTTSBCHHH--HHHHHHSCT-TCEEEEEESSCC--------B----CSSSEEEESCGGGCC--CSS
T ss_pred CCCCCEEEEe-CCCCCCCCCcHH--HHHHHHcCC-CCEEEEEECCCC--------C----CCCEEEEECccccCC--ccC
Confidence 4566799999 89 6676 445655543 689999999998 1 35788 999998742 247
Q ss_pred CccEEEEcCCcC--------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLE--------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~--------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+|+.|.... .+.+.++.+.+.|+|||.+++..
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 899999985321 24578999999999988887743
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-09 Score=91.21 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=68.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEE--EcchHHHhhhccCCcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFV--IGDAQSLLLSHFREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~--~gda~e~l~~l~~~fD 113 (211)
.+.++|||+ |||+|..+..+++. ++|++||+++ ++..+++... ....+|+++ .+|+.++ + .++||
T Consensus 73 ~~g~~VLDl-GcGtG~~s~~la~~-----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--~~~fD 142 (265)
T 2oxt_A 73 ELTGRVVDL-GCGRGGWSYYAASR-----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--VERTD 142 (265)
T ss_dssp CCCEEEEEE-SCTTSHHHHHHHTS-----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--CCCCS
T ss_pred CCCCEEEEe-CcCCCHHHHHHHHc-----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--CCCCc
Confidence 456789999 99999999888753 7899999999 5333322111 112278999 8999874 3 57899
Q ss_pred EEEEcCCc--CcH----H---HHHHHHHhcCCCCc--EEEE
Q 041509 114 FVLIDCNL--ENH----E---GVLRAVQAGNKPNG--AVVV 143 (211)
Q Consensus 114 ~VfiD~~~--~~y----~---~~l~~~~~~L~pgG--~viv 143 (211)
+|+.|... .++ . ..++.+.+.|+||| .+++
T Consensus 143 ~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 143 VIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999651 111 1 36788888999999 7776
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=85.28 Aligned_cols=112 Identities=13% Similarity=-0.061 Sum_probs=80.8
Q ss_pred HHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 29 AEFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 29 ~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
-+|...+... ..|.+|||| |||+|-.++.++... +..+++++|+|+.+++.+++|+..+.-..++.+.|...-.+
T Consensus 120 D~fY~~i~~~i~~p~~VLDL-GCG~GpLAl~~~~~~--p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p- 195 (281)
T 3lcv_B 120 DEFYRELFRHLPRPNTLRDL-ACGLNPLAAPWMGLP--AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL- 195 (281)
T ss_dssp HHHHHHHGGGSCCCSEEEET-TCTTGGGCCTTTTCC--TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC-
T ss_pred HHHHHHHHhccCCCceeeee-ccCccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCC-
Confidence 3444444443 458999999 999999888887643 37899999999999999999998323348888999876543
Q ss_pred ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||++++--.-. .-...+ .+.+.|+|+|.+|.++-
T Consensus 196 -~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 196 -DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp -CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred -CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 68999998753221 112334 56667888777766654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.9e-08 Score=91.56 Aligned_cols=121 Identities=7% Similarity=-0.108 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc---------------------------------------
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAH--------------------------------------- 64 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~--------------------------------------- 64 (211)
+.+..+..+..++...+...|||. +||+|...+.+|....
T Consensus 174 l~e~LAa~ll~~~~~~~~~~llDP-~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 174 IKETLAAAIVMRSGWQPGTPLLDP-MCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SCHHHHHHHHHHTTCCTTSCEEET-TCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhCCCCCCeEEec-CCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 445556666666655567789999 7999999888776531
Q ss_pred -CCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-------cHHHHHHHHH-
Q 041509 65 -QTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-------NHEGVLRAVQ- 132 (211)
Q Consensus 65 -~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-------~y~~~l~~~~- 132 (211)
....+|+++|+|+.+++.|++|+. ++.+.|+|..+|+.+..+.. .++||+|+.+.+-. +..+.++.+.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 113589999999999999999998 77778999999999864322 23899999997532 2233343333
Q ss_pred --hcCCCCcEEEEEe
Q 041509 133 --AGNKPNGAVVVGY 145 (211)
Q Consensus 133 --~~L~pgG~viv~d 145 (211)
+.+.|||.+++..
T Consensus 333 ~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 333 IMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHCTTCEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 3345788877653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-08 Score=87.80 Aligned_cols=94 Identities=15% Similarity=-0.020 Sum_probs=66.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeC----ChhHHHHHHHHhcCC-CCcEEEEEc-chHHHhhhccCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILR----RVEEYKLSKKILGLD-ASHVEFVIG-DAQSLLLSHFREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~----~~~~~~~Ar~~~~~~-~~~V~~~~g-da~e~l~~l~~~f 112 (211)
.+.++|||+ |||+|..|..+++. ++|++||. ++.+++.+ ..+.. .++|+++.+ |+.+. + .++|
T Consensus 81 ~~g~~VLDl-GcG~G~~s~~la~~-----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l-~--~~~f 149 (305)
T 2p41_A 81 TPEGKVVDL-GCGRGGWSYYCGGL-----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFI-P--PERC 149 (305)
T ss_dssp CCCEEEEEE-TCTTSHHHHHHHTS-----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTS-C--CCCC
T ss_pred CCCCEEEEE-cCCCCHHHHHHHhc-----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccC-C--cCCC
Confidence 345789999 89999999998864 58999999 55433211 11211 257999999 88764 2 4689
Q ss_pred cEEEEcCCcC--c----HH---HHHHHHHhcCCCCcEEEE
Q 041509 113 DFVLIDCNLE--N----HE---GVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 113 D~VfiD~~~~--~----y~---~~l~~~~~~L~pgG~viv 143 (211)
|+|+.|.... . .. ..++.+.+.|+|||.+++
T Consensus 150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999997532 1 11 467778889999997765
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.5e-08 Score=84.78 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+..+|||+ |||+|..+..+++..+ +.+++.+|. +.+++.|++ ..+|+++.+|+.+ + + ..||+|++-.
T Consensus 193 ~~~~vlDv-G~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~--~-~-~~~D~v~~~~ 259 (358)
T 1zg3_A 193 GLESLVDV-GGGTGGVTKLIHEIFP--HLKCTVFDQ-PQVVGNLTG-----NENLNFVGGDMFK--S-I-PSADAVLLKW 259 (358)
T ss_dssp TCSEEEEE-TCTTSHHHHHHHHHCT--TSEEEEEEC-HHHHSSCCC-----CSSEEEEECCTTT--C-C-CCCSEEEEES
T ss_pred CCCEEEEE-CCCcCHHHHHHHHHCC--CCeEEEecc-HHHHhhccc-----CCCcEEEeCccCC--C-C-CCceEEEEcc
Confidence 56899999 9999999999999874 579999999 788876654 1359999999986 2 2 2599999865
Q ss_pred CcC---c--HHHHHHHHHhcCCC---CcEEEEEecCCC
Q 041509 120 NLE---N--HEGVLRAVQAGNKP---NGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~---~--y~~~l~~~~~~L~p---gG~viv~dn~~~ 149 (211)
-.. + ....++.+.+.|+| ||.+++.|....
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 322 2 34889999999999 999999876543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-08 Score=91.52 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=72.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+.+.|+++ |||+|......+.|....+ -+|++||.+| ++..|++..+ +..++|++++||..++- +.++.|+|
T Consensus 357 ~~~vVldV-GaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--LPEKVDII 432 (637)
T 4gqb_A 357 NVQVLMVL-GAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--APEKADII 432 (637)
T ss_dssp CEEEEEEE-SCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--CSSCEEEE
T ss_pred CCcEEEEE-CCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--CCcccCEE
Confidence 34579999 9999998555555443322 2789999998 6778888887 77899999999999873 46899999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcE
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~ 140 (211)
+..-- .+.-.+.+....+.|+|||.
T Consensus 433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGi 462 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLDGAQHFLKDDGV 462 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHHHHGGGEEEEEE
T ss_pred EEEcCcccccccCCHHHHHHHHHhcCCCcE
Confidence 96521 22335677777888999664
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-07 Score=84.02 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=96.1
Q ss_pred CCcCCChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHccC-CCcEEEEEeCChhHHHHHHHHhc--CCC-
Q 041509 20 GQKAKEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAHQ-TGGRVVCILRRVEEYKLSKKILG--LDA- 91 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~~-~~g~v~tiE~~~~~~~~Ar~~~~--~~~- 91 (211)
++..-++...+++..++. ..+..+|+|. +||+|...+.++..+.. ...+++++|+++.++++|+.|+. +..
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDP-aCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDA-TMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEET-TCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred CeecccHHHHHHHHHHHhcccCCCCCCEEeec-ccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 334566778899988887 4466799999 69999988888877642 24689999999999999999987 543
Q ss_pred CcEEEEEcchHHHh-h-hccCCccEEEEcCCcC-------------c---H----------HHHHHHHHhcCC-CCcEEE
Q 041509 92 SHVEFVIGDAQSLL-L-SHFREADFVLIDCNLE-------------N---H----------EGVLRAVQAGNK-PNGAVV 142 (211)
Q Consensus 92 ~~V~~~~gda~e~l-~-~l~~~fD~VfiD~~~~-------------~---y----------~~~l~~~~~~L~-pgG~vi 142 (211)
+++.+.+||....- + ....+||+|+.+++-. . | ..+++.+...|+ |||.+.
T Consensus 276 ~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 276 ENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp GGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred CccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 57999999998651 1 1256899999874311 0 1 247889999999 999864
Q ss_pred EE--ecCCCC
Q 041509 143 VG--YNAFRK 150 (211)
Q Consensus 143 v~--dn~~~~ 150 (211)
++ +..+..
T Consensus 356 ~VlP~g~Lf~ 365 (542)
T 3lkd_A 356 IVLPHGVLFR 365 (542)
T ss_dssp EEEETHHHHC
T ss_pred EEecchHhhC
Confidence 33 344443
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=79.28 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=90.5
Q ss_pred ChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH
Q 041509 25 EPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL 104 (211)
Q Consensus 25 ~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~ 104 (211)
++....++..+.. .++..+||+ .+|+|..++.+.+ . +.+++.||.+++..+..++|++. .++++++.+|+...
T Consensus 77 p~~l~~yf~~l~~-~n~~~~LDl-faGSGaLgiEaLS---~-~d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~ 149 (283)
T 2oo3_A 77 PSLFLEYISVIKQ-INLNSTLSY-YPGSPYFAINQLR---S-QDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSK 149 (283)
T ss_dssp CGGGHHHHHHHHH-HSSSSSCCE-EECHHHHHHHHSC---T-TSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHH
T ss_pred cHHHHHHHHHHHH-hcCCCceeE-eCCcHHHHHHHcC---C-CCeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHH
Confidence 3334455555544 467789999 6999998777654 2 57999999999999999999985 47899999999988
Q ss_pred hhhc---cCCccEEEEcCCcC---cHHHHHHHHHh--cCCCCcEEEEEecCCCC
Q 041509 105 LLSH---FREADFVLIDCNLE---NHEGVLRAVQA--GNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 105 l~~l---~~~fD~VfiD~~~~---~y~~~l~~~~~--~L~pgG~viv~dn~~~~ 150 (211)
+..+ ..+||+||+|.+-+ .|.+.++.+.+ .+.|+|.+++=.-++.+
T Consensus 150 L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 150 LNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp HHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred HHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 8755 23799999998543 67777777765 36778888876665553
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-07 Score=88.11 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC-----------CCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhh-
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ-----------TGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLS- 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~-----------~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~- 107 (211)
.+.|||+ |||+|......+.|... ...+|++||.+|.+....+.... +..++|+++.||..++-..
T Consensus 410 ~~VVldV-GaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLL-GGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEE-SCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEE-CCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 4579999 99999986544333311 13499999999987766555555 7789999999999987320
Q ss_pred ---ccCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcE
Q 041509 108 ---HFREADFVLIDCN-----LENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 108 ---l~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~ 140 (211)
..++.|+|+..-- .+...+.+..+.+.|+|+|.
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi 529 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI 529 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence 1579999997632 23456788888888999774
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.8e-08 Score=89.12 Aligned_cols=128 Identities=10% Similarity=-0.070 Sum_probs=91.8
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCC-------------CcEEEEEeCChhHHHHHHHHh
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQT-------------GGRVVCILRRVEEYKLSKKIL 87 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~-------------~g~v~tiE~~~~~~~~Ar~~~ 87 (211)
+..-++...+++..++...+ .+|+|. +||+|.+.+.++..+... ..+++++|+++.++++|+.|+
T Consensus 226 ~fyTP~~Vv~lmv~ll~p~~-~~VlDP-aCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl 303 (544)
T 3khk_A 226 QYYTPKSIVTLIVEMLEPYK-GRVYDP-AMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM 303 (544)
T ss_dssp TTCCCHHHHHHHHHHHCCCS-EEEEES-SCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCHHHHHHHHHHHhcCC-CeEeCc-ccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence 34567778899988887644 489999 699998877765543210 358999999999999999998
Q ss_pred c--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCc--------------------------------HHHHHHHHHh
Q 041509 88 G--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLEN--------------------------------HEGVLRAVQA 133 (211)
Q Consensus 88 ~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~--------------------------------y~~~l~~~~~ 133 (211)
. +...++.+.+||++........+||+|+.+.+-.. ...+++.+.+
T Consensus 304 ~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~ 383 (544)
T 3khk_A 304 VIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLY 383 (544)
T ss_dssp HHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHH
T ss_pred HHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHH
Confidence 7 65556666899987542212468999998754221 1257889999
Q ss_pred cCCCCcEEEEE--ecCCCC
Q 041509 134 GNKPNGAVVVG--YNAFRK 150 (211)
Q Consensus 134 ~L~pgG~viv~--dn~~~~ 150 (211)
.|+|||.+.++ +..+..
T Consensus 384 ~Lk~gGr~aiVlP~g~L~~ 402 (544)
T 3khk_A 384 HLAPTGSMALLLANGSMSS 402 (544)
T ss_dssp TEEEEEEEEEEEETHHHHC
T ss_pred HhccCceEEEEecchhhhc
Confidence 99999885443 344443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-07 Score=73.04 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=67.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh--ccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS--HFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~--l~~~fD~V 115 (211)
..++.+||++ |||. +++|.+++|++.|++++.. +++++++|+.+.... ..++||+|
T Consensus 10 ~~~g~~vL~~-~~g~------------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 10 ISAGQFVAVV-WDKS------------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp CCTTSEEEEE-ECTT------------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCCEEEEe-cCCc------------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEE
Confidence 3567899999 8874 2399999999999998652 489999999876431 26789999
Q ss_pred EEcCC---c-CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCN---L-ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~---~-~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.... . .+..+.++++.+.|+|||.+++.+.
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 98532 2 4568899999999999998888554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-06 Score=72.74 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=69.7
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH---hhh
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL---LLS 107 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~---l~~ 107 (211)
.+..+ ...+...+||. +||.|.-|..|++. +|+|+++|.||++++.|++ ++. +++++++++..++ +..
T Consensus 14 ~le~L-~~~~gg~~VD~-T~G~GGHS~~il~~----~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 14 ALDLL-AVRPGGVYVDA-TLGGAGHARGILER----GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHH-TCCTTCEEEET-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHHHHHHH
T ss_pred HHHhh-CCCCCCEEEEe-CCCCcHHHHHHHHC----CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHHHHHHH
Confidence 34433 45667899999 89999999999975 6899999999999999999 764 6899999999876 333
Q ss_pred c-cCCccEEEEcCCcCcHH
Q 041509 108 H-FREADFVLIDCNLENHE 125 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~y~ 125 (211)
. .+++|.|+.|...+.++
T Consensus 85 ~g~~~vDgIL~DLGvSS~Q 103 (285)
T 1wg8_A 85 LGVERVDGILADLGVSSFH 103 (285)
T ss_dssp TTCSCEEEEEEECSCCHHH
T ss_pred cCCCCcCEEEeCCcccccc
Confidence 2 25899999998876544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-06 Score=80.33 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=84.7
Q ss_pred cCCChhHHHHHHHHHh--h----CCCCeEEEEccccHHHHHHHHHHHccC-CCcEEEEEeCChhHHHHH--HHHhc--CC
Q 041509 22 KAKEPNEAEFISALAA--G----NNAQLMVVACANVANATTLALAAAAHQ-TGGRVVCILRRVEEYKLS--KKILG--LD 90 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~--~----~~~~~VLEi~Gtg~G~stl~la~a~~~-~~g~v~tiE~~~~~~~~A--r~~~~--~~ 90 (211)
...++..++++..++. . .++.+|||. |||+|...+.++..++. ...+++++|+++.+++.| +.|+. ..
T Consensus 297 FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDP-aCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L 375 (878)
T 3s1s_A 297 VPTDIELGKVLSIISQHILGRPLTEDEVISDP-AAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL 375 (878)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEET-TCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT
T ss_pred EcCCHHHHHHHHHHHhhhccccCCCCCEEEEC-CCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 3566777888877732 1 236689999 79999998888877642 136899999999999999 77664 11
Q ss_pred ---CCcEEEEEcchHHHhhhccCCccEEEEcCCcC--------------------------------cHHHHHHHHHhcC
Q 041509 91 ---ASHVEFVIGDAQSLLLSHFREADFVLIDCNLE--------------------------------NHEGVLRAVQAGN 135 (211)
Q Consensus 91 ---~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~--------------------------------~y~~~l~~~~~~L 135 (211)
.....+..+|..+.-....++||+|+.+.+-. .|..+++.+.++|
T Consensus 376 lhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lL 455 (878)
T 3s1s_A 376 VSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELV 455 (878)
T ss_dssp CBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHS
T ss_pred hcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhc
Confidence 12245666676653222257899999886431 1344677888899
Q ss_pred CCCcEEEEE
Q 041509 136 KPNGAVVVG 144 (211)
Q Consensus 136 ~pgG~viv~ 144 (211)
+|||.+.+.
T Consensus 456 KpGGrLAfI 464 (878)
T 3s1s_A 456 QDGTVISAI 464 (878)
T ss_dssp CTTCEEEEE
T ss_pred CCCcEEEEE
Confidence 999986554
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-06 Score=80.63 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=72.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccC--------C--CcEEEEEeCChhHHHHHHHHh--------------c------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQ--------T--GGRVVCILRRVEEYKLSKKIL--------------G------ 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~--------~--~g~v~tiE~~~~~~~~Ar~~~--------------~------ 88 (211)
.++-+|+|+ |.|+|+..+.+.++... . .-+++++|..|-..+..++.+ +
T Consensus 57 ~~~~~i~e~-gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (689)
T 3pvc_A 57 QQSCIFAET-GFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPL 135 (689)
T ss_dssp SSEEEEEEE-CCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCC
T ss_pred CCceEEEEe-cCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccC
Confidence 345679999 89999999988776421 1 157899999664444444311 1
Q ss_pred ------CCC---CcEEEEEcchHHHhhhc----cCCccEEEEcCCcCcH------HHHHHHHHhcCCCCcEE
Q 041509 89 ------LDA---SHVEFVIGDAQSLLLSH----FREADFVLIDCNLENH------EGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 89 ------~~~---~~V~~~~gda~e~l~~l----~~~fD~VfiD~~~~~y------~~~l~~~~~~L~pgG~v 141 (211)
.+. -.++++.||+.+.++++ ...+|.+|+|+-.+.+ .+++..+.++++||+.+
T Consensus 136 ~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~ 207 (689)
T 3pvc_A 136 AGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTF 207 (689)
T ss_dssp SEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEE
T ss_pred CCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEE
Confidence 011 25889999999999987 4789999999865544 88999999999986543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-05 Score=59.69 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=60.2
Q ss_pred CCCeEEEEccccHH-HHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE-EE
Q 041509 40 NAQLMVVACANVAN-ATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV-LI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G-~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V-fi 117 (211)
.+.+|||+ |||.| ..|.+|++-. +-.|+++|++|..++ ++.+|..+-..++-+.||+| -+
T Consensus 35 ~~~rVlEV-G~G~g~~vA~~La~~~---g~~V~atDInp~Av~--------------~v~dDiF~P~~~~Y~~~DLIYsi 96 (153)
T 2k4m_A 35 PGTRVVEV-GAGRFLYVSDYIRKHS---KVDLVLTDIKPSHGG--------------IVRDDITSPRMEIYRGAALIYSI 96 (153)
T ss_dssp SSSEEEEE-TCTTCCHHHHHHHHHS---CCEEEEECSSCSSTT--------------EECCCSSSCCHHHHTTEEEEEEE
T ss_pred CCCcEEEE-ccCCChHHHHHHHHhC---CCeEEEEECCccccc--------------eEEccCCCCcccccCCcCEEEEc
Confidence 35799999 99999 5899998642 568999999997765 77777766433334699999 56
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
..+.+-....++.+.+. |--++|
T Consensus 97 rPP~El~~~i~~lA~~v---~adliI 119 (153)
T 2k4m_A 97 RPPAEIHSSLMRVADAV---GARLII 119 (153)
T ss_dssp SCCTTTHHHHHHHHHHH---TCEEEE
T ss_pred CCCHHHHHHHHHHHHHc---CCCEEE
Confidence 77776666666666653 344555
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=9.2e-05 Score=63.85 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=79.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHH---HccCCCc--EEEEEeCChh---------HHHHHHHHhc----CCCC--cEEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAA---AAHQTGG--RVVCILRRVE---------EYKLSKKILG----LDAS--HVEFVI 98 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~---a~~~~~g--~v~tiE~~~~---------~~~~Ar~~~~----~~~~--~V~~~~ 98 (211)
.+.=+|||+ |-|+|+.++.... ...+ .. +.+++|.+|- ..+..+..+. .... ..+++.
T Consensus 95 ~~~~~IlE~-GFGTGLNfl~t~~~~~~~~~-~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~ 172 (308)
T 3vyw_A 95 RKVIRILDV-GFGLGYNLAVALKHLWEVNP-KLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLL 172 (308)
T ss_dssp CSEEEEEEE-CCTTSHHHHHHHHHHHHHCT-TCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEE
T ss_pred CCCcEEEEe-CCCccHHHHHHHHHHHHhCC-CcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEe
Confidence 344569999 8999997654332 2222 34 4588886431 2222322222 1123 357899
Q ss_pred cchHHHhhhccC-CccEEEEcCCc--Cc----HHHHHHHHHhcCCCCcEEEEEecCCCCCce----ecCCCcEEEee-cC
Q 041509 99 GDAQSLLLSHFR-EADFVLIDCNL--EN----HEGVLRAVQAGNKPNGAVVVGYNAFRKGSW----RSSGSKSQLLP-IG 166 (211)
Q Consensus 99 gda~e~l~~l~~-~fD~VfiD~~~--~~----y~~~l~~~~~~L~pgG~viv~dn~~~~~~~----~~~~~~~v~lp-ig 166 (211)
||+.+.++++.+ .+|.+|+|+-. .+ -.++++.+.++++|||.++ ... ..|.. ...+|...-.| .|
T Consensus 173 GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la-TYt--aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 173 GDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV-SYS--SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp SCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ESC--CCHHHHHHHHHTTCEEEEEECC-
T ss_pred chHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE-EEe--CcHHHHHHHHHCCCEEEecCCCC
Confidence 999999998754 89999999722 12 2789999999999976544 231 23322 25667654443 22
Q ss_pred --CcEEEEEEe
Q 041509 167 --EGLLVTRIA 175 (211)
Q Consensus 167 --~Gl~v~~~~ 175 (211)
+.|+++.+.
T Consensus 250 ~KReml~A~~~ 260 (308)
T 3vyw_A 250 RKRKGTVASLK 260 (308)
T ss_dssp --CEEEEEESS
T ss_pred CCCceeEEecC
Confidence 356666543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.2e-05 Score=67.52 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=66.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-----cCC
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-----FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-----~~~ 111 (211)
...+...+||. .+|.|--|..|++.+.+ .|+|+++|.||++++.|+ .+. .+++++++++..++...+ .++
T Consensus 54 ~i~pggiyVD~-TlG~GGHS~~iL~~lg~-~GrVig~D~Dp~Al~~A~-rL~--~~Rv~lv~~nF~~l~~~L~~~g~~~~ 128 (347)
T 3tka_A 54 NIRPDGIYIDG-TFGRGGHSRLILSQLGE-EGRLLAIDRDPQAIAVAK-TID--DPRFSIIHGPFSALGEYVAERDLIGK 128 (347)
T ss_dssp CCCTTCEEEES-CCTTSHHHHHHHTTCCT-TCEEEEEESCHHHHHHHT-TCC--CTTEEEEESCGGGHHHHHHHTTCTTC
T ss_pred CCCCCCEEEEe-CcCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHH-hhc--CCcEEEEeCCHHHHHHHHHhcCCCCc
Confidence 44567889999 69999999999988754 799999999999999994 442 578999999987764433 136
Q ss_pred ccEEEEcCCcCcH
Q 041509 112 ADFVLIDCNLENH 124 (211)
Q Consensus 112 fD~VfiD~~~~~y 124 (211)
+|.|+.|...+-+
T Consensus 129 vDgILfDLGVSS~ 141 (347)
T 3tka_A 129 IDGILLDLGVSSP 141 (347)
T ss_dssp EEEEEEECSCCHH
T ss_pred ccEEEECCccCHH
Confidence 9999999876643
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.79 E-value=5.5e-05 Score=66.46 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=63.2
Q ss_pred CCc-CCChhHHHHHHHHHhhCC------CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCC
Q 041509 20 GQK-AKEPNEAEFISALAAGNN------AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDAS 92 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~~------~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~ 92 (211)
+|. .+++...+-+...+...+ ...|||| |.|.|..|..|+.... ..+|++||+|+.++...++.+. .+
T Consensus 31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEI-GPG~G~LT~~Ll~~~~--~~~vvavE~D~~l~~~L~~~~~--~~ 105 (353)
T 1i4w_A 31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDL-YPGVGIQSAIFYNKYC--PRQYSLLEKRSSLYKFLNAKFE--GS 105 (353)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEE-SCTTCHHHHHHHHHHC--CSEEEEECCCHHHHHHHHHHTT--TS
T ss_pred CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEE-CCCCCHHHHHHHhhCC--CCEEEEEecCHHHHHHHHHhcc--CC
Confidence 444 467777776666655543 4789999 9999999999998642 4689999999999988888763 46
Q ss_pred cEEEEEcchHHH
Q 041509 93 HVEFVIGDAQSL 104 (211)
Q Consensus 93 ~V~~~~gda~e~ 104 (211)
+++++++|+.++
T Consensus 106 ~l~ii~~D~l~~ 117 (353)
T 1i4w_A 106 PLQILKRDPYDW 117 (353)
T ss_dssp SCEEECSCTTCH
T ss_pred CEEEEECCccch
Confidence 899999999765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00014 Score=67.11 Aligned_cols=129 Identities=9% Similarity=-0.048 Sum_probs=89.6
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCC-----------CcEEEEEeCChhHHHHHHHHhc-
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQT-----------GGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~-----------~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
+..-++.+.+++..++...+..+|+|- .||+|.+-+.....+... ...++++|+++.+..+|+.|+-
T Consensus 198 qfyTP~~Vv~lmv~l~~p~~~~~I~DP-acGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l 276 (530)
T 3ufb_A 198 EFYTPRPVVRFMVEVMDPQLGESVLDP-ACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL 276 (530)
T ss_dssp CCCCCHHHHHHHHHHHCCCTTCCEEET-TCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred eECCcHHHHHHHHHhhccCCCCEEEeC-CCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence 345677789999999988888899999 499998876666554332 2469999999999999999986
Q ss_pred -CCCCcEEEEEcchHHHh-hhc--cCCccEEEEcCCcC-------------------cHHHHHHHHHhcCC-------CC
Q 041509 89 -LDASHVEFVIGDAQSLL-LSH--FREADFVLIDCNLE-------------------NHEGVLRAVQAGNK-------PN 138 (211)
Q Consensus 89 -~~~~~V~~~~gda~e~l-~~l--~~~fD~VfiD~~~~-------------------~y~~~l~~~~~~L~-------pg 138 (211)
+. +.-.+.++|.+..- ... ..+||+|+.+.+.. .+..+++.+...|+ ||
T Consensus 277 hg~-~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g 355 (530)
T 3ufb_A 277 HGL-EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG 355 (530)
T ss_dssp HTC-SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred cCC-ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence 43 33467788886431 111 35899999986532 12345666766665 68
Q ss_pred cEEEEE--ecCCCCC
Q 041509 139 GAVVVG--YNAFRKG 151 (211)
Q Consensus 139 G~viv~--dn~~~~~ 151 (211)
|.+.++ +.++..+
T Consensus 356 Gr~avVlP~g~Lf~~ 370 (530)
T 3ufb_A 356 GRAAVVVPNGTLFSD 370 (530)
T ss_dssp CEEEEEEEHHHHHCC
T ss_pred ceEEEEecchhhhcc
Confidence 875433 4455443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00053 Score=60.59 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=55.7
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++.++||+ |++.|..|-.+++. +++|++||..|- ....+ ...+|+++.+|+.+..+. .+++|.|+.
T Consensus 209 l~~G~~vlDL-GAaPGGWT~~l~~r----g~~V~aVD~~~l-~~~l~-----~~~~V~~~~~d~~~~~~~-~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDL-GACPGGWTYQLVKR----NMWVYSVDNGPM-AQSLM-----DTGQVTWLREDGFKFRPT-RSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEE-TCTTCHHHHHHHHT----TCEEEEECSSCC-CHHHH-----TTTCEEEECSCTTTCCCC-SSCEEEEEE
T ss_pred CCCCCEEEEe-CcCCCHHHHHHHHC----CCEEEEEEhhhc-Chhhc-----cCCCeEEEeCccccccCC-CCCcCEEEE
Confidence 3567899999 99999999988763 789999997652 11111 136799999999887653 578999999
Q ss_pred cCCc
Q 041509 118 DCNL 121 (211)
Q Consensus 118 D~~~ 121 (211)
|...
T Consensus 277 Dm~~ 280 (375)
T 4auk_A 277 DMVE 280 (375)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 9764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00037 Score=59.19 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=39.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
.+...|||. +||+|.+++.++.. +.++++||+++++++.|+++++
T Consensus 234 ~~~~~vlD~-f~GsGt~~~~a~~~----g~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 234 FVGDVVLDP-FAGTGTTLIAAARW----GRRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp CTTCEEEET-TCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHHH
Confidence 567899999 89999988776642 6799999999999999999997
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00041 Score=65.17 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=68.6
Q ss_pred CeEEEEccccHHHHHHHHHHHcc-------C-CC--cEEEEEeC---ChhHHHHHHH-----------Hhc-------C-
Q 041509 42 QLMVVACANVANATTLALAAAAH-------Q-TG--GRVVCILR---RVEEYKLSKK-----------ILG-------L- 89 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~-------~-~~--g~v~tiE~---~~~~~~~Ar~-----------~~~-------~- 89 (211)
=+|+|+ |-|+|+..+....+.. . .. -+++++|. +++-+..|-. .++ +
T Consensus 68 ~~i~e~-gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 68 FVVAES-GFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEE-CCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred eEEEEe-CCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 479999 8999998887766542 0 12 46899999 6655543322 111 0
Q ss_pred ----C---CCcEEEEEcchHHHhhhc----cCCccEEEEcCCc-----Cc-HHHHHHHHHhcCCCCcEE
Q 041509 90 ----D---ASHVEFVIGDAQSLLLSH----FREADFVLIDCNL-----EN-HEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 90 ----~---~~~V~~~~gda~e~l~~l----~~~fD~VfiD~~~-----~~-y~~~l~~~~~~L~pgG~v 141 (211)
+ .-.+++..||+.+.++++ ...||.+|+|+-. +. -.++++.+.++++|||.+
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~ 215 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTL 215 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEE
Confidence 0 134778999999999987 3689999999742 22 277899999999986544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=60.21 Aligned_cols=121 Identities=10% Similarity=-0.092 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd 100 (211)
..++..-+|+...-+ ..+..+|||+ |||.|-.+-.++... ..+.++++|+.-++....+.. .....++..+.++
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~~~VLDL-GaAPGGWSQvAa~~~--~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~ 130 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLEGRVIDL-GCGRGGWCYYAAAQK--EVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDK 130 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEE-TCTTCHHHHHHHTST--TEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECS
T ss_pred ccccHHHHHHHHHHhCCCCCCCEEEEe-cCCCCHHHHHHHHhc--CCCcceeEEEeccCccccccc-CcCCCCeEEEecc
Confidence 344554455444332 3456689999 999999988877542 246788888764431101000 0011134445555
Q ss_pred hHHHhhhccCCccEEEEcCCcC----c---H--HHHHHHHHhcCCCC-cEEEEEecCCCC
Q 041509 101 AQSLLLSHFREADFVLIDCNLE----N---H--EGVLRAVQAGNKPN-GAVVVGYNAFRK 150 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~----~---y--~~~l~~~~~~L~pg-G~viv~dn~~~~ 150 (211)
+. ...-..++||+|+.|.... . + ...++.+.+.|+|| |.+++ -++.+
T Consensus 131 ~d-v~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~--KVf~p 187 (277)
T 3evf_A 131 TD-IHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV--KVLAP 187 (277)
T ss_dssp CC-TTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE--EESCT
T ss_pred ce-ehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE--EecCC
Confidence 42 2221257899999997433 1 1 13456777889999 88776 56664
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0009 Score=52.73 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=62.9
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||.+ | .|+|..++.++... +.+|++++.+++..+.+++. +....+.....+..+.+.+. .+.+
T Consensus 35 ~~~~g~~vlV~-Ga~ggiG~~~~~~~~~~---G~~V~~~~~~~~~~~~~~~~--g~~~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 35 RLSPGERVLIH-SATGGVGMAAVSIAKMI---GARIYTTAGSDAKREMLSRL--GVEYVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CCCTTCEEEET-TTTSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHTT--CCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCCCEEEEe-eCCChHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc--CCCEEeeCCcHHHHHHHHHHhCCCCC
Confidence 34567889999 7 57788877777664 57999999999888777542 21111111112233333222 2469
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.+|-... . ..++.+.+.|+|+|.++..
T Consensus 109 D~vi~~~g-~---~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 109 DVVLNSLA-G---EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp EEEEECCC-T---HHHHHHHHTEEEEEEEEEC
T ss_pred eEEEECCc-h---HHHHHHHHHhccCCEEEEE
Confidence 99986553 2 5678888889998877653
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=57.36 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=65.9
Q ss_pred hhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 37 AGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
...+.++||-+ |+|. |..++.+|++.. ..+|+++|.+++..+.|++. +...-+.....|..+.+.++ .+.+|+
T Consensus 187 ~~~~g~~VlV~-GaG~vG~~a~qlak~~G--a~~Vi~~~~~~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 187 KVTPASSFVTW-GAGAVGLSALLAAKVCG--ASIIIAVDIVESRLELAKQL--GATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp CCCTTCEEEEE-SCSHHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHc--CCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 44567899999 7764 888888988762 23799999999999998754 21111111112333333333 347999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||-.... ...++.+.+.|+++|.+++.
T Consensus 262 vid~~g~---~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 262 ALESTGS---PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEECSCC---HHHHHHHHHTEEEEEEEEEC
T ss_pred EEECCCC---HHHHHHHHHHHhcCCEEEEe
Confidence 8754432 25677888889998887764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=57.66 Aligned_cols=96 Identities=11% Similarity=-0.094 Sum_probs=67.3
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-c------cCCccE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-H------FREADF 114 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l------~~~fD~ 114 (211)
-+++|+| ||+|-.++.+..+- --.|.++|+++.+.+..+.|+. ...++++|+.++... + ...+|+
T Consensus 3 ~~vidLF-sG~GGlslG~~~aG---~~~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 3 LNVIDLF-SGVGGLSLGAARAG---FDVKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CEEEEET-CTTSHHHHHHHHHT---CEEEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CeEEEEc-cCcCHHHHHHHHCC---CcEEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 4699995 99999888887762 3457899999999999999865 346778888766321 1 368999
Q ss_pred EEEcCC---------------cC-cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 115 VLIDCN---------------LE-NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~---------------~~-~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+.+.+ +. .+.++++.+.. ++| . +++.+|+-
T Consensus 75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~-~~P-~-~~v~ENV~ 121 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSE-LQP-L-FFLAENVP 121 (376)
T ss_dssp EEECCCCCTTC-------CHHHHHHHHHHHHHHHH-HCC-S-EEEEEECT
T ss_pred EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHH-hCC-C-EEEEecch
Confidence 999864 11 23445555543 577 3 55568863
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=55.96 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=66.8
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-+ |+| +|..++.+|++. +.+|++++.+++..+.+++. +...-+.....|..+.+.+..+.+|.|
T Consensus 163 ~~~~g~~VlV~-GaG~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~l--Ga~~~i~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 163 DTRPGQWVVIS-GIGGLGHVAVQYARAM---GLRVAAVDIDDAKLNLARRL--GAEVAVNARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp TCCTTSEEEEE-CCSTTHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHT--TCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHc--CCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence 44677889989 765 599999999875 56999999999999988763 211111111123333333334589999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|...... +.++.+.+.|+|+|.+++.
T Consensus 237 id~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 237 LVTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 8665432 5677778888998887764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0074 Score=52.06 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=65.0
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc------hHHHhhh
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGD------AQSLLLS 107 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd------a~e~l~~ 107 (211)
+...+.++||-+ |+| +|..++.+|++. +. +|++++.+++..+.+++. + .+ .++..+ ..+.+..
T Consensus 167 ~~~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l--G-a~--~vi~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 167 GGVTLGHKVLVC-GAGPIGMVTLLVAKAM---GAAQVVVTDLSATRLSKAKEI--G-AD--LVLQISKESPQEIARKVEG 237 (356)
T ss_dssp HTCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHT--T-CS--EEEECSSCCHHHHHHHHHH
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh--C-CC--EEEcCcccccchHHHHHHH
Confidence 455678899999 765 488888888875 44 999999999998888753 2 12 222222 2222222
Q ss_pred c-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 108 H-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
. .+.+|+||-.... ...++.+.+.|+|+|.++..
T Consensus 238 ~~~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 238 QLGCKPEVTIECTGA---EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHTSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEE
Confidence 2 3579999855443 24567778889999988764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0028 Score=54.44 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=79.6
Q ss_pred CCCeEEEEccc------cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCcc
Q 041509 40 NAQLMVVACAN------VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gt------g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
...+|||+ |+ ..|. ..+.+-. +.++.|+++|++|-.. ..+ .++.||..+... .++||
T Consensus 109 ~gmrVLDL-GA~s~kg~APGS--~VLr~~~-p~g~~VVavDL~~~~s---------da~--~~IqGD~~~~~~--~~k~D 171 (344)
T 3r24_A 109 YNMRVIHF-GAGSDKGVAPGT--AVLRQWL-PTGTLLVDSDLNDFVS---------DAD--STLIGDCATVHT--ANKWD 171 (344)
T ss_dssp TTCEEEEE-SCCCTTSBCHHH--HHHHHHS-CTTCEEEEEESSCCBC---------SSS--EEEESCGGGEEE--SSCEE
T ss_pred CCCEEEeC-CCCCCCCCCCcH--HHHHHhC-CCCcEEEEeeCccccc---------CCC--eEEEcccccccc--CCCCC
Confidence 35789999 95 8887 2344444 3357999999987321 112 459999865432 58999
Q ss_pred EEEEcCCc------------Cc--HHHHHHHHHhcCCCCcEEEEEecCCCCCcee------cCCCcEEEeecCCcEEEEE
Q 041509 114 FVLIDCNL------------EN--HEGVLRAVQAGNKPNGAVVVGYNAFRKGSWR------SSGSKSQLLPIGEGLLVTR 173 (211)
Q Consensus 114 ~VfiD~~~------------~~--y~~~l~~~~~~L~pgG~viv~dn~~~~~~~~------~~~~~~v~lpig~Gl~v~~ 173 (211)
+|+.|... .. .+..++.+.+.|+|||.+++ . ++ .|.+. ...|..+. .
T Consensus 172 LVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV-K-VF-QGsg~~~L~~lrk~F~~VK----------~ 238 (344)
T 3r24_A 172 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV-K-IT-EHSWNADLYKLMGHFSWWT----------A 238 (344)
T ss_dssp EEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE-E-EC-SSSCCHHHHHHHTTEEEEE----------E
T ss_pred EEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE-E-Ee-cCCCHHHHHHHHhhCCeEE----------E
Confidence 99999422 11 25677778888999888876 4 33 33321 24555443 1
Q ss_pred EeccC-CCCccceEEeccccCC
Q 041509 174 IAAAS-ANKKSHWIVKVDKCTG 194 (211)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~ 194 (211)
+++.+ .+..+.+++.......
T Consensus 239 fK~ASRa~SsEvYLVG~gfKg~ 260 (344)
T 3r24_A 239 FVTNVNASSSEAFLIGANYLGK 260 (344)
T ss_dssp EEEGGGTTSSCEEEEEEEECSS
T ss_pred ECCCCCCCCeeEEEEeeeccCC
Confidence 22333 5578888888776654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.015 Score=50.18 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=67.3
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEE-----cchHHHhhhc
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVI-----GDAQSLLLSH 108 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-----gda~e~l~~l 108 (211)
+...+.++||-+ |+ ++|..++.+|++. +.+ |++++.+++..+.|++. . ...+.... .|..+.+.++
T Consensus 175 ~~~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l-~--~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 175 AGVRLGDPVLIC-GAGPIGLITMLCAKAA---GACPLVITDIDEGRLKFAKEI-C--PEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp HTCCTTCCEEEE-CCSHHHHHHHHHHHHT---TCCSEEEEESCHHHHHHHHHH-C--TTCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh-c--hhcccccccccchHHHHHHHHHH
Confidence 455678899999 65 4588888888875 455 99999999999999986 3 22233321 2333333333
Q ss_pred --cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 --FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|+||-..... ..++.+.+.|+++|.+++.
T Consensus 248 t~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 248 FGGIEPAVALECTGVE---SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp TSSCCCSEEEECSCCH---HHHHHHHHHSCTTCEEEEC
T ss_pred hCCCCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEE
Confidence 34799998544432 4577778889999988764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0054 Score=53.21 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-cc-CCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-HF-READFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l~-~~fD~VfiD 118 (211)
+.+|+|+ -||+|-.++.+..+-- ....|.++|+++.+.+..+.|+.. ..++++|+.++... +. ..+|+|+.+
T Consensus 2 ~~~v~dL-FaG~Gg~~~g~~~~G~-~~~~v~~~E~d~~a~~~~~~N~~~----~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 2 PLRVLEL-YSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEE-TCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCeEEEe-CcCccHHHHHHHHCCC-CceEEEEEeCCHHHHHHHHHhccc----cccccCCHHHccHhHcCcCCcCEEEEc
Confidence 3579999 5999999888876520 013799999999999999999762 23678998876532 12 279999998
Q ss_pred CC
Q 041509 119 CN 120 (211)
Q Consensus 119 ~~ 120 (211)
.+
T Consensus 76 pP 77 (343)
T 1g55_A 76 PP 77 (343)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0035 Score=55.05 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=66.4
Q ss_pred HhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch-HHHhhhc-cC-C
Q 041509 36 AAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA-QSLLLSH-FR-E 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda-~e~l~~l-~~-~ 111 (211)
+...+.++||-+ |+|. |..++.+|++.. ..+|+++|.+++..+.|++. +. +.+.....|. .+.+..+ .+ .
T Consensus 181 ~~~~~g~~VlV~-GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l--Ga-~~i~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 181 AGVKPGSHVYIA-GAGPVGRCAAAGARLLG--AACVIVGDQNPERLKLLSDA--GF-ETIDLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp TTCCTTCEEEEE-CCSHHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHTT--TC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc--CC-cEEcCCCcchHHHHHHHHhCCCC
Confidence 455678899999 7765 888888988762 24999999999998888742 22 2121112232 3333333 33 7
Q ss_pred ccEEEEcCCcCc-----------HHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLEN-----------HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~-----------y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+||-...... ....++.+.+.|+++|.+++.
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 999975443321 123577788888998887654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00043 Score=58.86 Aligned_cols=118 Identities=10% Similarity=-0.011 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHH--hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC-CcEEEEEc-
Q 041509 24 KEPNEAEFISALA--AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA-SHVEFVIG- 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~--~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~-~~V~~~~g- 99 (211)
.++..-+|+...- ...+..+|||+ ||+.|..+-.++... ....|+++|+...+...+... .... +-+.+..+
T Consensus 72 rSRAAfKL~ei~eK~~Lk~~~~VLDL-GaAPGGWsQvAa~~~--gv~sV~GvdvG~d~~~~pi~~-~~~g~~ii~~~~~~ 147 (282)
T 3gcz_A 72 VSRGSAKLRWMEERGYVKPTGIVVDL-GCGRGGWSYYAASLK--NVKKVMAFTLGVQGHEKPIMR-TTLGWNLIRFKDKT 147 (282)
T ss_dssp SSTHHHHHHHHHHTTSCCCCEEEEEE-TCTTCHHHHHHHTST--TEEEEEEECCCCTTSCCCCCC-CBTTGGGEEEECSC
T ss_pred ecHHHHHHHHHHHhcCCCCCCEEEEe-CCCCCHHHHHHHHhc--CCCeeeeEEeccCcccccccc-ccCCCceEEeeCCc
Confidence 4444444444332 23566689999 899999988877543 246789999876533222110 1112 22444333
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------cH--HHHHHHHHhcCCCC--cEEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------NH--EGVLRAVQAGNKPN--GAVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------~y--~~~l~~~~~~L~pg--G~viv~dn~~~~ 150 (211)
|..++ ..+++|+|+.|.... ++ ...++.+.+.|+|| |.+++ -++.+
T Consensus 148 dv~~l---~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~--KvF~p 204 (282)
T 3gcz_A 148 DVFNM---EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI--KVLCP 204 (282)
T ss_dssp CGGGS---CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE--EESCC
T ss_pred chhhc---CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE--EEecC
Confidence 33221 257999999997543 11 23466667789998 87765 45553
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0034 Score=54.10 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=64.9
Q ss_pred HHhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cC
Q 041509 35 LAAGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FR 110 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~ 110 (211)
.+...+.++||-+ |+| .|..++.+|++. +. +|+++|.+++..+.+++. +...-+.....|..+.+.++ ..
T Consensus 161 ~~~~~~g~~VlV~-GaG~vG~~a~qla~~~---Ga~~Vi~~~~~~~~~~~~~~l--Ga~~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 161 LANIKLGDTVCVI-GIGPVGLMSVAGANHL---GAGRIFAVGSRKHCCDIALEY--GATDIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp HTTCCTTCCEEEE-CCSHHHHHHHHHHHTT---TCSSEEEECCCHHHHHHHHHH--TCCEEECGGGSCHHHHHHHHTTTC
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh--CCceEEcCCCcCHHHHHHHHcCCC
Confidence 3455678899999 765 488888888765 44 899999999999888764 21111111123344443333 23
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+|+||-..... ..++.+.+.|+|+|.++.+
T Consensus 235 g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CEEEEEECSSCT---THHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCCh---HHHHHHHHHHhcCCEEEEe
Confidence 799998544432 3566677778888887764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0063 Score=52.93 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=67.0
Q ss_pred HHhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh---c-
Q 041509 35 LAAGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS---H- 108 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~---l- 108 (211)
.+...+.++||-+ |+| +|..++.+|++. +. +|++++.+++..+.|++. |...-+.....|..+.+.+ +
T Consensus 177 ~~~~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l--Ga~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 177 LSGIKAGSTVAIL-GGGVIGLLTVQLARLA---GATTVILSTRQATKRRLAEEV--GATATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HHTCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCSEEEEECSCHHHHHHHHHH--TCSEEECTTSSCHHHHHHSTTSSS
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHc--CCCEEECCCCcCHHHHHHhhhhcc
Confidence 3456678899999 654 488888888875 44 999999999999988764 2111111112344444443 2
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+.+|+||-.... ...++.+.+.|+++|.++++
T Consensus 251 ~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIECAGV---AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence 3489998854432 24677778888998887764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0026 Score=56.57 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=45.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC----CC-CcEEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL----DA-SHVEFVI 98 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~----~~-~~V~~~~ 98 (211)
.+...++|+ |+++|+.|++++.......++|+++|++|+..+..++|++. .. ++|+++.
T Consensus 225 ~~~~~viDv-GAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~ 288 (409)
T 2py6_A 225 SDSEKMVDC-GASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 288 (409)
T ss_dssp CSSCEEEEE-TCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCCEEEEC-CCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence 567889999 99999999998843322248999999999999999998862 13 5666553
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.023 Score=48.72 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=64.6
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-c---
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-F--- 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~--- 109 (211)
+...+.++||-+ |+| +|..++.+|++. +.+|++++.+++..+.+++. +...-+.... .+..+.+.+. .
T Consensus 164 ~~~~~g~~VlV~-GaG~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~l--Ga~~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 164 AGVQLGTTVLVI-GAGPIGLVSVLAAKAY---GAFVVCTARSPRRLEVAKNC--GADVTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp HTCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHT--TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHh--CCCEEEcCcccccHHHHHHHHhcccc
Confidence 455678899999 655 588888888875 56799999999999888753 2111111110 2222222222 2
Q ss_pred -CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 110 -READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 110 -~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.+|+||-.... ...++.+.+.|+|+|.++..
T Consensus 238 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 238 GDLPNVTIDCSGN---EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 579999855443 24567778888999987764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0052 Score=52.41 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=66.5
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCc
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~f 112 (211)
+...+.++||-+ |+ |+|..++.++.+. +.+|++++.+++..+.+.+.+. ...-+.....+..+.+.+. .+.+
T Consensus 145 ~~~~~g~~vlI~-Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 145 GQPKNGETVVIS-GAAGAVGSVAGQIARLK---GCRVVGIAGGAEKCRFLVEELG-FDGAIDYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp TCCCTTCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHTTC-CSEEEETTTSCHHHHHHHHCTTCE
T ss_pred cCCCCCCEEEEE-CCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHcC-CCEEEECCCHHHHHHHHHhcCCCc
Confidence 455678899999 75 7888888888764 6799999999998888844333 1111111112333333332 4579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-.... ..++.+.+.|+++|.++++
T Consensus 220 d~vi~~~g~----~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 220 DVFFDNVGG----EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp EEEEESSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred eEEEECCCc----chHHHHHHHHhhCCEEEEE
Confidence 988755442 4688888999998887764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.018 Score=49.10 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=66.8
Q ss_pred HhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
+...+.++||-+ |+|. |.+++.+++.+ .+.+|++++.+++..+.+++.-. ..-+.....|..+.+.++ ...+
T Consensus 159 ~~~~~g~~VlV~-GaG~~g~~a~~~a~~~--~g~~Vi~~~~~~~r~~~~~~~Ga--~~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 159 SGVKPGDWQVIF-GAGGLGNLAIQYAKNV--FGAKVIAVDINQDKLNLAKKIGA--DVTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp HTCCTTCEEEEE-CCSHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHHHTTC--SEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred cCCCCCCEEEEE-cCCCccHHHHHHHHHh--CCCEEEEEECcHHHhhhhhhcCC--eEEEeCCCCCHHHHhhhhcCCCCc
Confidence 345667889999 7664 45555555544 36899999999998888876422 223444445555555444 3467
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.++.+.... ..++...+.|+++|.+++.
T Consensus 234 d~~~~~~~~~---~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 234 QSAIVCAVAR---IAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEEECCSCH---HHHHHHHHTEEEEEEEEEC
T ss_pred eEEEEeccCc---chhheeheeecCCceEEEE
Confidence 8888776543 5677778889998887664
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0055 Score=53.33 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=66.3
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE--EcchHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV--IGDAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~--~gda~e~l~~l-~~~ 111 (211)
+...+.++||-+ |+| +|..++.+|++.. ..+|+++|.+++..+.|++. +...-+... ..+..+.+.++ .+.
T Consensus 189 ~~~~~g~~VlV~-GaG~vG~~a~q~a~~~G--a~~Vi~~~~~~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 189 AKVEPGSNVAIF-GLGTVGLAVAEGAKTAG--ASRIIGIDIDSKKYETAKKF--GVNEFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp TCCCTTCCEEEE-CCSHHHHHHHHHHHHHT--CSCEEEECSCTTHHHHHHTT--TCCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHc--CCcEEEccccCchhHHHHHHHhcCCC
Confidence 344567889999 654 6888888888762 24899999999999988753 211111111 12333444333 458
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|+||-.... ...++.+.+.|+++ |.++++-
T Consensus 264 ~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 264 VDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp BSEEEECSCC---HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCEEEECCCC---HHHHHHHHHHhhccCCEEEEEc
Confidence 9999854443 35678888899996 8776643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.008 Score=52.11 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=64.5
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcE-EEEE--cchHHHhhhc-cC
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHV-EFVI--GDAQSLLLSH-FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~--gda~e~l~~l-~~ 110 (211)
...+.++||-+ |+| +|..++.+|++. +. +|++++.+++..+.+++. +. +.+ .... .+..+.+.++ .+
T Consensus 189 ~~~~g~~VlV~-GaG~vG~~a~qla~~~---Ga~~Vi~~~~~~~~~~~~~~l--Ga-~~vi~~~~~~~~~~~~~~~~~~~ 261 (374)
T 1cdo_A 189 KVEPGSTCAVF-GLGAVGLAAVMGCHSA---GAKRIIAVDLNPDKFEKAKVF--GA-TDFVNPNDHSEPISQVLSKMTNG 261 (374)
T ss_dssp CCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHHT--TC-CEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHh--CC-ceEEeccccchhHHHHHHHHhCC
Confidence 34567889999 654 588888888875 45 899999999999988753 21 211 1100 1233333332 35
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
.+|+||-.... ...++.+.+.|+++ |.+++.
T Consensus 262 g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 262 GVDFSLECVGN---VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp CBSEEEECSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEE
Confidence 89999854433 24678888899998 887764
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.019 Score=48.94 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=65.9
Q ss_pred HHhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 35 LAAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
.+...+.++||-. |+ +.|..++.+|+++. ...+++++.+++..+.|++. |....+.....|..+....+ ...
T Consensus 155 ~~~~~~g~~VlV~-GaG~vG~~aiq~ak~~G--~~~vi~~~~~~~k~~~a~~l--Ga~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 155 LAQGCENKNVIII-GAGTIGLLAIQCAVALG--AKSVTAIDISSEKLALAKSF--GAMQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp HTTCCTTSEEEEE-CCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHT--TCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred HhccCCCCEEEEE-CCCCcchHHHHHHHHcC--CcEEEEEechHHHHHHHHHc--CCeEEEeCCCCCHHHHHHhhcccCC
Confidence 3455678899988 65 46777777887763 35789999999999988764 21222222223444444333 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+||-.... ...++.+.++|+++|.+++.
T Consensus 230 ~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 230 NQLILETAGV---PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SEEEEECSCS---HHHHHHHHHHCCTTCEEEEC
T ss_pred cccccccccc---cchhhhhhheecCCeEEEEE
Confidence 7877654443 25677778889998887763
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.018 Score=50.09 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=63.9
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-+ |+| +|..++.+|++. +.+|++++.+++..+.+++. . .+. ++.-+-.+.+..+.+.+|+|
T Consensus 191 ~~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~Vi~~~~~~~~~~~a~~l-G--a~~--vi~~~~~~~~~~~~~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGKKVGVV-GIGGLGHMGIKLAHAM---GAHVVAFTTSEAKREAAKAL-G--ADE--VVNSRNADEMAAHLKSFDFI 261 (369)
T ss_dssp TCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHH-T--CSE--EEETTCHHHHHTTTTCEEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc-C--CcE--EeccccHHHHHHhhcCCCEE
Confidence 45667899999 765 588888888875 56899999999999988762 2 121 22222223333334689999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|-..... ..++.+.+.|+|+|.++..
T Consensus 262 id~~g~~---~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 262 LNTVAAP---HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EECCSSC---CCHHHHHTTEEEEEEEEEC
T ss_pred EECCCCH---HHHHHHHHHhccCCEEEEe
Confidence 8554433 2356667788888877654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0055 Score=52.19 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=64.0
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-cCCc
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~~~f 112 (211)
...+.++||-+ |+ |+|..++.++.+. +.+|++++.+++..+.+++ +. ....+.... .+..+.+... .+.+
T Consensus 142 ~~~~g~~vlV~-Ga~ggiG~~~~~~~~~~---G~~V~~~~~~~~~~~~~~~-~g-~~~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 142 GVKGGETVLVS-AAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKIAYLKQ-IG-FDAAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CCCSSCEEEEE-STTBHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHH-TT-CSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCCCEEEEe-cCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-cC-CcEEEecCCHHHHHHHHHHHhCCCC
Confidence 44567889999 75 7888777777664 6799999999998888843 32 111111111 2333333322 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++|-.+.. ..++.+.+.|+++|.+++.
T Consensus 216 d~vi~~~g~----~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 216 DCYFDNVGG----EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp EEEEESSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred eEEEECCCh----HHHHHHHHHHhcCCEEEEE
Confidence 999866553 3578888899998887764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0087 Score=51.88 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=64.8
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcE-EEEE--cchHHHhhhc-cC
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHV-EFVI--GDAQSLLLSH-FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~--gda~e~l~~l-~~ 110 (211)
...+.++||-+ |+| +|..++.+|+++ +. +|++++.+++..+.|++. +. +.+ .... .+..+.+.++ .+
T Consensus 188 ~~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l--Ga-~~vi~~~~~~~~~~~~i~~~t~g 260 (373)
T 1p0f_A 188 KVTPGSTCAVF-GLGGVGFSAIVGCKAA---GASRIIGVGTHKDKFPKAIEL--GA-TECLNPKDYDKPIYEVICEKTNG 260 (373)
T ss_dssp CCCTTCEEEEE-CCSHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHHHT--TC-SEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHHc--CC-cEEEecccccchHHHHHHHHhCC
Confidence 44567899999 654 588888888876 44 899999999999988753 21 211 1100 1233333333 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
.+|+||-.... ...++.+.+.|+++ |.++..
T Consensus 261 g~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 261 GVDYAVECAGR---IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp CBSEEEECSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEE
Confidence 89999854432 35678888899998 887764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0072 Score=52.34 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=66.1
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l-~~~ 111 (211)
+...+.++||-+ | .++|..++.+|.+. +.+|++++.+++..+.+++ +. .+.+ .....+..+.+... .+.
T Consensus 159 ~~~~~g~~VlV~-Ga~G~iG~~~~q~a~~~---Ga~Vi~~~~~~~~~~~~~~-~G--a~~~~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 159 GGLSEGKKVLVT-AAAGGTGQFAMQLSKKA---KCHVIGTCSSDEKSAFLKS-LG--CDRPINYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp TCCCTTCEEEET-TTTBTTHHHHHHHHHHT---TCEEEEEESSHHHHHHHHH-TT--CSEEEETTTSCHHHHHHHHCTTC
T ss_pred cCCCCCCEEEEe-CCCcHHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHH-cC--CcEEEecCChhHHHHHHHhcCCC
Confidence 455678899999 7 68899888888875 5699999999998888876 22 1211 11112333333332 357
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+||-.... ..++.+.+.|+++|.+++.
T Consensus 232 ~D~vid~~g~----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 232 VDVVYESVGG----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EEEEEECSCT----HHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCH----HHHHHHHHHHhcCCEEEEE
Confidence 9999855443 4677788888888877664
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=51.22 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=64.4
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
...+.++||-+ |+| +|..++.+|++. +. +|++++.+++..+.+++. +...-+.... .+..+.+.++ .+.
T Consensus 187 ~~~~g~~VlV~-GaG~vG~~avqla~~~---Ga~~Vi~~~~~~~~~~~~~~l--Ga~~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 187 KLEPGSVCAVF-GLGGVGLAVIMGCKVA---GASRIIGVDINKDKFARAKEF--GATECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp CCCTTCEEEEE-CCSHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHHHH--TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHc--CCceEeccccccccHHHHHHHHhCCC
Confidence 34567889999 654 588888888876 44 899999999999988753 2111111100 1233333333 348
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
+|+||-.... ...++.+.+.|+++ |.+++.
T Consensus 261 ~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 261 VDYSFECIGN---VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp BSEEEECSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCCc---HHHHHHHHHhhccCCcEEEEE
Confidence 9999854433 24677888899998 887764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=51.85 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=62.2
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+.++||-+ |+ ++|..++.+|++. +. +|++++.+++..+.|++. |...-+.....|..+.+.++ ...+|
T Consensus 211 ~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~~~~l--Ga~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 211 IRPGDNVVIL-GGGPIGLAAVAILKHA---GASKVILSEPSEVRRNLAKEL--GADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp CCTTCEEEEE-CCSHHHHHHHHHHHHT---TCSEEEEECSCHHHHHHHHHH--TCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4567889989 64 4588888888875 44 999999999999998764 21111111113444444333 33799
Q ss_pred EEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+||-..... .+...++.+.+.++++|.++++
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 998544433 2233444443555999988764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.014 Score=49.95 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=65.6
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
...+.++||-+ |+| +|..++.+|++.. +.+|+++|.+++..+.+++. | .+.+--...+..+.+.++ ...+|
T Consensus 168 ~~~~g~~vlv~-GaG~vG~~a~qla~~~g--~~~Vi~~~~~~~~~~~~~~l--G-a~~~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVI-GVGGLGHVGIQILRAVS--AARVIAVDLDDDRLALAREV--G-ADAAVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEE-CCSHHHHHHHHHHHHHC--CCEEEEEESCHHHHHHHHHT--T-CSEEEECSTTHHHHHHHHHGGGCEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc--C-CCEEEcCCCcHHHHHHHHhCCCCCe
Confidence 45677889999 654 4888888888762 57999999999999988763 2 122111112333333333 34899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+||-.... ...++.+.+.|+++|.++++
T Consensus 242 ~v~d~~G~---~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 242 AVFDFVGA---QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEESSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 98854443 24677778888898887764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.01 Score=51.50 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=64.4
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcE-EEEE--cchHHHhhhc-cC
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHV-EFVI--GDAQSLLLSH-FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~--gda~e~l~~l-~~ 110 (211)
...+.++||-+ |+| +|..++.+|+++ +. +|++++.+++..+.|++. +. +.+ .... .+..+.+.++ .+
T Consensus 192 ~~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l--Ga-~~vi~~~~~~~~~~~~v~~~~~~ 264 (376)
T 1e3i_A 192 KVTPGSTCAVF-GLGCVGLSAIIGCKIA---GASRIIAIDINGEKFPKAKAL--GA-TDCLNPRELDKPVQDVITELTAG 264 (376)
T ss_dssp CCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHHT--TC-SEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHh--CC-cEEEccccccchHHHHHHHHhCC
Confidence 34567889999 654 588888888875 44 899999999999988753 21 211 1100 1233333332 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
.+|+||-.... ...++.+.+.|+++ |.+++.
T Consensus 265 g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 265 GVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp CBSEEEESSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred CccEEEECCCC---HHHHHHHHHHhhcCCCEEEEE
Confidence 89999854432 25678888899998 887764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0046 Score=52.64 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=65.7
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .++|..++.++++. +.+|++++.+++..+.+++. +...-+.....+..+.+.++ ...+
T Consensus 137 ~~~~g~~VlV~-Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~~--Ga~~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 137 QVKPGEIILFH-AAAGGVGSLACQWAKAL---GAKLIGTVSSPEKAAHAKAL--GAWETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp CCCTTCEEEES-STTSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCCCEEEEE-cCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc--CCCEEEeCCCccHHHHHHHHhCCCCc
Confidence 34567889998 6 57888888888875 57999999999999888753 21111111112333333333 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+||-.... +.++.+.+.|+++|.+++.-
T Consensus 211 Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 211 PVVYDGVGQ----DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence 988755443 45677788899988877643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.43 E-value=0.01 Score=51.50 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=63.6
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcE-EEEE--cchHHHhhhc-cC
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHV-EFVI--GDAQSLLLSH-FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~--gda~e~l~~l-~~ 110 (211)
...+.++||-+ |+| +|..++.+|++. +. +|++++.+++..+.+++. +. +.+ .... .+..+.+.++ .+
T Consensus 188 ~~~~g~~VlV~-GaG~vG~~a~qla~~~---Ga~~Vi~~~~~~~~~~~~~~l--Ga-~~vi~~~~~~~~~~~~~~~~~~~ 260 (374)
T 2jhf_A 188 KVTQGSTCAVF-GLGGVGLSVIMGCKAA---GAARIIGVDINKDKFAKAKEV--GA-TECVNPQDYKKPIQEVLTEMSNG 260 (374)
T ss_dssp CCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHHT--TC-SEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHh--CC-ceEecccccchhHHHHHHHHhCC
Confidence 34567889999 654 488888888875 44 899999999999988742 21 211 1100 1233333333 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
.+|+||-.... ...++.+.+.|+++ |.+++.
T Consensus 261 g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 261 GVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp CBSEEEECSCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred CCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEe
Confidence 89999754433 24577778888998 887653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0045 Score=52.84 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=64.7
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .+.|..++.++++. +.+|++++.+++..+.+++. . ...-+.....+..+.+.+. ...+
T Consensus 145 ~~~~g~~vlV~-Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~~-g-a~~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 145 HVKKGDYVLLF-AAAGGVGLILNQLLKMK---GAHTIAVASTDEKLKIAKEY-G-AEYLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CCCTTCEEEES-STTBHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHT-T-CSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred cCCCCCEEEEE-CCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc-C-CcEEEeCCCchHHHHHHHHhCCCCc
Confidence 34567889999 6 57888888888775 67999999999988888763 2 1111111112333333333 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+||-.... ..++.+.+.|+++|.++.+-
T Consensus 219 D~vid~~g~----~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 219 DASFDSVGK----DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence 998855543 45667777888888877643
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0033 Score=53.76 Aligned_cols=117 Identities=12% Similarity=-0.038 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC-CcEEEEEc-
Q 041509 24 KEPNEAEFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA-SHVEFVIG- 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~-~~V~~~~g- 99 (211)
.++..-+|+...-+ ..+.++|||+ ||+.|-++-.+++..+ ...|+++|+...+....+. ..... +-+.+..+
T Consensus 63 rSRaa~KL~ei~ek~l~~~g~~vlDL-GaaPGgWsqva~~~~g--v~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~ 138 (300)
T 3eld_A 63 VSRGAAKIRWLHERGYLRITGRVLDL-GCGRGGWSYYAAAQKE--VMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKS 138 (300)
T ss_dssp SSTTHHHHHHHHHHTSCCCCEEEEEE-TCTTCHHHHHHHTSTT--EEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSC
T ss_pred cchHHHHHHHHHHhCCCCCCCEEEEc-CCCCCHHHHHHHHhcC--CceeeeEEecccccccccc-ccccCCceEEeecCc
Confidence 44444444433322 2356789999 8999999998886432 3578899986532111000 00011 22444433
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------cH--HHHHHHHHhcCCCC-cEEEEEecCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------NH--EGVLRAVQAGNKPN-GAVVVGYNAFR 149 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------~y--~~~l~~~~~~L~pg-G~viv~dn~~~ 149 (211)
|..++ ..+++|+|+.|.... ++ ...++.+...|+|| |.+++ . +|.
T Consensus 139 di~~l---~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~-K-vF~ 193 (300)
T 3eld_A 139 NVFTM---PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCV-K-VLA 193 (300)
T ss_dssp CTTTS---CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE-E-ESS
T ss_pred eeeec---CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE-E-ecc
Confidence 22211 156899999997543 11 34467777889998 87766 3 555
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=54.33 Aligned_cols=101 Identities=11% Similarity=-0.068 Sum_probs=62.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHH--ccCCCcEEEEEeC--ChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAA--AHQTGGRVVCILR--RVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a--~~~~~g~v~tiE~--~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l~~~f 112 (211)
..+..+|||+ ||+.|-.+.++++. .....|.++++|. .|-.. .....+-++|+.| |..+. . ..++
T Consensus 71 ikpg~~VVDL-GaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~~~Gv~~i~~~~G~Df~~~-~--~~~~ 140 (269)
T 2px2_A 71 VQPIGKVVDL-GCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------QSYGWNIVTMKSGVDVFYK-P--SEIS 140 (269)
T ss_dssp CCCCEEEEEE-TCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------CSTTGGGEEEECSCCGGGS-C--CCCC
T ss_pred CCCCCEEEEc-CCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------cCCCceEEEeeccCCccCC-C--CCCC
Confidence 3457789999 99999999888875 2111356666662 22100 0000133567668 99863 2 4589
Q ss_pred cEEEEcCCcC------cH---HHHHHHHHhcCCCCc-EEEEEecCCCC
Q 041509 113 DFVLIDCNLE------NH---EGVLRAVQAGNKPNG-AVVVGYNAFRK 150 (211)
Q Consensus 113 D~VfiD~~~~------~y---~~~l~~~~~~L~pgG-~viv~dn~~~~ 150 (211)
|+|+.|.... +. ...++.+.+.|+||| .+++ =+|.+
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv--KVFqg 186 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI--KILCP 186 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE--EESCT
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE--EECCC
Confidence 9999996432 11 225777778899998 6665 45554
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0096 Score=51.09 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=64.6
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE-EcchHHHhhhc-cCCc
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV-IGDAQSLLLSH-FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~-~gda~e~l~~l-~~~f 112 (211)
...+.++||-+ |+ |+|..++.++.+. +.+|++++.+++..+.+++. +....+... ..+..+.+.+. .+.+
T Consensus 166 ~~~~g~~vlV~-Ga~ggiG~~~~~~a~~~---Ga~V~~~~~~~~~~~~~~~~--g~~~~~d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 166 NLMAGHWVAIS-GAAGGLGSLAVQYAKAM---GYRVLGIDGGEGKEELFRSI--GGEVFIDFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TCCTTCEEEEE-TTTSHHHHHHHHHHHHT---TCEEEEEECSTTHHHHHHHT--TCCEEEETTTCSCHHHHHHHHHTSCE
T ss_pred CCCCCCEEEEE-CCCchHHHHHHHHHHHC---CCcEEEEcCCHHHHHHHHHc--CCceEEecCccHhHHHHHHHHhCCCC
Confidence 34567889999 76 6888888887764 67999999999888877652 211111111 12333333322 2379
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-.... ...++.+.+.|+++|.++..
T Consensus 240 D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 240 HGVINVSVS---EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEEECSSC---HHHHHHHTTSEEEEEEEEEC
T ss_pred CEEEECCCc---HHHHHHHHHHHhcCCEEEEE
Confidence 999866543 25678888899998887654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0053 Score=52.59 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=63.6
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
+...+.++||-+ |+ ++|..++.++++. +.+|++++.+++..+.+++. . ...-+.....+..+.+.++ ...
T Consensus 140 ~~~~~g~~VlV~-Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~l-g-a~~~~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 140 LNLQRNDVLLVN-ACGSAIGHLFAQLSQIL---NFRLIAVTRNNKHTEELLRL-G-AAYVIDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp SCCCTTCEEEES-STTSHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHHHH-T-CSEEEETTTSCHHHHHHHHTTTSC
T ss_pred cccCCCCEEEEe-CCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhC-C-CcEEEeCCcccHHHHHHHHhCCCC
Confidence 345667899999 65 5888888888875 67999999999999888863 2 1111111112333333333 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+||-...... .....+.|+++|.++.+-
T Consensus 214 ~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 214 ADAAIDSIGGPD----GNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEEESSCHHH----HHHHHHTEEEEEEEEECC
T ss_pred CcEEEECCCChh----HHHHHHHhcCCCEEEEEe
Confidence 998875544322 233447889988877643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.31 E-value=0.026 Score=48.67 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=67.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
..+++|+ .||+|-.++.+..+- ...+.++|+|+.+.+..+.|+.... ++|+.++.......+|+|+.+.+
T Consensus 11 ~~~~~dL-FaG~Gg~~~g~~~aG---~~~v~~~e~d~~a~~t~~~N~~~~~------~~Di~~~~~~~~~~~D~l~~gpP 80 (327)
T 2c7p_A 11 GLRFIDL-FAGLGGFRLALESCG---AECVYSNEWDKYAQEVYEMNFGEKP------EGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TCEEEEE-TCTTTHHHHHHHHTT---CEEEEEECCCHHHHHHHHHHHSCCC------BSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCcEEEE-CCCcCHHHHHHHHCC---CeEEEEEeCCHHHHHHHHHHcCCCC------cCCHHHcCHhhCCCCCEEEECCC
Confidence 4679999 599998888877642 3568999999999999999987321 68888876544457999998731
Q ss_pred ---------------cC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 ---------------LE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ---------------~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .+.++++.+.. ++| - +++.+|+-
T Consensus 81 CQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~-~~P-~-~~~~ENV~ 122 (327)
T 2c7p_A 81 CQAFSISGKQKGFEDSRGTLFFDIARIVRE-KKP-K-VVFMENVK 122 (327)
T ss_dssp CTTTCTTSCCCGGGSTTSCHHHHHHHHHHH-HCC-S-EEEEEEEG
T ss_pred CCCcchhcccCCCcchhhHHHHHHHHHHHh-ccC-c-EEEEeCcH
Confidence 11 24555655544 578 3 55669864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.009 Score=51.27 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=64.6
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .++|..++.+|++. +.+|++++.+++..+.+++. +...-+... .+..+.+.+. ...+
T Consensus 156 ~~~~g~~VlV~-Gasg~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~~--ga~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 156 QLRAGETVLVL-GAAGGIGTAAIQIAKGM---GAKVIAVVNRTAATEFVKSV--GADIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CCCTTCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHH--TCSEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCCCEEEEE-CCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhc--CCcEEecCc-hhHHHHHHHHhCCCCc
Confidence 34567889999 6 47888888888875 67999999999999888864 211111111 3343433333 2379
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-..... .++.+.+.|+++|.++++
T Consensus 229 Dvvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 229 DMVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred eEEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 9998655432 466777888998887764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.018 Score=50.23 Aligned_cols=103 Identities=13% Similarity=0.020 Sum_probs=65.3
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc-hHHHhhhc-c-CC
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD-AQSLLLSH-F-RE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd-a~e~l~~l-~-~~ 111 (211)
+...+.++||-+ |+| +|..++.+|+++. ..+|+++|.+++..+.|++. |. +.|.....+ ..+.+.++ . ..
T Consensus 181 ~~~~~g~~VlV~-GaG~vG~~aiqlAk~~G--a~~Vi~~~~~~~~~~~a~~l--Ga-~~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 181 AGVGPGSTVYVA-GAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQ--GF-EIADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp TTCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHT--TC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHc--CC-cEEccCCcchHHHHHHHHhCCCC
Confidence 345677899999 754 4888888888762 23899999999999988753 21 211111112 23333333 2 47
Q ss_pred ccEEEEcCCcCc------------HHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLEN------------HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~------------y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+||-...... ....++.+.+.|+++|.+++.
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 999975443221 124677788888998887664
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0057 Score=52.56 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=43.1
Q ss_pred CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-----------------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 91 ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-----------------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-----------------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+..++++||+.+.++.+ .++||+||+|.+-. .+.+.++++.++|+|+|.+++.
T Consensus 12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 467899999999988766 56899999997531 1466778888999998887775
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0079 Score=51.27 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=63.5
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .|+|..++.++... +.+|++++.+++..+.+++. . ....+.....+..+.+.+. ...+
T Consensus 142 ~~~~g~~vlV~-Ga~ggiG~~~~~~a~~~---G~~Vi~~~~~~~~~~~~~~~-g-~~~~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 142 KVKPGDYVLIH-AAAGGMGHIMVPWARHL---GATVIGTVSTEEKAETARKL-G-CHHTINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp CCCTTCEEEET-TTTSTTHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHH-T-CSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCCCCEEEEE-CCccHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc-C-CCEEEECCCHHHHHHHHHHhCCCCC
Confidence 34567889999 7 57888888888764 67999999999888888753 2 1111111112223333222 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++|-.... ..++.+.+.|+++|.++..
T Consensus 216 d~vi~~~g~----~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 216 DVVYDSIGK----DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEEECSCT----TTHHHHHHTEEEEEEEEEC
T ss_pred eEEEECCcH----HHHHHHHHhhccCCEEEEE
Confidence 999865543 4567778888888877664
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.007 Score=51.41 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=63.9
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .|+|..++.++.+. +.+|++++.+++..+.+++. . ....+.....+..+.+.+. ...+
T Consensus 137 ~~~~g~~vlV~-Ga~ggiG~~~~~~a~~~---G~~V~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 137 EIKPDEQFLFH-AAAGGVGLIACQWAKAL---GAKLIGTVGTAQKAQSALKA-G-AWQVINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp CCCTTCEEEES-STTBHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHH-T-CSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCCCEEEEE-CCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc-C-CCEEEECCCccHHHHHHHHhCCCCc
Confidence 34567889999 7 67888888887765 57999999999988888763 2 1111111112222333222 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|++|-... . ..++.+.+.|+++|.++..-
T Consensus 211 D~vi~~~g-~---~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 211 RVVYDSVG-R---DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEEECSC-G---GGHHHHHHTEEEEEEEEECC
T ss_pred eEEEECCc-h---HHHHHHHHHhcCCCEEEEEe
Confidence 99986665 2 45677788888888876643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0074 Score=51.55 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=65.2
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-cCCc
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~~~f 112 (211)
...+.++||-+ |+ |+|..++.++.+. +.+|++++.+++..+.+++.+. ....+.... .+..+.+... .+.+
T Consensus 152 ~~~~g~~vlI~-Ga~g~iG~~~~~~a~~~---G~~V~~~~~~~~~~~~~~~~~g-~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 152 SPKEGETVYVS-AASGAVGQLVGQLAKMM---GCYVVGSAGSKEKVDLLKTKFG-FDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp CCCTTCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHTSC-CSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CCCCCCEEEEE-CCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHcC-CceEEecCCHHHHHHHHHHHhCCCC
Confidence 44567889999 75 7888888888764 5799999999998888874432 111111111 1333333332 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-.... ..++.+.+.|+++|.+++.
T Consensus 227 d~vi~~~g~----~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 227 DIYFENVGG----KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EEEEESSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred cEEEECCCH----HHHHHHHHHHhcCCEEEEE
Confidence 999865542 4678888899998887764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=50.50 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=64.4
Q ss_pred CCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 40 NAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
+.++||-+ | .++|..++.+|+++. +.+|++++.+++..+.+++. . .+.+--...+..+.+.++ .+.+|+||
T Consensus 171 ~g~~VlV~-Ga~G~vG~~a~qlak~~~--g~~Vi~~~~~~~~~~~~~~l-G--ad~vi~~~~~~~~~v~~~~~~g~Dvvi 244 (363)
T 4dvj_A 171 AAPAILIV-GGAGGVGSIAVQIARQRT--DLTVIATASRPETQEWVKSL-G--AHHVIDHSKPLAAEVAALGLGAPAFVF 244 (363)
T ss_dssp SEEEEEEE-STTSHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHT-T--CSEEECTTSCHHHHHHTTCSCCEEEEE
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHc-C--CCEEEeCCCCHHHHHHHhcCCCceEEE
Confidence 45679988 6 567888888888752 67999999999999888762 2 121110012333333333 35799887
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-.... ...++.+.+.|+++|.++++.
T Consensus 245 d~~g~---~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 245 STTHT---DKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ECSCH---HHHHHHHHHHSCTTCEEEECS
T ss_pred ECCCc---hhhHHHHHHHhcCCCEEEEEC
Confidence 44332 246778888899999988763
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0088 Score=51.76 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=64.1
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l--~~~ 111 (211)
+...+.++||-+ |+| +|..++.+|++. +.+|++++.+++..+.+++. +...-+. .. .|..+.+.++ ...
T Consensus 185 ~~~~~g~~VlV~-G~G~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~l--Ga~~vi~-~~~~~~~~~v~~~~~g~g 257 (363)
T 3uog_A 185 GHLRAGDRVVVQ-GTGGVALFGLQIAKAT---GAEVIVTSSSREKLDRAFAL--GADHGIN-RLEEDWVERVYALTGDRG 257 (363)
T ss_dssp TCCCTTCEEEEE-SSBHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHH--TCSEEEE-TTTSCHHHHHHHHHTTCC
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCEEEEEecCchhHHHHHHc--CCCEEEc-CCcccHHHHHHHHhCCCC
Confidence 344567899999 755 488888888875 67999999999999888763 2211121 11 2333333333 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+||-..... .++.+.+.|+|+|.+++.-
T Consensus 258 ~D~vid~~g~~----~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 258 ADHILEIAGGA----GLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEEEEETTSS----CHHHHHHHEEEEEEEEEEC
T ss_pred ceEEEECCChH----HHHHHHHHhhcCCEEEEEe
Confidence 99998655532 3556667778888877653
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.018 Score=49.26 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=63.7
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l~~~fD~ 114 (211)
...+.++||-+ |+ ++|..++.+|++. +.+|++++.+++..+.+++ +. . +.+ .....|..+.+.+..+.+|+
T Consensus 161 ~~~~g~~VlV~-GaG~vG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~-lG-a-~~~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 161 GAKPGEWVAIY-GIGGLGHVAVQYAKAM---GLNVVAVDIGDEKLELAKE-LG-A-DLVVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TCCTTCEEEEE-CCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHH-TT-C-SEEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-CC-C-CEEecCCCccHHHHHHHHhCCCCE
Confidence 45667899999 64 4788888888775 5799999999999988875 22 1 111 11112333333222257999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||-.... ...++.+.+.|+++|.++..
T Consensus 234 vid~~g~---~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 234 AVVTAVS---KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEESSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred EEECCCC---HHHHHHHHHHhhcCCEEEEe
Confidence 9865543 24567777888888877653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.037 Score=40.18 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=58.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
.+|+=+ |+ |..+..++..+...+.+|+.+|.+++..+.+++.. .+.++.+|..+ .+... ...+|+|++.
T Consensus 5 m~i~Ii-G~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 5 MYIIIA-GI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp CEEEEE-CC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEE-CC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 467777 65 77777777777655678999999998776655432 24566777642 33222 3579999988
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+.......+..+.+.+.++ .+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 77 TGKEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CSCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred eCCchHHHHHHHHHHHcCCC-EEEE
Confidence 65543334444455556664 4554
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.035 Score=41.30 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=59.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
++|+=+ |+ |..+..+++.+...+-.|+.+|.+++.++.+++ ..+.++.||+.+ .+... -..+|.|++.
T Consensus 8 ~~viIi-G~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~------~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLV-GY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE------RGVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEE-CC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------TTCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCEEEE-Cc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------cCCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 467777 75 666677777776557799999999998887764 135678999754 44432 3578999987
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+........-...+.+.|+..++.
T Consensus 79 ~~~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 79 IPNGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp CSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCChHHHHHHHHHHHHHCCCCeEEE
Confidence 6654332222233344556555443
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0089 Score=51.54 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=64.0
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCcc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD 113 (211)
...+.++||-+ | .++|..++.++++. +.+|++++.+++..+.+++. . ...-+.....+..+.+... .+.+|
T Consensus 164 ~~~~g~~VlV~-Gg~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~l-G-a~~~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 164 GLTEGESVLIH-GGTSGIGTTAIQLARAF---GAEVYATAGSTGKCEACERL-G-AKRGINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp CCCTTCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHH-T-CSEEEETTTSCHHHHHHHHHSSCEE
T ss_pred CCCCCCEEEEE-cCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhc-C-CCEEEeCCchHHHHHHHHHhCCCce
Confidence 34567889988 4 56788888888765 67999999999999888763 2 1111111112333333322 46899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+||-..... .++.+.+.|+++|.+++.
T Consensus 238 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 238 IILDMIGAA----YFERNIASLAKDGCLSII 264 (353)
T ss_dssp EEEESCCGG----GHHHHHHTEEEEEEEEEC
T ss_pred EEEECCCHH----HHHHHHHHhccCCEEEEE
Confidence 888655442 466677888898887653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.017 Score=49.67 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=64.7
Q ss_pred HhhCCC--CeEEEEccc--cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c
Q 041509 36 AAGNNA--QLMVVACAN--VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F 109 (211)
Q Consensus 36 ~~~~~~--~~VLEi~Gt--g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~ 109 (211)
+...+. ++||-. |+ |+|..++.++.+. +. +|++++.+++..+.+++.+. ....+.....+..+.+... .
T Consensus 154 ~~~~~g~~~~vlI~-GasggiG~~~~~~a~~~---Ga~~Vi~~~~~~~~~~~~~~~~g-~~~~~d~~~~~~~~~~~~~~~ 228 (357)
T 2zb4_A 154 GHITAGSNKTMVVS-GAAGACGSVAGQIGHFL---GCSRVVGICGTHEKCILLTSELG-FDAAINYKKDNVAEQLRESCP 228 (357)
T ss_dssp SCCCTTSCCEEEES-STTBHHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHTSC-CSEEEETTTSCHHHHHHHHCT
T ss_pred cCCCCCCccEEEEE-CCCcHHHHHHHHHHHHC---CCCeEEEEeCCHHHHHHHHHHcC-CceEEecCchHHHHHHHHhcC
Confidence 345566 889999 64 7787777777764 55 99999999988888876443 1111111112233333322 3
Q ss_pred CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 110 READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 110 ~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.+|++|-.... ..++.+.+.|+++|.++++
T Consensus 229 ~~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 229 AGVDVYFDNVGG----NISDTVISQMNENSHIILC 259 (357)
T ss_dssp TCEEEEEESCCH----HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEECCCH----HHHHHHHHHhccCcEEEEE
Confidence 379999866552 5678888899998887764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.027 Score=48.25 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=63.0
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-+ |+| +|..++.+|++. +.+|++++.+++..+.+++. | .+.+ + .+..+ +...+|+|
T Consensus 173 ~~~~g~~VlV~-GaG~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~l--G-a~~v--~-~~~~~----~~~~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVA-GFGGLGSMAVKYAVAM---GAEVSVFARNEHKKQDALSM--G-VKHF--Y-TDPKQ----CKEELDFI 238 (348)
T ss_dssp TCCTTCEEEEE-SCSHHHHHHHHHHHHT---TCEEEEECSSSTTHHHHHHT--T-CSEE--E-SSGGG----CCSCEEEE
T ss_pred CCCCCCEEEEE-CCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHhc--C-CCee--c-CCHHH----HhcCCCEE
Confidence 45678899999 765 488888888875 56999999999999988762 2 2222 2 34322 23389999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|-..... ..++.+.+.|+|+|.++++
T Consensus 239 id~~g~~---~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 239 ISTIPTH---YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EECCCSC---CCHHHHHTTEEEEEEEEEC
T ss_pred EECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 8544433 2466677888998887764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0042 Score=51.56 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=40.4
Q ss_pred cEEEEEcchHHHhhhc-cCCccEEEEcCCcC-----------------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 93 HVEFVIGDAQSLLLSH-FREADFVLIDCNLE-----------------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-----------------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..++++||+.+.+..+ .++||+||+|.+-. ...++++++.++|+|+|.+++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3568999999998876 46899999998521 1256777888899998887775
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.02 Score=47.44 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=38.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
.+...|||. .||+|.+++.... + +.+++++|++|...+.|+++++
T Consensus 211 ~~~~~vlD~-f~GsGtt~~~a~~-~---gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDC-FMGSGTTAIVAKK-L---GRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEES-SCTTCHHHHHHHH-T---TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEEC-CCCCCHHHHHHHH-c---CCeEEEEeCCHHHHHHHHHHHH
Confidence 567889999 6999987666554 2 6799999999999999999987
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=50.30 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=62.7
Q ss_pred hCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc--cCCc
Q 041509 38 GNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l--~~~f 112 (211)
..+.++||-+ |+ ++|..++.++.+. +.+|++++.+++..+.+++. + .+.+ .....+..+.+.+. ...+
T Consensus 164 ~~~g~~vlV~-Gasg~iG~~~~~~a~~~---G~~Vi~~~~~~~~~~~~~~~--g-a~~~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 164 VRPGDDVLVM-AAGSGVSVAAIQIAKLF---GARVIATAGSEDKLRRAKAL--G-ADETVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp CCTTCEEEEC-STTSTTHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHH--T-CSEEEETTSTTHHHHHHHHTTTTCE
T ss_pred CCCCCEEEEE-CCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHhc--C-CCEEEcCCcccHHHHHHHHhCCCCc
Confidence 4567889999 75 7898888888775 57999999999998888753 2 1211 11112222333322 2479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-... . ..++.+.+.|+++|.++..
T Consensus 237 d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 237 DKVVDHTG-A---LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp EEEEESSC-S---SSHHHHHHHEEEEEEEEES
T ss_pred eEEEECCC-H---HHHHHHHHhhccCCEEEEE
Confidence 99987665 3 2355666777888877653
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.80 E-value=0.035 Score=46.47 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=63.1
Q ss_pred hCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch-HHHhhhccCCccE
Q 041509 38 GNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA-QSLLLSHFREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda-~e~l~~l~~~fD~ 114 (211)
..+.++||-+ |+ ++|..++.++++. +.+|++++.+++..+.+++ + + .+. ++.-+- .+....+ +.+|+
T Consensus 123 ~~~g~~vlV~-Ga~G~vG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~-~-g-a~~--~~~~~~~~~~~~~~-~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQ-AAAGALGTAAVQVARAM---GLRVLAAASRPEKLALPLA-L-G-AEE--AATYAEVPERAKAW-GGLDL 192 (302)
T ss_dssp CCTTCEEEES-STTBHHHHHHHHHHHHT---TCEEEEEESSGGGSHHHHH-T-T-CSE--EEEGGGHHHHHHHT-TSEEE
T ss_pred CCCCCEEEEE-CCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-c-C-CCE--EEECCcchhHHHHh-cCceE
Confidence 4567889999 75 7888888888875 5699999999998888865 2 2 222 222222 2333333 67999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||- ... ..++.+.+.|+++|.++..
T Consensus 193 vid-~g~----~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 193 VLE-VRG----KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EEE-CSC----TTHHHHHTTEEEEEEEEEC
T ss_pred EEE-CCH----HHHHHHHHhhccCCEEEEE
Confidence 986 543 3567778888998877653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.01 Score=51.01 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=42.2
Q ss_pred CcEEEE-EcchHHHhhhc-cCCccEEEEcCCcC----------cH----HHHHHHHHhcCCCCcEEEEEec
Q 041509 92 SHVEFV-IGDAQSLLLSH-FREADFVLIDCNLE----------NH----EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 92 ~~V~~~-~gda~e~l~~l-~~~fD~VfiD~~~~----------~y----~~~l~~~~~~L~pgG~viv~dn 146 (211)
...+++ +||+.+.+..+ .++||+||+|.+-. .| .+++.++.++|+|+|.+++..+
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 457888 99999998876 46899999998532 23 5567777888999888877544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.024 Score=48.56 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=64.5
Q ss_pred HhhCCCCeEEEEcccc--HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CC
Q 041509 36 AAGNNAQLMVVACANV--ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-RE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg--~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~ 111 (211)
+...+.++||-+ |+| +|..++.++.+.. +.+|++++.+++..+.+++. . ....+.....+..+.+..+ . +.
T Consensus 166 ~~~~~g~~vlV~-Gagg~iG~~~~~~a~~~~--Ga~Vi~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 166 ASLDPTKTLLVV-GAGGGLGTMAVQIAKAVS--GATIIGVDVREEAVEAAKRA-G-ADYVINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCCTTCEEEEE-TTTSHHHHHHHHHHHHHT--CCEEEEEESSHHHHHHHHHH-T-CSEEEETTTSCHHHHHHHHTTTSC
T ss_pred cCCCCCCEEEEE-CCCccHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHh-C-CCEEecCCCccHHHHHHHHhcCCC
Confidence 345677899999 655 7887777777641 46899999999998888653 2 1111111111222223333 2 58
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|++|-.... ...++.+.+.|+|+|.++..
T Consensus 241 ~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 241 VDAVIDLNNS---EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EEEEEESCCC---HHHHTTGGGGEEEEEEEEEC
T ss_pred ceEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 9999865543 24677788889998877664
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=49.92 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC---c-------------H-------HHHHHHHHhcCCCCcEEEEE
Q 041509 91 ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE---N-------------H-------EGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~---~-------------y-------~~~l~~~~~~L~pgG~viv~ 144 (211)
..++++++||+.+.++.+ +++||+||.|.+-. . | .++++++.++|+|+|.+++.
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 457899999999988765 47999999997531 1 1 34567788899999987664
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.022 Score=48.84 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCCeEEEE-ccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 40 NAQLMVVA-CANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi-~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
+.++||-+ +..++|..++.+|++. +.+|++++.+++..+.+++. . .+.+--...+..+.+... .+.+|+||-
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~l-G--a~~vi~~~~~~~~~~~~~~~~g~Dvv~d 223 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY---GLRVITTASRNETIEWTKKM-G--ADIVLNHKESLLNQFKTQGIELVDYVFC 223 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEECCSHHHHHHHHHH-T--CSEEECTTSCHHHHHHHHTCCCEEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhc-C--CcEEEECCccHHHHHHHhCCCCccEEEE
Confidence 67889988 2256788888888765 67999999999999988873 2 111100012333333333 357998875
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.... ...++.+.+.|+++|.++.
T Consensus 224 ~~g~---~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 224 TFNT---DMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp SSCH---HHHHHHHHHHEEEEEEEEE
T ss_pred CCCc---hHHHHHHHHHhccCCEEEE
Confidence 4442 3456777888899888765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.031 Score=47.90 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=63.7
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .++|..++.+|++. +.+|+++ .+++..+.+++. +. +.+. ...+..+.+... ...+
T Consensus 147 ~~~~g~~VlV~-Ga~g~iG~~~~q~a~~~---Ga~Vi~~-~~~~~~~~~~~l--Ga-~~i~-~~~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 147 QVQDGQTVLIQ-GGGGGVGHVAIQIALAR---GARVFAT-ARGSDLEYVRDL--GA-TPID-ASREPEDYAAEHTAGQGF 217 (343)
T ss_dssp CCCTTCEEEEE-TTTSHHHHHHHHHHHHT---TCEEEEE-ECHHHHHHHHHH--TS-EEEE-TTSCHHHHHHHHHTTSCE
T ss_pred CCCCCCEEEEe-cCCCHHHHHHHHHHHHC---CCEEEEE-eCHHHHHHHHHc--CC-CEec-cCCCHHHHHHHHhcCCCc
Confidence 34567899999 7 57888888888875 6699999 888888888653 22 2233 222333333332 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-... . ..++.+.+.|+++|.++++
T Consensus 218 D~vid~~g-~---~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 218 DLVYDTLG-G---PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp EEEEESSC-T---HHHHHHHHHEEEEEEEEES
T ss_pred eEEEECCC-c---HHHHHHHHHHhcCCeEEEE
Confidence 98875444 2 4677777888998887764
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.018 Score=49.58 Aligned_cols=99 Identities=11% Similarity=-0.049 Sum_probs=62.5
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .|+|..++.++... +.+|++++.+++..+.+++. +....+.....+..+.+.+. ...+
T Consensus 167 ~~~~g~~vlV~-GasggiG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~~--ga~~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 167 CVKAGESVLVH-GASGGVGLAACQIARAY---GLKILGTAGTEEGQKIVLQN--GAHEVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp CCCTTCEEEEE-TCSSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHT--TCSEEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCcCEEEEE-CCCChHHHHHHHHHHHC---CCEEEEEeCChhHHHHHHHc--CCCEEEeCCCchHHHHHHHHcCCCCc
Confidence 34567889999 7 47788877777764 67999999999988877643 21111111112222223222 2379
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|++|-.... ..++.+.+.|+++|.++.+-
T Consensus 241 D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 241 DIIIEMLAN----VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred EEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence 999755442 34667778889988877643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.024 Score=48.91 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=63.4
Q ss_pred HhhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH-HHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ-SLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~-e~l~~l~~~fD 113 (211)
+...+.++||-+ | .++|..++.+|++. +.+|++++.+++..+.+++. . .+. ++.-+.. +....+.+.+|
T Consensus 175 ~~~~~g~~VlV~-GaG~vG~~~~qlak~~---Ga~Vi~~~~~~~~~~~~~~l-G--a~~--v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIV-GLGGIGSMGTLISKAM---GAETYVISRSSRKREDAMKM-G--ADH--YIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp TTCSTTCEEEEE-CCSHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHHHH-T--CSE--EEEGGGTSCHHHHSCSCEE
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHc-C--CCE--EEcCcCchHHHHHhhcCCC
Confidence 345677899999 6 45688888888876 56899999999999888763 2 121 2222111 22233336899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+||-..... ....++.+.+.|+++|.++..
T Consensus 246 ~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 246 LIVVCASSL-TDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEECCSCS-TTCCTTTGGGGEEEEEEEEEC
T ss_pred EEEECCCCC-cHHHHHHHHHHhcCCCEEEEe
Confidence 998654430 012355667778888877653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.063 Score=45.54 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=64.5
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC---
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC--- 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~--- 119 (211)
+|||++ ||+|-+++.|-.+- --.|.++|+|+.+.+.-+.|+. -+++.+|..++-......+|+++-..
T Consensus 2 kvidLF-sG~GG~~~G~~~aG---~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 2 NLISLF-SGAGGLDLGFQKAG---FRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp EEEEES-CTTCHHHHHHHHTT---CEEEEEEECCTTTHHHHHHHCC-----SEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred eEEEeC-cCccHHHHHHHHCC---CEEEEEEeCCHHHHHHHHHHCC-----CCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 689996 88998877776541 2457899999999999998865 25678999887554456789987542
Q ss_pred -----C-------cC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 120 -----N-------LE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 120 -----~-------~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
. .+ .+.++++.+. .++| . +++.+|+-
T Consensus 73 ~fS~ag~~~g~~d~R~~L~~~~~r~i~-~~~P-k-~~~~ENV~ 112 (331)
T 3ubt_Y 73 SWSEGGSLRGIDDPRGKLFYEYIRILK-QKKP-I-FFLAENVK 112 (331)
T ss_dssp GTEETTEECCTTCGGGHHHHHHHHHHH-HHCC-S-EEEEEECC
T ss_pred CcCCCCCccCCCCchhHHHHHHHHHHh-ccCC-e-EEEeeeec
Confidence 1 11 2355555444 3678 3 55669974
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.024 Score=49.30 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=61.9
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc------chHHHhhhc-
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIG------DAQSLLLSH- 108 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g------da~e~l~~l- 108 (211)
..+.++||-+ |+ ++|..++.+|++. + .+|++++.+++..+.+++. + .+. ++.- |..+.+.++
T Consensus 193 ~~~g~~VlV~-GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~~~~l--G-a~~--vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 193 SFAGKTVVIQ-GAGPLGLFGVVIARSL---GAENVIVIAGSPNRLKLAEEI--G-ADL--TLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CCBTCEEEEE-CCSHHHHHHHHHHHHT---TBSEEEEEESCHHHHHHHHHT--T-CSE--EEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEE-CcCHHHHHHHHHHHHc---CCceEEEEcCCHHHHHHHHHc--C-CcE--EEeccccCcchHHHHHHHHh
Confidence 4557889999 64 4688888888875 5 5999999999999888742 2 121 2222 222333333
Q ss_pred c-CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 F-READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 ~-~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
. ..+|+||-..... ..++.+.+.|+++|.++..
T Consensus 264 ~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 264 HGRGADFILEATGDS---RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEEC
T ss_pred CCCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEE
Confidence 2 3799998554432 3466677778888887664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.016 Score=51.01 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=43.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHc-------------cCCCcEEEEEeCChhHHHHHHHHhcCCC-------------CcE
Q 041509 41 AQLMVVACANVANATTLALAAAA-------------HQTGGRVVCILRRVEEYKLSKKILGLDA-------------SHV 94 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~-------------~~~~g~v~tiE~~~~~~~~Ar~~~~~~~-------------~~V 94 (211)
+-+|+|+ ||++|..|+.++..+ .++.-+|+--|.-.......=+.+.... .+-
T Consensus 53 ~~~IaDl-GCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDL-GCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEE-TCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred ceEEEec-CCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 4679999 999999999873322 1134677777765544332222232110 011
Q ss_pred EEEEcchHHHhhhc--cCCccEEEEcC
Q 041509 95 EFVIGDAQSLLLSH--FREADFVLIDC 119 (211)
Q Consensus 95 ~~~~gda~e~l~~l--~~~fD~VfiD~ 119 (211)
.|+.|.+..+-.++ .++||+|+...
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~ 158 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAF 158 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred eEEEecChhhhcccCCCcceEEEEecc
Confidence 23444333322222 67999999864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.077 Score=39.03 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=51.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
++|+-+ |+ |..+..+++.+...+.+|+.+|.+++.++.+++. .+.++.||+.+ .+... ...+|.|++-
T Consensus 7 ~~v~I~-G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 7 YEYIVI-GS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CSEEEE-CC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CEEEEE-CC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 568888 76 5677777777765577899999999988776542 25678898754 34433 3579999987
Q ss_pred CCc
Q 041509 119 CNL 121 (211)
Q Consensus 119 ~~~ 121 (211)
.+.
T Consensus 78 ~~~ 80 (141)
T 3llv_A 78 GSD 80 (141)
T ss_dssp CSC
T ss_pred cCC
Confidence 663
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.027 Score=48.45 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=61.8
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ | .|+|..++.++.+. +.+|++++.+++..+.+++. . ....+..-..+..+.+.+. ...+
T Consensus 159 ~~~~g~~vlV~-Ga~ggiG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 159 NVQAGDYVLIH-AGLSGVGTAAIQLTRMA---GAIPLVTAGSQKKLQMAEKL-G-AAAGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CCCTTCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHH-T-CSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCCEEEEE-CCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc-C-CcEEEecCChHHHHHHHHHhcCCCc
Confidence 34567889999 7 57888877777764 67999999999988888543 2 1111111112222333222 2479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++|-..... .++.+.+.|+++|.+++.
T Consensus 233 d~vi~~~G~~----~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 233 NLILDCIGGS----YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp EEEEESSCGG----GHHHHHHHEEEEEEEEEC
T ss_pred eEEEECCCch----HHHHHHHhccCCCEEEEE
Confidence 9998666543 355667778888877664
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.12 Score=44.03 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=63.0
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch-HHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA-QSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda-~e~l~~l--~~~f 112 (211)
.. +.++||-+ |+ ++|..++.+|++..+ +.+|++++.+++..+.+++. . .+. ++.-+- .+....+ ...+
T Consensus 168 ~~-~g~~VlV~-GaG~vG~~aiqlak~~~~-Ga~Vi~~~~~~~~~~~~~~l-G--a~~--vi~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVN-GIGGLAVYTIQILKALMK-NITIVGISRSKKHRDFALEL-G--ADY--VSEMKDAESLINKLTDGLGA 239 (344)
T ss_dssp TC-SSCEEEEE-CCSHHHHHHHHHHHHHCT-TCEEEEECSCHHHHHHHHHH-T--CSE--EECHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCEEEEE-CCCHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHh-C--CCE--EeccccchHHHHHhhcCCCc
Confidence 45 77899999 65 458888888887521 46899999999999888763 2 121 121111 2222222 2379
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-.... ...++.+.+.|+|+|.++..
T Consensus 240 D~vid~~g~---~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAIDLVGT---EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEESSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEECCCC---hHHHHHHHHHhhcCCEEEEe
Confidence 999855443 24577778888898887654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.082 Score=46.83 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=63.7
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch------------
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA------------ 101 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda------------ 101 (211)
+...+.++||-+ | .++|..++.+|++. +.+|+.++.+++..+.+++. +...-+.....|.
T Consensus 216 ~~~~~g~~VlV~-GasG~iG~~a~qla~~~---Ga~vi~~~~~~~~~~~~~~l--Ga~~~i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 216 AQMKQGDIVLIW-GASGGLGSYAIQFVKNG---GGIPVAVVSSAQKEAAVRAL--GCDLVINRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TCCCTTCEEEET-TTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHT--TCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred cCCCCCCEEEEE-CCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhc--CCCEEEecccccccccccccccccc
Confidence 344567889988 6 57788888888775 67999999999998888652 2221121111110
Q ss_pred ------HHHhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 102 ------QSLLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 102 ------~e~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+.+.+. ...+|+||-.... ..++.+.+.|+++|.++++
T Consensus 290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEES
T ss_pred hhhhHHHHHHHHHhCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEE
Confidence 1222222 4579998855443 3577778889999987764
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.036 Score=47.68 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred HhhCCC------CeEEEEcc-ccHHHHH-HHHH-HHccCCCcE-EEEEeCChh---HHHHHHHHhcCCCCcEEEEEcchH
Q 041509 36 AAGNNA------QLMVVACA-NVANATT-LALA-AAAHQTGGR-VVCILRRVE---EYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 36 ~~~~~~------~~VLEi~G-tg~G~st-l~la-~a~~~~~g~-v~tiE~~~~---~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
+...+. ++||-+ | .++|..+ +.+| +++ +.+ |++++.+++ ..+.+++. . .+.+.....|..
T Consensus 162 ~~~~~g~~~~~~~~VlV~-GaG~vG~~a~iqla~k~~---Ga~~Vi~~~~~~~~~~~~~~~~~l-G--a~~v~~~~~~~~ 234 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVL-GNGSLGLLTLAMLKVDDK---GYENLYCLGRRDRPDPTIDIIEEL-D--ATYVDSRQTPVE 234 (357)
T ss_dssp HHHTTTTSCCCCCEEEEE-CCSHHHHHHHHHHHHCTT---CCCEEEEEECCCSSCHHHHHHHHT-T--CEEEETTTSCGG
T ss_pred cCCCCCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHc---CCcEEEEEeCCcccHHHHHHHHHc-C--CcccCCCccCHH
Confidence 445566 899999 6 4457777 7777 654 455 999999998 88888642 2 222211112333
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+ +.++.+.+|+||-.... ...++.+.+.|+++|.++..
T Consensus 235 ~-i~~~~gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 235 D-VPDVYEQMDFIYEATGF---PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp G-HHHHSCCEEEEEECSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred H-HHHhCCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEE
Confidence 3 33333479998744332 23567778888888877664
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.13 Score=38.51 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=60.5
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~Vf 116 (211)
.++|+=+ |+ |..+..+++.+...+-+|+.+|.++ +..+..++... ..++++.||+.+ .+... -+..|.|+
T Consensus 3 ~~~vlI~-G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVC-GH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEE-CC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCcEEEE-CC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc---CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 3567766 64 7778888877765567899999984 55544444333 347889999853 44432 46889999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+..+............+.+.|...+++
T Consensus 77 ~~~~~d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 77 ALSDNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp ECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred EecCChHHHHHHHHHHHHHCCCCEEEE
Confidence 876554333344444444544444544
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.12 Score=46.39 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=66.0
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--------------CCcEEEEEcchHHHhhhc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--------------ASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--------------~~~V~~~~gda~e~l~~l 108 (211)
+|.-| |+ ||.+..+|..+...+-+|+.+|++++.++..++..... ..++++ ..|..+.+.
T Consensus 4 kI~VI-G~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~~-- 77 (450)
T 3gg2_A 4 DIAVV-GI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAVP-- 77 (450)
T ss_dssp EEEEE-CC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHGG--
T ss_pred EEEEE-Cc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHHh--
Confidence 56667 65 67777777776655679999999999887766532110 233443 345554433
Q ss_pred cCCccEEEEcCCcC----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 109 FREADFVLIDCNLE----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 109 ~~~fD~VfiD~~~~----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..|+||+.-+.. ...+.++.+.+.|++ |.++|......++
T Consensus 78 --~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~-g~iVV~~STv~pg 127 (450)
T 3gg2_A 78 --EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR-YILIVTKSTVPVG 127 (450)
T ss_dssp --GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS-CEEEEECSCCCTT
T ss_pred --cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC-CCEEEEeeeCCCc
Confidence 479999976544 457788888888887 6777655555555
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.025 Score=48.43 Aligned_cols=119 Identities=11% Similarity=-0.052 Sum_probs=72.9
Q ss_pred CCChhHHHHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEEc
Q 041509 23 AKEPNEAEFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVIG 99 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~g 99 (211)
..++...+|....-+ ..+...|||+ ||++|-.+.+.+... ...+|+++|+-..-.+.=+ .+..+ -.-|.|+.+
T Consensus 75 y~SR~~~KL~ei~~~~~l~~~~~VlDL-GaapGGwsq~~~~~~--gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~ 150 (321)
T 3lkz_A 75 PVSRGTAKLRWLVERRFLEPVGKVIDL-GCGRGGWCYYMATQK--RVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSG 150 (321)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCEEEEEE-TCTTCHHHHHHTTCT--TEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECS
T ss_pred ccchHHHHHHHHHHhcCCCCCCEEEEe-CCCCCcHHHHHHhhc--CCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEec
Confidence 455666555544422 3456689999 999999988776543 2357999998764221000 00111 123889888
Q ss_pred -chHHHhhhccCCccEEEEcCCcC------c---HHHHHHHHHhcCCCC-cEEEEEecCCCC
Q 041509 100 -DAQSLLLSHFREADFVLIDCNLE------N---HEGVLRAVQAGNKPN-GAVVVGYNAFRK 150 (211)
Q Consensus 100 -da~e~l~~l~~~fD~VfiD~~~~------~---y~~~l~~~~~~L~pg-G~viv~dn~~~~ 150 (211)
|+... + ..++|+|++|-... + -...++.+.+.|+++ |.++| -+|.+
T Consensus 151 ~Dv~~l-~--~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~--KVl~p 207 (321)
T 3lkz_A 151 VDVFYR-P--SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV--KVLCP 207 (321)
T ss_dssp CCTTSS-C--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE--EESCT
T ss_pred cCHhhC-C--CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE--EEcCC
Confidence 77544 2 26799999996532 1 134666777778777 65554 55655
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.023 Score=48.70 Aligned_cols=95 Identities=18% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc--cCCccE
Q 041509 40 NAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 40 ~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l--~~~fD~ 114 (211)
+.++||-+ |+ ++|..++.+|++. +. +|++++.+++..+.+++. . . +.+ .....+..+.+.++ ...+|+
T Consensus 167 ~g~~VlV~-GaG~vG~~~~q~a~~~---Ga~~Vi~~~~~~~~~~~~~~~-G-a-~~~~~~~~~~~~~~v~~~~~g~g~D~ 239 (348)
T 2d8a_A 167 SGKSVLIT-GAGPLGLLGIAVAKAS---GAYPVIVSEPSDFRRELAKKV-G-A-DYVINPFEEDVVKEVMDITDGNGVDV 239 (348)
T ss_dssp TTCCEEEE-CCSHHHHHHHHHHHHT---TCCSEEEECSCHHHHHHHHHH-T-C-SEEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh-C-C-CEEECCCCcCHHHHHHHHcCCCCCCE
Confidence 66889999 65 4688888888775 45 899999999998888753 2 1 111 11112333333333 237999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||-.... ...++.+.+.|+++|.++..
T Consensus 240 vid~~g~---~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 240 FLEFSGA---PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEECSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred EEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 9855443 24567777888888877654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.098 Score=45.24 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 39 NNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
.++++||-+ |+ ++|..++.+|++. +.+|+++- +++..+.+++. |...-+.....|..+.+.++ .+.+|+|
T Consensus 163 ~~g~~VlV~-Ga~G~vG~~a~qla~~~---Ga~Vi~~~-~~~~~~~~~~l--Ga~~vi~~~~~~~~~~v~~~t~g~~d~v 235 (371)
T 3gqv_A 163 SKPVYVLVY-GGSTATATVTMQMLRLS---GYIPIATC-SPHNFDLAKSR--GAEEVFDYRAPNLAQTIRTYTKNNLRYA 235 (371)
T ss_dssp SSCCEEEEE-STTSHHHHHHHHHHHHT---TCEEEEEE-CGGGHHHHHHT--TCSEEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred CCCcEEEEE-CCCcHHHHHHHHHHHHC---CCEEEEEe-CHHHHHHHHHc--CCcEEEECCCchHHHHHHHHccCCccEE
Confidence 567889999 65 5899999999875 56888885 88888888653 21111222223444444433 4569998
Q ss_pred EEcCCcCcHHHHHHHHHhcC-CCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGN-KPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L-~pgG~viv~ 144 (211)
|-.... ...++.+.+.| +++|.++.+
T Consensus 236 ~d~~g~---~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 236 LDCITN---VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EESSCS---HHHHHHHHHHSCTTCEEEEES
T ss_pred EECCCc---hHHHHHHHHHhhcCCCEEEEE
Confidence 844443 24566667777 588877653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.13 Score=39.57 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC-CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH--HHhhhc--cCCccEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT-GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ--SLLLSH--FREADFV 115 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~-~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~--e~l~~l--~~~fD~V 115 (211)
.++|+=+ |+ |..+..+++.+... +.+|+.+|.+++..+.+++. .++++.||+. +.+... ...+|.|
T Consensus 39 ~~~v~Ii-G~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~------g~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLIL-GM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE------GRNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEE-CC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT------TCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEE-CC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC------CCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 3578877 75 67777777777554 56899999999887776542 2456778764 344443 3579999
Q ss_pred EEcCCcCcH-HHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLENH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~y-~~~l~~~~~~L~pgG~viv 143 (211)
++..+.... ......+ +.+.|...+++
T Consensus 110 i~~~~~~~~~~~~~~~~-~~~~~~~~ii~ 137 (183)
T 3c85_A 110 LLAMPHHQGNQTALEQL-QRRNYKGQIAA 137 (183)
T ss_dssp EECCSSHHHHHHHHHHH-HHTTCCSEEEE
T ss_pred EEeCCChHHHHHHHHHH-HHHCCCCEEEE
Confidence 986553322 2333333 34555555544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.05 Score=48.08 Aligned_cols=77 Identities=6% Similarity=-0.158 Sum_probs=48.7
Q ss_pred CCeEEEEccccHHHHHHHHHHH----c-----------cCCCcEEEEEeCC-----------hhHHHHHHHHhcCCCCcE
Q 041509 41 AQLMVVACANVANATTLALAAA----A-----------HQTGGRVVCILRR-----------VEEYKLSKKILGLDASHV 94 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a----~-----------~~~~g~v~tiE~~-----------~~~~~~Ar~~~~~~~~~V 94 (211)
+-+|+|+ ||++|..|+.+... + +.+.-+|+--|.- |.+.+.+++.. +...+-
T Consensus 53 ~~~IaDl-GCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-g~~~~~ 130 (384)
T 2efj_A 53 CFKVGDL-GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-GRKIGS 130 (384)
T ss_dssp EEEEEEE-TCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT-CCCTTS
T ss_pred ceEEEec-CCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc-cCCCCc
Confidence 4569999 99999999988766 1 1124567777766 55555443332 211234
Q ss_pred EEEEcchHHHhhhc--cCCccEEEEcC
Q 041509 95 EFVIGDAQSLLLSH--FREADFVLIDC 119 (211)
Q Consensus 95 ~~~~gda~e~l~~l--~~~fD~VfiD~ 119 (211)
.|+.|.+..+-.++ .+++|+||...
T Consensus 131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~ 157 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEESMHFLHSCY 157 (384)
T ss_dssp EEEEECCSCTTSCCSCTTCEEEEEEES
T ss_pred eEEEecchhhhhccCCCCceEEEEecc
Confidence 66677665543333 67999999864
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.023 Score=47.34 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=75.9
Q ss_pred CCChhHHHHHHHHH--hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEEc
Q 041509 23 AKEPNEAEFISALA--AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVIG 99 (211)
Q Consensus 23 ~~~~~~~~lL~~l~--~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~g 99 (211)
..++..-+|+...- ...+...|||+ ||+.|-.+-+.+... ...+|+++|+-+.-.+.=+ .++.+ -+.|+|+.+
T Consensus 59 yrSRa~~KL~ei~ek~~l~~g~~VvDL-GaapGGWSq~~a~~~--g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~g 134 (267)
T 3p8z_A 59 AVSRGSAKLQWFVERNMVIPEGRVIDL-GCGRGGWSYYCAGLK--KVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSG 134 (267)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEE-SCTTSHHHHHHHTST--TEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECS
T ss_pred ccchHHHHHHHHHHhcCCCCCCEEEEc-CCCCCcHHHHHHHhc--CCCEEEEEecCCCCccCcc-hhhhcCcCceEEEec
Confidence 45555555544332 34566789999 999999988877653 2468999998765331100 01111 256999999
Q ss_pred -chHHHhhhccCCccEEEEcCCcC---------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 100 -DAQSLLLSHFREADFVLIDCNLE---------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 100 -da~e~l~~l~~~fD~VfiD~~~~---------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|.... + ..++|.|+.|-... .-.+.++.+.+.|++ |.++| -+|.+.
T Consensus 135 vDv~~~-~--~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~--KVl~py 190 (267)
T 3p8z_A 135 KDVFYL-P--PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI--KVLNPY 190 (267)
T ss_dssp CCGGGC-C--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE--EESCCC
T ss_pred cceeec-C--CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE--EEccCC
Confidence 87443 2 36899999995432 113467777888988 76655 556554
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.11 Score=44.76 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=65.4
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD~ 119 (211)
-+++|+| ||+|-.++.+..+-- ..-.|.++|+|+.+.+..+.|+.. ..++.+|..++.+.. ...+|+++...
T Consensus 4 ~~~idLF-aG~GG~~~G~~~aG~-~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELY-SGIGGMHCAWKESGL-DGEIVAAVDINTVANSVYKHNFPE----TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEET-CTTTHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCTT----SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEEC-cCccHHHHHHHHcCC-CceEEEEEeCCHHHHHHHHHhCCC----CceeccccccCCHHHhccCCCCEEEecC
Confidence 3699995 999988888776521 013578999999999999999762 235678887664321 23799998753
Q ss_pred C----------------c-CcHHHHHHHHHhcCC-CCcEEEEEecCC
Q 041509 120 N----------------L-ENHEGVLRAVQAGNK-PNGAVVVGYNAF 148 (211)
Q Consensus 120 ~----------------~-~~y~~~l~~~~~~L~-pgG~viv~dn~~ 148 (211)
+ + ..+.++++.+.. ++ | .+++.+|+-
T Consensus 78 PCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~-~~~P--~~~vlENV~ 121 (333)
T 4h0n_A 78 PCQPFTRNGKYLDDNDPRTNSFLYLIGILDQ-LDNV--DYILMENVK 121 (333)
T ss_dssp CCCCSEETTEECCTTCTTSCCHHHHHHHGGG-CTTC--CEEEEEECT
T ss_pred CCcchhhhhhccCCcCcccccHHHHHHHHHH-hcCC--CEEEEecch
Confidence 1 1 134566655544 55 7 356669975
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.12 Score=44.40 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=61.9
Q ss_pred hhC-CCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGN-NAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~-~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
... +.++||-+ |+ ++|..++.+|++. +.+|++++.+++..+.+++.+. .+.+ +..+-.+.+.++.+.+|+
T Consensus 176 ~~~~~g~~VlV~-GaG~vG~~a~qlak~~---Ga~Vi~~~~~~~~~~~~~~~lG--a~~v--i~~~~~~~~~~~~~g~D~ 247 (357)
T 2cf5_A 176 GLKQPGLRGGIL-GLGGVGHMGVKIAKAM---GHHVTVISSSNKKREEALQDLG--ADDY--VIGSDQAKMSELADSLDY 247 (357)
T ss_dssp STTSTTCEEEEE-CCSHHHHHHHHHHHHH---TCEEEEEESSTTHHHHHHTTSC--CSCE--EETTCHHHHHHSTTTEEE
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHHcC--Ccee--eccccHHHHHHhcCCCCE
Confidence 344 67889999 64 4688888888875 5699999999998888874443 1221 221112333334457999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||-..... ..++.+.+.|+|+|.++..
T Consensus 248 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 248 VIDTVPVH---HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEECCCSC---CCSHHHHTTEEEEEEEEEC
T ss_pred EEECCCCh---HHHHHHHHHhccCCEEEEe
Confidence 87544432 1245566778888887664
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.39 Score=33.43 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=55.7
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--HhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l~~~fD~Vfi 117 (211)
.++|+-+ |+ |+.+..++..+...+ .+|+.++.+++..+.++ . ..++++.+|..+ .+......+|+||.
T Consensus 5 ~~~v~I~-G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~---~---~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVV-GA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN---R---MGVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEE-CC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH---T---TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCeEEEE-CC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH---h---CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 3578888 76 667777766665545 68999999998776654 1 235566666643 23333468999998
Q ss_pred cCCcCcHHHHHHHHHh
Q 041509 118 DCNLENHEGVLRAVQA 133 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~ 133 (211)
..+........+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~ 91 (118)
T 3ic5_A 76 AAPFFLTPIIAKAAKA 91 (118)
T ss_dssp CSCGGGHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHH
Confidence 8765545556666654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.16 Score=38.20 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~V 115 (211)
.+.++|+=+ |+ |..+..++..+...+.+|+.+|.+++.++.+++ ...+.++.+|+.+ .+... ...+|+|
T Consensus 17 ~~~~~v~Ii-G~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-----~~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIF-GC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-----EFSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEE-CC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-----TCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEE-CC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-----cCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 456788888 75 666677776665546799999999886654331 1124566777532 33322 3468999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++.............+.+.+.+...++.
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 89 FAFTNDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp EECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 9877654444444444444444444443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.018 Score=49.30 Aligned_cols=94 Identities=7% Similarity=0.054 Sum_probs=60.9
Q ss_pred CCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc-cCCccEE
Q 041509 40 NAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l-~~~fD~V 115 (211)
+.++||-+ | .++|..++.+|++. +. +|++++.+++..+.+++. . +.+ .....+..+.+.++ ...+|+|
T Consensus 164 ~g~~VlV~-GaG~vG~~~~q~a~~~---Ga~~Vi~~~~~~~~~~~~~~l-a---~~v~~~~~~~~~~~~~~~~~~g~D~v 235 (343)
T 2dq4_A 164 SGKSVLIT-GAGPIGLMAAMVVRAS---GAGPILVSDPNPYRLAFARPY-A---DRLVNPLEEDLLEVVRRVTGSGVEVL 235 (343)
T ss_dssp TTSCEEEE-CCSHHHHHHHHHHHHT---TCCSEEEECSCHHHHGGGTTT-C---SEEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh-H---HhccCcCccCHHHHHHHhcCCCCCEE
Confidence 67889999 6 45688888888775 45 899999999888777654 2 111 10012333333322 4579999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|-.... ...++.+.+.|+++|.++..
T Consensus 236 id~~g~---~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 236 LEFSGN---EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EECSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred EECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 855443 24567777888888877653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.16 Score=40.34 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=60.8
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCN 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~ 120 (211)
|+=+ | .|..+..+++.+...+-.|+.+|.+++.++...+.. .+.++.||+.+ .+... -...|.|++..+
T Consensus 3 iiIi-G--~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 3 VIII-G--GETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp EEEE-C--CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred EEEE-C--CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-----CCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5555 5 488888888888665779999999999887654432 25688999864 34332 468899998776
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv 143 (211)
..........+.+.+.|...+++
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCeEEE
Confidence 55444444544544444444443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.027 Score=48.26 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=47.7
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~ 106 (211)
..+...|||-+ ||+|.+++. |..+ +-+.+++|++|...+.|++++.......+.+++|+.++..
T Consensus 250 ~~~~~~VlDpF-~GsGtt~~a-a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i~~ 313 (323)
T 1boo_A 250 TEPDDLVVDIF-GGSNTTGLV-AERE---SRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRILN 313 (323)
T ss_dssp CCTTCEEEETT-CTTCHHHHH-HHHT---TCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEECC-CCCCHHHHH-HHHc---CCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHHHc
Confidence 35678899994 899975544 3333 6799999999999999999998333346667777777643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.21 Score=43.01 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=58.7
Q ss_pred CCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.++||-+ |+ ++|..++.+|++. +.+|++++.+++..+.+++.+. .+. ++.-+-.+.+.++.+.+|+||-.
T Consensus 187 ~g~~VlV~-GaG~vG~~~~q~a~~~---Ga~Vi~~~~~~~~~~~~~~~lG--a~~--v~~~~~~~~~~~~~~~~D~vid~ 258 (366)
T 1yqd_A 187 PGKHIGIV-GLGGLGHVAVKFAKAF---GSKVTVISTSPSKKEEALKNFG--ADS--FLVSRDQEQMQAAAGTLDGIIDT 258 (366)
T ss_dssp TTCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHTSC--CSE--EEETTCHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHhcC--Cce--EEeccCHHHHHHhhCCCCEEEEC
Confidence 67889989 64 4577777777765 5799999999998888775443 121 22221123333344589999865
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..... .++.+.+.|+++|.++..
T Consensus 259 ~g~~~---~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 259 VSAVH---PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp CSSCC---CSHHHHHHEEEEEEEEEC
T ss_pred CCcHH---HHHHHHHHHhcCCEEEEE
Confidence 44331 133445566778877653
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.12 Score=46.85 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CC---------CCcEEEEEcchHHHh
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LD---------ASHVEFVIGDAQSLL 105 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~---------~~~V~~~~gda~e~l 105 (211)
...+|.-| |+ ||.+..+|..+...+-+|+++|++++.++..++.-. +. ..++++ ..|..+.+
T Consensus 7 ~~~~I~VI-G~--G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~ 82 (478)
T 2y0c_A 7 GSMNLTII-GS--GSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV 82 (478)
T ss_dssp CCCEEEEE-CC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH
T ss_pred CCceEEEE-Cc--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh
Confidence 44567778 75 455555555554446689999999998887766421 10 123433 33444433
Q ss_pred hhccCCccEEEEcCCc----------CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 106 LSHFREADFVLIDCNL----------ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~----------~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
. ..|+||+.-+. ....+.++.+.+.|+| |.+++......++
T Consensus 83 ~----~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~-~~iVV~~STv~~g 133 (478)
T 2y0c_A 83 A----HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG-FKVIVDKSTVPVG 133 (478)
T ss_dssp H----HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS-CEEEEECSCCCTT
T ss_pred h----cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC-CCEEEEeCCcCCC
Confidence 3 47999987544 3446778888888887 6676655555455
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.11 Score=44.69 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCCh---hHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 41 AQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRV---EEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~---~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++||-+ |+ ++|..++.++++. +.+|++++.++ +..+.+++. + .+.+. ..+..+.+.+..+.+|+||
T Consensus 181 g~~VlV~-GaG~vG~~~~q~a~~~---Ga~Vi~~~~~~~~~~~~~~~~~~--g-a~~v~--~~~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVV-GTGPIGVLFTLLFRTY---GLEVWMANRREPTEVEQTVIEET--K-TNYYN--SSNGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEE-SCHHHHHHHHHHHHHH---TCEEEEEESSCCCHHHHHHHHHH--T-CEEEE--CTTCSHHHHHHHCCEEEEE
T ss_pred CCEEEEE-CCCHHHHHHHHHHHhC---CCEEEEEeCCccchHHHHHHHHh--C-Cceec--hHHHHHHHHHhCCCCCEEE
Confidence 7899999 64 4566666677664 56999999998 777777643 2 22221 1122222221236799998
Q ss_pred EcCCcCcHHHHH-HHHHhcCCCCcEEEEE
Q 041509 117 IDCNLENHEGVL-RAVQAGNKPNGAVVVG 144 (211)
Q Consensus 117 iD~~~~~y~~~l-~~~~~~L~pgG~viv~ 144 (211)
-..... ..+ +.+.+.|+++|.++..
T Consensus 252 d~~g~~---~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 252 DATGAD---VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp ECCCCC---THHHHHHGGGEEEEEEEEEC
T ss_pred ECCCCh---HHHHHHHHHHHhcCCEEEEE
Confidence 655543 245 7778888998877654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.079 Score=44.64 Aligned_cols=89 Identities=21% Similarity=0.124 Sum_probs=59.5
Q ss_pred eEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcC
Q 041509 43 LMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~ 119 (211)
.||-+ | .++|..++.+|++. +.+|++++.+++..+.+++. . .+. ++..+-.+.+..+ .+.+|+|| |+
T Consensus 149 ~VlV~-Ga~G~vG~~aiqla~~~---Ga~Vi~~~~~~~~~~~~~~l-G--a~~--vi~~~~~~~~~~~~~~~~d~v~-d~ 218 (324)
T 3nx4_A 149 EVVVT-GASGGVGSTAVALLHKL---GYQVAAVSGRESTHGYLKSL-G--ANR--ILSRDEFAESRPLEKQLWAGAI-DT 218 (324)
T ss_dssp CEEES-STTSHHHHHHHHHHHHT---TCCEEEEESCGGGHHHHHHH-T--CSE--EEEGGGSSCCCSSCCCCEEEEE-ES
T ss_pred eEEEE-CCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhc-C--CCE--EEecCCHHHHHhhcCCCccEEE-EC
Confidence 48888 6 57898889899875 56999999999999999763 2 121 1111111112222 45799876 44
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.-. +.++.+.+.|+|+|.++.+
T Consensus 219 ~g~---~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 VGD---KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp SCH---HHHHHHHHTEEEEEEEEEC
T ss_pred CCc---HHHHHHHHHHhcCCEEEEE
Confidence 322 3788888999998887764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.029 Score=49.20 Aligned_cols=78 Identities=9% Similarity=0.020 Sum_probs=52.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHc--------------cCCCcEEEEEeCChhHHHHHHHHhcCC-C-CcEEEEEcchHHH
Q 041509 41 AQLMVVACANVANATTLALAAAA--------------HQTGGRVVCILRRVEEYKLSKKILGLD-A-SHVEFVIGDAQSL 104 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~--------------~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~-~~V~~~~gda~e~ 104 (211)
+-+|+|+ ||++|..|+.+...+ +.+.-+|+.-|.-.......-+.+..+ . .+-.|+.|.+..+
T Consensus 52 ~~~IaDl-GCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 52 RLAIADL-GCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp EECCEEE-SCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred ceEEEec-CCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3458999 999999988765541 233578899998888787776666521 1 1345666665543
Q ss_pred hhhc--cCCccEEEEcC
Q 041509 105 LLSH--FREADFVLIDC 119 (211)
Q Consensus 105 l~~l--~~~fD~VfiD~ 119 (211)
-.++ .+++|+||...
T Consensus 131 y~rlfp~~S~d~v~Ss~ 147 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSY 147 (359)
T ss_dssp SSCCSCTTCBSCEEEES
T ss_pred hhccCCCCceEEEEehh
Confidence 3333 68999999763
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.15 Score=44.06 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=60.3
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+.++||-+ | .++|..++.+|++. +.+|++++ +++..+.+++. +...-+.....+..+.+.+ ...+|+|
T Consensus 181 ~~~g~~VlV~-Ga~G~vG~~~~qla~~~---Ga~Vi~~~-~~~~~~~~~~l--Ga~~v~~~~~~~~~~~~~~-~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLIL-GASGGVGTFAIQVMKAW---DAHVTAVC-SQDASELVRKL--GADDVIDYKSGSVEEQLKS-LKPFDFI 252 (375)
T ss_dssp TCTTCEEEEE-TTTSHHHHHHHHHHHHT---TCEEEEEE-CGGGHHHHHHT--TCSEEEETTSSCHHHHHHT-SCCBSEE
T ss_pred cCCCCEEEEE-CCCCHHHHHHHHHHHhC---CCEEEEEe-ChHHHHHHHHc--CCCEEEECCchHHHHHHhh-cCCCCEE
Confidence 4567889999 6 67888888888875 56899998 67777777542 2111111111233333332 3579998
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|-..... . ..++...+.|+++|.++.+
T Consensus 253 id~~g~~-~-~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 253 LDNVGGS-T-ETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EESSCTT-H-HHHGGGGBCSSSCCEEEES
T ss_pred EECCCCh-h-hhhHHHHHhhcCCcEEEEe
Confidence 7544332 1 2356677889999987763
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.15 Score=43.50 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=59.7
Q ss_pred CeEEEE-ccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEEEEc
Q 041509 42 QLMVVA-CANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi-~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD 118 (211)
+.||=. +..++|..++.+|++. +.+|++++.+++..+.+++. +...-+.....|..+.+.++ ...+|+||-.
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~~--Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~ 240 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE---GFRPIVTVRRDEQIALLKDI--GAAHVLNEKAPDFEATLREVMKAEQPRIFLDA 240 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESCGGGHHHHHHH--TCSEEEETTSTTHHHHHHHHHHHHCCCEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc--CCCEEEECCcHHHHHHHHHHhcCCCCcEEEEC
Confidence 567664 2356788888888775 57999999999999988753 21111111112333333332 2479998754
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ..++.+.+.|+++|.++++-
T Consensus 241 ~g~----~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 241 VTG----PLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp SCH----HHHHHHHHHSCTTCEEEECC
T ss_pred CCC----hhHHHHHhhhcCCCEEEEEe
Confidence 442 23466778899999887643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.088 Score=44.27 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=58.5
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-+ |+ ++|..++.+|++. +.+|++++ +++..+.+++. . . + .++ .| . ..+.+.+|+|
T Consensus 139 ~~~~g~~VlV~-GaG~vG~~a~qlak~~---Ga~Vi~~~-~~~~~~~~~~l-G-a-~--~v~-~d-~---~~v~~g~Dvv 203 (315)
T 3goh_A 139 PLTKQREVLIV-GFGAVNNLLTQMLNNA---GYVVDLVS-ASLSQALAAKR-G-V-R--HLY-RE-P---SQVTQKYFAI 203 (315)
T ss_dssp CCCSCCEEEEE-CCSHHHHHHHHHHHHH---TCEEEEEC-SSCCHHHHHHH-T-E-E--EEE-SS-G---GGCCSCEEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCEEEEEE-ChhhHHHHHHc-C-C-C--EEE-cC-H---HHhCCCccEE
Confidence 34567899999 54 5788888899876 56999999 99988888763 2 1 1 122 24 2 2235789988
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|-..... .+..+.+.|+|+|.++.+
T Consensus 204 ~d~~g~~----~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDAVNSQ----NAAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC-----------TTGGGEEEEEEEEEE
T ss_pred EECCCch----hHHHHHHHhcCCCEEEEE
Confidence 7333222 235667889999988775
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.062 Score=45.44 Aligned_cols=91 Identities=14% Similarity=0.041 Sum_probs=56.3
Q ss_pred eEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcC
Q 041509 43 LMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~ 119 (211)
+||-+ |+ +.|..++.+|++. +.+|++++.+++..+.+++ +. ...-+.....+ .+.+..+ .+.+|+||-..
T Consensus 152 ~VlV~-Ga~G~vG~~~~q~a~~~---Ga~vi~~~~~~~~~~~~~~-lG-a~~~i~~~~~~-~~~~~~~~~~~~d~vid~~ 224 (328)
T 1xa0_A 152 PVLVT-GATGGVGSLAVSMLAKR---GYTVEASTGKAAEHDYLRV-LG-AKEVLAREDVM-AERIRPLDKQRWAAAVDPV 224 (328)
T ss_dssp CEEES-STTSHHHHHHHHHHHHT---TCCEEEEESCTTCHHHHHH-TT-CSEEEECC----------CCSCCEEEEEECS
T ss_pred eEEEe-cCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHH-cC-CcEEEecCCcH-HHHHHHhcCCcccEEEECC
Confidence 79999 74 7888888888875 5689999999988888875 22 11111111111 1222222 34799887544
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
... .++.+.+.|+++|.++++
T Consensus 225 g~~----~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 225 GGR----TLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp TTT----THHHHHHTEEEEEEEEEC
T ss_pred cHH----HHHHHHHhhccCCEEEEE
Confidence 332 466777888888887764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.21 Score=42.44 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=63.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCc--EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH-HhhhccCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGG--RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-LLLSHFREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g--~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e-~l~~l~~~fD~VfiD 118 (211)
++|.=| |+ |..+..+|..+...+- +|+.+|.+++.++.+++. +..+ -...|..+ .+ ...|+||+.
T Consensus 34 ~kI~II-G~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~--G~~~---~~~~~~~~~~~----~~aDvVila 101 (314)
T 3ggo_A 34 QNVLIV-GV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL--GIID---EGTTSIAKVED----FSPDFVMLS 101 (314)
T ss_dssp SEEEEE-SC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT--TSCS---EEESCTTGGGG----GCCSEEEEC
T ss_pred CEEEEE-ee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC--CCcc---hhcCCHHHHhh----ccCCEEEEe
Confidence 578888 75 4555555555544343 899999999888777542 2211 12344444 32 458999999
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.+.....+.++.+.+.++| |.+++ |..-.+
T Consensus 102 vp~~~~~~vl~~l~~~l~~-~~iv~-d~~Svk 131 (314)
T 3ggo_A 102 SPVRTFREIAKKLSYILSE-DATVT-DQGSVK 131 (314)
T ss_dssp SCGGGHHHHHHHHHHHSCT-TCEEE-ECCSCC
T ss_pred CCHHHHHHHHHHHhhccCC-CcEEE-ECCCCc
Confidence 8877788889999988887 55554 654433
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.093 Score=46.75 Aligned_cols=98 Identities=10% Similarity=0.155 Sum_probs=62.6
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-----------cch--
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-----------GDA-- 101 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-----------gda-- 101 (211)
...+.++||-+ | .++|..++.+|++. +.++++++.+++..+.+++. . ...-+.... .+.
T Consensus 225 ~~~~g~~VlV~-GasG~vG~~avqlak~~---Ga~vi~~~~~~~~~~~~~~l-G-a~~vi~~~~~d~~~~~~~~~~~~~~ 298 (456)
T 3krt_A 225 GMKQGDNVLIW-GASGGLGSYATQFALAG---GANPICVVSSPQKAEICRAM-G-AEAIIDRNAEGYRFWKDENTQDPKE 298 (456)
T ss_dssp CCCTTCEEEET-TTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHH-T-CCEEEETTTTTCCSEEETTEECHHH
T ss_pred CCCCCCEEEEE-CCCCHHHHHHHHHHHHc---CCeEEEEECCHHHHHHHHhh-C-CcEEEecCcCcccccccccccchHH
Confidence 44567889988 6 47888888888875 67999999999999988763 2 111111000 011
Q ss_pred ----HHHhhhc--cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 102 ----QSLLLSH--FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 102 ----~e~l~~l--~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+.+.++ ...+|+||-.... +.++.+.+.|+++|.++++
T Consensus 299 ~~~~~~~i~~~t~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 299 WKRFGKRIRELTGGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHhCCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEE
Confidence 1222322 3589988744332 4677778888998887763
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.39 Score=40.67 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=61.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C--CCCcEE--EEEcchHHHhhhccCCcc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L--DASHVE--FVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~--~~~~V~--~~~gda~e~l~~l~~~fD 113 (211)
.+|.=| |+| ..+..+|..+...+.+|+.+|.+++.++..++... + ...... ....|..+.+ ..+|
T Consensus 5 mki~ii-G~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D 77 (359)
T 1bg6_A 5 KTYAVL-GLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDAD 77 (359)
T ss_dssp CEEEEE-CCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCS
T ss_pred CeEEEE-CCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hcCC
Confidence 578888 875 44455555554445689999999988877766521 1 110011 1233444432 4689
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|++-.......+.++.+.+.+++ |.+++..
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~-~~~vv~~ 108 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISE-GQLIILN 108 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCT-TCEEEES
T ss_pred EEEEeCCchHHHHHHHHHHHhCCC-CCEEEEc
Confidence 999988777778889999888887 5555544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.41 Score=38.29 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=60.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH--HHhhhc-cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ--SLLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~--e~l~~l-~~~fD~Vfi 117 (211)
.++|+=+ |+ |..+..+++.+...+- |+.+|.+++.++.++ . .+.++.||+. +.+... -...|.|++
T Consensus 9 ~~~viI~-G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (234)
T 2aef_A 9 SRHVVIC-GW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR---S----GANFVHGDPTRVSDLEKANVRGARAVIV 77 (234)
T ss_dssp -CEEEEE-SC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---T----TCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred CCEEEEE-CC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---c----CCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence 4578877 76 6888889988876445 999999998876664 1 3788999986 344433 457899998
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
-.+.....-..-...+.+.|+..+++
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 78 DLESDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp CCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred cCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 76554333333334444566434443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.23 Score=44.09 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=62.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
.+|+=+ |+ |..+..+++.+...+-.|+.||.|++.++.+++. .+.++.||+.+ .|... -+..|.|++.
T Consensus 5 ~~viIi-G~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 5 MRVIIA-GF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CSEEEE-CC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CeEEEE-CC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 457766 65 6677777777766577899999999999888742 25678999854 45443 4689999987
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+.......+-...+.+.|.-.+++
T Consensus 76 ~~~~~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 76 IDDPQTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp CSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCChHHHHHHHHHHHHhCCCCeEEE
Confidence 7654333333344444566544444
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.21 Score=42.34 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=52.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc---cCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH---FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l---~~~fD~ 114 (211)
.+.-+++|+| ||+|-.++.+..+-- .-. |.++|+|+.+.+..+.|+.+ ..++.+|..++.... .+.+|+
T Consensus 14 ~~~~~vidLF-aG~GG~~~g~~~aG~--~~~~v~a~E~d~~a~~ty~~N~~~----~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLF-DGIATGLLVLKDLGI--QVDRYIASEVCEDSITVGMVRHQG----KIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEET-CTTTHHHHHHHHTTB--CEEEEEEECCCHHHHHHHHHHTTT----CEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeC-cCccHHHHHHHHCCC--ccceEEEEECCHHHHHHHHHhCCC----CceeCCChHHccHHHhcccCCcCE
Confidence 3455799996 999988777765421 112 69999999999888888652 357789988764321 257999
Q ss_pred EEEc
Q 041509 115 VLID 118 (211)
Q Consensus 115 VfiD 118 (211)
++..
T Consensus 87 l~gg 90 (295)
T 2qrv_A 87 VIGG 90 (295)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9876
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.5 Score=40.95 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=66.0
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc------C--CCCcEEEEEcchHHHhhhccCCc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG------L--DASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~------~--~~~~V~~~~gda~e~l~~l~~~f 112 (211)
..+|.=| |+ |..+..+|..+...+-+|+.++.+++.++..++.-. + +..++++ ..|..+.+ ...
T Consensus 29 ~mkI~VI-Ga--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----~~a 100 (356)
T 3k96_A 29 KHPIAIL-GA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----EGV 100 (356)
T ss_dssp CSCEEEE-CC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----TTC
T ss_pred CCeEEEE-Cc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----hcC
Confidence 3568888 76 455556666665545689999999998777665421 1 1233443 34554443 357
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|+||+--+.....+.++.+.+.++|+-.++.+-|-+..
T Consensus 101 DvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~ 138 (356)
T 3k96_A 101 TDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAK 138 (356)
T ss_dssp CEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence 99999877666788899999989875444443443433
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.093 Score=44.91 Aligned_cols=98 Identities=12% Similarity=-0.076 Sum_probs=56.6
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCc
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~f 112 (211)
+...+.++||-. |+ ++|..++.+|++.. +.+|++++ +++..+.++ +. ...-+. ...|..+.+.++ .+.+
T Consensus 138 ~~~~~g~~VlV~-Ga~G~vG~~a~qla~~~g--~~~V~~~~-~~~~~~~~~--~g-a~~~~~-~~~~~~~~~~~~~~~g~ 209 (349)
T 4a27_A 138 ANLREGMSVLVH-SAGGGVGQAVAQLCSTVP--NVTVFGTA-STFKHEAIK--DS-VTHLFD-RNADYVQEVKRISAEGV 209 (349)
T ss_dssp SCCCTTCEEEES-STTSHHHHHHHHHHTTST--TCEEEEEE-CGGGHHHHG--GG-SSEEEE-TTSCHHHHHHHHCTTCE
T ss_pred cCCCCCCEEEEE-cCCcHHHHHHHHHHHHcC--CcEEEEeC-CHHHHHHHH--cC-CcEEEc-CCccHHHHHHHhcCCCc
Confidence 344567889998 65 67777777776542 46899988 555556555 22 211122 223333333333 4589
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+||-..... .++.+.+.|+++|.++++-
T Consensus 210 Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 210 DIVLDCLCGD----NTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp EEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred eEEEECCCch----hHHHHHHHhhcCCEEEEEC
Confidence 9888544332 2467788899999887754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.14 Score=44.11 Aligned_cols=71 Identities=4% Similarity=-0.070 Sum_probs=50.0
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEE-EEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-c-cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRV-VCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-H-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v-~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l-~~~fD~Vfi 117 (211)
+-+++|+| ||+|-.++.+..+-- ..-.| .++|+|+.+.+..+.|+... ++++|..++... + ...+|+++.
T Consensus 10 ~~~vidLF-aG~GG~~~G~~~aG~-~~~~v~~a~e~d~~a~~ty~~N~~~~-----~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFF-SGIGGLRSSYERSSI-NINATFIPFDINEIANKIYSKNFKEE-----VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEET-CTTTHHHHHHHHSSC-CCCEEEEEECCCHHHHHHHHHHHCCC-----CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEEC-CChhHHHHHHHHcCC-CceEEEEEEECCHHHHHHHHHHCCCC-----cccCChhhcCHHHhccCCCCEEEe
Confidence 45799995 999988887766420 01356 79999999999999998731 456777665332 1 237899986
Q ss_pred c
Q 041509 118 D 118 (211)
Q Consensus 118 D 118 (211)
.
T Consensus 83 g 83 (327)
T 3qv2_A 83 S 83 (327)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=1.7 Score=35.11 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=64.1
Q ss_pred CCCeEEEEcccc----HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEEcchHHH------hhhc
Q 041509 40 NAQLMVVACANV----ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVIGDAQSL------LLSH 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg----~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~gda~e~------l~~l 108 (211)
+.+++|-. |++ .|. .+++.+...+.+|+.++.++...+.+++..+.. ..++.++..|..+. +...
T Consensus 6 ~~k~vlVT-Gasg~~GIG~---~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 6 EGRNIVVM-GVANKRSIAW---GIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp TTCEEEEE-CCCSTTSHHH---HHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred CCCEEEEE-cCCCCCcHHH---HHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 46788888 643 554 344444344789999999987766666655522 33788998886432 1111
Q ss_pred ---cCCccEEEEcCCcC------------cH--------------HHHHHHHHhcCCCCcEEEEEec
Q 041509 109 ---FREADFVLIDCNLE------------NH--------------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ---~~~fD~VfiD~~~~------------~y--------------~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+++|.++..+... .. ....+.+.+.++++|.++..-.
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 36899999875321 11 1245566777877777776543
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.25 Score=44.32 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=63.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----C---------CCCcEEEEEcchHHHhhh
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----L---------DASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~---------~~~~V~~~~gda~e~l~~ 107 (211)
-+|--| | .||.++.+|..+...+-+|+++|++++.++..++... + ...++++ ..|..+.+
T Consensus 9 ~~~~vI-G--lG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~-- 82 (446)
T 4a7p_A 9 VRIAMI-G--TGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV-- 82 (446)
T ss_dssp CEEEEE-C--CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH--
T ss_pred eEEEEE-c--CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH--
Confidence 345555 4 5777777777766556789999999998877655311 0 0123443 34554443
Q ss_pred ccCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 108 HFREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
...|+||+.-+.+ ...+.++.+.+.|++ |.++|......++
T Consensus 83 --~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~-g~iVV~~STv~pg 134 (446)
T 4a7p_A 83 --KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTK-PSVIVTKSTVPVG 134 (446)
T ss_dssp --TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCS-CCEEEECSCCCTT
T ss_pred --hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCC-CCEEEEeCCCCch
Confidence 3579999873222 246778888888987 6666655555565
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.18 Score=40.98 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=55.0
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCc----EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGG----RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g----~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+|.=| |+| ..+..++..+...+- +|+.+|.+++.++.+++.+. ++ ...+..+.+. ..|+||+-
T Consensus 4 ~i~iI-G~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g-----~~-~~~~~~e~~~----~aDvVila 70 (247)
T 3gt0_A 4 QIGFI-GCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYG-----LT-TTTDNNEVAK----NADILILS 70 (247)
T ss_dssp CEEEE-CCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHC-----CE-ECSCHHHHHH----HCSEEEEC
T ss_pred eEEEE-Ccc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhC-----CE-EeCChHHHHH----hCCEEEEE
Confidence 56777 754 445555555543233 89999999998877665432 11 2334455443 37999998
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.......+.++.+.+.++| |.+++
T Consensus 71 v~~~~~~~v~~~l~~~l~~-~~~vv 94 (247)
T 3gt0_A 71 IKPDLYASIINEIKEIIKN-DAIIV 94 (247)
T ss_dssp SCTTTHHHHC---CCSSCT-TCEEE
T ss_pred eCHHHHHHHHHHHHhhcCC-CCEEE
Confidence 8766788888888888887 55555
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.16 Score=42.83 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred eEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH--HHhhhc-cCCccEEEE
Q 041509 43 LMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ--SLLLSH-FREADFVLI 117 (211)
Q Consensus 43 ~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~--e~l~~l-~~~fD~Vfi 117 (211)
+||-+ | .+.|..++.+|++. +.+|++++.+++..+.+++. . .+.+ +.-+-. +.+..+ .+.+|+||-
T Consensus 153 ~VlV~-Ga~G~vG~~~~q~a~~~---Ga~vi~~~~~~~~~~~~~~l-G--a~~v--~~~~~~~~~~~~~~~~~~~d~vid 223 (330)
T 1tt7_A 153 SVLVT-GATGGVGGIAVSMLNKR---GYDVVASTGNREAADYLKQL-G--ASEV--ISREDVYDGTLKALSKQQWQGAVD 223 (330)
T ss_dssp CEEEE-STTSHHHHHHHHHHHHH---TCCEEEEESSSSTHHHHHHH-T--CSEE--EEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred eEEEE-CCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc-C--CcEE--EECCCchHHHHHHhhcCCccEEEE
Confidence 79999 6 57888888888876 56899999999888888753 2 1221 211111 111212 347998874
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.... +.++.+.+.|+++|.++++
T Consensus 224 ~~g~----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 224 PVGG----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp SCCT----HHHHHHHTTEEEEEEEEEC
T ss_pred CCcH----HHHHHHHHhhcCCCEEEEE
Confidence 4432 3577888889998887664
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.67 Score=38.88 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=60.0
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH-HhhhccCCc
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-LLLSHFREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e-~l~~l~~~f 112 (211)
+...+.++||-+ | .+.|..++.+|++. +.+|+++.. ++..+.+++. +. +. ++.-+..+ .... ...+
T Consensus 148 ~~~~~g~~vlV~-Ga~G~vG~~a~q~a~~~---Ga~vi~~~~-~~~~~~~~~l--Ga-~~--~i~~~~~~~~~~~-~~g~ 216 (321)
T 3tqh_A 148 AEVKQGDVVLIH-AGAGGVGHLAIQLAKQK---GTTVITTAS-KRNHAFLKAL--GA-EQ--CINYHEEDFLLAI-STPV 216 (321)
T ss_dssp TTCCTTCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEEC-HHHHHHHHHH--TC-SE--EEETTTSCHHHHC-CSCE
T ss_pred cCCCCCCEEEEE-cCCcHHHHHHHHHHHHc---CCEEEEEec-cchHHHHHHc--CC-CE--EEeCCCcchhhhh-ccCC
Confidence 456678899988 5 67788888888875 568998874 4446666653 22 21 22222222 2222 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-.... ..++.+.+.|+++|.++..
T Consensus 217 D~v~d~~g~----~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVGG----DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSCH----HHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCCc----HHHHHHHHhccCCCEEEEe
Confidence 988744332 2347788899998887764
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.50 E-value=0.33 Score=44.04 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=51.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh--------------
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL-------------- 106 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~-------------- 106 (211)
-+++|+| ||+|-.++.+-.+ +. .|.++|+|+.+.+..+.|+... ....++++|+.++..
T Consensus 89 ~~viDLF-aG~GGlslG~~~a----G~~~v~avE~d~~A~~ty~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 89 FRFIDLF-AGIGGIRRGFESI----GGQCVFTSEWNKHAVRTYKANHYCD-PATHHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp EEEEEES-CTTSHHHHHHHTT----TEEEEEEECCCHHHHHHHHHHSCCC-TTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred ceEEEec-CCccHHHHHHHHC----CCEEEEEEeCCHHHHHHHHHhcccC-CCcceeccchhhhhhccccccchhhHHhh
Confidence 3699996 9999877777643 33 4899999999999999998521 123467799887752
Q ss_pred --hccCCccEEEEc
Q 041509 107 --SHFREADFVLID 118 (211)
Q Consensus 107 --~l~~~fD~VfiD 118 (211)
.....+|+++..
T Consensus 163 i~~~~~~~Dvl~gG 176 (482)
T 3me5_A 163 IRQHIPEHDVLLAG 176 (482)
T ss_dssp HHHHSCCCSEEEEE
T ss_pred hhhcCCCCCEEEec
Confidence 123578999865
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.39 Score=34.61 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~Vfi 117 (211)
.++|+-+ |+ |..+..++..+...+.+|+.+|.+++..+.+++ ....++.+|..+ .+... .+.+|+|++
T Consensus 6 ~~~v~I~-G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~------~~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 6 NKQFAVI-GL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS------YATHAVIANATEENELLSLGIRNFEYVIV 76 (144)
T ss_dssp CCSEEEE-CC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT------TCSEEEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred CCcEEEE-CC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH------hCCEEEEeCCCCHHHHHhcCCCCCCEEEE
Confidence 3568888 75 677777777765556789999999876543321 123556777643 33322 357899998
Q ss_pred cCCcC-cHHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNLE-NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~~-~y~~~l~~~~~~L~pgG~viv 143 (211)
..... ..........+.+.++ .+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~ii~ 102 (144)
T 2hmt_A 77 AIGANIQASTLTTLLLKELDIP-NIWV 102 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCS-EEEE
T ss_pred CCCCchHHHHHHHHHHHHcCCC-eEEE
Confidence 77643 2222233333345554 4443
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=92.43 E-value=0.37 Score=41.20 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=56.4
Q ss_pred hhCCC-CeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhH----HHHHHHHhcCCCCcEEEEE---cchHHHhh
Q 041509 37 AGNNA-QLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEE----YKLSKKILGLDASHVEFVI---GDAQSLLL 106 (211)
Q Consensus 37 ~~~~~-~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~----~~~Ar~~~~~~~~~V~~~~---gda~e~l~ 106 (211)
...+. ++||-+ | .++|..++.+|++. +.+++++..+++. .+.+++ + |...-+.... .|..+.+.
T Consensus 163 ~~~~g~~~VlV~-Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~~~~-l-Ga~~vi~~~~~~~~~~~~~i~ 236 (364)
T 1gu7_A 163 KLTPGKDWFIQN-GGTSAVGKYASQIGKLL---NFNSISVIRDRPNLDEVVASLKE-L-GATQVITEDQNNSREFGPTIK 236 (364)
T ss_dssp CCCTTTCEEEES-CTTSHHHHHHHHHHHHH---TCEEEEEECCCTTHHHHHHHHHH-H-TCSEEEEHHHHHCGGGHHHHH
T ss_pred ccCCCCcEEEEC-CCCcHHHHHHHHHHHHC---CCEEEEEecCccccHHHHHHHHh-c-CCeEEEecCccchHHHHHHHH
Confidence 34456 889988 6 57888888898876 5688777655543 344432 2 3211111111 23333333
Q ss_pred hc----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 107 SH----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 107 ~l----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++ .+.+|+||-..... . ...+.+.|+++|.++.+
T Consensus 237 ~~t~~~~~g~Dvvid~~G~~---~-~~~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 237 EWIKQSGGEAKLALNCVGGK---S-STGIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHTCCEEEEEESSCHH---H-HHHHHHTSCTTCEEEEC
T ss_pred HHhhccCCCceEEEECCCch---h-HHHHHHHhccCCEEEEe
Confidence 22 34799987444321 2 23567889999987764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.52 Score=41.73 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=59.7
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--------------CCcEEEEEcchHHHhhhc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--------------ASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--------------~~~V~~~~gda~e~l~~l 108 (211)
+|.-| |+ ||.+..+|..+...+-+|+.+|.+++.++..++.-... ..++++ ..|..+.+.
T Consensus 2 kI~VI-G~--G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~-- 75 (436)
T 1mv8_A 2 RISIF-GL--GYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVL-- 75 (436)
T ss_dssp EEEEE-CC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHH--
T ss_pred EEEEE-CC--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhc--
Confidence 35556 64 55555655555444668999999999887665421100 123443 344444433
Q ss_pred cCCccEEEEcCCcCc----------HHHHHHHHHhcCCCC--cEEEEEecCCCCC
Q 041509 109 FREADFVLIDCNLEN----------HEGVLRAVQAGNKPN--GAVVVGYNAFRKG 151 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~----------y~~~l~~~~~~L~pg--G~viv~dn~~~~~ 151 (211)
..|+||+.-.... ..+.++.+.+.++++ |.+++.......+
T Consensus 76 --~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g 128 (436)
T 1mv8_A 76 --DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPG 128 (436)
T ss_dssp --TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTT
T ss_pred --cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCC
Confidence 5799999865432 677888888878762 4555533233344
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.14 E-value=1.3 Score=38.02 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=71.0
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---------------------CCCc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---------------------DASH 93 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---------------------~~~~ 93 (211)
++..+...||.+ |||....+..|.... .+.+++-||. |+.++.-++.+. . ..++
T Consensus 93 l~~~~~~qVV~L-GaGlDTr~~RL~~~~--~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 168 (334)
T 1rjd_A 93 LVANEKVQVVNL-GCGSDLRMLPLLQMF--PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGR 168 (334)
T ss_dssp HHHCSSEEEEEE-TCTTCCTHHHHHHHC--TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSS
T ss_pred HHHCCCcEEEEe-CCCCccHHHHhcCcC--CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCc
Confidence 333456779999 999998888887543 2567777777 888887777765 2 1478
Q ss_pred EEEEEcchHHH------hhhcc--CCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 94 VEFVIGDAQSL------LLSHF--READFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 94 V~~~~gda~e~------l~~l~--~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.+++..|..+. +.... +...+++..+- .+...+.++.+.... |+|.+++.|-+..
T Consensus 169 ~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 169 YKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp EEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 99999998653 22221 34566666553 234466777776655 6677776665433
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.02 E-value=2 Score=34.90 Aligned_cols=105 Identities=9% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC------------hhHHHHHHHHhcCCCCcEEEEEcchHHH--
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR------------VEEYKLSKKILGLDASHVEFVIGDAQSL-- 104 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~------------~~~~~~Ar~~~~~~~~~V~~~~gda~e~-- 104 (211)
.+.+++|-. |.+.| .+..+++.+...+.+|+.++.+ .+..+.+...+.....++.++..|..+.
T Consensus 8 l~gk~vlVT-Gas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 8 VQDKVVLVT-GGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred cCCCEEEEe-CCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 356788988 76444 3455666655557899999987 5555555555552346789999886542
Q ss_pred ----hhhc---cCCccEEEEcCCcC---------cH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 105 ----LLSH---FREADFVLIDCNLE---------NH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 105 ----l~~l---~~~fD~VfiD~~~~---------~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
+... .+++|.++..+... ++ ....+.+.+.++++|.++..-
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 1111 35899999876421 11 234456677777777776543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.63 Score=40.52 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=66.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhccCCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...+||-+ +-..|..|++|+. ..++.+.-+--.....+.|++ ++. +.|++... . ..+...||+|+
T Consensus 38 ~~~~~~~~-~d~~gal~~~~~~------~~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~---~~~~~~~~~v~ 105 (375)
T 4dcm_A 38 IRGPVLIL-NDAFGALSCALAE------HKPYSIGDSYISELATRENLRLNGIDESSVKFLDS--T---ADYPQQPGVVL 105 (375)
T ss_dssp CCSCEEEE-CCSSSHHHHHTGG------GCCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--T---SCCCSSCSEEE
T ss_pred CCCCEEEE-CCCCCHHHHhhcc------CCceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--c---cccccCCCEEE
Confidence 34679999 9999999888863 245666555555556777887 443 34665433 2 22357899999
Q ss_pred EcCCcC--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDCNLE--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~~~~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+--++. .....+..+...|.||+.++++..
T Consensus 106 ~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 106 IKVPKTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp EECCSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred EEcCCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 988776 456778888889999888776553
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.73 Score=39.33 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=36.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh---hHHHHHHHHhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV---EEYKLSKKILG 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~---~~~~~Ar~~~~ 88 (211)
.+...|||-+ ||+|.+++.... + +-+.+++|++| +..+.|++++.
T Consensus 241 ~~~~~vlDpF-~GsGtt~~aa~~-~---~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 241 HPGSTVLDFF-AGSGVTARVAIQ-E---GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CTTCEEEETT-CTTCHHHHHHHH-H---TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCCCEEEecC-CCCCHHHHHHHH-c---CCcEEEEECCccHHHHHHHHHHHHH
Confidence 5678899995 999976554443 3 57899999999 99999999987
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.73 Score=41.21 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=64.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC------------CCcEEEEEcchHHH
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD------------ASHVEFVIGDAQSL 104 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~------------~~~V~~~~gda~e~ 104 (211)
+..+-.+|--| |+ ||.+..+|..+.. +-+|+.+|++++.++..++..... ..++++ ..|..+.
T Consensus 32 r~~~~mkIaVI-Gl--G~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~-ttd~~ea 106 (432)
T 3pid_A 32 RGSEFMKITIS-GT--GYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA-TTDKHDA 106 (432)
T ss_dssp ---CCCEEEEE-CC--SHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHH
T ss_pred cccCCCEEEEE-Cc--CHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEE-EcCHHHH
Confidence 33344567777 65 6777777777766 779999999999888776532100 123433 3444444
Q ss_pred hhhccCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 105 LLSHFREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+ ...|+||+.-+.. ......+.+.+ |+| |.++|......++
T Consensus 107 ~----~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~-g~iVV~~STv~pg 158 (432)
T 3pid_A 107 Y----RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INP-NAVMIIKSTIPVG 158 (432)
T ss_dssp H----TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCT-TSEEEECSCCCTT
T ss_pred H----hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCC-CcEEEEeCCCChH
Confidence 3 3579999865432 23566777888 887 5666645555565
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=1.1 Score=37.14 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=61.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------C-C-C--------CcEEEEEcch
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------L-D-A--------SHVEFVIGDA 101 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~-~-~--------~~V~~~~gda 101 (211)
-++|.=| |+|. .+..+|..+...+-+|+.+|.+++.++.+++.+. + . . .++++ ..|.
T Consensus 4 ~~kV~VI-GaG~--mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~ 79 (283)
T 4e12_A 4 ITNVTVL-GTGV--LGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDL 79 (283)
T ss_dssp CCEEEEE-CCSH--HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCH
T ss_pred CCEEEEE-CCCH--HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCH
Confidence 3678888 8764 4444444443346799999999999888877642 1 0 0 12332 3343
Q ss_pred HHHhhhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSLLLSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+. -...|+|+.-.... .....++.+.+.++| +.+++ +|..
T Consensus 80 ~~~----~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~-~~il~-s~tS 122 (283)
T 4e12_A 80 AQA----VKDADLVIEAVPESLDLKRDIYTKLGELAPA-KTIFA-TNSS 122 (283)
T ss_dssp HHH----TTTCSEEEECCCSCHHHHHHHHHHHHHHSCT-TCEEE-ECCS
T ss_pred HHH----hccCCEEEEeccCcHHHHHHHHHHHHhhCCC-CcEEE-ECCC
Confidence 333 24689999876544 456788888888887 66554 6543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.68 Score=40.07 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.++++|+-+ |+| +|..++.++.+ .+.+|+.+|.+++..+.+++.+. ..+.....+..+. .+.-..+|+|+.
T Consensus 164 l~~~~V~Vi-GaG~iG~~~a~~l~~---~Ga~V~~~d~~~~~~~~~~~~~g---~~~~~~~~~~~~l-~~~~~~~DvVi~ 235 (369)
T 2eez_A 164 VAPASVVIL-GGGTVGTNAAKIALG---MGAQVTILDVNHKRLQYLDDVFG---GRVITLTATEANI-KKSVQHADLLIG 235 (369)
T ss_dssp BCCCEEEEE-CCSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTT---TSEEEEECCHHHH-HHHHHHCSEEEE
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHhcC---ceEEEecCCHHHH-HHHHhCCCEEEE
Confidence 457889999 653 44444444444 36799999999988877765443 2243333333332 222246899987
Q ss_pred cCCcCc--HHH-HHHHHHhcCCCCcEEE
Q 041509 118 DCNLEN--HEG-VLRAVQAGNKPNGAVV 142 (211)
Q Consensus 118 D~~~~~--y~~-~l~~~~~~L~pgG~vi 142 (211)
...... ... ..+...+.++++|.++
T Consensus 236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV 263 (369)
T 2eez_A 236 AVLVPGAKAPKLVTRDMLSLMKEGAVIV 263 (369)
T ss_dssp CCC-------CCSCHHHHTTSCTTCEEE
T ss_pred CCCCCccccchhHHHHHHHhhcCCCEEE
Confidence 654321 111 2456677788866543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.43 Score=39.18 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=55.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCc--EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccC-CccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGG--RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFR-EADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g--~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~-~fD~VfiD~ 119 (211)
+|.=| |+ |..+..++..+...+- +|+.+|.+++..+.+++. +... ....|..+.+ . ..|+||+-.
T Consensus 3 ~I~iI-G~--G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~--g~~~---~~~~~~~~~~----~~~aDvVilav 70 (281)
T 2g5c_A 3 NVLIV-GV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL--GIID---EGTTSIAKVE----DFSPDFVMLSS 70 (281)
T ss_dssp EEEEE-SC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT--TSCS---EEESCGGGGG----GTCCSEEEECS
T ss_pred EEEEE-ec--CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC--CCcc---cccCCHHHHh----cCCCCEEEEcC
Confidence 56777 75 4555555555543333 799999999887766532 2211 1123433332 3 689999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
......+.++.+.+.++++ .+++
T Consensus 71 p~~~~~~v~~~l~~~l~~~-~iv~ 93 (281)
T 2g5c_A 71 PVRTFREIAKKLSYILSED-ATVT 93 (281)
T ss_dssp CHHHHHHHHHHHHHHSCTT-CEEE
T ss_pred CHHHHHHHHHHHHhhCCCC-cEEE
Confidence 7766778888888888874 4444
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.48 E-value=0.7 Score=37.89 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=55.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH---hhhc-------
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL---LLSH------- 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~---l~~l------- 108 (211)
+.++||-. |++.| .+..+++.+...+.+|+.++.+++..+.+.+.+. ....++.++..|..+. +..+
T Consensus 11 ~~k~vlIT-Gas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 11 KRRCAVVT-GGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp -CCEEEES-SCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEe-cCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 45778888 65444 3456666655557899999999988877777776 3345799999887543 1111
Q ss_pred cCCccEEEEcCCc
Q 041509 109 FREADFVLIDCNL 121 (211)
Q Consensus 109 ~~~fD~VfiD~~~ 121 (211)
.+++|.++..+..
T Consensus 89 ~g~iD~lv~nAg~ 101 (311)
T 3o26_A 89 FGKLDILVNNAGV 101 (311)
T ss_dssp HSSCCEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 3689999998763
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.52 Score=36.28 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=44.8
Q ss_pred ccHHHHHH--HHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch---HHHhhhccCCccEEEEcCCcCc
Q 041509 50 NVANATTL--ALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA---QSLLLSHFREADFVLIDCNLEN 123 (211)
Q Consensus 50 tg~G~stl--~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda---~e~l~~l~~~fD~VfiD~~~~~ 123 (211)
.|+|-+|+ .||..+...+.+|..||.||..-.. ..+......+.++..+. .+.+..+.+.||+|++|++...
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT--NWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSL 87 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEECCSSS
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH--HHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 45565554 4666665556799999999875322 22332233466666554 2334444678999999998664
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.39 Score=39.39 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=56.5
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
+|.=| |+ |..+..++..+...+-+|+.+|.+++..+.+++. +...+ ...|.. .. ...|+|++.....
T Consensus 2 ~i~ii-G~--G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~~---~~~~~~----~~-~~~D~vi~av~~~ 68 (279)
T 2f1k_A 2 KIGVV-GL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER--QLVDE---AGQDLS----LL-QTAKIIFLCTPIQ 68 (279)
T ss_dssp EEEEE-CC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TSCSE---EESCGG----GG-TTCSEEEECSCHH
T ss_pred EEEEE-cC--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhC--CCCcc---ccCCHH----Hh-CCCCEEEEECCHH
Confidence 46667 65 5555566655544355899999999887766431 22111 123332 23 5689999988876
Q ss_pred cHHHHHHHHHhcCCCCcEEEE
Q 041509 123 NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 123 ~y~~~l~~~~~~L~pgG~viv 143 (211)
...+.++.+.+.++| |.+++
T Consensus 69 ~~~~~~~~l~~~~~~-~~~vv 88 (279)
T 2f1k_A 69 LILPTLEKLIPHLSP-TAIVT 88 (279)
T ss_dssp HHHHHHHHHGGGSCT-TCEEE
T ss_pred HHHHHHHHHHhhCCC-CCEEE
Confidence 678888888888887 55555
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=2.3 Score=35.09 Aligned_cols=104 Identities=10% Similarity=0.108 Sum_probs=64.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH-HHHHHHHhcCCCCcEEEEEcchHHH------hhh---cc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE-YKLSKKILGLDASHVEFVIGDAQSL------LLS---HF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~-~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~ 109 (211)
+.+++|-. |.+.| .+..+++.+...+.+|+.++.+++. .+.+.+.++....++.++.+|..+. +.. ..
T Consensus 46 ~gk~vlVT-Gas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLIT-GGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45788988 75544 3456666665557899999988753 4444444443346799999997542 111 13
Q ss_pred CCccEEEEcCCcC------------cH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLE------------NH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~------------~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
+++|.++..+... ++ ....+.+.+.++.+|.++..-
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 6899999875311 11 234556677777777766543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.31 Score=41.23 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=60.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH-hc--C-CCCcEEEE----EcchHHHhhhccCCcc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI-LG--L-DASHVEFV----IGDAQSLLLSHFREAD 113 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~-~~--~-~~~~V~~~----~gda~e~l~~l~~~fD 113 (211)
.+|+=| |+|. .+..+|..+...+-.|+.++.++. +..+++ +. . ....+++. ..|.. ...+.+|
T Consensus 3 mkI~Ii-GaGa--iG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~----~~~~~~D 73 (320)
T 3i83_A 3 LNILVI-GTGA--IGSFYGALLAKTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAA----ELETKPD 73 (320)
T ss_dssp CEEEEE-SCCH--HHHHHHHHHHHTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGG----GCSSCCS
T ss_pred CEEEEE-CcCH--HHHHHHHHHHhCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHH----HcCCCCC
Confidence 467778 7654 333444444333568999999872 444332 21 1 22333331 22222 2234799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+||+-.......+.++.+.+.+.++..++.+-|-+..
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~ 110 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDI 110 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSC
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCCh
Confidence 9999877666778899999999886666666676654
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.25 E-value=0.56 Score=40.13 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=59.2
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-c-hHHHhhhc-cC-C
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-D-AQSLLLSH-FR-E 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-d-a~e~l~~l-~~-~ 111 (211)
+...+.++||-+++.++|..++.+|++.. +.+|++++.+++..+.+++. . .+. ++.- + ..+.+.++ .+ .
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~--Ga~Vi~~~~~~~~~~~~~~l-G--a~~--vi~~~~~~~~~v~~~~~g~g 254 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT--PATVIALDVKEEKLKLAERL-G--ADH--VVDARRDPVKQVMELTRGRG 254 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHHHT-T--CSE--EEETTSCHHHHHHHHTTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHh-C--CCE--EEeccchHHHHHHHHhCCCC
Confidence 44566789999922466777777887651 46899999999999888742 2 121 1211 1 22333333 23 7
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+||-..... ....++.+.+. ++|.++..
T Consensus 255 ~Dvvid~~G~~-~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 255 VNVAMDFVGSQ-ATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp EEEEEESSCCH-HHHHHGGGGEE--EEEEEEEC
T ss_pred CcEEEECCCCc-hHHHHHHHhhc--CCCEEEEE
Confidence 99997443322 11156666665 67877654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.61 Score=40.93 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=60.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC------------CCcEEEEEcchHHHhhhccC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD------------ASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~------------~~~V~~~~gda~e~l~~l~~ 110 (211)
+|.-| |+ ||.+..+|..+.. +-+|+.+|.+++.++..++.-... ..++++ ..|..+.+.
T Consensus 2 kI~VI-G~--G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~~~~---- 72 (402)
T 1dlj_A 2 KIAVA-GS--GYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKA-TLDSKAAYK---- 72 (402)
T ss_dssp EEEEE-CC--SHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHHH----
T ss_pred EEEEE-CC--CHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEE-eCCHHHHhc----
Confidence 35556 54 7888888888876 778999999998777654321100 112332 334434333
Q ss_pred CccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 111 EADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 111 ~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..|+||+.-... ...+.++.+.+ ++| |.+++.......+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~-~~iVV~~ST~~~g 122 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNS-HATLIIKSTIPIG 122 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCS-SCEEEECSCCCTT
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCC-CCEEEEeCCCCcc
Confidence 479999976544 25777888888 887 5666633333444
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.6 Score=36.41 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS 107 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~ 107 (211)
.+....+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. .++..+..|..+. ...
T Consensus 22 ~Ms~rL~gKvalVT-Gas~GI-G~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 22 SMTQRLNAKIAVIT-GATSGI-GLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---GGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp ---CTTTTCEEEEE-SCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---TTCEEEECCTTCHHHHHHHHHH
T ss_pred hhcchhCCCEEEEe-CcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---CCeEEEEecCCCHHHHHHHHHH
Confidence 33334567888998 776664 355555555568999999999998877665553 3466677775432 111
Q ss_pred ---ccCCccEEEEcCCc-----------CcH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 108 ---HFREADFVLIDCNL-----------ENH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 ---l~~~fD~VfiD~~~-----------~~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
..++.|.++..+.. +++ -...+.+.+.|+.+|.++..-
T Consensus 97 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 15789999887521 111 233455567777777766543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.87 E-value=3.9 Score=34.26 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=54.2
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--CCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--DASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|.-+ |+|.=.+++....+.....++|+.+|++++.++.....+. . +...+++..+|. +. -...|+|++-.
T Consensus 2 kI~VI-GaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a----~~~aDvVIi~~ 75 (304)
T 2v6b_A 2 KVGVV-GTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-SE----LADAQVVILTA 75 (304)
T ss_dssp EEEEE-CCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-GG----GTTCSEEEECC
T ss_pred EEEEE-CCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-HH----hCCCCEEEEcC
Confidence 56677 7755444444433332223489999999986653222222 2 122344444443 22 24679999986
Q ss_pred CcCc----------------HHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 120 NLEN----------------HEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 120 ~~~~----------------y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.... ..++.+.+.+. .|++.++++.|..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 4321 25566666665 5778777766653
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=90.81 E-value=1.7 Score=36.62 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=60.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~Vfi 117 (211)
.++|+=+ |+ |..+..+++.+...+- |+.+|.||+..+ +++ ..+.++.||+.+ .+.+. -+..|.+++
T Consensus 115 ~~~viI~-G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~ 183 (336)
T 1lnq_A 115 SRHVVIC-GW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKANVRGARAVIV 183 (336)
T ss_dssp -CEEEEE-SC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHTCSTTEEEEEE
T ss_pred cCCEEEE-CC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhcChhhccEEEE
Confidence 3567777 65 7778888888866455 999999999887 653 247899999864 44433 468899998
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
..+.....-..-...+.+.|...+++
T Consensus 184 ~~~~d~~n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 184 DLESDSETIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp CCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred cCCccHHHHHHHHHHHHHCCCCeEEE
Confidence 76544332233334455666544443
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=90.74 E-value=1.4 Score=36.34 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=56.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hh---hcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LL---SHF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~---~l~ 109 (211)
.+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.++....++.++..|..+. .. +..
T Consensus 5 L~gKvalVT-Gas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 5 LKNKVVIVT-GAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GTTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 367888988 776664 3555555555589999999999988888777773346788899986432 11 115
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
++.|.++-.+
T Consensus 83 G~iDiLVNNA 92 (254)
T 4fn4_A 83 SRIDVLCNNA 92 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 7899999775
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.70 E-value=1 Score=38.92 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=58.9
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.++++|+-+ |+ +.|..++.++.++ +.+|+.+|.+++.++.+++.... .+..+..+..+.... -..+|+|+-
T Consensus 165 l~~~~VlVi-GaGgvG~~aa~~a~~~---Ga~V~v~dr~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~DvVI~ 236 (361)
T 1pjc_A 165 VKPGKVVIL-GGGVVGTEAAKMAVGL---GAQVQIFDINVERLSYLETLFGS---RVELLYSNSAEIETA-VAEADLLIG 236 (361)
T ss_dssp BCCCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHGG---GSEEEECCHHHHHHH-HHTCSEEEE
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHHhhCc---eeEeeeCCHHHHHHH-HcCCCEEEE
Confidence 356899999 65 4555555555554 56999999999988888765441 233333333232221 236899975
Q ss_pred cCCcCcH--HH-HHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 118 DCNLENH--EG-VLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 D~~~~~y--~~-~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
....+.. .. ..+...+.++|+|. ++ |-...++
T Consensus 237 ~~~~~~~~~~~li~~~~~~~~~~g~~-iv-dv~~~~g 271 (361)
T 1pjc_A 237 AVLVPGRRAPILVPASLVEQMRTGSV-IV-DVAVDQG 271 (361)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCE-EE-ETTCTTC
T ss_pred CCCcCCCCCCeecCHHHHhhCCCCCE-EE-EEecCCC
Confidence 5432210 01 13445667888664 33 5444443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.91 Score=38.29 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH-hc--CCCCcE--EEE-EcchHHHhhhccCCcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI-LG--LDASHV--EFV-IGDAQSLLLSHFREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~-~~--~~~~~V--~~~-~gda~e~l~~l~~~fD 113 (211)
...+|.-| |+|. .+..+|..+...+-.|+.+ .+++.++..+++ +. ...... .+. ..|.. . ...+|
T Consensus 18 ~~~kI~Ii-GaGa--~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~----~-~~~~D 88 (318)
T 3hwr_A 18 QGMKVAIM-GAGA--VGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS----A-VQGAD 88 (318)
T ss_dssp --CEEEEE-SCSH--HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG----G-GTTCS
T ss_pred cCCcEEEE-CcCH--HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH----H-cCCCC
Confidence 34678888 7753 3344444443335689999 998887776654 11 111111 111 12221 1 25799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+||+--......+.++.+.+.+.|+-.++.+-|-+..
T Consensus 89 ~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 89 LVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp EEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 9999887777888999999999886555555565543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=90.31 E-value=1.7 Score=35.00 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~ 110 (211)
+.+++|-. |.+.| .+..+++.+...+.+|+.++.+++..+.+.+.++....++.++..|..+. +... .+
T Consensus 5 ~~k~vlVT-Gas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIIT-GGSSG-MGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEET-TTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEE-CCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45778888 65444 34566666655578999999999988888777764446799999986542 1111 36
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999998764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=90.22 E-value=1.8 Score=35.46 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+++|-. |++.| .+..+++.+...+.+|+.++.+++..+.+.+.+.....++.++..|..+. +.. ..+
T Consensus 23 ~~k~~lVT-Gas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 23 RPQTAFVT-GVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp --CEEEEE-STTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEe-CCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 55788988 75544 34556665555578999999999888777776663346799999986542 111 136
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 101 ~id~lv~nAg 110 (279)
T 3sju_A 101 PIGILVNSAG 110 (279)
T ss_dssp SCCEEEECCC
T ss_pred CCcEEEECCC
Confidence 8999998763
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.21 E-value=1 Score=38.03 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=56.4
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhH---HH-HHHHHhc-CCCCcEEEEEc-chHHHhhhccCCccE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEE---YK-LSKKILG-LDASHVEFVIG-DAQSLLLSHFREADF 114 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~---~~-~Ar~~~~-~~~~~V~~~~g-da~e~l~~l~~~fD~ 114 (211)
.+|.-| |+ |+.+..+|..+...+ -+|+.+|.+++. .+ .+++..+ +. .. +..+.+. ..|+
T Consensus 25 m~IgvI-G~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~~~----~aDv 90 (317)
T 4ezb_A 25 TTIAFI-GF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAGIA----CADV 90 (317)
T ss_dssp CEEEEE-CC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGGGG----GCSE
T ss_pred CeEEEE-Cc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHHHh----cCCE
Confidence 568888 75 667777777776655 699999999831 11 1111112 32 33 4444433 4799
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
||+--......+.++.+.+.++| |.+++
T Consensus 91 Vi~avp~~~~~~~~~~i~~~l~~-~~ivv 118 (317)
T 4ezb_A 91 VLSLVVGAATKAVAASAAPHLSD-EAVFI 118 (317)
T ss_dssp EEECCCGGGHHHHHHHHGGGCCT-TCEEE
T ss_pred EEEecCCHHHHHHHHHHHhhcCC-CCEEE
Confidence 99988777667777888888887 55665
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.5 Score=42.31 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=38.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccC---CCcEEEEEeCChhHHHHHHHHhc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQ---TGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~---~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
.+-.|+|+ |.|.|..+.-+..+++. ...+++.||.+|.+.+.-++.+.
T Consensus 137 g~~~ivE~-GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 137 GTRRVMEF-GAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp TCCEEEEE-SCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCCeEEEe-CCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 35689999 99999998888776642 13489999999999888887775
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.12 E-value=2.3 Score=34.28 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=65.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--h-------hcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--L-------SHF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~-------~l~ 109 (211)
.+.+++|-. |.+.| .+..+++.+...+.+|+.++.+++.++...+.+. .++.++..|..+.- . +..
T Consensus 6 l~gk~~lVT-Gas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 6 YQGKKAIVI-GGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTTCEEEEE-TCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEE-CCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 356888988 76544 3456666665557899999999987776655542 46888888865421 1 113
Q ss_pred CCccEEEEcCCcC-----------cH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLE-----------NH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~-----------~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
+++|.++..+... ++ ....+.+.+.++++|.++..-
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 6899999875321 11 223455666666667766544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=90.08 E-value=3.3 Score=31.97 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=49.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+||-+ | ++|+.+..+++.+...+.+|+++..+++..... ....++++.+|..+.-....+.+|.||..+..
T Consensus 2 kilVt-G-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVL-G-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR------LGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp EEEEE-T-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------TCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred EEEEE-c-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc------cCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 47777 5 467777888877765578999999998754322 13568899999876432234678999987644
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.07 E-value=1.5 Score=36.04 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=56.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-c--CCCCcE--EEEEcchHHHhhhccCCccEEE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-G--LDASHV--EFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~--~~~~~V--~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+|.=| |+ |..+..+|..+...+.+|+.+|.+++.++..++.- . ...... .+...+..+... .-...|+||
T Consensus 4 m~i~ii-G~--G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi 79 (316)
T 2ew2_A 4 MKIAIA-GA--GAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDH-QNEQVDLII 79 (316)
T ss_dssp CEEEEE-CC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCT-TSCCCSEEE
T ss_pred CeEEEE-Cc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcc-cCCCCCEEE
Confidence 368888 76 44555555555444568999999998877665541 1 000000 000001111111 013799999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+........+.++.+.+.++|+ .+++
T Consensus 80 ~~v~~~~~~~v~~~l~~~l~~~-~~iv 105 (316)
T 2ew2_A 80 ALTKAQQLDAMFKAIQPMITEK-TYVL 105 (316)
T ss_dssp ECSCHHHHHHHHHHHGGGCCTT-CEEE
T ss_pred EEeccccHHHHHHHHHHhcCCC-CEEE
Confidence 9887666788888888888874 4444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=0.87 Score=39.61 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.++++|+-+ |+| .|..++.++.++ +.+|+.+|.+++..+.+++.+.. .+.....+..+. .++-...|+|+.
T Consensus 166 l~g~~V~Vi-G~G~iG~~~a~~a~~~---Ga~V~~~d~~~~~l~~~~~~~g~---~~~~~~~~~~~l-~~~l~~aDvVi~ 237 (377)
T 2vhw_A 166 VEPADVVVI-GAGTAGYNAARIANGM---GATVTVLDINIDKLRQLDAEFCG---RIHTRYSSAYEL-EGAVKRADLVIG 237 (377)
T ss_dssp BCCCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTT---SSEEEECCHHHH-HHHHHHCSEEEE
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHHhcCC---eeEeccCCHHHH-HHHHcCCCEEEE
Confidence 467889999 753 444444455543 66999999999988877765431 122222222222 222235899998
Q ss_pred cCCcCc--HHH-HHHHHHhcCCCCcEEE
Q 041509 118 DCNLEN--HEG-VLRAVQAGNKPNGAVV 142 (211)
Q Consensus 118 D~~~~~--y~~-~l~~~~~~L~pgG~vi 142 (211)
....+. ... ..+...+.++|||.++
T Consensus 238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV 265 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAHMKPGAVLV 265 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTTSCTTCEEE
T ss_pred CCCcCCCCCcceecHHHHhcCCCCcEEE
Confidence 542221 101 1345567788866443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=89.82 E-value=1.7 Score=36.23 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCc--EEEEEeCChhHHHH-HHHHhcC--CCCcEEEEEc-chHHHhhhccCCcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGG--RVVCILRRVEEYKL-SKKILGL--DASHVEFVIG-DAQSLLLSHFREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g--~v~tiE~~~~~~~~-Ar~~~~~--~~~~V~~~~g-da~e~l~~l~~~fD 113 (211)
++.+|.=| |+|.=. ..++..+...+- +|+.+|.+++.++. +...-++ ....+++... |. +. ....|
T Consensus 6 ~~mkI~Ii-GaG~vG--~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~----~~~aD 77 (319)
T 1lld_A 6 KPTKLAVI-GAGAVG--STLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EI----CRDAD 77 (319)
T ss_dssp -CCEEEEE-CCSHHH--HHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GG----GTTCS
T ss_pred CCCEEEEE-CCCHHH--HHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HH----hCCCC
Confidence 34678889 875433 333333322233 89999999876652 2221111 1123444433 32 22 24689
Q ss_pred EEEEcCCcCc----------------HHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 114 FVLIDCNLEN----------------HEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 114 ~VfiD~~~~~----------------y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+|++-..... ..+..+.+.+. .|++.++++.|..
T Consensus 78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 9999763221 12566666664 6777776666643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.91 Score=35.86 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.++||-+ | ++|+.+..+++.+...+.+|+.++.+++..+.... ..+ +++.+|..+.+....+.+|.||..
T Consensus 20 ~~~~ilVt-G-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVV-G-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE------RGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEE-T-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH------TTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCCeEEEE-C-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh------CCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 45789988 5 46777777777776557899999999886654332 257 888999864444445689999987
Q ss_pred CCc
Q 041509 119 CNL 121 (211)
Q Consensus 119 ~~~ 121 (211)
+..
T Consensus 92 ag~ 94 (236)
T 3e8x_A 92 AGS 94 (236)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=1.3 Score=39.45 Aligned_cols=91 Identities=9% Similarity=-0.044 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--------------CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--------------ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--------------~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|.||.++.+|..+...+-+|+++|++++.++..++.-... ..++++-. | ...-|+||
T Consensus 18 GlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt-d--------~~~aDvvi 88 (431)
T 3ojo_A 18 GLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST-T--------PEASDVFI 88 (431)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES-S--------CCCCSEEE
T ss_pred eeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC-c--------hhhCCEEE
Confidence 4567777777776655679999999999887765431100 12233321 2 12579999
Q ss_pred EcCCcC------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNLE------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~~------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.-+.+ ......+.+.+.|++ |.++|......++
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~-g~iVV~~STV~pg 134 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKK-GNTIIVESTIAPK 134 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCT-TEEEEECSCCCTT
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCC-CCEEEEecCCChh
Confidence 863322 135566778888987 6677755566666
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.85 Score=39.54 Aligned_cols=91 Identities=7% Similarity=-0.005 Sum_probs=62.2
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
..+|.=| |+ |..+..+|..+...+-+|+.+|.+++.++.+.+. +. . ...+..+.+.. ....|+||+--.
T Consensus 22 ~mkIgiI-Gl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~--g~----~-~~~s~~e~~~~-a~~~DvVi~~vp 90 (358)
T 4e21_A 22 SMQIGMI-GL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALERE--GI----A-GARSIEEFCAK-LVKPRVVWLMVP 90 (358)
T ss_dssp CCEEEEE-CC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--TC----B-CCSSHHHHHHH-SCSSCEEEECSC
T ss_pred CCEEEEE-Cc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC--CC----E-EeCCHHHHHhc-CCCCCEEEEeCC
Confidence 3578888 75 5666666666655567899999999877665432 21 1 13455565553 346799999876
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.....+.++.+.+.|++ |.++|
T Consensus 91 ~~~v~~vl~~l~~~l~~-g~iiI 112 (358)
T 4e21_A 91 AAVVDSMLQRMTPLLAA-NDIVI 112 (358)
T ss_dssp GGGHHHHHHHHGGGCCT-TCEEE
T ss_pred HHHHHHHHHHHHhhCCC-CCEEE
Confidence 66677888889888887 55555
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=89.60 E-value=1.5 Score=35.37 Aligned_cols=79 Identities=10% Similarity=-0.002 Sum_probs=54.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhc------cCC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSH------FRE 111 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l------~~~ 111 (211)
+.+++|-. |.+.|. +..+++.+...+.+|+.++.+++.++.+.+.++....++.++..|..+. +..+ .++
T Consensus 6 ~~k~vlVT-Gas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 6 RNATVAVI-GAGDYI-GAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CSCEEEEE-CCSSHH-HHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEE-CCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 55788888 765553 4556666555578999999999988877777763346799999986442 1111 168
Q ss_pred ccEEEEcCC
Q 041509 112 ADFVLIDCN 120 (211)
Q Consensus 112 fD~VfiD~~ 120 (211)
+|.++..+.
T Consensus 84 id~lv~nAg 92 (252)
T 3h7a_A 84 LEVTIFNVG 92 (252)
T ss_dssp EEEEEECCC
T ss_pred ceEEEECCC
Confidence 999998764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=89.56 E-value=1.1 Score=38.30 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred CCeEEEEcc-ccHHHHHHH--HHHHccCCCcEEEEEeCChhHHHH---HHHHhc-CCCCcEEEE-Ecc----h----HHH
Q 041509 41 AQLMVVACA-NVANATTLA--LAAAAHQTGGRVVCILRRVEEYKL---SKKILG-LDASHVEFV-IGD----A----QSL 104 (211)
Q Consensus 41 ~~~VLEi~G-tg~G~stl~--la~a~~~~~g~v~tiE~~~~~~~~---Ar~~~~-~~~~~V~~~-~gd----a----~e~ 104 (211)
++.|+=+ | .|+|-||+. ||..+.+.+++|.-+|.|...... .+...+ ....++.++ .+. . .+.
T Consensus 105 ~~vI~iv-G~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 105 LNIFMLV-GVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp CEEEEEE-SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 3345555 4 678888765 555555557899988888743221 112111 113457777 432 1 122
Q ss_pred hh-hccCCccEEEEcCCcC
Q 041509 105 LL-SHFREADFVLIDCNLE 122 (211)
Q Consensus 105 l~-~l~~~fD~VfiD~~~~ 122 (211)
+. .+...||+|++|.+..
T Consensus 184 l~~~~~~~yD~VIIDTpg~ 202 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGR 202 (320)
T ss_dssp HHHHHHTTCSEEEEECCCC
T ss_pred HHHHHhcCCCEEEEcCCCc
Confidence 22 1247899999998765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=89.54 E-value=1 Score=39.58 Aligned_cols=105 Identities=24% Similarity=0.162 Sum_probs=59.6
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEE--EEEcch-----------HH
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVE--FVIGDA-----------QS 103 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~--~~~gda-----------~e 103 (211)
++.+|+-+ |+| .|..++.++.++ +.+|+.+|.+++..+.+++ +. ...-.++ -..+.+ .+
T Consensus 183 ~~~kV~Vi-G~G~iG~~aa~~a~~l---Ga~V~v~D~~~~~l~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 183 KPASALVL-GVGVAGLQALATAKRL---GAKTTGYDVRPEVAEQVRS-VGAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp CCCEEEEE-SCSHHHHHHHHHHHHH---TCEEEEECSSGGGHHHHHH-TTCEECCCC-------------CHHHHHHHHH
T ss_pred CCCEEEEE-CchHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 67889999 776 566667777776 6799999999998888876 22 0000000 000111 12
Q ss_pred HhhhccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 104 LLLSHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.+.+.-...|+|+.-. ......=+.+...+.++| |.++| |-...+|
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~Mkp-GsVIV-DvA~d~G 306 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQP-GSVVV-DLAGETG 306 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCT-TCEEE-ETTGGGT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCC-CcEEE-EEeCCCC
Confidence 2233346899998642 111110123556667787 66665 6655554
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.41 E-value=2.1 Score=34.11 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--hhc-------cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--LSH-------FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l-------~~ 110 (211)
+.+++|-. |++.| .+..+++.+...+.+|+.++.+++..+...+.+.....++.++..|..+.- ..+ .+
T Consensus 8 ~~k~vlIT-Gas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVT-GSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEE-CCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788888 75444 456666666555789999999999887777766633467889999875421 111 35
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 86 ~id~li~~Ag 95 (253)
T 3qiv_A 86 GIDYLVNNAA 95 (253)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999998764
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.98 Score=37.26 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
.+|.=| |+ +|..+..++..+...+-+|+.+|.+++..+.+++ .+ ++. .+..+. -...|+||+-...
T Consensus 12 m~I~iI-G~-tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~--~g----~~~--~~~~~~----~~~aDvVi~av~~ 77 (286)
T 3c24_A 12 KTVAIL-GA-GGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG--MG----IPL--TDGDGW----IDEADVVVLALPD 77 (286)
T ss_dssp CEEEEE-TT-TSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH--TT----CCC--CCSSGG----GGTCSEEEECSCH
T ss_pred CEEEEE-CC-CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh--cC----CCc--CCHHHH----hcCCCEEEEcCCc
Confidence 468888 76 1455555555554445689999999988776654 12 111 132222 2468999998877
Q ss_pred CcHHHHHHHHHhcCCCCcEEEE
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv 143 (211)
....+.++.+.+.++| |.+++
T Consensus 78 ~~~~~v~~~l~~~l~~-~~ivv 98 (286)
T 3c24_A 78 NIIEKVAEDIVPRVRP-GTIVL 98 (286)
T ss_dssp HHHHHHHHHHGGGSCT-TCEEE
T ss_pred hHHHHHHHHHHHhCCC-CCEEE
Confidence 6678888888888877 55555
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.39 E-value=2.2 Score=34.50 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---cc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~ 109 (211)
.+.+++|-. |.+.|. +..+++.+...+.+|+.++.+++.++.+.+.+.....++.++..|..+. +.. ..
T Consensus 9 l~~k~vlVT-Gas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVIS-GVGPAL-GTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEE-SCCTTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEE-CCCcHH-HHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456888988 764443 3555555555578999999999888777776663346789999886542 111 14
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
+++|.++..+
T Consensus 87 g~id~lv~nA 96 (264)
T 3ucx_A 87 GRVDVVINNA 96 (264)
T ss_dssp SCCSEEEECC
T ss_pred CCCcEEEECC
Confidence 6899999876
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=89.31 E-value=0.31 Score=43.85 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=59.3
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC--------------CCCcEEEEEcchHHHhhh
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL--------------DASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~--------------~~~~V~~~~gda~e~l~~ 107 (211)
.+|--| | .||.++-+|..+...+-+|+++|+|++.++.-++.-.. ...+++| ..|..+.+.
T Consensus 22 ~~IaVi-G--lGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~-tt~~~~ai~- 96 (444)
T 3vtf_A 22 ASLSVL-G--LGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF-AESAEEAVA- 96 (444)
T ss_dssp CEEEEE-C--CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-CSSHHHHHH-
T ss_pred CEEEEE-c--cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE-EcCHHHHHh-
Confidence 456666 5 56777776666654467999999999887765432110 0123333 233333332
Q ss_pred ccCCccEEEEcCCc----------CcHHHHHHHHHhcCCC--CcEEEEEecCCCCC
Q 041509 108 HFREADFVLIDCNL----------ENHEGVLRAVQAGNKP--NGAVVVGYNAFRKG 151 (211)
Q Consensus 108 l~~~fD~VfiD~~~----------~~y~~~l~~~~~~L~p--gG~viv~dn~~~~~ 151 (211)
.-|++|+.-+. .......+.+.+.|++ +|.++|......+|
T Consensus 97 ---~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppG 149 (444)
T 3vtf_A 97 ---ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPG 149 (444)
T ss_dssp ---TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTT
T ss_pred ---cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCc
Confidence 35777765221 1235566677776764 36678877777777
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.21 E-value=2.9 Score=34.40 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=55.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---cc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~ 109 (211)
.+.+.+|-. |.+.| .+..+++.+...+.+|+.++.+++..+.+.+.+.....++.++..|..+. +.. ..
T Consensus 26 ~~~k~~lVT-Gas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 26 QPSPVALIT-GAGSG-IGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp -CCCEEEEE-SCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEE-CCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 356788888 76544 34556666555578999999999888777777764446789999987542 111 13
Q ss_pred CCccEEEEcCC
Q 041509 110 READFVLIDCN 120 (211)
Q Consensus 110 ~~fD~VfiD~~ 120 (211)
+++|.++..+.
T Consensus 104 g~iD~lVnnAg 114 (283)
T 3v8b_A 104 GHLDIVVANAG 114 (283)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 68999998754
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.09 E-value=1.2 Score=37.97 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=54.0
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcE-EEEEeCChh---HHHHHHHHhcCCCCcEEEEEcchH--HHhhhc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGR-VVCILRRVE---EYKLSKKILGLDASHVEFVIGDAQ--SLLLSH 108 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~-v~tiE~~~~---~~~~Ar~~~~~~~~~V~~~~gda~--e~l~~l 108 (211)
...+.++||-+ | .++|..++.+|++. +.+ +.+++.++. ..+.+++ + | .+. ++..+-. +.+.++
T Consensus 164 ~~~~g~~VlV~-Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~~~~-l-G-a~~--vi~~~~~~~~~~~~~ 234 (357)
T 1zsy_A 164 QLQPGDSVIQN-ASNSGVGQAVIQIAAAL---GLRTINVVRDRPDIQKLSDRLKS-L-G-AEH--VITEEELRRPEMKNF 234 (357)
T ss_dssp CCCTTCEEEES-STTSHHHHHHHHHHHHH---TCEEEEEECCCSCHHHHHHHHHH-T-T-CSE--EEEHHHHHSGGGGGT
T ss_pred ccCCCCEEEEe-CCcCHHHHHHHHHHHHc---CCEEEEEecCccchHHHHHHHHh-c-C-CcE--EEecCcchHHHHHHH
Confidence 45567899999 6 47899999999876 444 556666543 3445543 1 2 222 2222110 112222
Q ss_pred -cC--CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 -FR--EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 -~~--~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+ .+|+||-... . .....+.+.|+++|.++.+
T Consensus 235 ~~~~~~~Dvvid~~g-~---~~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 235 FKDMPQPRLALNCVG-G---KSSTELLRQLARGGTMVTY 269 (357)
T ss_dssp TSSSCCCSEEEESSC-H---HHHHHHHTTSCTTCEEEEC
T ss_pred HhCCCCceEEEECCC-c---HHHHHHHHhhCCCCEEEEE
Confidence 22 5898874333 2 2234567889999987764
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=89.03 E-value=1.6 Score=38.37 Aligned_cols=72 Identities=7% Similarity=-0.047 Sum_probs=48.8
Q ss_pred CChhHHHHHHHHHh-----hCCC--CeEEEEccccHHHHHHHHHHHccC-----CCcEEEEEeCChhHHHHHHHHhcCCC
Q 041509 24 KEPNEAEFISALAA-----GNNA--QLMVVACANVANATTLALAAAAHQ-----TGGRVVCILRRVEEYKLSKKILGLDA 91 (211)
Q Consensus 24 ~~~~~~~lL~~l~~-----~~~~--~~VLEi~Gtg~G~stl~la~a~~~-----~~g~v~tiE~~~~~~~~Ar~~~~~~~ 91 (211)
+++.-|++|...+. ...| -.|+|+ |.|.|..+.-+..++.. ..-+++-||.+|...+.-++.+...
T Consensus 57 is~~FGe~la~~~~~~w~~~g~p~~~~ivEl-GaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~- 134 (387)
T 1zkd_A 57 ISQMFGELLGLWSASVWKAADEPQTLRLIEI-GPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI- 134 (387)
T ss_dssp HCHHHHHHHHHHHHHHHHHTTCCSSEEEEEE-CCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcEEEEE-CCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-
Confidence 44555666665532 2222 259999 99999998888776532 1348999999999998888777632
Q ss_pred CcEEEE
Q 041509 92 SHVEFV 97 (211)
Q Consensus 92 ~~V~~~ 97 (211)
++|++.
T Consensus 135 ~~v~W~ 140 (387)
T 1zkd_A 135 RNIHWH 140 (387)
T ss_dssp SSEEEE
T ss_pred CCeEEe
Confidence 245543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.00 E-value=1.5 Score=39.26 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=51.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
.+|+=+ | .|-.+..+|+.+...+-.|+-||.|++.++.+.+.+. +..++||+.+ .|.+. -+..|+++.-
T Consensus 4 M~iiI~-G--~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~-----~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 4 MKIIIL-G--AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYD-----LRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp EEEEEE-C--CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS-----CEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred CEEEEE-C--CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC-----cEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 455544 4 4677788999887656789999999999988776643 6789999854 45443 3678988764
Q ss_pred CC
Q 041509 119 CN 120 (211)
Q Consensus 119 ~~ 120 (211)
.+
T Consensus 76 t~ 77 (461)
T 4g65_A 76 TN 77 (461)
T ss_dssp CS
T ss_pred cC
Confidence 33
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=1 Score=35.08 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=55.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC-CCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD-ASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~-~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+|+=+ | ++|..+..++..+...+.+|+.++.+++..+..++.+. .. ...+. ..+..+.+. ..|+|++-..
T Consensus 2 ~i~ii-G-a~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~D~Vi~~~~ 73 (212)
T 1jay_A 2 RVALL-G-GTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT--GMKNEDAAE----ACDIAVLTIP 73 (212)
T ss_dssp EEEEE-T-TTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE--EEEHHHHHH----HCSEEEECSC
T ss_pred eEEEE-c-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC--hhhHHHHHh----cCCEEEEeCC
Confidence 45556 5 25666667777665556789999999887765554332 00 12244 244444443 4799998877
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.....+.++.+.+.+ + +.+++
T Consensus 74 ~~~~~~~~~~l~~~~-~-~~~vi 94 (212)
T 1jay_A 74 WEHAIDTARDLKNIL-R-EKIVV 94 (212)
T ss_dssp HHHHHHHHHHTHHHH-T-TSEEE
T ss_pred hhhHHHHHHHHHHHc-C-CCEEE
Confidence 655666777666655 4 45544
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.88 E-value=2.7 Score=32.65 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc----cCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH----FREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l----~~~fD~Vf 116 (211)
+.-|||+ |=|.|-+=-.|.+-++ +-+|+.+|..-.. +-......=.++.||+.+.++.. ..+.-++-
T Consensus 41 ~GpVlEl-GLGNGRTydHLRe~~P--~R~I~vfDR~~~~------hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaH 111 (174)
T 3iht_A 41 SGPVYEL-GLGNGRTYHHLRQHVQ--GREIYVFERAVAS------HPDSTPPEAQLILGDIRETLPATLERFGATASLVH 111 (174)
T ss_dssp CSCEEEE-CCTTCHHHHHHHHHCC--SSCEEEEESSCCC------CGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEE
T ss_pred CCceEEe-cCCCChhHHHHHHhCC--CCcEEEEEeeecc------CCCCCCchHheecccHHHHHHHHHHhcCCceEEEE
Confidence 3459999 9999988778998885 6899999974211 01122344578999999998763 55677777
Q ss_pred EcCCcCcH------HH-HHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCNLENH------EG-VLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~~~~y------~~-~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.|-...+. .. .-..+.++|.| |+++|++..+.
T Consensus 112 aD~G~g~~~~d~a~a~~lsplI~~~la~-GGi~vS~~pl~ 150 (174)
T 3iht_A 112 ADLGGHNREKNDRFARLISPLIEPHLAQ-GGLMVSSDRMY 150 (174)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHHGGGEEE-EEEEEESSCCC
T ss_pred eecCCCCcchhHHHHHhhhHHHHHHhcC-CcEEEeCCccC
Confidence 77544322 22 33445667888 55677676554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=88.82 E-value=1 Score=37.03 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=56.7
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
..+|.=| |+| ..+..++..+... +.+|+.+|.+++..+.+++ .+... ....|..+.+ ...|+||+.
T Consensus 6 ~~~I~iI-G~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~--~g~~~---~~~~~~~~~~----~~aDvVila 73 (290)
T 3b1f_A 6 EKTIYIA-GLG--LIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE--RGIVD---EATADFKVFA----ALADVIILA 73 (290)
T ss_dssp CCEEEEE-CCS--HHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH--TTSCS---EEESCTTTTG----GGCSEEEEC
T ss_pred cceEEEE-eeC--HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH--cCCcc---cccCCHHHhh----cCCCEEEEc
Confidence 3578888 765 4444444444321 4589999999988776654 12211 1223433332 357999998
Q ss_pred CCcCcHHHHHHHHHhc-CCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAG-NKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~-L~pgG~viv 143 (211)
.......+.++.+.+. +++ |.+++
T Consensus 74 vp~~~~~~v~~~l~~~~l~~-~~ivi 98 (290)
T 3b1f_A 74 VPIKKTIDFIKILADLDLKE-DVIIT 98 (290)
T ss_dssp SCHHHHHHHHHHHHTSCCCT-TCEEE
T ss_pred CCHHHHHHHHHHHHhcCCCC-CCEEE
Confidence 8877678888888888 876 55555
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.70 E-value=4.8 Score=33.15 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh--hHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV--EEYKLSKKILGLDASHVEFVIGDAQSL------LLS---H 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~--~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l 108 (211)
+.+++|-. |.+.| .+..+++.+...+.+|+.++.+. +..+...+.++....++.++..|..+. +.. .
T Consensus 48 ~~k~vlVT-Gas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVT-GGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45788888 75444 35666666655578999998873 334444444442345788888886542 111 1
Q ss_pred cCCccEEEEcCCcC------------cH-----------HHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNLE------------NH-----------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~~------------~y-----------~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+++|.++..+... ++ ....+.+.+.++++|.|+..-.
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 36899999876421 01 2345566777777787776543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.67 E-value=2.9 Score=35.00 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=55.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhc----CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 43 LMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILG----LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~----~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
+|.=| |+|.=.++ ++..+...+ .+|+.+|++++.++.....+. .....+++...|. +. -...|+||
T Consensus 3 kI~VI-GaG~~G~~--la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~----~~~aDvVi 74 (309)
T 1hyh_A 3 KIGII-GLGNVGAA--VAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AA----LADADVVI 74 (309)
T ss_dssp EEEEE-CCSHHHHH--HHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GG----GTTCSEEE
T ss_pred EEEEE-CCCHHHHH--HHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HH----hCCCCEEE
Confidence 57778 76543333 333332223 589999999987755443332 1123355544554 33 24689999
Q ss_pred EcCCcCc--------------------HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 117 IDCNLEN--------------------HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 117 iD~~~~~--------------------y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+-..... ..+..+.+.+. .|++.++++.|.
T Consensus 75 iav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp 124 (309)
T 1hyh_A 75 STLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNP 124 (309)
T ss_dssp ECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred EecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCc
Confidence 9876433 25666666665 466777766664
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.89 Score=48.97 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=67.5
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcE-EEEEcchHHHhhhc--cC
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHV-EFVIGDAQSLLLSH--FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V-~~~~gda~e~l~~l--~~ 110 (211)
...++++||-. | .|+|..++.+|++. +.+|++++.+++..+.+++.+.++ .+.| .....+..+.+... ..
T Consensus 1664 ~l~~Ge~VLI~-gaaGgVG~aAiqlAk~~---Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A 1664 RMQPGESVLIH-SGSGGVGQAAIAIALSR---GCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGK 1739 (2512)
T ss_dssp CCCTTCEEEET-TTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSC
T ss_pred cCCCCCEEEEE-eCChHHHHHHHHHHHHc---CCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCC
Confidence 34677889988 5 68888888899875 679999999999999998866311 2222 21122333333222 24
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+|+||- +-. .+.++...+.|+|+|.++..
T Consensus 1740 GvDvVld-~~g---~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1740 GVDLVLN-SLA---EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp CEEEEEE-CCC---HHHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEE-CCC---chHHHHHHHhcCCCcEEEEe
Confidence 6999874 332 36688889999998887654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.54 E-value=2.7 Score=33.31 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+++|-. |.+.| .+..+++.+...+.+|+.++.+++..+...+.++....+++++..|..+. +.. ..+
T Consensus 4 ~~k~vlIT-Gas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVT-GASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEES-SCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEE-CCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45778888 65433 44566666655578999999999888777766663345789999986542 111 145
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 82 ~id~li~~Ag 91 (247)
T 3lyl_A 82 AIDILVNNAG 91 (247)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999998764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=88.47 E-value=4 Score=34.39 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=56.4
Q ss_pred CCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+..+|.-| |+|. |+. +....+......+|+-+|++++....|.........+++. .+|. +. ...-|+|++-
T Consensus 13 ~~~kV~Vi-GaG~vG~~-~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~-t~d~-~~----l~~aD~Vi~a 84 (303)
T 2i6t_A 13 TVNKITVV-GGGELGIA-CTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEI-SKDL-SA----SAHSKVVIFT 84 (303)
T ss_dssp -CCEEEEE-CCSHHHHH-HHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEE-ESCG-GG----GTTCSEEEEC
T ss_pred CCCEEEEE-CCCHHHHH-HHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE-eCCH-HH----HCCCCEEEEc
Confidence 34679999 9985 543 3322223222458999999986444454443311236665 3564 22 2467999998
Q ss_pred CCcC---------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 119 CNLE---------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 119 ~~~~---------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+..+ -..++++.+.+.- |.+.++++.|..
T Consensus 85 ag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~ 128 (303)
T 2i6t_A 85 VNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPV 128 (303)
T ss_dssp CCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChH
Confidence 6322 1356666666654 788888878854
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=1.9 Score=35.81 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=57.4
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-C-------------CcEEEEE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-A-------------SHVEFVI 98 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~-------------~~V~~~~ 98 (211)
++|.-| |+|. .+..+|..+...+-+|+.+|.+++.++.+++.+. +. . .++++ .
T Consensus 16 ~~I~VI-G~G~--mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~ 91 (302)
T 1f0y_A 16 KHVTVI-GGGL--MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-S 91 (302)
T ss_dssp CEEEEE-CCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-E
T ss_pred CEEEEE-CCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-e
Confidence 578888 8754 3333443333335689999999998887654321 21 1 13443 2
Q ss_pred cchHHHhhhccCCccEEEEcCCcCc--HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 99 GDAQSLLLSHFREADFVLIDCNLEN--HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~~~--y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.|..+. -...|+|++--.... ...+++.+.+.++| +.+++ .|.
T Consensus 92 ~~~~~~----~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~-~~iv~-s~t 136 (302)
T 1f0y_A 92 TDAASV----VHSTDLVVEAIVENLKVKNELFKRLDKFAAE-HTIFA-SNT 136 (302)
T ss_dssp SCHHHH----TTSCSEEEECCCSCHHHHHHHHHHHTTTSCT-TCEEE-ECC
T ss_pred cCHHHh----hcCCCEEEEcCcCcHHHHHHHHHHHHhhCCC-CeEEE-ECC
Confidence 343333 246899998765432 35678888888876 55554 543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.35 E-value=4 Score=34.54 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHH-HHHHhcC--CCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKL-SKKILGL--DASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~-Ar~~~~~--~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
++.+|.=| |+|.=.+++.+..+.....++|+.+|++++.++- +....+. +..++++..+|.. . ....|+|+
T Consensus 6 ~~~KI~Ii-GaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~-a----~~~aDvVi 79 (318)
T 1y6j_A 6 SRSKVAII-GAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS-D----VKDCDVIV 79 (318)
T ss_dssp -CCCEEEE-CCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGG-G----GTTCSEEE
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHH-H----hCCCCEEE
Confidence 45678889 7654333333333332224599999999876542 3332222 3346666655422 2 34679999
Q ss_pred EcCCcCc----------------HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 117 IDCNLEN----------------HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 117 iD~~~~~----------------y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+-+..+. ..++.+.+.+. .|++.+++..|.
T Consensus 80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp ECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 9765331 24455555554 688888876664
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.30 E-value=5 Score=28.05 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=46.0
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-------cHHHHHHHHHhc
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-------NHEGVLRAVQAG 134 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-------~y~~~l~~~~~~ 134 (211)
..+|.-+|-++...+..+..+....-.+. ...+..+.+..+ ..++|+|++|.... +-.+.++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVI-TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEE-EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh
Confidence 35799999999999888888873223344 556666665543 46799999997643 345666666654
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=88.23 E-value=1.6 Score=37.78 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=56.6
Q ss_pred eEEEEccccHHHHHHHHHHHccC-CCcEEEEEe---CChhHHHHHHHHhc------CCCC-cEE------EEEcchHHHh
Q 041509 43 LMVVACANVANATTLALAAAAHQ-TGGRVVCIL---RRVEEYKLSKKILG------LDAS-HVE------FVIGDAQSLL 105 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~-~~g~v~tiE---~~~~~~~~Ar~~~~------~~~~-~V~------~~~gda~e~l 105 (211)
+|.-| |+| ..+..+|..+.. .+..|+.++ .+++.++.+.+.-. .... .++ ....|..+.+
T Consensus 4 kI~Vi-GaG--~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (404)
T 3c7a_A 4 KVCVC-GGG--NGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI 80 (404)
T ss_dssp EEEEE-CCS--HHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred eEEEE-CCC--HHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence 57777 764 455566665543 256899999 77766655322110 0001 011 2333444332
Q ss_pred hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 106 LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...|+||+--......+.++.+.+.++| +.+++
T Consensus 81 ----~~aD~Vilav~~~~~~~v~~~l~~~l~~-~~ivv 113 (404)
T 3c7a_A 81 ----SGADVVILTVPAFAHEGYFQAMAPYVQD-SALIV 113 (404)
T ss_dssp ----TTCSEEEECSCGGGHHHHHHHHTTTCCT-TCEEE
T ss_pred ----CCCCEEEEeCchHHHHHHHHHHHhhCCC-CcEEE
Confidence 4689999988777778899999998887 55555
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.22 E-value=1.6 Score=35.29 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=57.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
++||-+ | + |+.+.++++.+...+-+|+++..++........ ..++++.+|..+. . ...+|.||.-+..
T Consensus 6 ~~ilVt-G-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~-~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSF-G-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA------SGAEPLLWPGEEP-S--LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEE-T-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH------TTEEEEESSSSCC-C--CTTCCEEEECCCC
T ss_pred CcEEEE-C-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh------CCCeEEEeccccc-c--cCCCCEEEECCCc
Confidence 579999 8 4 999999999887667799999999876544322 4589999998773 3 4678999987643
Q ss_pred C----c-HHHHHHHHHh
Q 041509 122 E----N-HEGVLRAVQA 133 (211)
Q Consensus 122 ~----~-y~~~l~~~~~ 133 (211)
. . ....++.+..
T Consensus 74 ~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 74 DSGGDPVLAALGDQIAA 90 (286)
T ss_dssp BTTBCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHh
Confidence 2 1 2445555544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.21 E-value=2.6 Score=33.95 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=52.8
Q ss_pred CCCCeEEEEccc---cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH------hhhc
Q 041509 39 NNAQLMVVACAN---VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL------LLSH 108 (211)
Q Consensus 39 ~~~~~VLEi~Gt---g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~------l~~l 108 (211)
.+.+++|-. |. |.|. .+++.+...+.+|+.++.+++..+.+.+.++ ....++.++..|..+. +...
T Consensus 20 l~~k~vlIT-Gasg~GIG~---~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 20 LKGKVVLVT-AAAGTGIGS---TTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTTCEEEES-SCSSSSHHH---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEE-CCCCCchHH---HHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 356788888 54 3554 3444443347899999999998887777775 3346899999997542 1111
Q ss_pred ---cCCccEEEEcCC
Q 041509 109 ---FREADFVLIDCN 120 (211)
Q Consensus 109 ---~~~fD~VfiD~~ 120 (211)
.+++|.++..+.
T Consensus 96 ~~~~g~id~li~~Ag 110 (266)
T 3o38_A 96 VEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCcEEEECCC
Confidence 358999998764
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=88.20 E-value=1.2 Score=40.16 Aligned_cols=101 Identities=15% Similarity=0.023 Sum_probs=57.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhcCC-------------CCcEEEEEcchHHHhh
Q 041509 42 QLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILGLD-------------ASHVEFVIGDAQSLLL 106 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~~~-------------~~~V~~~~gda~e~l~ 106 (211)
.+|.-| |+| |.+..+|..+... +-+|+.+|++++.++..++..... ..++++ ..|..+.+.
T Consensus 10 mkI~VI-G~G--~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~~~~ 85 (481)
T 2o3j_A 10 SKVVCV-GAG--YVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPKAIA 85 (481)
T ss_dssp CEEEEE-CCS--TTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHH
T ss_pred CEEEEE-CCC--HHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHhh
Confidence 467778 764 4444444443322 458999999999887665321100 112332 334434333
Q ss_pred hccCCccEEEEcCCcC---------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 107 SHFREADFVLIDCNLE---------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~---------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..|+||+.-..+ ...+.++.+.+.+++ |.++|......++
T Consensus 86 ----~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~-g~iVV~~STv~~g 140 (481)
T 2o3j_A 86 ----EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG-PKIVVEKSTVPVK 140 (481)
T ss_dssp ----HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS-CEEEEECSCCCTT
T ss_pred ----cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC-CCEEEECCCCCCC
Confidence 479999974221 146677888888887 6676643344555
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=0.12 Score=55.51 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=50.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC---CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT---GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~---~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..+|||| |.|+|..|..+...+... ..+.+-.|+++...+.|++.++.+ .++.-.=|..+.-+.....||+|+.
T Consensus 1241 ~~~ilEi-gagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1241 KMKVVEV-LAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--HVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp EEEEEEE-SCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--TEEEECCCSSCCCC-----CCEEEE
T ss_pred CceEEEE-CCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--ccccccccccccccCCCCceeEEEE
Confidence 4579999 999998877777666421 246788899998888888776521 1221100111100001346999997
Q ss_pred cCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ..+..+.++.+.++|+|||.+++..
T Consensus 1318 ~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1318 NCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp ECC--------------------CCEEEEEE
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 532 2245667888888999999877643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.16 E-value=1.4 Score=38.99 Aligned_cols=42 Identities=19% Similarity=0.066 Sum_probs=34.0
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
++.+|+-+ |+| .|..++.++.++ +.+|+.+|.+++..+.+++
T Consensus 189 ~~~kV~Vi-G~G~iG~~aa~~a~~l---Ga~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVM-GAGVAGLQAIATARRL---GAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEE-CCcHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHH
Confidence 67899999 876 566666677765 6799999999998888876
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=88.15 E-value=6 Score=31.96 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=64.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC-hhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---c
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR-VEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---H 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~-~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l 108 (211)
.+.+++|-. |.+.|. +..+++.+...+.+|+.++.+ ++..+...+.++....++.++..|..+. +.. .
T Consensus 16 l~~k~~lVT-Gas~gI-G~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 16 LDGKVALVT-GSGRGI-GAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp CTTCEEEES-CTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEE-CCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 355788888 765443 455666655557889887764 5555555555553346788999986542 111 1
Q ss_pred cCCccEEEEcCCcC-----------cH-----------HHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNLE-----------NH-----------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-----------~y-----------~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+++|.++..+... ++ ....+.+.+.++++|.++..-.
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 36899999775321 11 2344566777777788776554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=2.7 Score=37.81 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=61.3
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
++|.=| |+ |..+..||..+...+-+|+..+.+++..+...+...+ ..+. ...+..+.+.. .++.|+||+--..
T Consensus 16 ~~IgvI-Gl--G~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~--~gi~-~~~s~~e~v~~-l~~aDvVil~Vp~ 88 (480)
T 2zyd_A 16 QQIGVV-GM--AVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPG--KKLV-PYYTVKEFVES-LETPRRILLMVKA 88 (480)
T ss_dssp BSEEEE-CC--SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTT--SCEE-ECSSHHHHHHT-BCSSCEEEECSCS
T ss_pred CeEEEE-cc--HHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCC--CCeE-EeCCHHHHHhC-CCCCCEEEEECCC
Confidence 457777 65 4555666666655466899999999887766654321 1233 23455555442 2358999998776
Q ss_pred C-cHHHHHHHHHhcCCCCcEEEE
Q 041509 122 E-NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 122 ~-~y~~~l~~~~~~L~pgG~viv 143 (211)
. ...+.++.+.+.|+| |.++|
T Consensus 89 ~~~v~~vl~~l~~~l~~-g~iII 110 (480)
T 2zyd_A 89 GAGTDAAIDSLKPYLDK-GDIII 110 (480)
T ss_dssp SSHHHHHHHHHGGGCCT-TCEEE
T ss_pred HHHHHHHHHHHHhhcCC-CCEEE
Confidence 4 567888899888987 44554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.09 E-value=0.86 Score=37.01 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=55.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
.+|.=| |+| ..+..++..+...+-+ |+.+|.+++.++.+.+.+. +. ...+..+. -...|+|++-..
T Consensus 11 m~i~ii-G~G--~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g-----~~-~~~~~~~~----~~~~Dvvi~av~ 77 (266)
T 3d1l_A 11 TPIVLI-GAG--NLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE-----AE-YTTDLAEV----NPYAKLYIVSLK 77 (266)
T ss_dssp CCEEEE-CCS--HHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT-----CE-EESCGGGS----CSCCSEEEECCC
T ss_pred CeEEEE-cCC--HHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC-----Cc-eeCCHHHH----hcCCCEEEEecC
Confidence 468888 875 4444444444332345 8899999988776655432 22 12343333 246899999887
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.....+.++.+.+.+++ |.+++
T Consensus 78 ~~~~~~v~~~l~~~~~~-~~ivv 99 (266)
T 3d1l_A 78 DSAFAELLQGIVEGKRE-EALMV 99 (266)
T ss_dssp HHHHHHHHHHHHTTCCT-TCEEE
T ss_pred HHHHHHHHHHHHhhcCC-CcEEE
Confidence 66667888888887877 55554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=88.06 E-value=4.4 Score=34.33 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCC-CcEEEE-EeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQT-GGRVVC-ILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~-~g~v~t-iE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++.+|.=| |+|. .+-.++.++... +.++++ +|.+++.++.+.+.+. . .. ..|..+++. ...+|+|++
T Consensus 4 ~~~~vgii-G~G~--~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g-~----~~-~~~~~~~l~--~~~~D~V~i 72 (354)
T 3db2_A 4 NPVGVAAI-GLGR--WAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN-C----AG-DATMEALLA--REDVEMVII 72 (354)
T ss_dssp CCEEEEEE-CCSH--HHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT-C----CC-CSSHHHHHH--CSSCCEEEE
T ss_pred CcceEEEE-ccCH--HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-C----CC-cCCHHHHhc--CCCCCEEEE
Confidence 34568888 8864 444455555443 567664 5999987765544443 1 11 467777765 467999999
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
..+.....+....+.+ .|.-++++..+.
T Consensus 73 ~tp~~~h~~~~~~al~----~gk~vl~EKP~~ 100 (354)
T 3db2_A 73 TVPNDKHAEVIEQCAR----SGKHIYVEKPIS 100 (354)
T ss_dssp CSCTTSHHHHHHHHHH----TTCEEEEESSSC
T ss_pred eCChHHHHHHHHHHHH----cCCEEEEccCCC
Confidence 8877766666555554 345455566543
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=88.04 E-value=5 Score=27.76 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=49.4
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
+.+|.-+|-++...+..++.+......+. ...+..+.+..+ ..++|+|++|...+ +-.+.++.+... .|.-.+++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~ 84 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTV-LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR-GDQTPVLV 84 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEE-EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT-TCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc-CCCCCEEE
Confidence 56899999999998888888872222343 466777776654 46799999997644 335566666653 23333444
Q ss_pred Ee
Q 041509 144 GY 145 (211)
Q Consensus 144 ~d 145 (211)
..
T Consensus 85 ~t 86 (130)
T 3eod_A 85 IS 86 (130)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.02 E-value=2.8 Score=34.72 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=56.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhc-------c
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSH-------F 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l-------~ 109 (211)
.+.+.||-. |++.| .+..+++.+...+.+|+.++.+++.++.+.+.+.....++.++..|..+. +..+ .
T Consensus 29 l~gk~vlVT-Gas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 29 FDGRAAVVT-GGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp STTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEe-CCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 456789988 76544 34566666655578999999999988877777763345789999986542 1111 3
Q ss_pred CCccEEEEcCC
Q 041509 110 READFVLIDCN 120 (211)
Q Consensus 110 ~~fD~VfiD~~ 120 (211)
+++|.++..+.
T Consensus 107 g~id~lvnnAg 117 (301)
T 3tjr_A 107 GGVDVVFSNAG 117 (301)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 58999998764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=87.98 E-value=0.73 Score=39.79 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=62.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
++|.=| |+| ..+-.++.++...+.+|+.+|.+++.++.|++. +. + ...+..+.+..-....|+||+-.+.
T Consensus 9 ~kIgII-G~G--~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~--G~----~-~~~~~~e~~~~a~~~aDlVilavP~ 78 (341)
T 3ktd_A 9 RPVCIL-GLG--LIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDE--GF----D-VSADLEATLQRAAAEDALIVLAVPM 78 (341)
T ss_dssp SCEEEE-CCS--HHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHT--TC----C-EESCHHHHHHHHHHTTCEEEECSCH
T ss_pred CEEEEE-eec--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CC----e-eeCCHHHHHHhcccCCCEEEEeCCH
Confidence 568888 764 555556666654467899999999988777542 32 1 2355555554212357999999887
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
....+.++.+.+. +| |.+++ |..-.+
T Consensus 79 ~~~~~vl~~l~~~-~~-~~iv~-Dv~Svk 104 (341)
T 3ktd_A 79 TAIDSLLDAVHTH-AP-NNGFT-DVVSVK 104 (341)
T ss_dssp HHHHHHHHHHHHH-CT-TCCEE-ECCSCS
T ss_pred HHHHHHHHHHHcc-CC-CCEEE-EcCCCC
Confidence 6677788888775 66 55544 643333
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=87.95 E-value=5.8 Score=28.39 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=51.1
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCC-cEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDAS-HVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~-~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
-+|.-||-++...+..+..+..... ..-....+..+.+..+ ...+|+|++|.... +-.+.++.+.+. .|.-.+++
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~-~~~~~ii~ 99 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSE-KLETKVVV 99 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHT-TCSCEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCeEEE
Confidence 4799999999998888888873222 2334566677766544 46899999997644 446677777664 33344444
Q ss_pred Ee
Q 041509 144 GY 145 (211)
Q Consensus 144 ~d 145 (211)
..
T Consensus 100 ls 101 (150)
T 4e7p_A 100 VT 101 (150)
T ss_dssp EE
T ss_pred Ee
Confidence 33
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=87.80 E-value=1.5 Score=39.23 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=56.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHH------------hc-CCCCcEEEEEcchHHHhh
Q 041509 42 QLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKI------------LG-LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~------------~~-~~~~~V~~~~gda~e~l~ 106 (211)
.+|.-| |+| |.+..+|..+... +-+|+.+|++++.++..++. +. ....++++ ..|..+.+.
T Consensus 6 mkI~VI-G~G--~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~~ 81 (467)
T 2q3e_A 6 KKICCI-GAG--YVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAIK 81 (467)
T ss_dssp CEEEEE-CCS--TTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHH
T ss_pred cEEEEE-CCC--HHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHHh
Confidence 467778 764 4444444444322 46899999999877664321 10 00123433 344444433
Q ss_pred hccCCccEEEEcCCcCc---------------HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 107 SHFREADFVLIDCNLEN---------------HEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~~---------------y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..|+||+.-..+. .....+.+.+.+++ |.+++......++
T Consensus 82 ----~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~-g~iVV~~STv~~g 136 (467)
T 2q3e_A 82 ----EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNG-YKIVTEKSTVPVR 136 (467)
T ss_dssp ----HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCS-EEEEEECSCCCTT
T ss_pred ----cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCC-CCEEEECCcCCch
Confidence 4799998743211 35667778888887 6666633334444
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=1.7 Score=41.34 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=39.4
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCC---cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTG---GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL 104 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~---g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~ 104 (211)
.-+|||++ ||+|-+++-|-+|....+ -.+.++|+|+.+.+.-+.|+. ...+.++|+.++
T Consensus 212 ~ltvIDLF-AG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp----~~~~~~~di~~i 273 (784)
T 4ft4_B 212 TATLLDLY-SGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP----QTEVRNEKADEF 273 (784)
T ss_dssp EEEEEEET-CTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT----TSEEEESCHHHH
T ss_pred CCeEEEeC-cCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC----CCceecCcHHHh
Confidence 34699995 888888777766531101 257899999999999988864 133445555443
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=87.73 E-value=2.6 Score=33.97 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hh----h---cc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LL----S---HF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~----~---l~ 109 (211)
.+.++||-. |++. ..+..+++.+...+.+|+.++.+++..+...+.+.....+++++..|..+. +. . ..
T Consensus 27 l~~k~vlIT-Gas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 27 LSGQVAVVT-GASR-GIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTTCEEEES-STTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEE-CCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 355788888 6543 345666666655578999999999888777766663346789999986542 11 1 13
Q ss_pred CCccEEEEcCC
Q 041509 110 READFVLIDCN 120 (211)
Q Consensus 110 ~~fD~VfiD~~ 120 (211)
+++|.++..+.
T Consensus 105 g~id~lv~~Ag 115 (262)
T 3rkr_A 105 GRCDVLVNNAG 115 (262)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 68999998764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=87.70 E-value=3.5 Score=37.17 Aligned_cols=103 Identities=18% Similarity=0.085 Sum_probs=60.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCC-Cc-EEEEEeCChh----HHHHHHHHhcCC----------------CCcEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQT-GG-RVVCILRRVE----EYKLSKKILGLD----------------ASHVEF 96 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~-~g-~v~tiE~~~~----~~~~Ar~~~~~~----------------~~~V~~ 96 (211)
.+-.+|--| |+| |.+..+|..+... +- +|+.+|++++ .++..++..... ..++++
T Consensus 16 ~~~mkIaVI-GlG--~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ 92 (478)
T 3g79_A 16 GPIKKIGVL-GMG--YVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC 92 (478)
T ss_dssp CSCCEEEEE-CCS--TTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEE-CcC--HHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence 344678888 754 5555555544443 45 7999999998 666554421100 234444
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcC------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLE------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..| .+.+ ...|+||+.-+.+ ......+.+.+.|+| |.++|......++
T Consensus 93 -ttd-~ea~----~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~-g~iVV~~STv~pg 152 (478)
T 3g79_A 93 -TPD-FSRI----SELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKP-GMLVVLESTITPG 152 (478)
T ss_dssp -ESC-GGGG----GGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCT-TCEEEECSCCCTT
T ss_pred -eCc-HHHH----hcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCC-CcEEEEeCCCChH
Confidence 233 3332 3479999864221 135566778888887 5666655555665
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=87.66 E-value=4.2 Score=32.06 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=52.4
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~Vfi 117 (211)
.++||-+ | ++|..+..+++.+...+ .+|+.++.+++..+ .....+++++.+|..+. +......+|.||.
T Consensus 23 mk~vlVt-G-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~ 94 (236)
T 3qvo_A 23 MKNVLIL-G-AGGQIARHVINQLADKQTIKQTLFARQPAKIH------KPYPTNSQIIMGDVLNHAALKQAMQGQDIVYA 94 (236)
T ss_dssp CEEEEEE-T-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC------SSCCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEE-e-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhc------ccccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 3568877 5 46777788888887656 69999999876421 12245799999998543 3333467899998
Q ss_pred cCCcCcH
Q 041509 118 DCNLENH 124 (211)
Q Consensus 118 D~~~~~y 124 (211)
.+.....
T Consensus 95 ~a~~~~~ 101 (236)
T 3qvo_A 95 NLTGEDL 101 (236)
T ss_dssp ECCSTTH
T ss_pred cCCCCch
Confidence 7765544
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=1.3 Score=35.34 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=53.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccC-CCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhc-------c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQ-TGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSH-------F 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~-~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l-------~ 109 (211)
+.++||-. |. +|..+..+++.+.. .+.+|+.++.+++..+.+.+.+.....+++++.+|..+. +..+ .
T Consensus 3 ~~k~vlIT-Ga-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVT-GG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEES-SC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 45678877 64 45566777777655 578999999998877766666652235688898886542 1111 2
Q ss_pred CCccEEEEcCC
Q 041509 110 READFVLIDCN 120 (211)
Q Consensus 110 ~~fD~VfiD~~ 120 (211)
+++|.|+..+.
T Consensus 81 g~id~li~~Ag 91 (276)
T 1wma_A 81 GGLDVLVNNAG 91 (276)
T ss_dssp SSEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 48999997753
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.53 E-value=0.56 Score=40.58 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=56.2
Q ss_pred CCCCeEEEEcc---ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 39 NNAQLMVVACA---NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~G---tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
.+.++||-+ | .++|..++.+|++. +.+|++++.+++..+.+++. +...-+.....|..+.+.++ ...+|
T Consensus 169 ~~g~~vlV~-gag~G~vG~~a~q~a~~~---Ga~Vi~~~~~~~~~~~~~~l--Ga~~~~~~~~~~~~~~v~~~t~~~g~d 242 (379)
T 3iup_A 169 LEGHSALVH-TAAASNLGQMLNQICLKD---GIKLVNIVRKQEQADLLKAQ--GAVHVCNAASPTFMQDLTEALVSTGAT 242 (379)
T ss_dssp HTTCSCEEE-SSTTSHHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHT--TCSCEEETTSTTHHHHHHHHHHHHCCC
T ss_pred cCCCEEEEE-CCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHhC--CCcEEEeCCChHHHHHHHHHhcCCCce
Confidence 567788887 4 45777777788776 56899999999999988752 22222222223333433332 24799
Q ss_pred EEEEcCCcC-cHHHHHHHHHhc-CCCCcE
Q 041509 114 FVLIDCNLE-NHEGVLRAVQAG-NKPNGA 140 (211)
Q Consensus 114 ~VfiD~~~~-~y~~~l~~~~~~-L~pgG~ 140 (211)
+||-..... .....++.+... ++++|.
T Consensus 243 ~v~d~~g~~~~~~~~~~~l~~~~~r~~G~ 271 (379)
T 3iup_A 243 IAFDATGGGKLGGQILTCMEAALNKSARE 271 (379)
T ss_dssp EEEESCEEESHHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCchhhHHHHHHhcchhhhccccc
Confidence 887444333 234455554321 345443
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=87.45 E-value=2.6 Score=35.59 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCC-Cc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQT-GG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~-~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~ 114 (211)
.+.++||-. | |+|+.+.++++.+... +. +|+.++.++......++.+. ..+++++.+|..+. +......+|.
T Consensus 19 ~~~k~vlVT-G-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~D~ 94 (344)
T 2gn4_A 19 LDNQTILIT-G-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--DPRMRFFIGDVRDLERLNYALEGVDI 94 (344)
T ss_dssp TTTCEEEEE-T-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC--CTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred hCCCEEEEE-C-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 456789988 5 4677888888777554 44 89999999887665555444 35799999998653 3334567999
Q ss_pred EEEcCCc
Q 041509 115 VLIDCNL 121 (211)
Q Consensus 115 VfiD~~~ 121 (211)
||..+..
T Consensus 95 Vih~Aa~ 101 (344)
T 2gn4_A 95 CIHAAAL 101 (344)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9988754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.45 E-value=2.6 Score=34.37 Aligned_cols=79 Identities=8% Similarity=0.094 Sum_probs=53.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhh-------ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLS-------HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~-------l~~ 110 (211)
..+++|-. |++.|. +..+++.+...+.+|+.++.+++.++.+.+.+.....++.++..|..+. +.. ..+
T Consensus 3 ~~k~~lVT-Gas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 3 MDKVILIT-GASGGI-GEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TTCEEEES-STTSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35778888 765443 4556665555578999999999888777776663345788888886432 111 136
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 81 ~iD~lVnnAG 90 (264)
T 3tfo_A 81 RIDVLVNNAG 90 (264)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999998763
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=87.39 E-value=1.7 Score=35.88 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=54.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEE-EcchHHH--hhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFV-IGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~-~gda~e~--l~~l~~~fD~V 115 (211)
+.++||-. | |+|+.+.++++.+...+.+|++++.+++..+...+.+. ....+++++ .+|..+. +......+|.|
T Consensus 10 ~~~~vlVT-G-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 87 (342)
T 1y1p_A 10 EGSLVLVT-G-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp TTCEEEEE-T-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCEEEEE-C-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence 45788888 5 46788888887776557799999999876655444433 112578888 7887643 22233478999
Q ss_pred EEcCC
Q 041509 116 LIDCN 120 (211)
Q Consensus 116 fiD~~ 120 (211)
|..+.
T Consensus 88 ih~A~ 92 (342)
T 1y1p_A 88 AHIAS 92 (342)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 98764
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=2.2 Score=38.21 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=60.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
.+|.-| |+| ..+..++..+...+-+|+.++.+++..+...+...+ ..+. ...+..+.+.. .++.|+|++-...
T Consensus 6 ~~IgvI-G~G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~gi~-~~~s~~e~v~~-l~~aDvVilavp~ 78 (474)
T 2iz1_A 6 ANFGVV-GMA--VMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQD--KNLV-FTKTLEEFVGS-LEKPRRIMLMVQA 78 (474)
T ss_dssp BSEEEE-CCS--HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT--SCEE-ECSSHHHHHHT-BCSSCEEEECCCT
T ss_pred CcEEEE-eeH--HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcC--CCeE-EeCCHHHHHhh-ccCCCEEEEEccC
Confidence 357777 764 444555555544456899999999888776654321 1233 23455555442 2468999998776
Q ss_pred C-cHHHHHHHHHhcCCCCcEEEE
Q 041509 122 E-NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 122 ~-~y~~~l~~~~~~L~pgG~viv 143 (211)
. ...+.++.+.+.|+| |.+++
T Consensus 79 ~~~v~~vl~~l~~~l~~-g~iiI 100 (474)
T 2iz1_A 79 GAATDATIKSLLPLLDI-GDILI 100 (474)
T ss_dssp THHHHHHHHHHGGGCCT-TCEEE
T ss_pred chHHHHHHHHHHhhCCC-CCEEE
Confidence 4 567788888888887 45554
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=87.22 E-value=5.8 Score=28.48 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=50.9
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
..+|.-||-++...+..+..+....-.|. ...+..+.+..+ ..++|+|++|.... +-.+.++.+... .|.-.+++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~~ii~ 91 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLH-FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQ-YPSTTRIL 91 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH-CTTSEEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEE-EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhH-CCCCeEEE
Confidence 46899999999999988888883222343 566776666544 46899999997654 445666666653 23334444
Q ss_pred E
Q 041509 144 G 144 (211)
Q Consensus 144 ~ 144 (211)
.
T Consensus 92 ~ 92 (153)
T 3hv2_A 92 L 92 (153)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.21 E-value=3.1 Score=32.91 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=52.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch--H------HHhhh---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA--Q------SLLLS--- 107 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda--~------e~l~~--- 107 (211)
+.+++|-. |++.| .+..+++.+...+.+|+.++.+++..+...+.++ ....++.++..|. . +....
T Consensus 13 ~~k~vlIT-Gas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 13 KGRVILVT-GAARG-IGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TTCEEEES-STTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCCh-HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 55778888 65444 4556666665557899999999998887777776 3234567777665 1 11111
Q ss_pred ccCCccEEEEcCC
Q 041509 108 HFREADFVLIDCN 120 (211)
Q Consensus 108 l~~~fD~VfiD~~ 120 (211)
..+++|.++..+.
T Consensus 91 ~~g~id~lv~nAg 103 (247)
T 3i1j_A 91 EFGRLDGLLHNAS 103 (247)
T ss_dssp HHSCCSEEEECCC
T ss_pred hCCCCCEEEECCc
Confidence 1368999998764
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.18 E-value=7.4 Score=32.71 Aligned_cols=92 Identities=17% Similarity=0.083 Sum_probs=56.5
Q ss_pred eEEEEccccHHHHHHHHHHHccC-CCcEEEE-EeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVANATTLALAAAAHQ-TGGRVVC-ILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~-~~g~v~t-iE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+|.=| |+|. .+..++.++.. ++.++++ +|.+++.++.+.+.+. +.-...|..+++. ....|+|++..+
T Consensus 4 rvgiI-G~G~--~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~-----~~~~~~~~~~ll~--~~~~D~V~i~tp 73 (344)
T 3ezy_A 4 RIGVI-GLGR--IGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG-----VEKAYKDPHELIE--DPNVDAVLVCSS 73 (344)
T ss_dssp EEEEE-CCSH--HHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT-----CSEEESSHHHHHH--CTTCCEEEECSC
T ss_pred EEEEE-cCCH--HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC-----CCceeCCHHHHhc--CCCCCEEEEcCC
Confidence 56778 7763 33445555533 3567775 5999987766554433 1124577777765 467999999887
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.....++...+.+ .|.-++++-.+
T Consensus 74 ~~~h~~~~~~al~----~gk~v~~EKP~ 97 (344)
T 3ezy_A 74 TNTHSELVIACAK----AKKHVFCEKPL 97 (344)
T ss_dssp GGGHHHHHHHHHH----TTCEEEEESCS
T ss_pred CcchHHHHHHHHh----cCCeEEEECCC
Confidence 7766555555544 24444456543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.18 E-value=8.4 Score=31.27 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=64.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC-hhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---c
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR-VEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---H 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~-~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l 108 (211)
.+.+++|-. |++.| .+..+++.+...+.+|+.++.+ ++..+...+.++....++.++.+|..+. +.. .
T Consensus 29 l~gk~~lVT-Gas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 29 LAGKTAFVT-GGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CTTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356788988 76544 3455666655557889888655 4455555544542345788899886542 111 1
Q ss_pred cCCccEEEEcCCcC-----------cH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNLE-----------NH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-----------~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
.+++|.++..+... ++ ....+.+.+.++++|.++..-
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35899999876321 11 234555667777778777654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=87.13 E-value=3.1 Score=34.84 Aligned_cols=79 Identities=14% Similarity=0.062 Sum_probs=55.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH------hhh---c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL------LLS---H 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~------l~~---l 108 (211)
..++||-. |++.| .+.++++.+...+.+|+.++.+++..+.+.+.+. +...++.++..|..+. +.. .
T Consensus 7 ~~k~vlVT-Gas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVT-GGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEE-TTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEc-CCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45788888 75433 4566666665557899999999998887777665 3334799999986542 111 1
Q ss_pred cCCccEEEEcCC
Q 041509 109 FREADFVLIDCN 120 (211)
Q Consensus 109 ~~~fD~VfiD~~ 120 (211)
.+++|.++..+.
T Consensus 85 ~g~id~lv~nAg 96 (319)
T 3ioy_A 85 FGPVSILCNNAG 96 (319)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 368999998864
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.11 E-value=2.1 Score=35.48 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=57.7
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCC---cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTG---GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~---g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+|.=| |+| ..+..++..+...+ .+|+.+|.+++.++.+++.+. ++ ...|..+.+ ...|+||+-
T Consensus 4 ~~I~iI-G~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~g-----i~-~~~~~~~~~----~~aDvVila 70 (280)
T 3tri_A 4 SNITFI-GGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCG-----VH-TTQDNRQGA----LNADVVVLA 70 (280)
T ss_dssp SCEEEE-SCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTC-----CE-EESCHHHHH----SSCSEEEEC
T ss_pred CEEEEE-ccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcC-----CE-EeCChHHHH----hcCCeEEEE
Confidence 467778 775 44444454443322 279999999998877765432 22 234444443 357999998
Q ss_pred CCcCcHHHHHHHHHhc-CCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAG-NKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~-L~pgG~viv 143 (211)
-......+.++.+.+. +++ +.+++
T Consensus 71 v~p~~~~~vl~~l~~~~l~~-~~iii 95 (280)
T 3tri_A 71 VKPHQIKMVCEELKDILSET-KILVI 95 (280)
T ss_dssp SCGGGHHHHHHHHHHHHHTT-TCEEE
T ss_pred eCHHHHHHHHHHHHhhccCC-CeEEE
Confidence 8777788899999887 775 54555
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=87.09 E-value=2.6 Score=33.80 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=52.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch--HH------Hhhh---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA--QS------LLLS--- 107 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda--~e------~l~~--- 107 (211)
+.+++|-. |.+.| .+..+++.+...+.+|+.++.+++..+.+.+.+. ....++.++..|. .+ .+..
T Consensus 11 ~~k~vlVT-Gas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 11 NDRIILVT-GASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTCEEEEE-STTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence 55788888 75444 3456666665557899999999988777766665 2134677888776 21 1111
Q ss_pred ccCCccEEEEcCC
Q 041509 108 HFREADFVLIDCN 120 (211)
Q Consensus 108 l~~~fD~VfiD~~ 120 (211)
..+++|.++..+.
T Consensus 89 ~~g~id~lv~nAg 101 (252)
T 3f1l_A 89 NYPRLDGVLHNAG 101 (252)
T ss_dssp HCSCCSEEEECCC
T ss_pred hCCCCCEEEECCc
Confidence 1468999998764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=87.02 E-value=2.6 Score=34.01 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+++|-. |.+.|. +..+++.+...+.+|+.++.+++..+...+.+.....++.++..|..+. +.. ..+
T Consensus 11 ~~k~vlVT-Gas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVT-GAAAGI-GRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEEC-SCSSHH-HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEE-CCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45788888 655443 4555555544478999999999888777766663346789999886542 111 136
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 89 ~id~lv~nAg 98 (256)
T 3gaf_A 89 KITVLVNNAG 98 (256)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999998763
|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.02 E-value=4.4 Score=29.79 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCC-cEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHH
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDAS-HVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHE 125 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~-~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~ 125 (211)
.|+++.+.....-.. ..-+|.-||-++...+..+..+..... .+-....+..+.+..+ ...+|+|++|...+ +-.
T Consensus 9 ~~~~~~~~~~~~M~~-~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~ 87 (164)
T 3t8y_A 9 HHSSGLVPRGSHMTD-RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGI 87 (164)
T ss_dssp ----------------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHH
T ss_pred cccCCcccCcccccc-CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHH
Confidence 455555554444322 246899999999999888888873222 2222466777766544 45799999997644 345
Q ss_pred HHHHHHHh
Q 041509 126 GVLRAVQA 133 (211)
Q Consensus 126 ~~l~~~~~ 133 (211)
+.++.+..
T Consensus 88 ~l~~~lr~ 95 (164)
T 3t8y_A 88 EALKLIMK 95 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56666655
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=86.97 E-value=4.5 Score=32.92 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=54.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC---CCcEEEEEcchHHH------hhhc-
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD---ASHVEFVIGDAQSL------LLSH- 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~---~~~V~~~~gda~e~------l~~l- 108 (211)
.+.+++|-. |.+.| .+..+++.+...+.+|+.++.+++..+.+.+.++.. ..++.++.+|..+. +...
T Consensus 9 l~~k~vlVT-Gas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 9 FQDRTYLVT-GGGSG-IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp CTTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCEEEEe-CCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 356788888 65444 345666665555789999999998887777766621 23799999996542 1111
Q ss_pred --cCCccEEEEcCC
Q 041509 109 --FREADFVLIDCN 120 (211)
Q Consensus 109 --~~~fD~VfiD~~ 120 (211)
.+++|.++..+.
T Consensus 87 ~~~g~id~lv~nAg 100 (281)
T 3svt_A 87 AWHGRLHGVVHCAG 100 (281)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 368999998764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.96 E-value=4.1 Score=32.99 Aligned_cols=79 Identities=5% Similarity=0.007 Sum_probs=54.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--h----hh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--L----LS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l----~~---l~~ 110 (211)
..++||-. |.+ |..+..+++.+...+.+|+.++.+++..+...+.++....++.++.+|..+. + .. ..+
T Consensus 30 ~~k~vlIT-Gas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLIT-GAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEE-TTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEE-CCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 45778888 653 4456677766655578999999999877766655552235789999986542 1 11 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 108 ~iD~li~~Ag 117 (272)
T 1yb1_A 108 DVSILVNNAG 117 (272)
T ss_dssp CCSEEEECCC
T ss_pred CCcEEEECCC
Confidence 8999998764
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.92 E-value=1.5 Score=36.52 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=57.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeC--ChhHHHHHHHHhcCC--C---CcEEEEEc-chHHHhhhccCCccE
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILR--RVEEYKLSKKILGLD--A---SHVEFVIG-DAQSLLLSHFREADF 114 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~--~~~~~~~Ar~~~~~~--~---~~V~~~~g-da~e~l~~l~~~fD~ 114 (211)
+|.=| |+| ..+..+|..+...+.+|+.++. +++..+..++.-... . .++....- +..+. -...|+
T Consensus 2 ~I~ii-G~G--~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~D~ 74 (335)
T 1txg_A 2 IVSIL-GAG--AMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC----LENAEV 74 (335)
T ss_dssp EEEEE-SCC--HHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH----HTTCSE
T ss_pred EEEEE-CcC--HHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHH----HhcCCE
Confidence 46667 764 4444455444333568999999 888776655432100 0 12222210 33232 246899
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
||+........+.++.+.+ ++|+..++.+-|.+
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 9998877777888888988 88744444333444
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=86.89 E-value=6.8 Score=28.07 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
.-+|.-||-++...+..+..+....-.+. ...+..+.+..+ ..++|+|++|...+ +-.+.++.+...- |.-.+++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~-~~~~ii~ 84 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNII-TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY-PDIERVV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEE-EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC-TTSEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC-CCCcEEE
Confidence 46899999999999888888873223344 566777666544 45799999997654 4456666666532 3334444
Q ss_pred E
Q 041509 144 G 144 (211)
Q Consensus 144 ~ 144 (211)
.
T Consensus 85 l 85 (154)
T 2rjn_A 85 I 85 (154)
T ss_dssp E
T ss_pred E
Confidence 3
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 100.0 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 100.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.96 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.78 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.76 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.74 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.74 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.72 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.7 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.7 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.68 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.66 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.63 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.59 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.59 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.57 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.56 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.55 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.55 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.54 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.54 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.54 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.52 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.51 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.49 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.48 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.47 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.47 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.46 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.45 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.45 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.45 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.44 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.44 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 99.44 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.41 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.4 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.4 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.4 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.39 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.39 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.38 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.38 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.36 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.33 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.32 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.3 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.3 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.27 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.25 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.24 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.24 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.23 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.22 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.21 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.2 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.19 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.18 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.18 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.17 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.17 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.15 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.15 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.14 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.13 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.09 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.07 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.06 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.89 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.86 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.85 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.78 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.76 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.7 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.64 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.52 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.5 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.49 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.48 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.45 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.41 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.33 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.33 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.32 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.22 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.2 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.17 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.15 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.14 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.86 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.84 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.82 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.58 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.54 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.48 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.46 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.43 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.39 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.38 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.19 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.19 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.07 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.04 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.87 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.84 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.83 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.79 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.73 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.68 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.65 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.6 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.6 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.57 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.56 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.23 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.22 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.19 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.96 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.93 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.88 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.77 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.69 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.68 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.67 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.45 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 95.35 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.32 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.25 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.04 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 94.64 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.63 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.39 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.29 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.26 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.07 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 93.9 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.78 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.74 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.52 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.3 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.33 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.89 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.86 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.69 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 91.56 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.18 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.05 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.99 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 90.75 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.74 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.67 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.36 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 90.26 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.2 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.02 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.01 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.6 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.47 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 89.35 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.34 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.96 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.88 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 88.77 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.67 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 88.59 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 88.37 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 88.35 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 88.16 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.01 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 88.01 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 87.96 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.83 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.72 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 87.34 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 86.95 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 86.85 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 86.7 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.57 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 86.33 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.2 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.13 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 86.09 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.97 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 85.76 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 85.67 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 85.23 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 85.08 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 85.06 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 85.01 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 84.95 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 84.61 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.52 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 83.96 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 83.84 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 83.26 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 82.76 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.7 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 82.65 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 82.3 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 82.18 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 81.95 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 81.94 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 81.9 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 81.54 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.38 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 81.24 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.81 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 80.81 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 80.73 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 80.45 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 80.37 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.33 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 80.23 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 80.15 |
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=9e-36 Score=247.12 Aligned_cols=151 Identities=22% Similarity=0.278 Sum_probs=138.2
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++|.+|+||..+++..+|++|||| ||++||||+|+|+++++ +|+|+|+|.+|+.++.|+++++ +..++|++++|
T Consensus 41 m~~~~~~g~~L~~L~~~~~~k~iLEi-GT~~GyStl~la~al~~-~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g 118 (227)
T d1susa1 41 MTTSADEGQFLSMLLKLINAKNTMEI-GVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 118 (227)
T ss_dssp GSCCHHHHHHHHHHHHHHTCCEEEEE-CCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred cccCHHHHHHHHHHHHhcCCCcEEEe-cchhhhhHHHHHhhCCC-CcEEEEEeccchhHHHHHHHHHHhccccceeeeeh
Confidence 35889999999999999999999999 99999999999999975 8999999999999999999998 77889999999
Q ss_pred chHHHhhhc------cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce--------------------
Q 041509 100 DAQSLLLSH------FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW-------------------- 153 (211)
Q Consensus 100 da~e~l~~l------~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~-------------------- 153 (211)
++.+.++++ .++|||||+|+++++|.+|++.+.++|+||| ++++||++++|..
T Consensus 119 ~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gG-iii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~ 197 (227)
T d1susa1 119 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGG-VIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVL 197 (227)
T ss_dssp CHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTC-CEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCc-EEEEccCCCCCcccCCcccchHHHHHHHHHHHH
Confidence 999999876 4589999999999999999999999999966 5667999987620
Q ss_pred -------ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -------RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -------~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.|++++++++|+|||+.|++|.
T Consensus 198 ~~n~~i~~d~r~~~~llPigDGl~i~~K~ 226 (227)
T d1susa1 198 ELNKALAVDPRIEICMLPVGDGITICRRI 226 (227)
T ss_dssp HHHHHHHHCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHhcCCCEEEEEeecCCeeEEEEEC
Confidence 1699999999999999999875
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-35 Score=241.36 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=138.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++|++|+||..+++..+|++|||| |||+||||+|+|+++++ +|+|+|+|.+|+..+.|+++++ ++.++++++.|
T Consensus 41 ~~i~~~~g~lL~~L~~~~~~k~vLEi-Gt~~GyStl~~a~al~~-~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 41 SMMTCEQAQLLANLARLIQAKKALDL-GTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEE-CCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred cccCHHHHHHHHHHHHccCCCeEEEE-echhhHHHHHHHHhCCC-CceEEEEeechhHHHHHHHHHHhcCccceEEEEEe
Confidence 57999999999999999999999999 99999999999999975 8999999999999999999998 78899999999
Q ss_pred chHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------------e-----
Q 041509 100 DAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------------W----- 153 (211)
Q Consensus 100 da~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------------~----- 153 (211)
|+.+.++.+ .++|||||+|++++.|.+|++.+.++|+| |+++++||++++|. +
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~-GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~ 197 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRP-GGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIR 197 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEE-EEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHH
T ss_pred ehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcC-CcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHH
Confidence 999988765 56899999999999999999999999998 55677799999762 0
Q ss_pred ecCCCcEEEeecCCcEEEEEE
Q 041509 154 RSSGSKSQLLPIGEGLLVTRI 174 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~ 174 (211)
.|+++++++||+|||++|++|
T Consensus 198 ~d~r~~~~llPigdGl~ia~K 218 (219)
T d2avda1 198 RDVRVYISLLPLGDGLTLAFK 218 (219)
T ss_dssp HCTTEEEEEECSTTCEEEEEE
T ss_pred hCCCEEEEEeecCCeeEEEEe
Confidence 279999999999999999998
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=7.7e-29 Score=203.30 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=130.7
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++|++|++|..+++..+|++|||| |||+||||++||+++++ +|+|++||.++++++.|+++++ ++.++|+++.|
T Consensus 38 m~i~~~~G~lL~~lv~~~kpk~ILEi-Gt~~G~Sti~la~al~~-~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G 115 (214)
T d2cl5a1 38 MNVGDAKGQIMDAVIREYSPSLVLEL-GAYCGYSAVRMARLLQP-GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG 115 (214)
T ss_dssp CSCHHHHHHHHHHHHHHHCCSEEEEE-CCTTSHHHHHHHTTCCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEE-ccCchhHHHHHHHhCCC-ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec
Confidence 45899999999999999999999999 99999999999999864 8999999999999999999998 88899999999
Q ss_pred chHHHhhhc-----cCCccEEEEcCCcCcHHHH--HHHHHhcCCCCcEEEEEecCCCCCc-----e-e-cCCCcEE----
Q 041509 100 DAQSLLLSH-----FREADFVLIDCNLENHEGV--LRAVQAGNKPNGAVVVGYNAFRKGS-----W-R-SSGSKSQ---- 161 (211)
Q Consensus 100 da~e~l~~l-----~~~fD~VfiD~~~~~y~~~--l~~~~~~L~pgG~viv~dn~~~~~~-----~-~-~~~~~~v---- 161 (211)
|+.+.++.+ .++||+||+|++++.|..+ +.+..++|+|| +++|+||++++|. + + ++++.+.
T Consensus 116 d~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv~Ddvl~~g~~~~~~~vr~~~~~~~~~~~~ 194 (214)
T d2cl5a1 116 ASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLLADNVIVPGTPDFLAYVRGSSSFECTHYSS 194 (214)
T ss_dssp CHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCC-cEEEEeCcCCCCChHHHHHHhccCceeehhhhh
Confidence 999998765 2579999999999988764 45566789995 5778899999882 1 1 3444433
Q ss_pred ---EeecCCcEEEEEEecc
Q 041509 162 ---LLPIGEGLLVTRIAAA 177 (211)
Q Consensus 162 ---~lpig~Gl~v~~~~~~ 177 (211)
++|++||++++.+..+
T Consensus 195 ~~~~~~~~dgl~~s~~~g~ 213 (214)
T d2cl5a1 195 YLEYMKVVDGLEKAIYQGP 213 (214)
T ss_dssp ECTTSSSEEEEEEEEECCC
T ss_pred cceecccCCceEEEEecCC
Confidence 2799999999998654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.78 E-value=8.2e-19 Score=139.26 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=100.4
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
...+...++...+...+.++|||+ |||+|+.|+++|.. .++|+++|++|++++.|++|++ ++.++|++++||+
T Consensus 17 t~~eir~~il~~l~~~~g~~VLDi-GcGsG~~s~~lA~~----~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda 91 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPGKNDVAVDV-GCGTGGVTLELAGR----VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA 91 (186)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEE-SCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEE-ECCeEccccccccc----ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch
Confidence 344555666667788899999999 99999999998753 5799999999999999999998 6778999999999
Q ss_pred HHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.+.. ...||.||++....+..++++.+.+.|+|||.+++..
T Consensus 92 ~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 92 PEALCK-IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HHHHTT-SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcccc-cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence 998764 6799999999988889999999999999988877643
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=8.8e-19 Score=147.10 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=110.9
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
...|...++..-.++.|+.+.++..++...++.+|||+ |||+|+.|++||.++.+ +|+|+++|+++++++.|++|++
T Consensus 66 ~~~~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~-G~GsG~lt~~La~~vgp-~G~V~~~d~~~~~~~~Ar~n~~~ 143 (264)
T d1i9ga_ 66 LVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEA-GAGSGALTLSLLRAVGP-AGQVISYEQRADHAEHARRNVSG 143 (264)
T ss_dssp HHHHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCccccchHHHHHHHHHhCCCCCCEEEec-CcCCcHHHHHHHHhhCC-CcEEEEecCCHHHHHHHHHhhhh
Confidence 45577667766678999999999999999999999999 99999999999999875 8999999999999999999987
Q ss_pred ---CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 89 ---LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 89 ---~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...++++++++|+.+. +..++.||.||+|... ..++++.+.+.|+|||.+++.
T Consensus 144 ~~~~~~~nv~~~~~d~~~~-~~~~~~fDaV~ldlp~--P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 144 CYGQPPDNWRLVVSDLADS-ELPDGSVDRAVLDMLA--PWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp HHTSCCTTEEEECSCGGGC-CCCTTCEEEEEEESSC--GGGGHHHHHHHEEEEEEEEEE
T ss_pred hccCCCceEEEEecccccc-cccCCCcceEEEecCC--HHHHHHHHHhccCCCCEEEEE
Confidence 3468999999999875 2126899999999653 457788999999998877663
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=1.3e-18 Score=145.06 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=93.4
Q ss_pred HHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C
Q 041509 12 AYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L 89 (211)
Q Consensus 12 ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~ 89 (211)
.|...++.+..++.|+-+.++...+...++.+|||+ |||+|+.|++||+++.+ .|+|+++|.++++++.|++|++ +
T Consensus 57 ~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEi-G~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~ 134 (250)
T d1yb2a1 57 YFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEV-GVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFY 134 (250)
T ss_dssp GHHHHC------------------CCCCTTCEEEEE-CCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred HHHhhCCCCCcccCHHHHHHHHHHcCCCCcCEEEEe-eeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhc
Confidence 455566655577888888888888889999999999 99999999999999864 7999999999999999999997 4
Q ss_pred CCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 90 DASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 90 ~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
..++|++.++|..+.++ ++.||.||+|... ..++++.+.+.|+|||.+++
T Consensus 135 ~~~nv~~~~~Di~~~~~--~~~fD~V~ld~p~--p~~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 135 DIGNVRTSRSDIADFIS--DQMYDAVIADIPD--PWNHVQKIASMMKPGSVATF 184 (250)
T ss_dssp CCTTEEEECSCTTTCCC--SCCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEE
T ss_pred CCCceEEEEeeeecccc--cceeeeeeecCCc--hHHHHHHHHHhcCCCceEEE
Confidence 57899999999988755 5789999998653 45778999999999876655
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=3.3e-18 Score=143.69 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=110.9
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
...|...++....++.|+.+.++..++...++++|||+ |||+|+.|++||+++.+ +|+|+++|.++++++.|++|++
T Consensus 73 ~~d~~~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDi-G~GsG~lt~~lA~~~~~-~G~V~~vD~~~~~~~~A~~~~~~ 150 (266)
T d1o54a_ 73 LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDT-GVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTK 150 (266)
T ss_dssp HHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCccccchHHHHHHHHhhCCCCCCEEEEC-CCCCCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHH
Confidence 45677777766688999999999999999999999999 99999999999999864 8999999999999999999998
Q ss_pred -CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 89 -LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 89 -~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++.+++.+..+|..+..+ ...||.||+|.. +..++++.+.+.|+|||.+++
T Consensus 151 ~g~~~~v~~~~~d~~~~~~--~~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 151 WGLIERVTIKVRDISEGFD--EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp TTCGGGEEEECCCGGGCCS--CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEE
T ss_pred hccccCcEEEecccccccc--ccceeeeEecCC--CHHHHHHHHHhhcCCCCEEEE
Confidence 667899999999866543 468999999865 456789999999999887765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.9e-18 Score=145.02 Aligned_cols=130 Identities=21% Similarity=0.192 Sum_probs=107.0
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
...|...++....++.|+.+.++..++...++.+|||+ |||+|++|++||+++.+ +|+|+++|+++++++.|++|++
T Consensus 68 ~~d~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~-GtGsG~lt~~LAr~vg~-~G~V~t~E~~~~~~~~A~~n~~~ 145 (324)
T d2b25a1 68 LEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEA-GSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKH 145 (324)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCcccccccHHHHHHHhCCCCCCEEEEe-cccccHHHHHHHHHhCC-CcEEEEecCCHHHHHHHHHHHHH
Confidence 45677777766678999999999999999999999999 99999999999999865 8999999999999999999985
Q ss_pred -----------CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 89 -----------LDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 89 -----------~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...++|+++++|..+....+ ...||.||+|-.. ..++++.+.+.|+|||.+++
T Consensus 146 ~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~--P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 146 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp HHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEE
T ss_pred hhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcC--HHHHHHHHHHhccCCCEEEE
Confidence 23578999999988765433 4689999998653 34578899999999887766
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=2.3e-17 Score=134.00 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=95.3
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
...|..-..+..++...++.+|||| |||+||+|..||+.+.+ .++|+++|.++++++.|+++++ ...+++.++++|+
T Consensus 58 i~~P~~~a~~l~~l~l~~g~~VLdi-G~GtG~~s~~la~~~~~-~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~ 135 (213)
T d1dl5a1 58 SSQPSLMALFMEWVGLDKGMRVLEI-GGGTGYNAAVMSRVVGE-KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135 (213)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred eccchhhHHHHHhhhccccceEEEe-cCccchhHHHHHHHhCC-CCcEEEeecchhhHHHhhhhHhhhcccccccccCch
Confidence 3456654444455678889999999 99999999999998864 7999999999999999999998 5567899999999
Q ss_pred HHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.++. .++||.|++++..++.. +.+.+.|+|||.+++..
T Consensus 136 ~~~~~~-~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 136 YYGVPE-FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCGG-GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred HHcccc-ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEEE
Confidence 887664 67999999998877553 34456689999887743
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=3.7e-17 Score=134.13 Aligned_cols=117 Identities=12% Similarity=0.035 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
.+++..+.|...+...++++|||| |||+|..+..+++.. +.+|++||+++.+++.|+++.+ ++.++|+|+++|+
T Consensus 17 ~~~~~~~~l~~~~~l~pg~~VLDi-GCG~G~~~~~la~~~---~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 17 FTEEKYATLGRVLRMKPGTRILDL-GSGSGEMLCTWARDH---GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEE-TCTTCHHHHHHHHHT---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEE-cCCCCHHHHHHHHhc---CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH
Confidence 456666677777788889999999 999999999998763 5799999999999999999987 7788999999999
Q ss_pred HHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 102 QSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+..+ +++||+|+.-.. ..++...++++.+.|+|||.+++.+.
T Consensus 93 ~~~~~--~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGYVA--NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTCCC--SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhccc--cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 88643 689999986532 33678999999999999998888653
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.2e-17 Score=136.71 Aligned_cols=118 Identities=16% Similarity=0.107 Sum_probs=94.7
Q ss_pred CcCCChhH-HHHHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC----CC
Q 041509 21 QKAKEPNE-AEFISALA-AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD----AS 92 (211)
Q Consensus 21 ~~~~~~~~-~~lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~----~~ 92 (211)
+.+..|.. +.+|..|. ...++.+|||| |||+||+|..||+.+.+ .|+|++||.++++++.|+++++ +. ..
T Consensus 55 ~~is~P~~~a~~le~L~~~l~~g~~VLdi-G~GsGy~ta~la~l~~~-~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~ 132 (224)
T d1i1na_ 55 ATISAPHMHAYALELLFDQLHEGAKALDV-GSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 132 (224)
T ss_dssp EEECCHHHHHHHHHHTTTTSCTTCEEEEE-TCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred hhhhhhHHHHHHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHHhCC-CceEEEEcCCHHHHHHHHHhccccCccccccc
Confidence 34566665 56666654 45677899999 99999999999998764 7999999999999999999997 32 46
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++++++||+.+..+. .++||.|++++...... +.+.+.|+|||.+++.
T Consensus 133 ~~~~~~gD~~~~~~~-~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 133 RVQLVVGDGRMGYAE-EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLILP 180 (224)
T ss_dssp SEEEEESCGGGCCGG-GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred ceEEEEeecccccch-hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEEE
Confidence 899999999887664 68999999998876543 4456788998888763
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=1.2e-16 Score=130.00 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL 104 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~ 104 (211)
+...++|...+..++.++|||| |||+|..|..|++. .++|++||++++|++.|++++. ...+++.++++|+.+.
T Consensus 2 ~~~~~~l~~~~~~~~~~rILDi-GcGtG~~~~~la~~----~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 2 HHSLGLMIKTAECRAEHRVLDI-GAGAGHTALAFSPY----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEE-SCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred chHHHHHHHHhCCCCCCEEEEe-CCcCcHHHHHHHHh----CCeEEEEeCChhhhhhhhhhhcccccccccccccccccc
Confidence 4566788888899999999999 99999999999864 4799999999999999999987 3346799999999874
Q ss_pred hhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 105 LLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+..+++||+|+.-... .+...+++++.+.|+|||.+++++...
T Consensus 77 -~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 77 -PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp -CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred -cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 4336899999986543 367899999999999999888876543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.66 E-value=4.8e-17 Score=132.59 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=100.6
Q ss_pred HHHHHHHH-hh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 9 ATKAYLKT-LK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 9 ~~~ay~~~-~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
...||.|. ++ .++.+..|..-..+..++...+..+|||| |||+||+|..||.-+ +++|++||.++++++.|++
T Consensus 44 ~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l~~g~~VLeI-GsGsGY~taila~l~---g~~V~~ie~~~~l~~~a~~ 119 (215)
T d1jg1a_ 44 KKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEV-GTGSGWNAALISEIV---KTDVYTIERIPELVEFAKR 119 (215)
T ss_dssp GGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEE-CCTTSHHHHHHHHHH---CSCEEEEESCHHHHHHHHH
T ss_pred hhcccccCCcccchhhhhhhhhhHHHHHHhhccCccceEEEe-cCCCChhHHHHHHhh---CceeEEEeccHHHHHHHHH
Confidence 35567775 33 35567888864444455578889999999 999999999999765 4789999999999999999
Q ss_pred Hhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 86 ILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 86 ~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+++ ...+++++++||+.+..+. .++||.|++.+..+...+ .+.+.|+|||.+++.
T Consensus 120 ~l~~~g~~nv~~~~gd~~~g~~~-~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 120 NLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLIIP 175 (215)
T ss_dssp HHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEEE
T ss_pred HHHHcCCceeEEEECccccCCcc-cCcceeEEeecccccCCH---HHHHhcCCCCEEEEE
Confidence 998 4358999999999987664 789999999988765433 235567888887763
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.65 E-value=2.5e-16 Score=126.96 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHh
Q 041509 27 NEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 27 ~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l 105 (211)
+.+++|.. +...+.++|||| |||+|.+|.+++.. +.+|+++|+++++++.|+++++ ...++++++++|+.+.
T Consensus 3 ~~~~ll~~-~~l~~~~rVLDi-GcG~G~~~~~l~~~----~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l- 75 (231)
T d1vl5a_ 3 DLAKLMQI-AALKGNEEVLDV-ATGGGHVANAFAPF----VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM- 75 (231)
T ss_dssp CHHHHHHH-HTCCSCCEEEEE-TCTTCHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-
T ss_pred hHHHHHHh-cCCCCcCEEEEe-cccCcHHHHHHHHh----CCEEEEEECCHHHHhhhhhcccccccccccccccccccc-
Confidence 45555555 577788999999 99999999998754 5799999999999999999987 3357899999999875
Q ss_pred hhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 106 LSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+...++||+|++-... .+....++++.+.|+|||.+++.+...
T Consensus 76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred cccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4236899999977543 467889999999999999888877544
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.63 E-value=3.7e-16 Score=127.97 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=92.7
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG 99 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g 99 (211)
++.+..|.....+...+...+..+|||| |||+||+|..||+. .++|+++|.++++.+.|++++.. ..+++++++
T Consensus 50 g~~~~~p~~~a~ml~~L~l~~g~~VLdI-G~GsGy~ta~La~l----~~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~ 123 (224)
T d1vbfa_ 50 GINTTALNLGIFMLDELDLHKGQKVLEI-GTGIGYYTALIAEI----VDKVVSVEINEKMYNYASKLLSY-YNNIKLILG 123 (224)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEE-CCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHTT-CSSEEEEES
T ss_pred CCceehhhhHHHHHHHhhhcccceEEEe-cCCCCHHHHHHHHH----hcccccccccHHHHHHHHHHHhc-ccccccccC
Confidence 3345667765545556678899999999 99999999999875 47999999999999999999884 368999999
Q ss_pred chHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.....+. .++||.|++.+..+... +.+.+.|+|||.+++.
T Consensus 124 d~~~g~~~-~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 124 DGTLGYEE-EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP 164 (224)
T ss_dssp CGGGCCGG-GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred chhhcchh-hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence 99877664 68999999998776543 3456778999887763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.9e-15 Score=123.14 Aligned_cols=101 Identities=10% Similarity=-0.072 Sum_probs=84.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.++++|||| |||+|+++.++++.. ..+|++||++|++++.|+++++....+++++.+++.+....+ .++||.|+.
T Consensus 52 ~~g~~VLdI-GcG~G~~a~~~a~~~---~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f 127 (229)
T d1zx0a1 52 SKGGRVLEV-GFGMAIAASKVQEAP---IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 127 (229)
T ss_dssp TTCEEEEEE-CCTTSHHHHHHHTSC---EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCCeEEEe-eccchHHHHHHHHcC---CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence 467799999 999999999998642 468999999999999999998854577999999999887655 579999999
Q ss_pred cCCcC--------cHHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNLE--------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~~--------~y~~~l~~~~~~L~pgG~viv 143 (211)
|.... +...+++.+.++|+|||.+++
T Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 96432 346789999999999887665
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.59 E-value=2.8e-15 Score=125.24 Aligned_cols=108 Identities=11% Similarity=0.019 Sum_probs=90.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++.+|||| |||+|..+..|++.. +.+|++||+++.+++.|+++.. ++.++|+|+++|+.++ +...++||+
T Consensus 64 ~l~~~~~vLDi-GcG~G~~~~~la~~~---~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQAKGLDL-GAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDF 138 (282)
T ss_dssp CCCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEE
T ss_pred CCCCCCEEEEe-CCCCcHHHhhhhccC---CcEEEEEeccchhhhhhhcccccccccccccccccccccc-cccccccch
Confidence 34577899999 999999999998764 5699999999999999999987 7888999999999886 423689999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|+.-.. .++...+++++.+.|+|||.+++.+....
T Consensus 139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 987543 34678899999999999999888765443
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.59 E-value=9.4e-16 Score=125.42 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=93.7
Q ss_pred CcCCChhH-HHHHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccCC----CcEEEEEeCChhHHHHHHHHhc--C---
Q 041509 21 QKAKEPNE-AEFISALA-AGNNAQLMVVACANVANATTLALAAAAHQT----GGRVVCILRRVEEYKLSKKILG--L--- 89 (211)
Q Consensus 21 ~~~~~~~~-~~lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~~----~g~v~tiE~~~~~~~~Ar~~~~--~--- 89 (211)
+.+..|.. +.+|..|. ...+.++|||| |||+||+|..|++.+.+. +++|++||.++++++.|++|+. .
T Consensus 59 ~~is~P~~~a~~l~~L~~~l~~g~~VLeI-GtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~ 137 (223)
T d1r18a_ 59 VTISAPHMHAFALEYLRDHLKPGARILDV-GSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 137 (223)
T ss_dssp EEECCHHHHHHHHHHTTTTCCTTCEEEEE-SCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhhHHHHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence 34566664 66776663 56678999999 999999999999887531 3599999999999999999975 1
Q ss_pred -CCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 90 -DASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 90 -~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|+++++|+.+..+. .++||.|++++..+...+ .+.+.|+|||.+++.
T Consensus 138 ~~~~nv~~~~~d~~~~~~~-~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 138 LDSGQLLIVEGDGRKGYPP-NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIVP 189 (223)
T ss_dssp HHHTSEEEEESCGGGCCGG-GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEEE
T ss_pred cCccEEEEEeccccccccc-ccceeeEEEEeechhchH---HHHHhcCCCcEEEEE
Confidence 136899999999987664 689999999998875543 346778998888763
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.57 E-value=6.3e-15 Score=113.27 Aligned_cols=109 Identities=10% Similarity=0.024 Sum_probs=87.4
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
...+-...+.++|||+ |||+|..++.++.. ...+|++||.|+++++.+++|++ +..++++++++|+.+.++...
T Consensus 6 fn~l~~~~~g~~vlDl-~~GtG~~~iea~~r---ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~ 81 (152)
T d2esra1 6 FNMIGPYFNGGRVLDL-FAGSGGLAIEAVSR---GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 81 (152)
T ss_dssp HHHHCSCCCSCEEEEE-TCTTCHHHHHHHHT---TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHhhCCCCeEEEc-CCccCHHHHHHHHh---Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc
Confidence 3444444578999999 89999998876643 24699999999999999999998 667889999999999888778
Q ss_pred CCccEEEEcCCc--CcHHHHHHHHHh--cCCCCcEEEEE
Q 041509 110 READFVLIDCNL--ENHEGVLRAVQA--GNKPNGAVVVG 144 (211)
Q Consensus 110 ~~fD~VfiD~~~--~~y~~~l~~~~~--~L~pgG~viv~ 144 (211)
++||+||+|++- ..+...++.+.. .|+|+|.+++-
T Consensus 82 ~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 82 GRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 899999999863 356777777754 48887666553
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=6.4e-15 Score=117.03 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=90.4
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHh
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l 105 (211)
.++|...+...+.++|||+ |||+|+.++.++.. ..+|+++|+|+.+++.|++|++ ++. .+++++.+|..+.+
T Consensus 41 t~lLi~~l~~~~~~~VLDi-GcG~G~~~~~la~~----~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~ 115 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDL-GCGYGVIGIALADE----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEE-TCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred HHHHHHhCCcCCCCeEEEE-eecCChhHHHHHhh----ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh
Confidence 4566666677789999999 99999999998864 4589999999999999999998 443 47999999998754
Q ss_pred hhccCCccEEEEcCCcC----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 106 LSHFREADFVLIDCNLE----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+ +++||+|+++.... ....+++.+.+.|+|||.+++..+
T Consensus 116 ~--~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 116 K--DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp T--TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 4 57999999987532 236688999999999988776543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=7.9e-15 Score=125.78 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=89.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc---cCCcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH---FREAD 113 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l---~~~fD 113 (211)
.+.++|||+ |||+|..++++|.+- ..+|+++|.++++++.|++|++ ++.++++++++|+.+.+..+ .++||
T Consensus 144 ~~g~~VLDl-~~g~G~~si~~a~~g---a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD 219 (324)
T d2as0a2 144 QPGDRVLDV-FTYTGGFAIHAAIAG---ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 219 (324)
T ss_dssp CTTCEEEET-TCTTTHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCeeecc-cCcccchhhhhhhcC---CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence 457899999 799999999988652 4699999999999999999998 66789999999999876544 57999
Q ss_pred EEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 114 FVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 114 ~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+|++|.+. ..|.+.+..+.++|+|||.++.+.|..
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999863 257889999999999999888877643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=1.2e-14 Score=120.83 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=86.6
Q ss_pred HHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 30 EFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 30 ~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
-.|..+.. ..++++|||+ |||+|..++++++. +.+|+++|+||++++.|++|++...-+++++++|..+.++
T Consensus 109 l~l~~l~~~~~~g~~VLDi-GcGsG~l~i~aa~~----g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~-- 181 (254)
T d2nxca1 109 LALKALARHLRPGDKVLDL-GTGSGVLAIAAEKL----GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP-- 181 (254)
T ss_dssp HHHHHHHHHCCTTCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--
T ss_pred HHHHHHHhhcCccCEEEEc-ccchhHHHHHHHhc----CCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccccc--
Confidence 34444443 3567899999 99999999877652 6799999999999999999998212246889999988655
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||+|+.+.......+.++.+.+.|+|||.+++.+
T Consensus 182 ~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 182 FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 5899999987666667788899999999988887744
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.54 E-value=7.2e-15 Score=123.25 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=89.1
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
+..+|.+|||+ |||+|..+..|+...+. +++|++||+++.+++.|++++.....+++|+++|+.+. + +.++||+|+
T Consensus 24 ~~~~~~~ILDi-GcG~G~~~~~la~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~-~~~~fD~v~ 99 (281)
T d2gh1a1 24 KITKPVHIVDY-GCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-E-LNDKYDIAI 99 (281)
T ss_dssp CCCSCCEEEEE-TCTTTHHHHHHTTTSCT-TCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-C-CSSCEEEEE
T ss_pred ccCCcCEEEEe-cCcCCHHHHHHHHhCCC-CCEEEEEecchhHhhhhhcccccccccccccccccccc-c-ccCCceEEE
Confidence 45688999999 99999999999987754 78999999999999999999984345799999999875 3 357899999
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
...-. ++....++.+.+.|+|||.+++.+
T Consensus 100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 87643 367889999999999999888766
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=2.5e-14 Score=115.55 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=93.3
Q ss_pred HHHHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHH
Q 041509 28 EAEFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQS 103 (211)
Q Consensus 28 ~~~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e 103 (211)
.-+.+..+++ ..+..+|||+ |||+|..+..|++.+..++.+|++||++++|++.|+++++ +...++++..+|..+
T Consensus 25 ~~~~i~~~~~~~~~~~~~vLDl-GCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~ 103 (225)
T d1im8a_ 25 IITAIGMLAERFVTADSNVYDL-GCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH 103 (225)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEE-SCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEe-ccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc
Confidence 3344444433 2456789999 9999999999998776567899999999999999999987 556789999999876
Q ss_pred HhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 104 LLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
. + .+.+|+|++.. +.++....++.+.+.|+|||.+++.|-...
T Consensus 104 ~-~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 104 V-E--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp C-C--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred c-c--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 5 2 46889888753 234667899999999999998888765443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=1.7e-14 Score=123.45 Aligned_cols=109 Identities=16% Similarity=0.043 Sum_probs=90.1
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---c
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---F 109 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~ 109 (211)
.+.+..++++|||+ +||+|..++++|.. +.+|+++|.++.+++.|++|++ ...++++++++|+.+.+..+ .
T Consensus 139 ~~~~~~~g~rVLDl-~~gtG~~s~~~a~g----~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~ 213 (318)
T d1wxxa2 139 LYMERFRGERALDV-FSYAGGFALHLALG----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEG 213 (318)
T ss_dssp HHGGGCCEEEEEEE-TCTTTHHHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTT
T ss_pred HHHHHhCCCeeecc-CCCCcHHHHHHHhc----CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhh
Confidence 34555678999999 79999999988754 5799999999999999999998 33367999999999886544 5
Q ss_pred CCccEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 110 READFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 110 ~~fD~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
++||+|++|.+. ..|.+.++.+.++|+|||.++.+.|.
T Consensus 214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 799999999752 24677888899999999988887764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.52 E-value=1.9e-14 Score=111.98 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=93.8
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC--C-----------
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL--D----------- 90 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~--~----------- 90 (211)
+.|..-+++..| ...++.+|||+ |||+|+.+++||+. +.+||+||++++|++.|++..+. .
T Consensus 5 ~~~~~~~~~~~l-~~~~~~rvLd~-GCG~G~~a~~la~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~ 78 (201)
T d1pjza_ 5 VNKDLQQYWSSL-NVVPGARVLVP-LCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 78 (201)
T ss_dssp STHHHHHHHHHH-CCCTTCEEEET-TTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE
T ss_pred HHHHHHHHHHHc-CCCCCCEEEEe-cCcCCHHHHHHHHc----CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcc
Confidence 445566666665 56678899999 99999999999975 78999999999999999998751 1
Q ss_pred CCcEEEEEcchHHHhhhccCCccEEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 91 ASHVEFVIGDAQSLLLSHFREADFVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
...++++.+|..+..+.....||+|+.-... .++..+++.+.+.|+|||.+++......
T Consensus 79 ~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 79 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 2456899999987655446789999865432 2467899999999999988777655443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=2.1e-14 Score=116.79 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=81.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++++|||+ |||+|..++.|++. +.+|++||++++|++.|++++.....+++++++|+.++- +.++||+|++
T Consensus 39 ~~~~~~iLDi-GcGtG~~~~~l~~~----~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~--~~~~fD~I~~ 111 (251)
T d1wzna1 39 KREVRRVLDL-ACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA--FKNEFDAVTM 111 (251)
T ss_dssp SSCCCEEEEE-TCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC--CCSCEEEEEE
T ss_pred CCCCCEEEEe-CCCCCccchhhccc----ceEEEEEeeccccccccccccccccccchheehhhhhcc--cccccchHhh
Confidence 3456789999 99999999999874 568999999999999999998722337999999998863 3579999997
Q ss_pred cCCc------CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNL------ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~------~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
-... ++....++.+.+.|+|||.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5321 34568899999999998877663
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=8.9e-14 Score=110.22 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l 108 (211)
+++.. +...++.+|||| |||+|..+.+|++. +.+|++||+++++++.|+++.+ ...+++++..+|..+..+
T Consensus 21 ~~~~~-~~~~~~grvLDi-GcG~G~~~~~la~~----g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 92 (198)
T d2i6ga1 21 DVLAA-AKVVAPGRTLDL-GCGNGRNSLYLAAN----GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-- 92 (198)
T ss_dssp HHHHH-HTTSCSCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC--
T ss_pred HHHHH-cccCCCCcEEEE-CCCCCHHHHHHHHH----hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc--
Confidence 34443 455677899999 99999999999874 5799999999999999999887 334679999999987643
Q ss_pred cCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++||+|+... +..+..++++.+.+.|+|||.+++...
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 68999999765 334567899999999999888777543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=5.4e-14 Score=112.03 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=82.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..+|||| |||+|..+..+++. +.+|+++|++++|++.|++++.....++.++++|+.++ +..+++||+|+.-
T Consensus 36 ~~~~~ILDi-GcG~G~~~~~la~~----~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l-~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 36 KKRGKVLDL-ACGVGGFSFLLEDY----GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFI 109 (226)
T ss_dssp CSCCEEEEE-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEE
T ss_pred CCCCEEEEE-CCCcchhhhhHhhh----hcccccccccccchhhhhhhhccccccccccccccccc-cccCcCceEEEEe
Confidence 455789999 99999999999863 67999999999999999999873345688999999885 4336899999976
Q ss_pred CCcC-----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 119 CNLE-----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 119 ~~~~-----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.... +...+++.+.++|+|||.+++...
T Consensus 110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 5332 456789999999999998877553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.48 E-value=4.1e-14 Score=115.47 Aligned_cols=111 Identities=13% Similarity=0.022 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
+....++..++.. .++++|||+ |||+|..+..|++. +.+|++||.+++|++.|++++.....+++++++|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDi-GCG~G~~~~~l~~~----g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~ 95 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDL-ACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEE-TCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEE-eCcCCHHHHHHHHh----CCccEeeccchhhhhhccccccccCccceeeccchhh
Confidence 4456666655543 456899999 99999999999864 5689999999999999999887223479999999987
Q ss_pred HhhhccCCccEEEEcCC-------cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCN-------LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~-------~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.- +.++||+|++-.. ..+....++.+.+.|+|||.+++
T Consensus 96 ~~--~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 96 LN--INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CC--CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hc--ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 63 3679999986322 12456789999999999887665
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.5e-14 Score=116.73 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=87.7
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
..+..+|||+ |||+|..+..++... ..+|++||++++|++.||+++. ....+++|+++|+.+... ..++||+|+
T Consensus 58 ~~~~~~vLDi-GcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~-~~~~fD~I~ 132 (222)
T d2ex4a1 58 KTGTSCALDC-GAGIGRITKRLLLPL---FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP-EPDSYDVIW 132 (222)
T ss_dssp CCCCSEEEEE-TCTTTHHHHHTTTTT---CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC-CSSCEEEEE
T ss_pred CCCCCEEEEe-ccCCCHhhHHHHHhc---CCEEEEeecCHHHhhcccccccccccccccccccccccccc-ccccccccc
Confidence 3556789999 999999888875432 4689999999999999999987 324678999999998643 368999999
Q ss_pred EcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+..... +..+.++.+.+.|+|||.+++.++....+
T Consensus 133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~ 172 (222)
T d2ex4a1 133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 172 (222)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS
T ss_pred cccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccc
Confidence 875433 23578999999999999999988766544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.47 E-value=1.3e-13 Score=117.91 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=89.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc---cCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH---FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l---~~~ 111 (211)
..++++|||+ .||+|..+++++.+- ..+|++||.++.+++.|++|++ ++ .++++++.+|+.+.++.+ .++
T Consensus 142 ~~~g~~VLdl-f~~~G~~sl~aa~~g---a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 142 SAAGKTVLNL-FSYTAAFSVAAAMGG---AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TTBTCEEEEE-TCTTTHHHHHHHHTT---BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hhCCCceeec-CCCCcHHHHHHHhCC---CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 4567899999 599999998877542 4689999999999999999998 55 368999999999988654 468
Q ss_pred ccEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 112 ADFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 112 fD~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
||+|++|++. .+|.+.++.+.++|+|||.++++.|.
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999999763 25788999999999999988887774
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=2.7e-13 Score=113.97 Aligned_cols=102 Identities=8% Similarity=-0.019 Sum_probs=86.5
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
+...++++|||| |||.|..+.++++.. +.+|++|+++++.++.|++.++ ++..++++...|..+. .++||
T Consensus 48 l~l~~g~~VLDi-GCG~G~~a~~~a~~~---g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~~fD 119 (280)
T d2fk8a1 48 LDLKPGMTLLDI-GCGWGTTMRRAVERF---DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPVD 119 (280)
T ss_dssp SCCCTTCEEEEE-SCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCCS
T ss_pred cCCCCCCEEEEe-cCCchHHHHHHHHhC---ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----ccchh
Confidence 356678899999 999999999988764 5799999999999999999987 6778899999987643 57999
Q ss_pred EEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.|+.-.. ..+|..+++.+.++|+|||.+++.+
T Consensus 120 ~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 120 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 9986542 3467899999999999999988754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.45 E-value=2.1e-13 Score=107.75 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=88.0
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~ 107 (211)
.+...+....+..+|||+ +||+|..++.++..- ..+|+.||.|+++++.+++|++ +..++++++++|+.+.+..
T Consensus 31 alFn~l~~~~~~~~vLDl-faGsG~~g~ea~srG---a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~ 106 (182)
T d2fhpa1 31 SIFNMIGPYFDGGMALDL-YSGSGGLAIEAVSRG---MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 106 (182)
T ss_dssp HHHHHHCSCCSSCEEEET-TCTTCHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc-ccccccccceeeecc---hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhh
Confidence 344555445678999999 699999999766542 4589999999999999999998 6677899999999998875
Q ss_pred c---cCCccEEEEcCC--cCcHHHHHHHHHh--cCCCCcEEEE
Q 041509 108 H---FREADFVLIDCN--LENHEGVLRAVQA--GNKPNGAVVV 143 (211)
Q Consensus 108 l---~~~fD~VfiD~~--~~~y~~~l~~~~~--~L~pgG~viv 143 (211)
+ ..+||+||+|++ ...|.+.++.+.. +|+|+|.+++
T Consensus 107 ~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 107 FYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp HHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence 4 458999999996 4578888888865 4888665444
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=2.8e-13 Score=108.97 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=85.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
+...|||| |||+|.+++.+|+..+ +..+++||+++.++..|.++.+ ...++|.++.+|+.+++..+ .+.+|.|++
T Consensus 29 ~~PlvLeI-GcG~G~~~~~lA~~~p--~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 29 DNPIHIEV-GTGKGQFISGMAKQNP--DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp CCCEEEEE-CCTTSHHHHHHHHHCT--TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEE-EecCcHHHHHHHHhCC--CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccc
Confidence 34579999 9999999999999864 6899999999999999999987 33478999999998876543 678999988
Q ss_pred cCCcCc-----------HHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DCNLEN-----------HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~~~~~-----------y~~~l~~~~~~L~pgG~viv~dn 146 (211)
-.+.+. ..+.++.+.+.|+|||.+.+..|
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD 145 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 145 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 653221 25799999999999999887643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.45 E-value=3.5e-13 Score=114.79 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=86.1
Q ss_pred HHHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHh
Q 041509 30 EFISALA-AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLL 105 (211)
Q Consensus 30 ~lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l 105 (211)
+++..++ ...++++|||+ +||+|..+++++.+ +++|++||.++.+++.|++|++ ++. .+++|+++|+.+.+
T Consensus 121 ~~~~~~~~~~~~~~rVLdl-f~~tG~~sl~aa~~----GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l 195 (309)
T d2igta1 121 EWLKNAVETADRPLKVLNL-FGYTGVASLVAAAA----GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 195 (309)
T ss_dssp HHHHHHHHHSSSCCEEEEE-TCTTCHHHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred HHHHHHHhhccCCCeEEEe-cCCCcHHHHHHHhC----CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH
Confidence 3444443 34568899999 69999999988754 5699999999999999999998 554 47999999999988
Q ss_pred hhc---cCCccEEEEcCCc------------C-cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 106 LSH---FREADFVLIDCNL------------E-NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 106 ~~l---~~~fD~VfiD~~~------------~-~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... .++||+|++|.+. . .+...++.+..+|+|||.++++.
T Consensus 196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 196 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 654 5799999999752 1 23445567778899988655443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.6e-13 Score=109.12 Aligned_cols=119 Identities=7% Similarity=-0.074 Sum_probs=96.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--------------
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------------- 88 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------------- 88 (211)
...|..-+++..+....++.+|||+ |||.|..+++||+. +.+||+||.++++++.|++...
T Consensus 28 ~~~~~l~~~~~~~l~~~~~~rvLd~-GCG~G~~a~~LA~~----G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~ 102 (229)
T d2bzga1 28 QGHQLLKKHLDTFLKGKSGLRVFFP-LCGKAVEMKWFADR----GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102 (229)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEET-TCTTCTHHHHHHHT----TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEe-CCCCcHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence 4556666777777777888899999 99999999999973 6799999999999999998753
Q ss_pred ----CCCCcEEEEEcchHHHhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 89 ----LDASHVEFVIGDAQSLLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 89 ----~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
....+++++++|..+..+...+.||+|+.-+ .......+++.+.++|+|||.+++...
T Consensus 103 ~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 1235799999999988665578999998654 234678899999999999998766553
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.44 E-value=1.6e-13 Score=110.74 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=85.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh--hccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL--SHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~--~l~~~fD~V 115 (211)
..++.+|||+ |||+|+++..||...+ .++|++||++|++++.|+++.+. .+++.++.+|+..... .....+|+|
T Consensus 54 lkpg~~VLDl-GcG~G~~~~~la~~v~--~g~V~gvDis~~~i~~a~~~a~~-~~ni~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 54 LRGDERVLYL-GAASGTTVSHLADIVD--EGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCSSCEEEEE-TCTTSHHHHHHHHHTT--TSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCEEEEe-CCcCCHHHHHHHHhcc--CCeEEEEeCCHHHHHHHHHHhhc-cCCceEEEeeccCccccccccceEEEE
Confidence 4677899999 9999999999999874 57999999999999999998873 2589999999876422 124578888
Q ss_pred EEcCCc-CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNL-ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~-~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|.|... .+....++.+.+.|+|||.+++++
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 888654 356778999999999999988876
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=6.4e-13 Score=112.29 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=89.6
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++...+...++.+|||| |||.|..++++|+.. +.+|++|+++++.++.|++..+ ++.+++++...|..+ .
T Consensus 52 ~~~~~l~l~~G~~VLDi-GCG~G~~~~~~a~~~---g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~----~ 123 (291)
T d1kpia_ 52 LALDKLNLEPGMTLLDI-GCGWGSTMRHAVAEY---DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE----F 123 (291)
T ss_dssp HHHHTTCCCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG----C
T ss_pred HHHHhcCCCCCCEEEEe-cCcchHHHHHHHHhc---CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc----c
Confidence 44444567789999999 999999999999875 5799999999999999999987 778899999999753 3
Q ss_pred cCCccEEEEcCC------------cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCN------------LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~------------~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++||.|+.-.. .++|..+++.+.++|+|||.+++.+
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 689999986432 1468999999999999999888754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.44 E-value=2e-13 Score=112.02 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=87.3
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc--CCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAH--QTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~--~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
..|....++..++...+|++|||| |++.|+|+++++..+. ...++|++||+++.....+. ...++|+++.||+
T Consensus 64 k~p~d~~~~~eli~~~KPk~ILEI-Gv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----~~~~~I~~i~gDs 138 (232)
T d2bm8a1 64 KDPDTQAVYHDMLWELRPRTIVEL-GVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDC 138 (232)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEE-CCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCS
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEE-CCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----ccccceeeeeccc
Confidence 447888888999998999999999 9999999999987653 23799999999986543222 2357899999997
Q ss_pred H--HHhhhc-cCCccEEEEcCCcCcHHHHHHH-HHhcCCCCcEEEEEecC
Q 041509 102 Q--SLLLSH-FREADFVLIDCNLENHEGVLRA-VQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 102 ~--e~l~~l-~~~fD~VfiD~~~~~y~~~l~~-~~~~L~pgG~viv~dn~ 147 (211)
. +.+..+ ...+|+||+|+++.......+. ..++|+|||.+++ ++.
T Consensus 139 ~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIv-eD~ 187 (232)
T d2bm8a1 139 SDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFII-EDM 187 (232)
T ss_dssp SCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEE-CSC
T ss_pred ccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEE-EcC
Confidence 5 344444 4479999999997754333322 4578999776665 554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=9e-13 Score=111.05 Aligned_cols=107 Identities=7% Similarity=-0.006 Sum_probs=90.0
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++...+...++.+|||| |||.|..++++|+.- +.+|++|.++++.++.|++..+ ++.+++++..+|..+.
T Consensus 53 ~~~~~l~l~~G~~VLDi-GCG~G~~a~~~a~~~---g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---- 124 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDV-GCGWGATMMRAVEKY---DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---- 124 (285)
T ss_dssp HHHTTTTCCTTCEEEEE-TCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----
T ss_pred HHHHHcCCCCCCEEEEe-cCcchHHHHHHHhcC---CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----
Confidence 34444567789999999 999999999999874 6899999999999999999876 7889999999998654
Q ss_pred cCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++||.|+.=. ...+|..+++.+.++|+|||.+++.+
T Consensus 125 ~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 125 DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 57999887543 23478999999999999999988755
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.41 E-value=2.5e-13 Score=111.46 Aligned_cols=101 Identities=11% Similarity=0.024 Sum_probs=80.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.++|||+ |||+|..+..++.. ..++|++||+++++++.|++... +...++.++++|+........++||+|+
T Consensus 23 ~~~~~VLDl-GCG~G~~~~~~~~~---~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~ 98 (252)
T d1ri5a_ 23 KRGDSVLDL-GCGKGGDLLKYERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS 98 (252)
T ss_dssp CTTCEEEEE-TCTTTTTHHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred CCcCEEEEe-cccCcHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEE
Confidence 467899999 99999888888765 24689999999999999999887 4456899999999654333367899999
Q ss_pred EcCCcC-------cHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDCNLE-------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~~~~-------~y~~~l~~~~~~L~pgG~viv 143 (211)
+-.... +...+++.+.+.|+|||.+++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~ 132 (252)
T d1ri5a_ 99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 132 (252)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence 865432 235788999999999887765
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=6.2e-13 Score=108.64 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=87.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--hhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--LSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~fD~V 115 (211)
..++.+|||+ |||+|+.|.+||....+ +|+|+++|++|++++.|+++.+. ..++..+.+|+.... +...+.+|+|
T Consensus 71 i~pG~~VLDl-GaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~-~~~~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 71 IKPGKSVLYL-GIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEE-RRNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEE-TTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSS-CTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred cCCCCEEEEe-ccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHh-cCCceEEEEECCCcccccccccceEEE
Confidence 4678899999 99999999999999865 89999999999999999998873 356888888875432 2225689999
Q ss_pred EEcCCcC-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|.|.... +....++.+.+.|+|||.++++..
T Consensus 148 ~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 148 FEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 9997655 557789999999999998887653
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=2.3e-13 Score=113.28 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=84.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++++|||+ |||+|+.++.+|... .++|+++|+||++++.|++|++ ++.++|++++||+.++++ .+.||.|
T Consensus 105 ~~~g~~VlD~-~aG~G~~~l~~a~~~---~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~I 178 (260)
T d2frna1 105 AKPDELVVDM-FAGIGHLSLPIAVYG---KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRI 178 (260)
T ss_dssp CCTTCEEEET-TCTTTTTHHHHHHHT---CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEE
T ss_pred cCCccEEEEC-cceEcHHHHHHHHhC---CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--CCCCCEE
Confidence 3578899999 899999999988752 4699999999999999999998 678899999999998765 5789999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++.... -.++++.+.+.|+|||.+.+.+
T Consensus 179 i~~~p~~-~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 179 LMGYVVR-THEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp EECCCSS-GGGGHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCc-hHHHHHHHHhhcCCCCEEEEEe
Confidence 9987653 3456777888899977665533
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.40 E-value=4.7e-13 Score=108.05 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=83.1
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
+..+....++++|||| |||+|..+..++.. +.+|++||+++++++.|+++.. ++++++++|+.+.. ++++
T Consensus 12 ~~~~~~~~~~~~VLDi-GcG~G~~~~~l~~~----g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~--~~~~ 81 (225)
T d2p7ia1 12 VRAFTPFFRPGNLLEL-GSFKGDFTSRLQEH----FNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQ--LPRR 81 (225)
T ss_dssp HHHHGGGCCSSCEEEE-SCTTSHHHHHHTTT----CSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCC--CSSC
T ss_pred HHHhhhhCCCCcEEEE-eCCCcHHHHHHHHc----CCeEEEEeCcHHHhhhhhcccc---cccccccccccccc--cccc
Confidence 4555666788999999 99999998888753 5689999999999999998754 46999999998763 3689
Q ss_pred ccEEEEcCCc---CcHHHHHHHHH-hcCCCCcEEEEE
Q 041509 112 ADFVLIDCNL---ENHEGVLRAVQ-AGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~---~~y~~~l~~~~-~~L~pgG~viv~ 144 (211)
||+|++-.-. ++....++.+. ++|+|||.+++.
T Consensus 82 fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 82 YDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence 9999986533 35577888887 689998887764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.39 E-value=5e-13 Score=110.48 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=86.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..+..+|||+ |||+|..|..|+... ..+|++||.++++++.||+++.+ ..+++++++|+.+.-. ..++||+|++
T Consensus 91 ~~~~~~vLD~-GcG~G~~t~~ll~~~---~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~d~~~~~~-~~~~fD~I~~ 164 (254)
T d1xtpa_ 91 GHGTSRALDC-GAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAG-MPVGKFILASMETATL-PPNTYDLIVI 164 (254)
T ss_dssp TCCCSEEEEE-TCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTT-SSEEEEEESCGGGCCC-CSSCEEEEEE
T ss_pred CCCCCeEEEe-cccCChhhHHHHhhc---CceEEEEcCCHHHHHhhhccccc-cccceeEEcccccccc-CCCccceEEe
Confidence 3467789999 999999999887643 35899999999999999998873 3569999999987643 2679999998
Q ss_pred cCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 118 DCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 D~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
-.-.. +..++++.+.+.|+|||.+++.+|.....
T Consensus 165 ~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~ 203 (254)
T d1xtpa_ 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD 203 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C
T ss_pred eccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCC
Confidence 75432 34578999999999999999988866543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=5e-13 Score=107.58 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|..+.+|+.. +.+|++||+++++++.|+++... .++.+|+.++ +..+++||+|+.-
T Consensus 41 ~~~~~vLDi-GcG~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~-----~~~~~~~~~l-~~~~~~fD~ii~~ 109 (246)
T d2avna1 41 KNPCRVLDL-GGGTGKWSLFLQER----GFEVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDL-PFPSGAFEAVLAL 109 (246)
T ss_dssp CSCCEEEEE-TCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHHTCS-----CEEECCTTSC-CSCTTCEEEEEEC
T ss_pred CCCCEEEEE-CCCCchhccccccc----ceEEEEeeccccccccccccccc-----cccccccccc-ccccccccceeee
Confidence 356799999 99999999999853 67999999999999999987431 2567898875 4336899999864
Q ss_pred CC----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CN----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.. ..+..+.++.+.++|+|||.+++..
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 43 3467889999999999988776643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.38 E-value=7.4e-13 Score=108.98 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=86.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+.++|||| |||+|..++.+++..+ +.+++.+|. |++++.|++++. ++.++|+++.+|..+.. ..+||+
T Consensus 77 d~~~~~~VLDv-GcG~G~~~~~la~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---~~~~D~ 149 (253)
T d1tw3a2 77 DWTNVRHVLDV-GGGKGGFAAAIARRAP--HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADA 149 (253)
T ss_dssp CCTTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEE
T ss_pred CCccCCEEEEe-CCCCCHHHHHHHHhcc--eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---ccchhh
Confidence 34567899999 9999999999999874 689999998 779999999987 67889999999987643 467999
Q ss_pred EEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 115 VLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|++-.-.. +....++.+.+.|+|||.++|.|...
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99865432 23567999999999999999987544
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=1.2e-12 Score=106.95 Aligned_cols=107 Identities=15% Similarity=0.046 Sum_probs=84.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccC--CccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFR--EADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~--~fD~V 115 (211)
..++.+|||+ |||+|+++..+|...+ +|+|++||++|.+++.|++.... ..++..+.+|+.......+. .+|++
T Consensus 72 ikpG~~VLDl-GcGsG~~~~~la~~~~--~g~V~aVDiS~~~i~~a~~~a~~-~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 72 IKRDSKILYL-GASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAE-RENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCTTCEEEEE-SCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTT-CTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEe-CEEcCHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhh-hcccceEEEeeccCcccccccceeEEe
Confidence 4667899999 9999999999999763 68999999999999999988763 35788899998776543333 44556
Q ss_pred EEcCCc-CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 116 LIDCNL-ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 116 fiD~~~-~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|.|... .+....++.+.+.|+|||.+++++..-
T Consensus 148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~ 181 (230)
T d1g8sa_ 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR 181 (230)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred eccccchHHHHHHHHHHHHhcccCceEEEEeecc
Confidence 655443 356778999999999999888876543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.6e-12 Score=102.61 Aligned_cols=109 Identities=16% Similarity=0.040 Sum_probs=86.1
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+-......+|||+ +||+|..++.++.. ...+|+.||.|+++++.+++|++ ...++++++.+|+.+.+....
T Consensus 34 lfn~l~~~~~~~~vLDl-faGsG~~giealsr---Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~ 109 (183)
T d2fpoa1 34 LFNWLAPVIVDAQCLDC-FAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKG 109 (183)
T ss_dssp HHHHHHHHHTTCEEEET-TCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCC
T ss_pred HHhhhhcccchhhhhhh-hccccceeeeEEec---CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccc
Confidence 33344344567899999 79999999876543 24689999999999999999998 445779999999999987667
Q ss_pred CCccEEEEcCCc--CcHHHHHHHHHh--cCCCCcEEEE
Q 041509 110 READFVLIDCNL--ENHEGVLRAVQA--GNKPNGAVVV 143 (211)
Q Consensus 110 ~~fD~VfiD~~~--~~y~~~l~~~~~--~L~pgG~viv 143 (211)
.+||+||+|++- ..+.+.++.+.+ .|+++|.+++
T Consensus 110 ~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 110 TPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp CCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEE
Confidence 899999999863 367888888876 4888665554
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=2.1e-12 Score=100.84 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=71.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH-hhhccCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL-LLSHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~-l~~l~~~fD~V 115 (211)
.++.+|||+ |||+|..++.++.. ++++++||.|+++++.|++|++ +..+++....+|.... .....++||+|
T Consensus 40 ~~g~~vLDl-~~G~G~~~i~a~~~----ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 40 PRRGRFLDP-FAGSGAVGLEAASE----GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TTCCEEEEE-TCSSCHHHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEe-ccccchhhhhhhhc----cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence 567899999 89999988876543 6789999999999999999998 6666665555544221 12225789999
Q ss_pred EEcCCcC-cHHHHHHHHH--hcCCCCcEEEEEe
Q 041509 116 LIDCNLE-NHEGVLRAVQ--AGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~-~y~~~l~~~~--~~L~pgG~viv~d 145 (211)
|+|++-. ++.+.+..+. .+|+|||.+++-+
T Consensus 115 f~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred EEccccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 9998632 3333444443 3688877666544
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=4.1e-12 Score=106.43 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 24 KEPNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..|++-.++...... .++.+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ +. ++|+|+.+
T Consensus 90 PRpeTE~lv~~~l~~~~~~~~~vlDl-GtGSG~I~i~la~~~p--~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~ 165 (274)
T d2b3ta1 90 PRPDTECLVEQALARLPEQPCRILDL-GTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQS 165 (274)
T ss_dssp CCTTHHHHHHHHHHHSCSSCCEEEEE-TCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECC
T ss_pred cccchhhhhhhHhhhhcccccceeee-ehhhhHHHHHHHhhCC--cceeeeccchhHHHhHHHHHHHHhCc-ccceeeec
Confidence 346665555444333 345679999 8999999999998874 6899999999999999999998 44 67999999
Q ss_pred chHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
|..+.++ .++||+|+.+.+- ..|.++++.+.+.|+|+|.+++
T Consensus 166 d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 166 DWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp STTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 9987655 4699999987431 1246688888889999887766
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.32 E-value=8.2e-12 Score=100.23 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=84.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
....|||| |||+|.+++.+|+..| +..+++||+++.++..|.+++. ...++|+++.+|+.+++..+ ..++|.|++
T Consensus 31 ~~plvLdI-GcG~G~~~~~lA~~~p--~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i 107 (204)
T d1yzha1 31 DNPIHVEV-GSGKGAFVSGMAKQNP--DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL 107 (204)
T ss_dssp CCCEEEEE-SCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEE-eccCCHHHHHHHHHCC--CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc
Confidence 34579999 9999999999999874 6899999999999999988887 33468999999998876433 578999988
Q ss_pred cCCc---C--c------HHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DCNL---E--N------HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~~~---~--~------y~~~l~~~~~~L~pgG~viv~dn 146 (211)
-.+. . + ..++++.+.+.|+|||.+.+..|
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 5431 1 1 27899999999999999877653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=4.9e-12 Score=105.72 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC---CcEEEEEcc
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA---SHVEFVIGD 100 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~---~~V~~~~gd 100 (211)
....+++..+....+.++|||+ |||+|..++.||+. +.+|++||++++|++.|+++.. +.. ....+...+
T Consensus 42 ~~~~~~l~~~l~~~~~~~vLD~-GcG~G~~~~~la~~----g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGCHRVLDV-ACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCCEEEES-SCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhhcCCCEEEEe-cCCCcHHHHHHHHc----CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence 3445677777777788999999 99999999999864 5699999999999999999876 221 234555666
Q ss_pred hHHHhhh--ccCCccEEEEcCC-----------cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 101 AQSLLLS--HFREADFVLIDCN-----------LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 101 a~e~l~~--l~~~fD~VfiD~~-----------~~~y~~~l~~~~~~L~pgG~viv 143 (211)
....-.. ..++||.|++-.+ ..+....++.+.+.|+|||.+++
T Consensus 117 ~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 117 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp GGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 6543222 2578999987432 12456799999999999887766
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.7e-12 Score=107.86 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=78.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++.+|||+ |||+|+.+..|+...+ +.++++||+++++++.|+++. .+++++++|+.+. +..+++||+|+.-
T Consensus 83 ~~~~~iLDi-GcG~G~~~~~l~~~~~--~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l-~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 83 DKATAVLDI-GCGEGYYTHAFADALP--EITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL-PFSDTSMDAIIRI 154 (268)
T ss_dssp TTCCEEEEE-TCTTSTTHHHHHHTCT--TSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC-SBCTTCEEEEEEE
T ss_pred CCCCEEEEe-CCCCcHHHHHHHHHCC--CCEEEEecchHhhhhhhhccc----ccccceeeehhhc-cCCCCCEEEEeec
Confidence 467899999 9999999999998763 689999999999999998863 4689999999875 4337899999976
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..... ++++.+.|+|||.+++..
T Consensus 155 ~~~~~----~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 155 YAPCK----AEELARVVKPGGWVITAT 177 (268)
T ss_dssp SCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred CCHHH----HHHHHHHhCCCcEEEEEe
Confidence 55544 456788899999888765
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=4.4e-12 Score=108.06 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=85.7
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C--CCCcEEEEEcchHHHhhhcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L--DASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~--~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+|++||.| |.|.|.++.++++.. +..+|+.||+||+.++.|++++. + ...+++++.+|+.+.+.+..
T Consensus 73 ~~~~~pk~VLii-G~G~G~~~~~ll~~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 149 (312)
T d1uira_ 73 LTHPEPKRVLIV-GGGEGATLREVLKHP--TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE 149 (312)
T ss_dssp HHSSCCCEEEEE-ECTTSHHHHHHTTST--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC
T ss_pred hhCCCcceEEEe-CCCchHHHHHHHhcC--CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcC
Confidence 345678999999 999998877776532 36799999999999999999984 1 25789999999999998777
Q ss_pred CCccEEEEcCCcC---------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 110 READFVLIDCNLE---------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 110 ~~fD~VfiD~~~~---------~y-~~~l~~~~~~L~pgG~viv 143 (211)
++||+|++|.... .| .++++.+.+.|+|||.+++
T Consensus 150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 8999999997321 22 7899999999999776554
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.27 E-value=6.1e-12 Score=103.93 Aligned_cols=104 Identities=20% Similarity=0.113 Sum_probs=86.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.++|||| |||+|..+..++++.| +.+++.+|+ |++++.|+++++ +..++++++.+|..+-+ ...||+|+
T Consensus 80 ~~~~~vlDv-G~G~G~~~~~l~~~~P--~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---p~~~D~v~ 152 (256)
T d1qzza2 80 SAVRHVLDV-GGGNGGMLAAIALRAP--HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---PVTADVVL 152 (256)
T ss_dssp TTCCEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred ccCCEEEEE-CCCCCHHHHHHHHhhc--CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---cccchhhh
Confidence 456889999 9999999999999874 689999997 889999999987 77889999999987643 45799999
Q ss_pred EcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+-.-. ++-...++.+.+.|+|||.++|.|.+..
T Consensus 153 ~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~ 190 (256)
T d1qzza2 153 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV 190 (256)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-
T ss_pred ccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccC
Confidence 76432 2345779999999999999999887654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=4.3e-12 Score=100.40 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=75.6
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCcc
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
.+....+..+|||| |||+|..+..++ ++++||+++++++.|+++ +++++++|+.+. +..+++||
T Consensus 30 ~~~~~~~~~~vLDi-GcG~G~~~~~~~--------~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l-~~~~~~fD 93 (208)
T d1vlma_ 30 AVKCLLPEGRGVEI-GVGTGRFAVPLK--------IKIGVEPSERMAEIARKR------GVFVLKGTAENL-PLKDESFD 93 (208)
T ss_dssp HHHHHCCSSCEEEE-TCTTSTTHHHHT--------CCEEEESCHHHHHHHHHT------TCEEEECBTTBC-CSCTTCEE
T ss_pred HHHhhCCCCeEEEE-CCCCcccccccc--------eEEEEeCChhhccccccc------cccccccccccc-cccccccc
Confidence 33444555689999 999998766552 468999999999999874 589999999876 32368999
Q ss_pred EEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+.-... ++....++++.+.|+|||.+++.+
T Consensus 94 ~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 94 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccccchhhhhhcCCCCceEEEEe
Confidence 99987533 357889999999999998887755
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=1.3e-11 Score=105.20 Aligned_cols=100 Identities=11% Similarity=0.108 Sum_probs=78.7
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+.++|||| |||+|..++.+|++. ..+|+++|.++ +++.|+++.+ +..++|+++++|+.+.-. ..++||+
T Consensus 35 ~~~~~~~VLDl-GcGtG~ls~~aa~~G---a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~-~~~~~D~ 108 (328)
T d1g6q1_ 35 DLFKDKIVLDV-GCGTGILSMFAAKHG---AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL-PFPKVDI 108 (328)
T ss_dssp HHHTTCEEEEE-TCTTSHHHHHHHHTC---CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-SSSCEEE
T ss_pred ccCCcCEEEEe-CCCCCHHHHHHHHhC---CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC-cccceeE
Confidence 34578999999 999999999888752 35999999996 6788888877 678899999999987632 2579999
Q ss_pred EEEcCC------cCcHHHHHHHHHhcCCCCcEEE
Q 041509 115 VLIDCN------LENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 115 VfiD~~------~~~y~~~l~~~~~~L~pgG~vi 142 (211)
|+...- .......+....++|+|||.++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 997532 2245677888888999977653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=6.5e-12 Score=106.59 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.++|||| |||+|..++++|++. ..+|++||.++. +..|+++.+ +..++|+++++|+.+.-. ..++||+|+
T Consensus 32 ~~~~~VLDi-GcG~G~ls~~aa~~G---a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~-~~~~~D~iv 105 (316)
T d1oria_ 32 FKDKVVLDV-GSGTGILCMFAAKAG---ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL-PVEKVDIII 105 (316)
T ss_dssp HTTCEEEEE-TCTTSHHHHHHHHTT---CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSSCEEEEE
T ss_pred CCcCEEEEE-ecCCcHHHHHHHHhC---CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc-ccceeEEEe
Confidence 467899999 999999999888752 358999999975 567777766 678899999999988632 257999998
Q ss_pred EcCC------cCcHHHHHHHHHhcCCCCcEEE
Q 041509 117 IDCN------LENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 117 iD~~------~~~y~~~l~~~~~~L~pgG~vi 142 (211)
.+.- ...+..+++.+.++|+|||.++
T Consensus 106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 7642 1256788899999999987654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=4.9e-11 Score=95.21 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=82.7
Q ss_pred CcCCChhHHHHHHHHHhh---CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 21 QKAKEPNEAEFISALAAG---NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~---~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
|..-++..+..+..++.. ..+++|||+ |||+|..++.++.. ...+|++||+|+++++.|++|++.+..+++++
T Consensus 24 qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDl-g~GtG~l~i~a~~~---g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~ 99 (201)
T d1wy7a1 24 QYRTPGNAASELLWLAYSLGDIEGKVVADL-GAGTGVLSYGALLL---GAKEVICVEVDKEAVDVLIENLGEFKGKFKVF 99 (201)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSSTTCEEEEE-TCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEE
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCEEEEC-cCcchHHHHHHHHc---CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEE
Confidence 345566666655444433 467899999 89999998877643 24699999999999999999998445678999
Q ss_pred EcchHHHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+|+.+. .++||+||+|.+-. .....+..... +++.++..++..
T Consensus 100 ~~d~~~~----~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~---~~~~v~~ih~~~ 148 (201)
T d1wy7a1 100 IGDVSEF----NSRVDIVIMNPPFGSQRKHADRPFLLKAFE---ISDVVYSIHLAK 148 (201)
T ss_dssp ESCGGGC----CCCCSEEEECCCCSSSSTTTTHHHHHHHHH---HCSEEEEEEECC
T ss_pred ECchhhh----CCcCcEEEEcCccccccccccHHHHHHHHh---hcccchhcccch
Confidence 9998653 67899999998642 11344544443 245555555433
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.5e-11 Score=103.79 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=75.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++|||| |||+|..++.+|++. ..+|+++|.++.+...++...+ +..++|+++++|+.+.-. ..++||+|
T Consensus 32 ~~~~~~~VLDi-GcG~G~lsl~aa~~G---a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~-~~~~~D~I 106 (311)
T d2fyta1 32 HIFKDKVVLDV-GCGTGILSMFAAKAG---AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL-PVEKVDVI 106 (311)
T ss_dssp GGTTTCEEEEE-TCTTSHHHHHHHHTT---CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC-SCSCEEEE
T ss_pred ccCCcCEEEEE-CCCCCHHHHHHHHcC---CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC-ccccceEE
Confidence 44577899999 999999999888753 3699999999987654443333 678899999999988632 25799999
Q ss_pred EEcCCc-----C-cHHHHHHHHHhcCCCCcEEE
Q 041509 116 LIDCNL-----E-NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 116 fiD~~~-----~-~y~~~l~~~~~~L~pgG~vi 142 (211)
+.+... + ....++....++|+|||.++
T Consensus 107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 975321 2 23556666677899977654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.21 E-value=3.5e-11 Score=100.71 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=83.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C----------CCCcEEEEEcchHHH
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L----------DASHVEFVIGDAQSL 104 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~----------~~~~V~~~~gda~e~ 104 (211)
....+|++||.| |.|.|..+..+.. .+..+|+.||+||+.++.|++.+. . ...+++++++|+.+.
T Consensus 68 ~~~~~p~~vLii-G~G~G~~~~~~l~---~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~ 143 (276)
T d1mjfa_ 68 LAHPKPKRVLVI-GGGDGGTVREVLQ---HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF 143 (276)
T ss_dssp HHSSCCCEEEEE-ECTTSHHHHHHTT---SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred hcCCCCceEEEe-cCCchHHHHHHHH---hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH
Confidence 445689999999 9999987665543 235699999999999999999885 1 247899999999999
Q ss_pred hhhccCCccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 105 LLSHFREADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
+.+ .++||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 144 l~~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 144 IKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp HHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred Hhc-cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence 976 68999999997543 12 6899999999999776554
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=6.1e-11 Score=101.25 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=84.8
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-CCcEEEEEcchHH
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-ASHVEFVIGDAQS 103 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~~~V~~~~gda~e 103 (211)
..+...+.++|||+ |||+|..++.+|...+ ..++++||+++++++.|+++.+ +. ..+|+|++||+.+
T Consensus 145 ~~~~l~~~~~vlD~-GcG~G~~~~~~a~~~~--~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~ 221 (328)
T d1nw3a_ 145 DEIKMTDDDLFVDL-GSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221 (328)
T ss_dssp HHSCCCTTCEEEEE-TCTTSHHHHHHHHHCC--CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred HHcCCCCCCEEEEc-CCCCCHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence 44456778899999 9999999999987653 5799999999999999988754 22 4679999999976
Q ss_pred Hhhh-ccCCccEEEEcCCc--CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 104 LLLS-HFREADFVLIDCNL--ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 104 ~l~~-l~~~fD~VfiD~~~--~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.--. .....|+||+..-. ++....+.++.+.|+|||.+++.....
T Consensus 222 ~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~~ 269 (328)
T d1nw3a_ 222 EEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA 269 (328)
T ss_dssp HHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecccC
Confidence 5211 01236899986432 356788999999999998887655433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=3e-11 Score=102.11 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=83.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C-CCCcEEEEEcchHHHhhhccCC
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L-DASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~-~~~~V~~~~gda~e~l~~l~~~ 111 (211)
...+|++||-| |.|.|..+-++++.. +..+|+.||+||+.++.|++++. . ...+++++.+|+.+.+.+..++
T Consensus 86 ~~~~pk~VLii-GgG~G~~~r~~l~~~--~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 162 (295)
T d1inla_ 86 LHPNPKKVLII-GGGDGGTLREVLKHD--SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNE 162 (295)
T ss_dssp HSSSCCEEEEE-ECTTCHHHHHHTTST--TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSC
T ss_pred hCCCCceEEEe-cCCchHHHHHHHhcC--CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCC
Confidence 34678999999 999998766666432 35799999999999999999986 2 2578999999999999877889
Q ss_pred ccEEEEcCCcC-------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE-------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~-------~y-~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~ 202 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 202 (295)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence 99999996322 22 7899999999999775544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=8.7e-11 Score=93.35 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=89.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH---hhhc-c
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL---LLSH-F 109 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~---l~~l-~ 109 (211)
.++...+...+||+ +||+|..|..+++..+ +++|+++|.|+++++.|+++++.+.+++.+++++..+. +..+ .
T Consensus 17 ~~l~~~~~~~~lD~-t~G~Gghs~~il~~~~--~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~ 93 (192)
T d1m6ya2 17 EFLKPEDEKIILDC-TVGEGGHSRAILEHCP--GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGI 93 (192)
T ss_dssp HHHCCCTTCEEEET-TCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTC
T ss_pred HhhCCCCCCEEEEe-cCCCcHHHHHHHhcCC--CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCC
Confidence 33366788899999 7999999999999884 68999999999999999999986668899999987664 3333 4
Q ss_pred CCccEEEEcCCcC------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLE------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||.|++|...+ ...+.++.+.+.|+|||.+++..
T Consensus 94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 7999999996542 34678888899999999887754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.1e-11 Score=99.89 Aligned_cols=117 Identities=8% Similarity=0.059 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc----CCCcEEEEEeCChhHHHHHHHHhc--CCCCc--EEEEEc
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAH----QTGGRVVCILRRVEEYKLSKKILG--LDASH--VEFVIG 99 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~----~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~--V~~~~g 99 (211)
..+++..+....+.-+|||| |||+|..+..|+..+. ....++++||+++.|++.|+++++ ....+ +++...
T Consensus 28 l~~~l~~l~~~~~~~~VLDi-GcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 28 LPGIIGRIGDTKSEIKILSI-GGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp HHHHTTTTTTTCSEEEEEEE-TCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHhccCCCCCeEEEE-cCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 33444444444444479999 9999999999887652 224578999999999999999987 22334 455667
Q ss_pred chHHHhhh-----ccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 100 DAQSLLLS-----HFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 100 da~e~l~~-----l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++.+.... ..++||+|+.-.. .++....++.+.++|+|||.+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 160 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence 76654321 1579999997543 3467899999999999998877754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=7.2e-11 Score=101.19 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=87.5
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---cC
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---FR 110 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~~ 110 (211)
++...+.++|||+ .||+|..|+.||.. ..+|++||.++++++.|++|.+ ...++++|+.+++.+.+... ..
T Consensus 207 ~~~~~~~~~vlDL-ycG~G~fsl~La~~----~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 207 WLDVQPEDRVLDL-FCGMGNFTLPLATQ----AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp HHTCCTTCEEEEE-SCTTTTTHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred hhccCCCceEEEe-cccccccchhcccc----ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhc
Confidence 3445577899999 79999999999864 5799999999999999999998 55689999999998876433 46
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.+|+|++|.++.--.+.++.+.+ ++|.-.++|..|.
T Consensus 282 ~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp 317 (358)
T d1uwva2 282 GFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNP 317 (358)
T ss_dssp CCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCH
T ss_pred cCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCH
Confidence 79999999988755567777776 3677788888774
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.17 E-value=4.4e-11 Score=100.05 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=85.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---C--CCCcEEEEEcchHHHhhhccC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---L--DASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~--~~~~V~~~~gda~e~l~~l~~ 110 (211)
....+|++||-| |.|.|..+.++.+.. +..+|+.||+||+..+.|++++. + ...+++++.+|+.+.+.+..+
T Consensus 71 ~~~~~p~~vLii-GgG~G~~~~~~l~~~--~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~ 147 (274)
T d1iy9a_ 71 FTHPNPEHVLVV-GGGDGGVIREILKHP--SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSEN 147 (274)
T ss_dssp HHSSSCCEEEEE-SCTTCHHHHHHTTCT--TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCS
T ss_pred hccCCcceEEec-CCCCcHHHHHHHhcC--CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCC
Confidence 344678999999 999998877776432 35799999999999999999985 2 257899999999999987678
Q ss_pred CccEEEEcCCcC------c-HHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLE------N-HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~------~-y~~~l~~~~~~L~pgG~viv 143 (211)
+||+|++|...+ . -.++++.+.+.|+|+|.++.
T Consensus 148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~ 187 (274)
T d1iy9a_ 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (274)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence 999999997432 1 27899999999999775443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.15 E-value=6.8e-11 Score=94.38 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=69.0
Q ss_pred hcCCcCCChhHHHHHHHHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE
Q 041509 18 KMGQKAKEPNEAEFISALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV 94 (211)
Q Consensus 18 ~~~~~~~~~~~~~lL~~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V 94 (211)
++.|+.-++..+..+...+ ....+++|||+ |||+|..++.++.. ...+|++||+|+++++.|++|+. ++
T Consensus 23 ~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDl-GcGtG~l~i~a~~~---ga~~V~~vDid~~a~~~ar~N~~----~~ 94 (197)
T d1ne2a_ 23 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDA-GTGNGILACGSYLL---GAESVTAFDIDPDAIETAKRNCG----GV 94 (197)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEE-TCTTCHHHHHHHHT---TBSEEEEEESCHHHHHHHHHHCT----TS
T ss_pred ccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEe-CCCCcHHHHHHHHc---CCCcccccccCHHHHHHHHHccc----cc
Confidence 3456777777775443322 23468999999 99999988776653 24689999999999999999964 57
Q ss_pred EEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 95 EFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 95 ~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+++++|+.+ +.++||.|+.|.+.
T Consensus 95 ~~~~~D~~~----l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 95 NFMVADVSE----ISGKYDTWIMNPPF 117 (197)
T ss_dssp EEEECCGGG----CCCCEEEEEECCCC
T ss_pred cEEEEehhh----cCCcceEEEeCccc
Confidence 899999865 36799999999764
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.2e-11 Score=100.67 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=84.2
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CCCCcEEEEEcchHHHhhhccC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~~~~V~~~~gda~e~l~~l~~ 110 (211)
+...+|++||-| |.|.|..+-.+.+.- +..+|+.+|+||+.++.|++.+. ....+++++.+|+.+.+....+
T Consensus 74 ~~~~~pk~vLii-GgG~G~~~~~~l~~~--~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 150 (285)
T d2o07a1 74 CSHPNPRKVLII-GGGDGGVLREVVKHP--SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQD 150 (285)
T ss_dssp TTSSSCCEEEEE-ECTTSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSS
T ss_pred hhCcCcCeEEEe-CCCchHHHHHHHHcC--CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCC
Confidence 345679999999 999998777766432 35799999999999999999985 1257999999999999987678
Q ss_pred CccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
+||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 151 ~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 151 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 999999997432 22 6789999999999776554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=5.3e-10 Score=93.21 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=74.1
Q ss_pred CChhHHHHHHHHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 24 KEPNEAEFISALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 24 ~~~~~~~lL~~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
..|++..++.... ...+..+++|+ |||+|..++.+++. ++.+|+++|+++++++.|++|.+ +..+++.+..
T Consensus 91 PRpeTE~lv~~~~~~~~~~~~~~vld~-g~GsG~i~~~la~~---~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~ 166 (271)
T d1nv8a_ 91 PRPETEELVELALELIRKYGIKTVADI-GTGSGAIGVSVAKF---SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 166 (271)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEE-SCTTSHHHHHHHHH---SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred chhhhhhhhhhhhhhhccccccEEEEe-eeeeehhhhhhhhc---ccceeeechhhhhHHHHHHHHHHHcCCCceeEEee
Confidence 4566655544332 33556789999 79999998888753 37899999999999999999998 6678999999
Q ss_pred cchHHHhhhccCCccEEEEcC
Q 041509 99 GDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|..+.++...++||+|+.+.
T Consensus 167 ~~~~~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 167 GEFLEPFKEKFASIEMILSNP 187 (271)
T ss_dssp SSTTGGGGGGTTTCCEEEECC
T ss_pred cccccccccccCcccEEEEcc
Confidence 999988775568999999874
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.13 E-value=6.8e-11 Score=100.51 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=82.3
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhccC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l~~ 110 (211)
+...+|++||-| |.|.|..+-.+.+. ++..+|+.||+||+.++.|++++. .+ ..+++++.+|+.+.+....+
T Consensus 102 ~~~~~pk~VLIi-GgG~G~~~rellk~--~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~ 178 (312)
T d2b2ca1 102 FAHPDPKRVLII-GGGDGGILREVLKH--ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKN 178 (312)
T ss_dssp HHSSSCCEEEEE-SCTTSHHHHHHTTC--TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTT
T ss_pred hcCCCCCeEEEe-CCCchHHHHHHHHc--CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCC
Confidence 345679999999 99999877766643 224799999999999999999986 12 47899999999999987678
Q ss_pred CccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
+||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~ 218 (312)
T d2b2ca1 179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 218 (312)
T ss_dssp CEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence 999999997432 22 7789999999999775544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=1.4e-10 Score=97.73 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=83.5
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CCCCcEEEEEcchHHHhhhc-cCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
..+|++||-| |.|.|..+-.+.+.. +..+|+.||+||+.++.|++++. ....+++++.+|+.+.+.+. .++
T Consensus 78 ~~~pk~VLii-GgG~G~~~r~~l~~~--~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 78 IPNPKKVLVI-GGGDGGVLREVARHA--SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp SSCCCEEEEE-TCSSSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCcceEEe-cCCchHHHHHHHhcc--cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 4578999999 999998776665432 24699999999999999999985 22688999999999999765 458
Q ss_pred ccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 193 (290)
T d1xj5a_ 155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 193 (290)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence 99999997532 22 7899999999999775554
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=6.6e-10 Score=97.45 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=82.2
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-CCcEEE-EEcchHHH
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-ASHVEF-VIGDAQSL 104 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~~~V~~-~~gda~e~ 104 (211)
+...+.+++||+ |||+|..++.+|...+ .+++++||+++.+++.|+++.+ +. ...+.+ +.++..+.
T Consensus 212 l~Lkpgd~fLDL-GCG~G~~vl~aA~~~g--~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~ 288 (406)
T d1u2za_ 212 CQLKKGDTFMDL-GSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 288 (406)
T ss_dssp TTCCTTCEEEEE-SCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred hCCCCCCEEEeC-CCCCcHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhc
Confidence 356778899999 9999999999998763 4799999999999999998864 11 233444 34544322
Q ss_pred --hhhccCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 105 --LLSHFREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 105 --l~~l~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.......+|+|++..- .++....+.++.+.|+|||.+++.+....+
T Consensus 289 ~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~ 338 (406)
T d1u2za_ 289 NRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL 338 (406)
T ss_dssp HHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence 2222457899998753 346788899999999999988776654443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.06 E-value=5.8e-10 Score=87.51 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=84.8
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHh
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l 105 (211)
..+...+-......+|||+ .||||..++..+..- ..+|+.||.|++.++..++|++ +. .....++..|+.+.+
T Consensus 32 ealFn~l~~~~~~~~vLDl-FaGsG~~glEalSRG---A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l 107 (183)
T d2ifta1 32 ETLFNWLMPYIHQSECLDG-FAGSGSLGFEALSRQ---AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL 107 (183)
T ss_dssp HHHHHHHHHHHTTCEEEET-TCTTCHHHHHHHHTT---CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred HHHHHHhhhhcccceEeec-ccCccceeeeeeeec---ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence 3445555444577899999 599999999877542 4699999999999999999998 44 346889999998887
Q ss_pred hhc--cCCccEEEEcCCcC--cHHHHHHHHHh--cCCCCcEEEE
Q 041509 106 LSH--FREADFVLIDCNLE--NHEGVLRAVQA--GNKPNGAVVV 143 (211)
Q Consensus 106 ~~l--~~~fD~VfiD~~~~--~y~~~l~~~~~--~L~pgG~viv 143 (211)
... ..+||+||+|++-. .+...++.+.. +|+++|.+++
T Consensus 108 ~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 108 KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEE
Confidence 643 45799999998754 46778888765 4887554444
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.1e-10 Score=92.24 Aligned_cols=104 Identities=11% Similarity=0.013 Sum_probs=69.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE------------------------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV------------------------ 94 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V------------------------ 94 (211)
.++++|||+ |||+|..++..+.. ...+|+++|.++.+++.|+++++......
T Consensus 53 ~~g~~vLDi-GcG~g~~~~~~~~~---~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 53 VSGRTLIDI-GSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCCSEEEEE-TCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCcEEEEe-ccCCCHHHHHHhcc---cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 457899999 99999665544322 14689999999999999999886111111
Q ss_pred -------EEEEcchHHH--h---hhccCCccEEEEcC-------CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 95 -------EFVIGDAQSL--L---LSHFREADFVLIDC-------NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 95 -------~~~~gda~e~--l---~~l~~~fD~VfiD~-------~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++..|...- + ....++||+|+.-. +.++|...++.+.++|||||.+++.+-
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 1122222211 0 11135799998742 234688899999999999988877653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.4e-09 Score=87.82 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=68.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE------------------------
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV------------------------ 94 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V------------------------ 94 (211)
.++++|||+ |||+|..++.++.. ...+|+++|+++.+++.|+++++.....+
T Consensus 50 ~~g~~vLDl-GcG~G~~~~~~~~~---~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (257)
T d2a14a1 50 LQGDTLIDI-GSGPTIYQVLAACD---SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 125 (257)
T ss_dssp CCEEEEEES-SCTTCCGGGTTGGG---TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCEEEEE-CCCCCHhHHHHhcc---ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHH
Confidence 456789999 99999877666542 13479999999999999999986111111
Q ss_pred ------E-EEEcchH--HHh-hhccCCccEEEEcCC-------cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 95 ------E-FVIGDAQ--SLL-LSHFREADFVLIDCN-------LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 95 ------~-~~~gda~--e~l-~~l~~~fD~VfiD~~-------~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. ....+.. ..+ +...++||+|+.-.. .+++..+++.+.++|+|||.+++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 126 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 0 1111110 001 111568999987532 2367789999999999988877755
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.8e-08 Score=82.56 Aligned_cols=78 Identities=14% Similarity=0.027 Sum_probs=64.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh-c----cCCc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS-H----FREA 112 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~-l----~~~f 112 (211)
+..++||+ |||+|..++.|+...+ +.+++++|+++++++.|++|++ ++.+++.++..+..+.+.. + .++|
T Consensus 61 ~~~~~LDi-GtGsg~I~~~l~~~~~--~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 61 TLRRGIDI-GTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCEEEEE-SCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred ccceEEEe-CCCchHHHHHHHHhCC--CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence 34589999 8999999999998875 6899999999999999999998 6789999999876544321 1 4589
Q ss_pred cEEEEcCC
Q 041509 113 DFVLIDCN 120 (211)
Q Consensus 113 D~VfiD~~ 120 (211)
|+|+.+.+
T Consensus 138 D~ivsNPP 145 (250)
T d2h00a1 138 DFCMCNPP 145 (250)
T ss_dssp SEEEECCC
T ss_pred eEEEecCc
Confidence 99998754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.6e-08 Score=84.83 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=93.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
..++.....+...++...+..+|||+| +|.|.-|+.||..+.. .++|+++|.++..++..+++++ ....++++...|
T Consensus 76 ~~~QD~sS~l~~~~L~~~~g~~vLD~c-AapGgKt~~la~l~~~-~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d 153 (293)
T d2b9ea1 76 LILQDRASCLPAMLLDPPPGSHVIDAC-AAPGNKTSHLAALLKN-QGKIFAFDLDAKRLASMATLLARAGVSCCELAEED 153 (293)
T ss_dssp EEECCTGGGHHHHHHCCCTTCEEEESS-CTTCHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred EEEcCCcccccccccCCCccceEEecc-cchhhHHHHHHHHhcC-CceEeeecCCHHHHHHHHHHHHhcCccceeeeehh
Confidence 345555555666666778889999996 9999999999988754 7999999999999999999998 335779999999
Q ss_pred hHHHhhhc--cCCccEEEEcCCc------------------C-----cH----HHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 101 AQSLLLSH--FREADFVLIDCNL------------------E-----NH----EGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 101 a~e~l~~l--~~~fD~VfiD~~~------------------~-----~y----~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+...-+.. .++||.|++|++= . .+ .+.++.+. .++|||.++-+...+.+.
T Consensus 154 ~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 154 FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp GGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred hhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence 98764322 4689999999630 0 01 22333444 378888877767666543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=2.6e-08 Score=84.25 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=100.1
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
..++.....+...++...++.+|||+| ++.|.=|+.++..+.. .|.++++|.++..+...+++++ ....++.+...|
T Consensus 98 ~~vQD~aS~l~~~~l~~~~g~~vlD~C-AapGgKt~~l~~~~~~-~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d 175 (313)
T d1ixka_ 98 IYIQEASSMYPPVALDPKPGEIVADMA-AAPGGKTSYLAQLMRN-DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS 175 (313)
T ss_dssp EEECCHHHHHHHHHHCCCTTCEEEECC-SSCSHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC
T ss_pred EEEecccccchhhcccCCccceeeecc-cchhhhhHhhhhhccc-ccceeeeccCHHHHHHHHHHHHHHHhhcccccccc
Confidence 345566666777777788899999997 9999999999988854 8999999999999999999998 224678888888
Q ss_pred hHHHhhhccCCccEEEEcCCc------------------C-------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 101 AQSLLLSHFREADFVLIDCNL------------------E-------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~------------------~-------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+... +.....||.|++|++= + ...+.++.+.+.|+|||.++-+...+.+.
T Consensus 176 ~~~~-~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e 250 (313)
T d1ixka_ 176 SLHI-GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE 250 (313)
T ss_dssp GGGG-GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred cccc-ccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence 8766 3347899999999631 0 12567777888899999888777777654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.76 E-value=4.7e-08 Score=79.45 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
+++...+-+...+...+.++|||| |+|+|..|..|+.. +.+|++||+|+.+++..++++.. .+++++++||+++
T Consensus 5 ~d~~i~~~iv~~~~~~~~d~VlEI-GpG~G~LT~~Ll~~----~~~v~avE~D~~l~~~l~~~~~~-~~n~~i~~~D~l~ 78 (235)
T d1qama_ 5 TSKHNIDKIMTNIRLNEHDNIFEI-GSGKGHFTLELVQR----CNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQ 78 (235)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEE-CCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGG
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEE-CCCchHHHHHHHhC----cCceEEEeeccchHHHHHHHhhc-ccchhhhhhhhhh
Confidence 445555555555666788999999 99999999999975 47899999999999999988763 3689999999998
Q ss_pred HhhhccCCccEEEEcCCcCcHHHHHHHHH
Q 041509 104 LLLSHFREADFVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~y~~~l~~~~ 132 (211)
.-.. ......|+-+-+-.-....+..+.
T Consensus 79 ~~~~-~~~~~~vv~NLPYnIss~il~~ll 106 (235)
T d1qama_ 79 FKFP-KNQSYKIFGNIPYNISTDIIRKIV 106 (235)
T ss_dssp CCCC-SSCCCEEEEECCGGGHHHHHHHHH
T ss_pred cccc-ccccceeeeeehhhhhHHHHHHHH
Confidence 6321 223334553333222244444443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=6.3e-08 Score=80.69 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
.++.....+...+....+..+|||+| ++.|-=|+.|++... +|+|+++|.++..++..+++++ .....+.....|.
T Consensus 85 ~vQD~sS~l~~~~L~~~~g~~vLD~C-AaPGgKt~~la~l~~--~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~ 161 (284)
T d1sqga2 85 TVQDASAQGCMTWLAPQNGEHILDLC-AAPGGKTTHILEVAP--EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR 161 (284)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEES-CTTCHHHHHHHHHCT--TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT
T ss_pred EeccccccccccccCccccceeEecc-Cccccchhhhhhhhh--hhhhhhhhcchhhhhhHhhhhhcccccceeeecccc
Confidence 35666666777777888899999997 999999999998653 6999999999999999999998 2234455555554
Q ss_pred HHHhhhccCCccEEEEcCCc------------------C---c----HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 102 QSLLLSHFREADFVLIDCNL------------------E---N----HEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~------------------~---~----y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
........+.||.|++|++= . + ..+.++.+.++|+|||.++-+...+.+.
T Consensus 162 ~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 236 (284)
T d1sqga2 162 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE 236 (284)
T ss_dssp CTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred ccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence 43322225689999999631 0 0 2667888888999999888777777653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.64 E-value=1.1e-07 Score=82.33 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=84.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC--------------CCcEEEEEc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD--------------ASHVEFVIG 99 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~--------------~~~V~~~~g 99 (211)
++..++.+|||. .|++|.-++..|...+ ..+|++.|+|+++++.+++|++ +. ...+.+.+.
T Consensus 41 ~~~~~~~~vLD~-~sasG~rsiRya~E~~--~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (375)
T d2dula1 41 LNILNPKIVLDA-LSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHD 117 (375)
T ss_dssp HHHHCCSEEEES-SCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEES
T ss_pred HHHhCCCEEEEc-CCCccHHHHHHHHhCC--CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehh
Confidence 444578999999 7999999997776653 4699999999999999999997 32 235889999
Q ss_pred chHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+...+....+.||+|.+|.- +.-..+++.+.+.++.||.+.|.
T Consensus 118 Da~~~~~~~~~~fDvIDiDPf-Gs~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 118 DANRLMAERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp CHHHHHHHSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhHhhcCcCCcccCCCC-CCcHHHHHHHHHHhccCCEEEEE
Confidence 999888765678999999973 33467889999988887766553
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=2.1e-07 Score=74.24 Aligned_cols=104 Identities=8% Similarity=-0.016 Sum_probs=84.7
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...++++++|+ |||.|+=++-+|-..| +.+++.+|.+...+...++-.+ ...++|+++++++.+... ..+||+
T Consensus 61 ~~~~~~~~ilDi-GsGaG~PGi~laI~~p--~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~--~~~fD~ 135 (207)
T d1jsxa_ 61 APYLQGERFIDV-GTGPGLPGIPLSIVRP--EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS--EPPFDG 135 (207)
T ss_dssp GGGCCSSEEEEE-TCTTTTTHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC--CSCEEE
T ss_pred hhhhcCCceeee-eccCCceeeehhhhcc--cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc--ccccce
Confidence 344567899999 9999999999998764 6999999999999999988777 224689999999998643 468999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.=+- ......++.+.++++++|.++...
T Consensus 136 V~sRA~-~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 136 VISRAF-ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp EECSCS-SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ehhhhh-cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 875443 457889999999999988777643
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=8.3e-07 Score=73.66 Aligned_cols=101 Identities=15% Similarity=0.043 Sum_probs=76.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
+++...+-+...+...+.+.|||| |+|.|..|..|+.. +.+|++||+|+.+++..++.+. ...++++++++|+
T Consensus 5 ~d~~i~~kIv~~~~~~~~d~VlEI-GPG~G~LT~~Ll~~----~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~ 79 (278)
T d1zq9a1 5 KNPLIINSIIDKAALRPTDVVLEV-GPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 79 (278)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEE-CCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred CCHHHHHHHHHHhCCCCCCEEEEE-CCCchHHHHHHHhc----CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH
Confidence 456667767777777778899999 99999999999976 4699999999999999999887 3357899999999
Q ss_pred HHHhhhccCCccEEEEcCCcCcHHHHHHHHH
Q 041509 102 QSLLLSHFREADFVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~ 132 (211)
++.- ...++.|+-+-+-.--...+..+.
T Consensus 80 l~~~---~~~~~~vV~NLPY~Iss~il~~~~ 107 (278)
T d1zq9a1 80 LKTD---LPFFDTCVANLPYQISSPFVFKLL 107 (278)
T ss_dssp TTSC---CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred hhhh---hhhhhhhhcchHHHHHHHHHHHHH
Confidence 8752 234567774443322244555444
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.49 E-value=1.5e-07 Score=79.19 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHH----hhCCCCeEEEEccccHHHHHHHHHHHccC---CCcEEEEEeCChhHHHHHHHHhcCCCCcEEE
Q 041509 24 KEPNEAEFISALA----AGNNAQLMVVACANVANATTLALAAAAHQ---TGGRVVCILRRVEEYKLSKKILGLDASHVEF 96 (211)
Q Consensus 24 ~~~~~~~lL~~l~----~~~~~~~VLEi~Gtg~G~stl~la~a~~~---~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~ 96 (211)
.++..++++..++ ...+..+|||. +||+|...+.+...+.. ...+++++|+++.+++.|+.++........+
T Consensus 97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp-~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~ 175 (328)
T d2f8la1 97 TPDSIGFIVAYLLEKVIQKKKNVSILDP-ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTL 175 (328)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEET-TCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCEEEeC-CCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhh
Confidence 3455666665543 45566789999 69999988877665432 2358999999999999999998822356778
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcC---------------------cHHHHHHHHHhcCCCCcEEEE
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLE---------------------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~---------------------~y~~~l~~~~~~L~pgG~viv 143 (211)
.++|.....+ ..+||+|+.+++-. .+.-+++.+.++|+|+|.+++
T Consensus 176 ~~~d~~~~~~--~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~ 241 (328)
T d2f8la1 176 LHQDGLANLL--VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 241 (328)
T ss_dssp EESCTTSCCC--CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred hccccccccc--cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence 8888765433 57999999997532 133468888999999996533
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.48 E-value=1.5e-07 Score=73.99 Aligned_cols=108 Identities=18% Similarity=0.105 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH
Q 041509 25 EPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL 104 (211)
Q Consensus 25 ~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~ 104 (211)
++..++++..++...+..+|||. |||+|.....+.+.... ...++++|+++...+. ..+..++++|....
T Consensus 4 P~~i~~~m~~l~~~~~~~~IlDp-~~G~G~fl~~~~~~~~~-~~~i~g~ei~~~~~~~--------~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 4 PPEVVDFMVSLAEAPRGGRVLEP-ACAHGPFLRAFREAHGT-AYRFVGVEIDPKALDL--------PPWAEGILADFLLW 73 (223)
T ss_dssp CHHHHHHHHHHCCCCTTCEEEEE-TCTTCHHHHHHHHHHCS-CSEEEEEESCTTTCCC--------CTTEEEEESCGGGC
T ss_pred CHHHHHHHHHhcCCCCcCEEEEC-CCchHHHHHHHHHhccc-cceEEeeecCHHHHhh--------cccceeeeeehhcc
Confidence 45678899999988889999999 69999988888777653 6789999999865432 34567889988765
Q ss_pred hhhccCCccEEEEcCCcC--------------------------------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 105 LLSHFREADFVLIDCNLE--------------------------------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~--------------------------------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.. ...||+|+.+.+-. .|..+++.+.+.|+|||.+++.
T Consensus 74 ~~--~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 74 EP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp CC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc--ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 43 57899999875310 1345677888889998886444
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.45 E-value=1.5e-08 Score=83.01 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=71.5
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.||. .+++...+-+...+...+.++|||| |||+|..|..|++. +.+|++||+|+++++.+++.+.. ..+++++
T Consensus 7 ~GQnFL~d~~ii~kIv~~~~~~~~d~VLEI-GpG~G~LT~~L~~~----~~~v~aIE~D~~l~~~l~~~~~~-~~n~~ii 80 (245)
T d1yuba_ 7 YSQNFLTSEKVLNQIIKQLNLKETDTVYEI-GTGKGHLTTKLAKI----SKQVTSIELDSHLFNLSSEKLKL-NTRVTLI 80 (245)
T ss_dssp SCCCBCCCTTTHHHHHHHCCCCSSEEEEEC-SCCCSSCSHHHHHH----SSEEEESSSSCSSSSSSSCTTTT-CSEEEEC
T ss_pred CCCcccCCHHHHHHHHHhcCCCCCCeEEEE-CCCccHHHHHHHhh----cCceeEeeecccchhhhhhhhhh-ccchhhh
Confidence 3555 3566667767777777788899999 99999999999976 46999999999999888777653 3689999
Q ss_pred EcchHHHhhhccCCccEEEEcC
Q 041509 98 IGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++|+++.-. ....++.|+-.-
T Consensus 81 ~~D~l~~~~-~~~~~~~vv~NL 101 (245)
T d1yuba_ 81 HQDILQFQF-PNKQRYKIVGNI 101 (245)
T ss_dssp CSCCTTTTC-CCSSEEEEEEEC
T ss_pred hhhhhcccc-ccceeeeEeeee
Confidence 999997621 134455555343
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1.1e-07 Score=77.95 Aligned_cols=75 Identities=13% Similarity=-0.006 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
+++...+-+...+...+.+.|||| |+|.|+.|-.|++. +.+|++||+|+.+++..++.+.. .++++++++|+++
T Consensus 5 ~d~~~~~~Iv~~~~~~~~d~vlEI-GpG~G~LT~~Ll~~----~~~v~aiEiD~~l~~~L~~~~~~-~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 5 NDQFVIDSIVSAINPQKGQAMVEI-GPGLAALTEPVGER----LDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMT 78 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEE-CCTTTTTHHHHHTT----CSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGG
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEE-CCCchHHHHHHHcc----CCceEEEEeccchhHHHHHHhhh-ccchhHHhhhhhh
Confidence 455666666666777788999999 99999999999864 57899999999999998875542 3689999999987
Q ss_pred H
Q 041509 104 L 104 (211)
Q Consensus 104 ~ 104 (211)
+
T Consensus 79 ~ 79 (252)
T d1qyra_ 79 F 79 (252)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=2.7e-06 Score=66.24 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=77.4
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh---hc-cCCc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL---SH-FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~---~l-~~~f 112 (211)
...+...++|. .+|.|.-|..+... +|+|+++|.||++++.|++. ...++.+++++..++-. .+ .+.+
T Consensus 15 ~~~~g~~~vD~-T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~v 86 (182)
T d1wg8a2 15 AVRPGGVYVDA-TLGGAGHARGILER----GGRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVERV 86 (182)
T ss_dssp TCCTTCEEEET-TCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCCCCEEEEe-CCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCCcc
Confidence 56788899999 68888766777652 68999999999999998864 34689999998776533 22 4689
Q ss_pred cEEEEcCCcC------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLE------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|.|++|.... .....++.....|+|||.+++..
T Consensus 87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 87 DGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp EEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 9999997543 22446788888899988877644
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.33 E-value=6e-07 Score=73.01 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=75.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.++|||| |+|+|..++.++++.| +.+++.+|.. +.++. ....++|+++.||..+-+| ..|++++-
T Consensus 80 ~~~~~vlDi-GGG~G~~~~~l~~~~P--~l~~~v~Dlp-~vi~~-----~~~~~ri~~~~gd~~~~~p----~~D~~~l~ 146 (244)
T d1fp1d2 80 EGISTLVDV-GGGSGRNLELIISKYP--LIKGINFDLP-QVIEN-----APPLSGIEHVGGDMFASVP----QGDAMILK 146 (244)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEECH-HHHTT-----CCCCTTEEEEECCTTTCCC----CEEEEEEE
T ss_pred cCCcEEEEe-cCCCcHHHHHHHHHCC--CCeEEEecch-hhhhc-----cCCCCCeEEecCCcccccc----cceEEEEe
Confidence 446789999 9999999999999975 5789999973 33321 1346899999999876443 45999885
Q ss_pred CCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 119 CNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 119 ~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.-. ++-...++.+.+.|+|||.++|+|.++.
T Consensus 147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 432 3346788999999999999999997764
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.32 E-value=7.8e-07 Score=72.75 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=63.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----C------CCCcEEEEEcchHHHhhhccCC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----L------DASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~------~~~~V~~~~gda~e~l~~l~~~ 111 (211)
.+|||. -+|.|.-++.+|.. +++|+.||.+|..+...+.+++ . ...++++++||+.+++....++
T Consensus 90 ~~VlD~-TaGlG~Da~vlA~~----G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~ 164 (250)
T d2oyra1 90 PDVVDA-TAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_dssp CCEEET-TCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSC
T ss_pred CEEEEC-CCcccHHHHHHHhC----CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCC
Confidence 479999 69999999999865 6799999999999888887775 1 1248999999999999877788
Q ss_pred ccEEEEcCCc
Q 041509 112 ADFVLIDCNL 121 (211)
Q Consensus 112 fD~VfiD~~~ 121 (211)
||+|++|...
T Consensus 165 ~DvIYlDPMF 174 (250)
T d2oyra1 165 PQVVYLDPMF 174 (250)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999854
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.22 E-value=1.3e-06 Score=70.95 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
...++|||| |+|+|..++.++++.| +.+++..|. |+.++.+ +..++|+++.||..+-. ..+|++++-
T Consensus 79 ~~~~~vvDv-GGG~G~~~~~l~~~~P--~l~~~v~Dl-p~vi~~~-----~~~~rv~~~~gD~f~~~----p~aD~~~l~ 145 (244)
T d1fp2a2 79 DGLESIVDV-GGGTGTTAKIICETFP--KLKCIVFDR-PQVVENL-----SGSNNLTYVGGDMFTSI----PNADAVLLK 145 (244)
T ss_dssp TTCSEEEEE-TCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHTTC-----CCBTTEEEEECCTTTCC----CCCSEEEEE
T ss_pred cCceEEEEe-cCCccHHHHHHHHhCC--CCeEEEecC-HHHHHhC-----cccCceEEEecCcccCC----CCCcEEEEE
Confidence 345789999 9999999999999975 579999998 3333221 34689999999987632 368999985
Q ss_pred C-----CcCcHHHHHHHHHhcCCCC---cEEEEEecCCCC
Q 041509 119 C-----NLENHEGVLRAVQAGNKPN---GAVVVGYNAFRK 150 (211)
Q Consensus 119 ~-----~~~~y~~~l~~~~~~L~pg---G~viv~dn~~~~ 150 (211)
. +.++-.++++.+.+.|+|| |.++|.|.++..
T Consensus 146 ~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~ 185 (244)
T d1fp2a2 146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185 (244)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence 3 3334467888999999998 778888877653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.20 E-value=1.7e-06 Score=67.59 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=71.7
Q ss_pred HHHHHHHhh-CCCCeEEEEccccHHHHHHHH----HHHccCC--CcEEEEEeCChhHHHHHHHHh---------------
Q 041509 30 EFISALAAG-NNAQLMVVACANVANATTLAL----AAAAHQT--GGRVVCILRRVEEYKLSKKIL--------------- 87 (211)
Q Consensus 30 ~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~l----a~a~~~~--~g~v~tiE~~~~~~~~Ar~~~--------------- 87 (211)
++|...+.. .++-+|+.+ ||++|--+..| .++.... .-+|++.|+++.+++.|++..
T Consensus 13 ~~L~~~~~~~~~~lrIwsa-GCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~ 91 (193)
T d1af7a2 13 PILAEHARRRHGEYRVWSA-AASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQ 91 (193)
T ss_dssp HHHHHHHHHSCSCEEEEES-CCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHH
T ss_pred HHHHHHHhccCCCeEEEEe-CCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHh
Confidence 344444333 345589999 99999754443 3332221 247999999999999998432
Q ss_pred ---c--CCC------------CcEEEEEcchHHHhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 88 ---G--LDA------------SHVEFVIGDAQSLLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 88 ---~--~~~------------~~V~~~~gda~e~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. +.. ..+++...+..+..+...++||+||+=. +.+...+.++.+.+.|+|||.+++..
T Consensus 92 ~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 92 RYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp HHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred hceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1 100 1234444444332221247899999743 33445789999999999988777754
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.17 E-value=2.8e-06 Score=73.93 Aligned_cols=128 Identities=12% Similarity=-0.045 Sum_probs=95.4
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC-----------cEEEEEeCChhHHHHHHHHhc
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG-----------GRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~-----------g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
|+..-++...+++..++...+..+|+|-| ||+|.+-+.+...+.... ..++++|+++.+..+|+.|+-
T Consensus 142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPa-cGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCINPQMGETVCDPA-CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETT-CTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hhhccchhhhHhhheeccCcccceeeccc-cccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 33456677889999998888889999994 999998888777665322 249999999999999999886
Q ss_pred --CC-CCcEEEEEcchHHHhhhccCCccEEEEcCCcC--------------------cHHHHHHHHHhcCCCCcEEEEE-
Q 041509 89 --LD-ASHVEFVIGDAQSLLLSHFREADFVLIDCNLE--------------------NHEGVLRAVQAGNKPNGAVVVG- 144 (211)
Q Consensus 89 --~~-~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~--------------------~y~~~l~~~~~~L~pgG~viv~- 144 (211)
+. .....+..+|..+.-+ ..+||+|+.+.+.. .+..+++.+..+|++||.+.++
T Consensus 221 l~g~~~~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HTTCCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCccccceeecCchhhhhc--ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 43 3457788999876432 57899999886431 1356889999999998865333
Q ss_pred e-cCCCC
Q 041509 145 Y-NAFRK 150 (211)
Q Consensus 145 d-n~~~~ 150 (211)
- .++..
T Consensus 299 p~~~L~~ 305 (425)
T d2okca1 299 PDNVLFE 305 (425)
T ss_dssp EHHHHHC
T ss_pred chHHhhh
Confidence 3 45533
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.15 E-value=4.6e-06 Score=67.62 Aligned_cols=101 Identities=12% Similarity=-0.022 Sum_probs=82.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh--ccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS--HFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~--l~~~fD~V 115 (211)
..++++|+ |||.|+=++-||-..+ +.+++-+|.+.......+.-.+ ++ ++++++++.+.+.... ..++||+|
T Consensus 70 ~~~~ilDi-GSGaGfPGi~laI~~p--~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 70 QVNTICDV-GAGAGFPSLPIKICFP--HLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GCCEEEEE-CSSSCTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCeEEee-cCCCchHHHHHHHhCC--CccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEE
Confidence 46789999 9999999999998774 6899999999999888877766 44 6899999999887432 24689999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.=+-. .....++.+.++++++|.++...
T Consensus 146 ~sRAva-~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 146 TARAVA-RLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp EEECCS-CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEhhhh-CHHHHHHHHhhhcccCCEEEEEC
Confidence 976543 57789999999999988776644
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.14 E-value=3e-06 Score=68.43 Aligned_cols=97 Identities=16% Similarity=0.056 Sum_probs=73.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+.++|||| |||+|..++.++++.| +.+++.+|..+. ++. ....++++++.+|..+-+| ..|..++-.
T Consensus 81 ~~~~vvDv-GGG~G~~~~~l~~~~P--~l~~~v~Dlp~v-i~~-----~~~~~r~~~~~~d~~~~~P----~ad~~~l~~ 147 (243)
T d1kyza2 81 GLKSLVDV-GGGTGAVINTIVSKYP--TIKGINFDLPHV-IED-----APSYPGVEHVGGDMFVSIP----KADAVFMKW 147 (243)
T ss_dssp SCSEEEEE-TCTTSHHHHHHHHHCT--TSEEEEEECTTT-TTT-----CCCCTTEEEEECCTTTCCC----CCSCEECSS
T ss_pred CCcEEEEe-cCCCcHHHHHHHHHCC--CCeEEEcccHHh-hhh-----cccCCceEEecccccccCC----CcceEEEEE
Confidence 35789999 9999999999999975 689999998653 211 1345789999999876544 245555432
Q ss_pred -----CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 -----NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 -----~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.++-...++.+.+.|+|||.++|.|.++.
T Consensus 148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~ 182 (243)
T d1kyza2 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP 182 (243)
T ss_dssp SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence 223457789999999999999999887765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=7.7e-06 Score=61.99 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=66.5
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD 113 (211)
+...+.++||-+ |+| +|..++.+|++. +.+|+++|.+++..+.|++. | .+ +++. .+-.+......+.+|
T Consensus 23 ~~~~~g~~vlI~-GaG~vG~~a~q~ak~~---G~~vi~~~~~~~k~~~a~~l--G-a~--~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 23 NGCGPGKKVGIV-GLGGIGSMGTLISKAM---GAETYVISRSSRKREDAMKM--G-AD--HYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TTCSTTCEEEEE-CCSHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHHHH--T-CS--EEEEGGGTSCHHHHSCSCEE
T ss_pred hCcCCCCEEEEE-CCCCcchhHHHHhhhc---cccccccccchhHHHHhhcc--C-Cc--EEeeccchHHHHHhhhcccc
Confidence 456678899999 776 888888888875 67999999999999999875 2 12 1222 222233344467899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+++..... .....++.+.+.|+|+|.++++
T Consensus 94 ~vi~~~~~-~~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 94 LIVVCASS-LTDIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEEECCSC-STTCCTTTGGGGEEEEEEEEEC
T ss_pred eEEEEecC-CccchHHHHHHHhhccceEEEe
Confidence 98753221 1112245667788998887764
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=3.5e-05 Score=68.60 Aligned_cols=130 Identities=9% Similarity=-0.025 Sum_probs=91.0
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC----------------cEEEEEeCChhHHHHH
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG----------------GRVVCILRRVEEYKLS 83 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~----------------g~v~tiE~~~~~~~~A 83 (211)
|+..-++...+++..++...+..+|+|-| ||+|-+-+.+...+.... ..++++|+++.+..+|
T Consensus 144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPa-cGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLKPQPREVVQDPA-AGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETT-CTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred chhccccchhHhhhhcccCccchhhcchh-hhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 44556677889999999888888999995 999998777666554321 2589999999999999
Q ss_pred HHHhc--CCCC----cEEEEEcchHHHhhhccCCccEEEEcCCcC-----------------cHHHHHHHHHhcCCCCcE
Q 041509 84 KKILG--LDAS----HVEFVIGDAQSLLLSHFREADFVLIDCNLE-----------------NHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 84 r~~~~--~~~~----~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----------------~y~~~l~~~~~~L~pgG~ 140 (211)
+.|+- +... .-.+..++....-.....+||+|+.+.+.. .+.-+++.+...|+|||.
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr 302 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 302 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCc
Confidence 99886 3221 234556665543222256899999886431 134588999999999987
Q ss_pred EEEE--ecCCCC
Q 041509 141 VVVG--YNAFRK 150 (211)
Q Consensus 141 viv~--dn~~~~ 150 (211)
+.++ ++++..
T Consensus 303 ~aiIlP~~~Lf~ 314 (524)
T d2ar0a1 303 AAVVVPDNVLFE 314 (524)
T ss_dssp EEEEEEHHHHHC
T ss_pred EEEEEehHHhhh
Confidence 5433 456543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=6.7e-05 Score=57.86 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh------hc-cCC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL------SH-FRE 111 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~------~l-~~~ 111 (211)
.+..+|||+ ||+.|..+-++++.... .+.++++|..|- + ....+.++.||..+... .. .++
T Consensus 21 k~~~~vlDL-g~aPGgw~q~~~~~~~~-~~~v~~vDl~~~---------~-~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 21 KPGMTVVDL-GAAPGGWSQYVVTQIGG-KGRIIACDLLPM---------D-PIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CTTCEEEEE-SCTTCHHHHHHHHHHCT-TCEEEEEESSCC---------C-CCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEE-eccCCcceEEEEeeccc-cceEEEeecccc---------c-ccCCceEeecccccchhhhhhhhhccCcc
Confidence 467789999 89999999999887754 799999998762 2 24668999999754321 11 468
Q ss_pred ccEEEEcCCcC---c-----------HHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE---N-----------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~---~-----------y~~~l~~~~~~L~pgG~viv 143 (211)
+|+|+.|+... + ....+..+.+.|++||.+++
T Consensus 89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~ 134 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 99999997532 1 14556666778999887765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.82 E-value=3.5e-05 Score=57.94 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=67.1
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc----chHH---Hhhh
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG----DAQS---LLLS 107 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g----da~e---~l~~ 107 (211)
+...+.++||-+ |+| .|..++.++++. +.+|+.+|.+++..+.|++.-. ...+... +..+ .+..
T Consensus 22 ~~~~~g~~vlV~-G~G~vG~~~~~~ak~~---Ga~vi~v~~~~~r~~~a~~~ga----~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 22 AGVQLGTTVLVI-GAGPIGLVSVLAAKAY---GAFVVCTARSPRRLEVAKNCGA----DVTLVVDPAKEEESSIIERIRS 93 (170)
T ss_dssp HTCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHTTC----SEEEECCTTTSCHHHHHHHHHH
T ss_pred hCCCCCCEEEEE-cccccchhhHhhHhhh---cccccccchHHHHHHHHHHcCC----cEEEeccccccccchhhhhhhc
Confidence 456678899999 766 788888888775 6799999999999999987532 1222211 1122 2222
Q ss_pred c-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. ...+|+||-.... ...++.+.+.++|+|.+++.-
T Consensus 94 ~~g~g~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 94 AIGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HSSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCceeeecCCC---hHHHHHHHHHHhcCCceEEEe
Confidence 1 4579988654443 256777888899999887643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=5.9e-05 Score=57.48 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=65.0
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH---hhhc--c
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL---LLSH--F 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~---l~~l--~ 109 (211)
.+..++++||-+ |+| +|..++.+|++.. ..+|+.+|.+++..+.|++. |...-+.....+..+. +.++ .
T Consensus 24 ~~~~~G~~VlV~-GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 24 PESFAGKTVVIQ-GAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEI--GADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp SSCCBTCEEEEE-CCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHT--TCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred hCCCCCCEEEEE-CCCccchhheecccccc--cccccccccccccccccccc--cceEEEeccccchHHHHHHHHHhhCC
Confidence 344567899999 766 5888888888762 24899999999999999764 1111122222333333 2222 3
Q ss_pred CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+|+||-..... ..++.+.+.|+|+|.++++-
T Consensus 99 ~g~Dvvid~vG~~---~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 99 RGADFILEATGDS---RALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp SCEEEEEECSSCT---THHHHHHHHEEEEEEEEECC
T ss_pred CCceEEeecCCch---hHHHHHHHHhcCCCEEEEEe
Confidence 4699988544332 34666677788888876644
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.54 E-value=0.0001 Score=56.07 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=67.5
Q ss_pred HHHhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cC
Q 041509 34 ALAAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~ 110 (211)
..+...+.++||-+ |+|. |.+++.+|+... ..+|+++|.+++..+.|++. . ...-+.....+..+.+.++ ..
T Consensus 21 ~~a~~~~g~~VlI~-GaG~vGl~~~q~ak~~G--a~~Vi~~d~~~~r~~~a~~l-G-a~~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 21 ELADIEMGSSVVVI-GIGAVGLMGIAGAKLRG--AGRIIGVGSRPICVEAAKFY-G-ATDILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp HHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTT--CSCEEEECCCHHHHHHHHHH-T-CSEEECGGGSCHHHHHHHHTTTS
T ss_pred HHhCCCCCCEEEEE-cCCcchhhhhhhhhccc--ccccccccchhhhHHHHHhh-C-ccccccccchhHHHHHHHHhhcc
Confidence 34566788889989 7765 888888888652 25799999999999999864 2 1122222233344444333 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+|+||-..... ..++++.+.++|+|.+++.
T Consensus 96 G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMAGGGS---ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEECSSCT---THHHHHHHHEEEEEEEEEC
T ss_pred CcceEEEccCCH---HHHHHHHHHHhcCCEEEEE
Confidence 699887655443 3456667778888877663
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.48 E-value=0.00019 Score=53.54 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+..++.++||-+ |+ +.|..++.+++.. +.+|+++|.+++..+.|++. +...-+.....|..+.+......+|.
T Consensus 23 ~~~~~g~~VlV~-GaG~vG~~~~~~ak~~---G~~Vi~~~~~~~~~~~a~~~--Ga~~~i~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 23 TNARPGQWVAIS-GIGGLGHVAVQYARAM---GLHVAAIDIDDAKLELARKL--GASLTVNARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp HTCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHT--TCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred hCCCCCCEEEEe-eccccHHHHHHHHHHc---CCccceecchhhHHHhhhcc--CccccccccchhHHHHHHHhhcCCcc
Confidence 566778889889 54 5688888888775 67999999999999999864 21111222223344444333445666
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++.+.... ..++.+.+.|+|+|.++++
T Consensus 97 ~i~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 97 VLVTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccccc---hHHHHHHHHhcCCcEEEEE
Confidence 66665543 5678888999998887764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.46 E-value=0.00016 Score=54.70 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=68.9
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCcc
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD 113 (211)
++..+.++||-+ |+ +.|.+++.++++.. ..+|+.+|.+++..+.|++. +...-+.....|..+.+.++ ++.+|
T Consensus 24 ~~~~~g~~VlI~-G~G~iG~~~~~~ak~~g--~~~v~~~~~~~~k~~~a~~~--Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 24 LKVTPASSFVTW-GAGAVGLSALLAAKVCG--ASIIIAVDIVESRLELAKQL--GATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp TCCCTTCEEEEE-SCSHHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred hCCCCCCEEEEe-CCCHHHhhhhhcccccc--cceeeeeccHHHHHHHHHHc--CCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 355677889989 54 46777788888764 46889999999999999875 21111222223444444444 56899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.||-..... ..++.+.+.++|+|.++++
T Consensus 99 ~vid~~G~~---~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 99 FALESTGSP---EILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEECSCCH---HHHHHHHHTEEEEEEEEEC
T ss_pred EEEEcCCcH---HHHHHHHhcccCceEEEEE
Confidence 988665543 5677888889998887764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.43 E-value=0.00019 Score=60.00 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=60.9
Q ss_pred CCc-CCChhHHHHHHHHHhhC------CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCC
Q 041509 20 GQK-AKEPNEAEFISALAAGN------NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDAS 92 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~------~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~ 92 (211)
||+ .+.+...+-+...+... +...|||| |.|.|..|..|..... ..+|++||.|+...+.-++.+. .+
T Consensus 16 GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEI-GPG~G~LT~~Ll~~~~--~~~v~~iE~D~~~~~~L~~~~~--~~ 90 (322)
T d1i4wa_ 16 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDL-YPGVGIQSAIFYNKYC--PRQYSLLEKRSSLYKFLNAKFE--GS 90 (322)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEE-SCTTCHHHHHHHHHHC--CSEEEEECCCHHHHHHHHHHTT--TS
T ss_pred cccccCCHHHHHHHHHHhcCCccccccCCCeEEEE-CCCCCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHhcc--CC
Confidence 443 46677776555544432 45679999 9999999999987642 3589999999999998887765 36
Q ss_pred cEEEEEcchHHH
Q 041509 93 HVEFVIGDAQSL 104 (211)
Q Consensus 93 ~V~~~~gda~e~ 104 (211)
+++++++|+...
T Consensus 91 ~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 91 PLQILKRDPYDW 102 (322)
T ss_dssp SCEEECSCTTCH
T ss_pred CcEEEeCchhhc
Confidence 799999998754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.39 E-value=0.00026 Score=54.80 Aligned_cols=104 Identities=13% Similarity=-0.033 Sum_probs=71.0
Q ss_pred HHhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc--cC
Q 041509 35 LAAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH--FR 110 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l--~~ 110 (211)
.+...+.+.||-+ |||. |..++.+|++.. .++|+.+|.+++.++.|++.=. +.+ .-...|..+.+.++ ..
T Consensus 20 ~a~v~~G~tVlV~-GaG~vGl~a~~~ak~~g--a~~Vi~~d~~~~rl~~a~~~Ga---~~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 20 TAGVGPGSTVYVA-GAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQGF---EIADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp HTTCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTC---EEEETTSSSCHHHHHHHHHSSS
T ss_pred HhCCCCCCEEEEE-CcCHHHHHHHHHHHhhc--ccceeeecccchhhHhhhhccc---cEEEeCCCcCHHHHHHHHhCCC
Confidence 4677788999999 8876 777888887763 5799999999999999987521 111 11123444333333 45
Q ss_pred CccEEEEcCCcC------------cHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLE------------NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~------------~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+|.+|-....+ .-...++.+.+.++|+|.+++.
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 789988443211 1246889999999999988764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00083 Score=50.26 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=66.7
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE-EcchHHHhhh----cc
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV-IGDAQSLLLS----HF 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~-~gda~e~l~~----l~ 109 (211)
+...+.+.||-+ |+ +.|..++.++.+.. ..+|+.+|.+++.++.|++. | .+.+... ..+..+.... ..
T Consensus 22 ~~~~~gd~VlI~-G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~--G-a~~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 22 GGVTLGHKVLVC-GAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEI--G-ADLVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp HTCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHT--T-CSEEEECSSCCHHHHHHHHHHHHT
T ss_pred hCCCCCCEEEEE-CCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHh--C-CcccccccccccccccccccccCC
Confidence 455677889999 66 46777777887752 34899999999999999864 1 1222221 2233332221 14
Q ss_pred CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+|+||-.... ...++.+.++++++|.+++.-
T Consensus 96 ~g~Dvvid~~G~---~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 96 CKPEVTIECTGA---EASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp SCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred CCceEEEeccCC---chhHHHHHHHhcCCCEEEEEe
Confidence 589998755443 256788888899999887743
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00031 Score=52.85 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=66.4
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
++..+.++||-. | .++|..++.+|++. +.+|++++.+++..+.+++. |...-+.....|..+.+... .+.
T Consensus 24 ~~~~~g~~VlV~-Ga~G~vG~~aiq~a~~~---G~~vi~~~~~~~~~~~~~~~--Ga~~vi~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 24 ACVKAGESVLVH-GASGGVGLAACQIARAY---GLKILGTAGTEEGQKIVLQN--GAHEVFNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp SCCCTTCEEEEE-TCSSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHT--TCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred hCCCCCCEEEEE-ecccccccccccccccc---Cccccccccccccccccccc--CcccccccccccHHHHhhhhhccCC
Confidence 344577889999 6 47888888888876 67999999999888888763 22222222223444444333 457
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+|| |+.-. ..++...+.|+|+|.++.+
T Consensus 98 ~d~v~-d~~g~---~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 98 IDIII-EMLAN---VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEEE-ESCHH---HHHHHHHHHEEEEEEEEEC
T ss_pred ceEEe-ecccH---HHHHHHHhccCCCCEEEEE
Confidence 99776 44322 4677788889998887764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00037 Score=52.43 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=65.9
Q ss_pred HhhCCCCeEEEE-ccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVA-CANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi-~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
++..+.++||-. +|++.|..++.+|++. +.+|++++.+++..+.+++. |...-|.....|..+.+.++ ...+
T Consensus 24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~---Ga~Vi~~~~s~~k~~~~~~l--Ga~~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL---GAKLIGTVGTAQKAQSALKA--GAWQVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred hCCCCCCEEEEEccccccchHHHHHHHHh---CCeEeecccchHHHHHHHhc--CCeEEEECCCCCHHHHHHHHhCCCCe
Confidence 345567889888 2344888888898875 68999999999999998864 22222222234444444444 4578
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+| +|+.-. +.++.+.+.++|+|.+++.
T Consensus 99 d~v-~d~~g~---~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 99 RVV-YDSVGR---DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp EEE-EECSCG---GGHHHHHHTEEEEEEEEEC
T ss_pred EEE-EeCccH---HHHHHHHHHHhcCCeeeec
Confidence 865 455433 3456777788888887663
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.07 E-value=0.00078 Score=51.08 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=68.4
Q ss_pred HhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc--hHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD--AQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd--a~e~l~~l-~~~ 111 (211)
+...+.+.||-+ |+|. |..++.+++++. ..+|+.+|.+++..+.|++.=. ..-+.....| ........ .+.
T Consensus 24 a~v~~G~~VlV~-G~G~iGl~a~~~ak~~G--a~~Vi~~d~~~~r~~~a~~~Ga--~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 24 AKVTPGSTCAVF-GLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKALGA--TDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp SCCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTC--SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEE-CCChHHHHHHHHHHHhC--CceeeeeccchHHHHHHHHhCC--CcccCCccchhhhhhhHhhhhcCC
Confidence 345677899999 7776 999999999873 4689999999999999987421 1111111111 12222222 568
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
+|++|-....+ ..+++..+.++|+ |.++++
T Consensus 99 ~d~vie~~G~~---~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 99 VDYSLDCAGTA---QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp BSEEEESSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CcEEEEecccc---hHHHHHHHHhhcCCeEEEec
Confidence 99998655433 5788888888886 887764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.04 E-value=0.00098 Score=49.67 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=66.2
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
+...++++||-+ |+ +.|..++.++.+.. ..+|+.+|.+++..+.+++.=. ...+..-..|..+.+.+. .+.
T Consensus 23 ~~~~~g~~vlV~-G~~G~vG~~~~~~~~~~g--~~~V~~~~~~~~~~~~~~~~Ga--~~~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 23 ASLDPTKTLLVV-GAGGGLGTMAVQIAKAVS--GATIIGVDVREEAVEAAKRAGA--DYVINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCCTTCEEEEE-TTTSHHHHHHHHHHHHHT--CCEEEEEESSHHHHHHHHHHTC--SEEEETTTSCHHHHHHHHTTTSC
T ss_pred hCCCCCCEEEEE-eccccceeeeeecccccc--cccccccccchhhHHHHHHcCC--ceeeccCCcCHHHHHHHHhhccc
Confidence 456678899999 74 57887887887763 4699999999999999987521 111111112333333322 456
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||.||-..... ..++.+.+.++|+|.++++
T Consensus 98 ~d~vid~~g~~---~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 98 VDAVIDLNNSE---KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEEEESCCCH---HHHTTGGGGEEEEEEEEEC
T ss_pred chhhhcccccc---hHHHhhhhhcccCCEEEEe
Confidence 99777554432 5677788889998887764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.87 E-value=0.002 Score=47.56 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=66.0
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...+.++||-. |+ +.|..++.++.+. +.+|+.++.+++..+.+++.=. ..-+.....|..+.+......+|.
T Consensus 23 ~~~~~g~~vlv~-G~G~iG~~a~~~a~~~---g~~v~~~~~~~~r~~~~k~~Ga--~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
T d1rjwa2 23 TGAKPGEWVAIY-GIGGLGHVAVQYAKAM---GLNVVAVDIGDEKLELAKELGA--DLVVNPLKEDAAKFMKEKVGGVHA 96 (168)
T ss_dssp HTCCTTCEEEEE-CCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHTTC--SEEECTTTSCHHHHHHHHHSSEEE
T ss_pred hCCCCCCEEEEe-ecccchhhhhHHHhcC---CCeEeccCCCHHHhhhhhhcCc--ceecccccchhhhhcccccCCCce
Confidence 456778888888 54 4677777777764 6799999999999999987411 111111122444444444455666
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++.|+.- ...++...+.|+|+|.++++
T Consensus 97 ~v~~~~~---~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 97 AVVTAVS---KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEESSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred EEeecCC---HHHHHHHHHHhccCCceEec
Confidence 6666543 36678888889998887764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.84 E-value=0.0015 Score=46.79 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCcCcHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNLENHEGV 127 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~~~y~~~ 127 (211)
|.|..+..+++.+...+-.|+.||.||+.++.+++.+ .+.++.||+.+ .+... -+..|.++.-.+...-.-.
T Consensus 7 G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~~ 81 (132)
T d1lssa_ 7 GIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNLM 81 (132)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHHH
Confidence 4588888899888665678999999999998876653 25689999864 45443 3578988764443322223
Q ss_pred HHHHHhcCCCCcEEEE
Q 041509 128 LRAVQAGNKPNGAVVV 143 (211)
Q Consensus 128 l~~~~~~L~pgG~viv 143 (211)
.....+.+.+...+..
T Consensus 82 ~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 82 SSLLAKSYGINKTIAR 97 (132)
T ss_dssp HHHHHHHTTCCCEEEE
T ss_pred HHHHHHHcCCceEEEE
Confidence 3334445666544443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.83 E-value=0.0038 Score=47.27 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=71.6
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
..+|.+|+-| |.| .|..++..|.++ ++.|+.+|.+++.++..+..+. .+++....+...+.. .-...|+|+
T Consensus 29 gv~pa~V~Vi-GaGvaG~~A~~~A~~l---GA~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~l~~-~~~~aDivI 100 (168)
T d1pjca1 29 GVKPGKVVIL-GGGVVGTEAAKMAVGL---GAQVQIFDINVERLSYLETLFG---SRVELLYSNSAEIET-AVAEADLLI 100 (168)
T ss_dssp TBCCCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHG---GGSEEEECCHHHHHH-HHHTCSEEE
T ss_pred CCCCcEEEEE-CCChHHHHHHHHHhhC---CCEEEEEeCcHHHHHHHHHhhc---ccceeehhhhhhHHH-hhccCcEEE
Confidence 4578899999 877 488888888887 7899999999999887776654 346666666655433 245689998
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
-..-. +...=.-+...+.++| |.++| |-+...|
T Consensus 101 ~aalipG~~aP~lIt~~mv~~Mk~-GSVIV-DvaidqG 136 (168)
T d1pjca1 101 GAVLVPGRRAPILVPASLVEQMRT-GSVIV-DVAVDQG 136 (168)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCT-TCEEE-ETTCTTC
T ss_pred EeeecCCcccCeeecHHHHhhcCC-CcEEE-EeecCCC
Confidence 65421 1111134455667787 77776 8666554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.79 E-value=0.003 Score=46.93 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=66.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCCc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~f 112 (211)
+...+.++||-.++.|.|.+++.+++++. ..+|++++.+++..+.|++.=. ...|.... .+..+.+... .+.+
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G--~~~vi~~~~~~~k~~~ak~lGa--~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEFGA--TECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHHTC--SEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHh--cCceEEEcccHHHHHHHHHhCC--cEEEeCCchhhHHHHHHHHHcCCCC
Confidence 45677888888823577888888888873 4799999999999999987521 11111111 1233333322 4679
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+||-..... ..++.+..++++||.+++.-
T Consensus 100 D~vid~~G~~---~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 100 DYSFECIGNV---KVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred cEeeecCCCH---HHHHHHHHhhcCCceeEEEE
Confidence 9998655433 45677777788877766543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.73 E-value=0.0023 Score=47.78 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=64.2
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc---chHHHhhhc-cCCc
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG---DAQSLLLSH-FREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~l-~~~f 112 (211)
..+.+.||-+ |+ +.|.+++.++++.. ..+|+++|.+++..+.+++.-. + +++.. +..+.+... ...+
T Consensus 30 ~~~g~~vli~-GaG~vG~~~~~~a~~~g--~~~vv~~~~~~~k~~~~~~~ga---~--~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 30 LYPGAYVAIV-GVGGLGHIAVQLLKVMT--PATVIALDVKEEKLKLAERLGA---D--HVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CCTTCEEEEE-CCSHHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHHHTTC---S--EEEETTSCHHHHHHHHTTTCCE
T ss_pred cCCCCEEEEe-CCChHHHHHHHHHHhhc--CcccccccchhHHHHHHhhccc---c--eeecCcccHHHHHHHhhCCCCc
Confidence 3567888888 65 46677777777763 4689999999999999987532 1 12222 223333322 3469
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.||-..... ..++...+.|+++|.++++
T Consensus 102 d~vid~~g~~---~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 102 NVAMDFVGSQ---ATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEEESSCCH---HHHHHGGGGEEEEEEEEEC
T ss_pred eEEEEecCcc---hHHHHHHHHHhCCCEEEEE
Confidence 9888665543 4578888899999988764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0048 Score=45.78 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=64.3
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...+.++||-+ |+ +.|..++.+|++. +.+++.++.+++..+.|++.=. + .++..+-.+......+.+|.
T Consensus 26 ~~~~~G~~VlI~-GaG~vG~~a~qlak~~---Ga~~i~~~~~~~~~~~a~~lGa---d--~~i~~~~~~~~~~~~~~~D~ 96 (168)
T d1uufa2 26 WQAGPGKKVGVV-GIGGLGHMGIKLAHAM---GAHVVAFTTSEAKREAAKALGA---D--EVVNSRNADEMAAHLKSFDF 96 (168)
T ss_dssp TTCCTTCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHTC---S--EEEETTCHHHHHTTTTCEEE
T ss_pred hCCCCCCEEEEe-ccchHHHHHHHHhhcc---cccchhhccchhHHHHHhccCC---c--EEEECchhhHHHHhcCCCce
Confidence 566778899989 65 4688888888875 6688899999998888876421 2 12222222222223568999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|-..... ..++...+.++|+|.+++.
T Consensus 97 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 97 ILNTVAAP---HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEECCSSC---CCHHHHHTTEEEEEEEEEC
T ss_pred eeeeeecc---hhHHHHHHHHhcCCEEEEe
Confidence 88765543 2355667788888887764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.002 Score=48.27 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=65.7
Q ss_pred HhhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
++..+.++||-.+| +++|..++-+|... +.+++++..+++..+.+++. +...-+.....|..+.+.+. ...+
T Consensus 21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~---g~~vi~~~~~~~~~~~l~~~--Ga~~vi~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 21 GRLSPGERVLIHSATGGVGMAAVSIAKMI---GARIYTTAGSDAKREMLSRL--GVEYVGDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHTT--CCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred hCCCCCCEEEEECCCCCcccccchhhccc---cccceeeecccccccccccc--cccccccCCccCHHHHHHHHhCCCCE
Confidence 34456688998722 78888888898876 67899888888888887753 22211221223344444333 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+||-... . +.++.+.+.|+++|.++.+
T Consensus 96 d~v~d~~g-~---~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 96 DVVLNSLA-G---EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEECCC-T---HHHHHHHHTEEEEEEEEEC
T ss_pred EEEEeccc-c---hHHHHHHHHhcCCCEEEEE
Confidence 99984333 2 4677788889998887764
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.0066 Score=45.28 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=63.6
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
+...+.++||-. | .+.|..++.+|++. +.+|++++.+++..+.+++. | .+.+ +-..+..+.+.. .+.+|
T Consensus 23 ~~~~~g~~VlI~-ga~G~vG~~aiqlak~~---G~~vi~~~~~~~~~~~~~~l--G-a~~~-i~~~~~~~~~~~-~~g~D 93 (171)
T d1iz0a2 23 AQARPGEKVLVQ-AAAGALGTAAVQVARAM---GLRVLAAASRPEKLALPLAL--G-AEEA-ATYAEVPERAKA-WGGLD 93 (171)
T ss_dssp TTCCTTCEEEES-STTBHHHHHHHHHHHHT---TCEEEEEESSGGGSHHHHHT--T-CSEE-EEGGGHHHHHHH-TTSEE
T ss_pred hCCCCCCEEEEE-eccccchhhhhhhhccc---cccccccccccccccccccc--c-ccee-eehhhhhhhhhc-ccccc
Confidence 456678889988 5 56788888888875 67999999999988888753 2 1222 112232222222 56799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|| |+.-+ .++...+.|+|+|.++.+
T Consensus 94 ~v~-d~~G~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVL-EVRGK----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEE-ECSCT----THHHHHTTEEEEEEEEEC
T ss_pred ccc-cccch----hHHHHHHHHhcCCcEEEE
Confidence 876 54332 356677889998887764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.60 E-value=0.0025 Score=47.17 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=60.5
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
+|.=| |+ |..+..+|.++...+-+|+.+|++++.++.|++. +..+ -. .+-.+. -...|+||+..+..
T Consensus 2 kI~iI-G~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~--~~~~---~~-~~~~~~----~~~~DiIilavp~~ 68 (165)
T d2f1ka2 2 KIGVV-GL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER--QLVD---EA-GQDLSL----LQTAKIIFLCTPIQ 68 (165)
T ss_dssp EEEEE-CC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TSCS---EE-ESCGGG----GTTCSEEEECSCHH
T ss_pred EEEEE-ee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh--hccc---ee-eeeccc----ccccccccccCcHh
Confidence 45566 65 5666667777766678999999999988887653 2111 11 122222 35789999988877
Q ss_pred cHHHHHHHHHhcCCCCcEEEE
Q 041509 123 NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 123 ~y~~~l~~~~~~L~pgG~viv 143 (211)
...+.++++.+.+++ +.+++
T Consensus 69 ~~~~vl~~l~~~l~~-~~iv~ 88 (165)
T d2f1ka2 69 LILPTLEKLIPHLSP-TAIVT 88 (165)
T ss_dssp HHHHHHHHHGGGSCT-TCEEE
T ss_pred hhhhhhhhhhhhccc-cccee
Confidence 888999999999887 55554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.57 E-value=0.0056 Score=45.96 Aligned_cols=102 Identities=10% Similarity=0.000 Sum_probs=64.8
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc--hHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD--AQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd--a~e~l~~l-~~~ 111 (211)
+..++.+.||-+ |+ |.|.+++.++++.. ..+|+++|.+++.++.|++.=. ...|.....| ..+..... .+.
T Consensus 23 a~~~~G~~VlV~-GaGgvGl~a~~~ak~~G--~~~Vi~~d~~~~kl~~a~~lGa--~~~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 23 AKVTPGSTCAVF-GLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIELGA--TECLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp TCCCTTCEEEEE-CCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHTTC--SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEE-CCCchhHHHHHHHHHcC--CceeeccCChHHHHHHHHHcCC--cEEEcCCCchhHHHHHHHHhcCCC
Confidence 456778889999 65 46777777887763 4799999999999999987421 1222222233 23333222 568
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCC-CcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKP-NGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~p-gG~viv~d 145 (211)
+|.+|...... ..++.....+++ +|.++++-
T Consensus 98 ~d~vid~~g~~---~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 98 VDYAVECAGRI---ETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp BSEEEECSCCH---HHHHHHHHTBCTTTCEEEECC
T ss_pred CcEEEEcCCCc---hHHHHHHHHHHHhcCceEEEE
Confidence 99999776643 445555555544 47766643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.56 E-value=0.0065 Score=45.24 Aligned_cols=100 Identities=13% Similarity=0.032 Sum_probs=60.7
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cc-hHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GD-AQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gd-a~e~l~~l-~~~ 111 (211)
++.++.+.||-+ |+ |.|.+++.++.+. ...+|+++|.+++..+.|++.-. ...+.... .+ ..+.+... .+.
T Consensus 24 ~~vk~GdtVlV~-GaGG~G~~~~~~~~~~--g~~~Vi~~~~~~~k~~~a~~~Ga--~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 24 AKVTQGSTCAVF-GLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVGA--TECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TCCCTTCEEEEE-CCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTC--SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEE-CCCCcHHHHHHHHHHc--CCceEEeecCcHHHHHHHHHhCC--eeEEecCCchhHHHHHHHHHhcCC
Confidence 456677889999 55 5666666677665 25799999999999999987633 11111101 11 22222222 568
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+|++|-..... ..++.+...++++|++++
T Consensus 99 ~D~vid~~G~~---~~~~~a~~~~~~~~g~~~ 127 (176)
T d2jhfa2 99 VDFSFEVIGRL---DTMVTALSCCQEAYGVSV 127 (176)
T ss_dssp BSEEEECSCCH---HHHHHHHHHBCTTTCEEE
T ss_pred CCEEEecCCch---hHHHHHHHHHhcCCcceE
Confidence 99988665543 445555555666644444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.23 E-value=0.0064 Score=45.02 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=62.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CCCC----cEEEEEcchHHHhhhccCCcc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LDAS----HVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~~~----~V~~~~gda~e~l~~l~~~fD 113 (211)
++|-=| |+| ..+..+|..+...+-.|+.+|.+++..+..++.-. .... ....+..|..+.+ ...|
T Consensus 2 k~iaIi-GaG--~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD 74 (184)
T d1bg6a2 2 KTYAVL-GLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDAD 74 (184)
T ss_dssp CEEEEE-CCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCS
T ss_pred CEEEEE-Ccc--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCC
Confidence 456666 664 44455555554457899999999998888776532 1111 1222344555544 4689
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+||+-.+.......++++.+.|.++ .+++
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~-~~iv 103 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEG-QLII 103 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTT-CEEE
T ss_pred EEEEEEchhHHHHHHHHhhhccCCC-CEEE
Confidence 9999887778899999999999875 4555
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.22 E-value=0.012 Score=44.11 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=60.7
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch-HHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA-QSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda-~e~l~~l--~~~f 112 (211)
+..+.+.||=+ |+ |.|.+++.++++.. ..+|+++|.+++.++.|++.=. ...|.....|. .+.+..+ ...+
T Consensus 26 ~~~~g~tVlI~-G~GgvGl~ai~~ak~~G--~~~Vi~vd~~~~kl~~Ak~~GA--~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 26 KVKPGSTCVVF-GLGGVGLSVIMGCKSAG--ASRIIGIDLNKDKFEKAMAVGA--TECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp CCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHHTC--SEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCCCCCEEEEE-CCCchhHHHHHHHHHcC--CceEEEecCcHHHHHHHHhcCC--cEEECccccchHHHHHHHHhccccc
Confidence 35667789988 65 46777777777652 4799999999999999998743 11122122221 2222221 5689
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcC-CCCcEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGN-KPNGAVVV 143 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L-~pgG~viv 143 (211)
|.++...... ..++.....+ +++|.+++
T Consensus 101 d~vi~~~g~~---~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 101 GYTFEVIGHL---ETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp CEEEECSCCH---HHHHHHHTTSCTTTCEEEE
T ss_pred eEEEEeCCch---HHHHHHHHHhhcCCeEEEE
Confidence 9988776643 3344444444 44466665
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.19 E-value=0.0041 Score=46.77 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=66.4
Q ss_pred HHHHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH-Hhhhc-
Q 041509 33 SALAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-LLLSH- 108 (211)
Q Consensus 33 ~~l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e-~l~~l- 108 (211)
...++.++.++||-. | .|.|..++.||+.. +.+|+++..+++..+.+++.-. ..-|.....+..+ .+...
T Consensus 22 ~~~~~v~~G~~VlV~-ga~ggvG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~Ga--~~vi~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 22 LEVCGVKGGETVLVS-AAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKIAYLKQIGF--DAAFNYKTVNSLEEALKKAS 95 (182)
T ss_dssp HTTTCCCSSCEEEES-STTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHTTC--SEEEETTSCSCHHHHHHHHC
T ss_pred HHHhCCCCCCEEEEE-eCCCchhHHHHHHHHcc---CCEEEEeCCCHHHHHHHHhhhh--hhhcccccccHHHHHHHHhh
Confidence 334556678899987 4 34777777788775 6899999999998888776421 1112111222222 22222
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.+|+|| |+-- .+.++.+.+.|+|+|.++++-
T Consensus 96 ~~Gvd~v~-D~vG---~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 96 PDGYDCYF-DNVG---GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp TTCEEEEE-ESSC---HHHHHHHGGGEEEEEEEEECC
T ss_pred cCCCceeE-EecC---chhhhhhhhhccCCCeEEeec
Confidence 45799976 4332 257888899999998887753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.96 E-value=0.003 Score=49.33 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=39.5
Q ss_pred EEEEcchHHHhhhc-cCCccEEEEcCCcC-------------cH----HHHHHHHHhcCCCCcEEEEEe
Q 041509 95 EFVIGDAQSLLLSH-FREADFVLIDCNLE-------------NH----EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 95 ~~~~gda~e~l~~l-~~~fD~VfiD~~~~-------------~y----~~~l~~~~~~L~pgG~viv~d 145 (211)
++++||+.++|+.+ ++++|+|+.|.+-. +| .++++++.+.|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 58899999999987 67899999997521 12 346778899999988777643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.94 E-value=0.019 Score=42.33 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=59.7
Q ss_pred HhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-c-hHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-D-AQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-d-a~e~l~~l-~~~ 111 (211)
++.++.++||-+ |+|. |.+++.++... .+.+|+++|.+++.++.|++.=. ..-|..... + ..+..... .+.
T Consensus 24 a~~k~g~~VlI~-G~Gg~g~~~~~~~~~~--g~~~Vi~~~~~~~rl~~a~~~GA--d~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 24 AKVEPGSTCAVF-GLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVFGA--TDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TCCCTTCEEEEE-CCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTC--CEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEE-ecCCccchHHHHHHHH--hhchheeecchHHHHHHHHHcCC--cEEEcCCCcchhHHHHHHhhccCC
Confidence 456677889998 6665 55556566554 36799999999999999987411 111111111 1 12222211 468
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+|.++-..... ..++.+..+++++|.+++
T Consensus 99 ~d~vid~~G~~---~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 99 VDFSLECVGNV---GVMRNALESCLKGWGVSV 127 (175)
T ss_dssp BSEEEECSCCH---HHHHHHHHTBCTTTCEEE
T ss_pred cceeeeecCCH---HHHHHHHHHhhCCCccee
Confidence 99998666543 345555666556655554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.93 E-value=0.0079 Score=48.31 Aligned_cols=121 Identities=12% Similarity=-0.038 Sum_probs=72.8
Q ss_pred cCCChhHHHHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEE
Q 041509 22 KAKEPNEAEFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVI 98 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~ 98 (211)
..+++...+|....-+ ..+..+|+|+ |||.|..+-.++... ....|.++++=-...+ .......+ -+-+++..
T Consensus 46 ~~~SR~~~Kl~~~~~~~~~~~~~~vvDl-G~~pGgws~~~a~~~--~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~ 121 (257)
T d2p41a1 46 HAVSRGSAKLRWFVERNLVTPEGKVVDL-GCGRGGWSYYCGGLK--NVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQS 121 (257)
T ss_dssp CCSSTHHHHHHHHHHTTSSCCCEEEEEE-TCTTSHHHHHHHTST--TEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEEC
T ss_pred CCcchHHHHHHHHHHhcCccCCCeEEEe-cCCCChHHHHHHhhc--CCCceeEEEecCcccc-CCccccccccccccchh
Confidence 3566776666554422 3455579999 999999988887542 2456777776211100 00001111 23467776
Q ss_pred cchHHHhhhccCCccEEEEcCCcC---------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 99 GDAQSLLLSHFREADFVLIDCNLE---------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~~---------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
++-...++ .++.|.|+.|.... .-.+.++.+.+.|+|||.+++ =+|.+
T Consensus 122 ~~dv~~l~--~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv--KVl~p 178 (257)
T d2p41a1 122 GVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV--KVLNP 178 (257)
T ss_dssp SCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE--EESCC
T ss_pred hhhHHhcC--CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE--EECCC
Confidence 66544433 57899999996431 225677888888999887654 44544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.0046 Score=46.89 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=60.6
Q ss_pred CCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 39 NNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
.+.++||-. | .|.|..++-||+++ +.+|++.-.+++..+.+++.=. ..-|. ...+..+..... .+.+|+|
T Consensus 30 ~~g~~VLI~-gaaGGVG~~aiQlak~~---Ga~Viat~~s~~k~~~~~~lGa--~~vi~-~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 30 PERGPVLVT-GATGGVGSLAVSMLAKR---GYTVEASTGKAAEHDYLRVLGA--KEVLA-REDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp GGGCCEEES-STTSHHHHHHHHHHHHT---TCCEEEEESCTTCHHHHHHTTC--SEEEE-CC---------CCSCCEEEE
T ss_pred CCCCEEEEE-eccchHHHHHHHHHHHc---CCceEEecCchHHHHHHHhccc--ceeee-cchhHHHHHHHhhccCcCEE
Confidence 346779888 5 67777788888876 7899999999999988886422 11121 122222222222 5689976
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
| |.--. ..++...+.|+|+|.++++-.
T Consensus 103 i-d~vgg---~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 103 V-DPVGG---RTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp E-ECSTT---TTHHHHHHTEEEEEEEEECSC
T ss_pred E-EcCCc---hhHHHHHHHhCCCceEEEeec
Confidence 5 54333 346777888899998877543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.77 E-value=0.011 Score=44.69 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=57.1
Q ss_pred HhhCCCCeEEEE-cc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH---hh--
Q 041509 36 AAGNNAQLMVVA-CA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL---LL-- 106 (211)
Q Consensus 36 ~~~~~~~~VLEi-~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~---l~-- 106 (211)
+...+.+.||=+ +| .|+|..++.+|+++ +.+|+++-.+++..+...+.++ |....|..-..+..+. +.
T Consensus 24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~---Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL---NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHH---TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred hCCCCCCEEEEEeCCCchHHHHHHHHHhhc---CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHH
Confidence 344555666665 23 45788999999987 6788777555444444433333 3222222111122221 11
Q ss_pred --hccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 --SHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 --~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...+.+|+|| |+--. +.++.+.+.|+|+|.+++
T Consensus 101 ~~~~g~~vdvv~-D~vg~---~~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 101 IKQSGGEAKLAL-NCVGG---KSSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHTCCEEEEE-ESSCH---HHHHHHHHTSCTTCEEEE
T ss_pred HhhccCCceEEE-ECCCc---chhhhhhhhhcCCcEEEE
Confidence 1145789887 54322 456777889999998776
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.69 E-value=0.0043 Score=49.01 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=41.8
Q ss_pred cEEEEEcchHHHhhhc-cCCccEEEEcCCc----------CcH----HHHHHHHHhcCCCCcEEEEEe
Q 041509 93 HVEFVIGDAQSLLLSH-FREADFVLIDCNL----------ENH----EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l-~~~fD~VfiD~~~----------~~y----~~~l~~~~~~L~pgG~viv~d 145 (211)
+=.|++||+++.|+.+ ++++|+||.|.+- .+| .++++++.++|+|+|.+++.-
T Consensus 4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 4468899999999888 6799999999852 234 556777889999988887743
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.68 E-value=0.059 Score=39.29 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=65.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++|+=| |+| ..+..+|.++... ..+|+++|.+++..+.|++.-. +.....+..+. .....|+|++..
T Consensus 2 k~I~II-G~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----~~~~~~~~~~~---~~~~~dlIila~ 70 (171)
T d2g5ca2 2 QNVLIV-GVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAKV---EDFSPDFVMLSS 70 (171)
T ss_dssp CEEEEE-SCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCGGGG---GGTCCSEEEECS
T ss_pred CEEEEE-ccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----chhhhhhhhhh---hccccccccccC
Confidence 357778 874 5555566666432 3589999999999999887521 11122222221 135789999999
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+...+.++++.+.+.+++ +.+++ |..-.++
T Consensus 71 p~~~~~~vl~~l~~~~~~-~~ii~-d~~s~k~ 100 (171)
T d2g5ca2 71 PVRTFREIAKKLSYILSE-DATVT-DQGSVKG 100 (171)
T ss_dssp CHHHHHHHHHHHHHHSCT-TCEEE-ECCSCCT
T ss_pred Cchhhhhhhhhhhccccc-ccccc-ccccccH
Confidence 988899999999999887 55554 6544444
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.011 Score=44.55 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHhhCCC--CeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-
Q 041509 34 ALAAGNNA--QLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH- 108 (211)
Q Consensus 34 ~l~~~~~~--~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l- 108 (211)
...+.++. +.||-. | .|+|..++.+|+.+. ..+|+++..+++......+.+. ...-+.....+..+.+...
T Consensus 22 ~~~~~~~G~~etVLI~-gaaGgVG~~aiQlak~~G--a~~vi~~~~~~e~~~~l~~~~g-ad~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVS-GAAGACGSLAGQIGHLLG--CSRVVGICGTQEKCLFLTSELG-FDAAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp HHSCCCTTSCCEEEES-STTSTTGGGHHHHHHHTT--CSEEEEEESSHHHHHHHHHHSC-CSEEEETTSSCHHHHHHHHC
T ss_pred HHhCCCCCCCCEEEEE-CCCchhhHHHHHHHHHcC--CcceecccchHHHHhhhhhccc-ceEEeeccchhHHHHHHHHh
Confidence 33444444 678887 4 789999999998873 3468877777666554443332 2222333444556665544
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+.+|+|| |+--. +.++...+.|+|+|.++++
T Consensus 98 ~~GvDvv~-D~vGg---~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 98 PGGVDVYF-DNVGG---DISNTVISQMNENSHIILC 129 (187)
T ss_dssp TTCEEEEE-ESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred ccCceEEE-ecCCc---hhHHHHhhhccccccEEEe
Confidence 45799987 54432 5678889999999988764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.45 E-value=0.019 Score=43.81 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=66.6
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCC------CcEEEEEcch-------
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDA------SHVEFVIGDA------- 101 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~------~~V~~~~gda------- 101 (211)
...+|-+||-| |.| .|..++..|.++ +++|+.+|.+++..+..++... ... ...+--.|.+
T Consensus 25 g~V~pa~VvVi-GaGvaG~~Aa~~A~~l---GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~ 100 (183)
T d1l7da1 25 GTVPPARVLVF-GVGVAGLQAIATAKRL---GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEF 100 (183)
T ss_dssp EEECCCEEEEE-CCSHHHHHHHHHHHHT---TCEEEEECSCSTTHHHHHHTTCEECCC----------------------
T ss_pred CCcCCcEEEEE-cCcHHHHHHHHHHHHc---CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHH
Confidence 44678899999 887 578888888887 7899999999999999887654 211 0111111111
Q ss_pred ----HHHhhhccCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 102 ----QSLLLSHFREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ----~e~l~~l~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.+.+.+.-...|+|+-..-.+ ...=.-+...+.++| |.++| |-+...|
T Consensus 101 ~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~-GSVIV-DvaidqG 155 (183)
T d1l7da1 101 RKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKP-GSVII-DLAVEAG 155 (183)
T ss_dssp -CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCT-TCEEE-ETTGGGT
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCC-CcEEE-EEeecCC
Confidence 112222235789998764221 111134556677888 77776 7666544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=95.35 E-value=0.012 Score=50.09 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=42.5
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
..+...++|+ |+..|.++.+++...+...++|+++|++|...+..++|++
T Consensus 210 l~kn~vfIDV-GAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 210 FSDSEKMVDC-GASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp CCSSCEEEEE-TCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEC-CcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4456789999 9999999999887775445799999999999999988865
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.32 E-value=0.0077 Score=48.17 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=41.8
Q ss_pred CcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-------------cH----HHHHHHHHhcCCCCcEEEEE
Q 041509 92 SHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-------------NH----EGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 92 ~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-------------~y----~~~l~~~~~~L~pgG~viv~ 144 (211)
+.-++++||+++.|..+ ++++|+|++|.+-. +| .+.++++.++|+|+|.+++.
T Consensus 11 ~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 11 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 45689999999999887 67999999997421 22 45678888899999988764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.25 E-value=0.019 Score=45.80 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=37.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
..+...|||.+ +|+|.+ +..|..+ +-+.+++|++++..+.|++.+.
T Consensus 248 s~~gdiVlDpF-~GSGTT-~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 248 TEPDDLVVDIF-GGSNTT-GLVAERE---SRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp CCTTCEEEETT-CTTCHH-HHHHHHT---TCEEEEEESCHHHHHHHHGGGS
T ss_pred ccCCCEEEecC-CCCcHH-HHHHHHc---CCcEEEEeCCHHHHHHHHHHHH
Confidence 35778999996 899965 4445444 6789999999999999999887
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.012 Score=42.71 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=62.2
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
+|+=+ |+| ..+..+|..+.+.+-.|+.++.+++..+..+..-.........+..+..+. .+.+|+||+-....
T Consensus 2 kI~Ii-GaG--~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~iii~vka~ 74 (167)
T d1ks9a2 2 KITVL-GCG--ALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDF----LATSDLLLVTLKAW 74 (167)
T ss_dssp EEEEE-CCS--HHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHH----HHTCSEEEECSCGG
T ss_pred EEEEE-CcC--HHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhh----hcccceEEEeeccc
Confidence 57778 774 444445544444467899999988633211100001112222333333333 24699999988877
Q ss_pred cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 123 NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 123 ~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+..+.++.+.+.+.++..++.+-|-+..
T Consensus 75 ~~~~~~~~l~~~~~~~~~Iv~~qNG~~~ 102 (167)
T d1ks9a2 75 QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (167)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred chHHHHHhhccccCcccEEeeccCcccH
Confidence 8899999999999887777777776643
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=94.64 E-value=0.067 Score=43.09 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=78.6
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
..+....++..+-.. ++..-+.. ..|+-.. ++..+++ .-+++.+|..|+-.+.-++++.+ ..++++...|+.+
T Consensus 67 ~p~~~~~yl~~v~~~-n~~~~l~~-YPGSP~i---a~~llR~-~Drl~l~ELHp~e~~~L~~~~~~-~~~~~v~~~DG~~ 139 (271)
T d2oo3a1 67 LPSLFLEYISVIKQI-NLNSTLSY-YPGSPYF---AINQLRS-QDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVS 139 (271)
T ss_dssp SCGGGHHHHHHHHHH-SSSSSCCE-EECHHHH---HHHHSCT-TSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHH
T ss_pred hhhhHHHHHHHHHHh-CCCCCcCc-CCCCHHH---HHHhCCC-CCceEEeecCHHHHHHHHHHhcc-CCCceEEcCchHH
Confidence 334445555544433 33333456 5766543 3344443 78999999999999988888774 4689999999998
Q ss_pred Hhhhc---cCCccEEEEcCCc---CcHHHHHHHHHhcCC--CCcEEEEEecCCC
Q 041509 104 LLLSH---FREADFVLIDCNL---ENHEGVLRAVQAGNK--PNGAVVVGYNAFR 149 (211)
Q Consensus 104 ~l~~l---~~~fD~VfiD~~~---~~y~~~l~~~~~~L~--pgG~viv~dn~~~ 149 (211)
.+..+ .++=-+|+||..- .+|.+..+.+...++ |.|+++|=.-++.
T Consensus 140 ~l~allPP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~ 193 (271)
T d2oo3a1 140 KLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 193 (271)
T ss_dssp HHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred HHHhhCCCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccC
Confidence 87654 3455799999864 478776666654432 5687777555444
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.63 E-value=0.12 Score=41.34 Aligned_cols=96 Identities=16% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+-+|||+| ||.|-+++.|-.+- --.+.++|.++.+.+..+.|+... .++|..++-......+|+++-..
T Consensus 10 ~~lrv~~lF-sG~Gg~~~gl~~aG---~~~v~a~e~d~~a~~~~~~N~~~~------~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLF-AGLGGFRLALESCG---AECVYSNEWDKYAQEVYEMNFGEK------PEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEET-CTTTHHHHHHHHTT---CEEEEEECCCHHHHHHHHHHHSCC------CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEEC-ccccHHHHHHHHCC---CeEEEEEeCCHHHHHHHHHHCCCC------CcCchhcCchhhcceeeeeeccc
Confidence 456899995 88998777765431 235688999999999999998621 24787776544346789998652
Q ss_pred C----------------cC-cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 120 N----------------LE-NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 120 ~----------------~~-~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+ +. .+.++++.+. .++| . +++.+|+-
T Consensus 80 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~-~~kP-~-~~~lENV~ 122 (327)
T d2c7pa1 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVR-EKKP-K-VVFMENVK 122 (327)
T ss_dssp CCTTTCTTSCCCGGGSTTSCHHHHHHHHHH-HHCC-S-EEEEEEEG
T ss_pred ccchhhhhhhhcCCcccchhHHHHHHHHHh-ccCC-c-EEecccch
Confidence 1 11 2355555543 4678 3 55669874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.39 E-value=0.045 Score=42.19 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
.+...|||-+ +|+|.++ ..|..+ +-+-+++|++++..+.|++++.
T Consensus 211 ~~gd~VlDpF-~GSGTT~-~aa~~~---~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCF-MGSGTTA-IVAKKL---GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESS-CTTCHHH-HHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECC-CCchHHH-HHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence 5678899996 9999654 444444 6789999999999999998864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.29 E-value=0.034 Score=39.07 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCcCcHHH-
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNLENHEG- 126 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~~~y~~- 126 (211)
|.|-.+..+++.+...+-.|+.||.|++.++.++.. ....+.||+.+ .+... -...|.+++..+...-..
T Consensus 7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------CSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------CCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 456777888888776678999999999988877432 13567788754 33332 346898888765443322
Q ss_pred HHHHHHhcCCCCcEEEE
Q 041509 127 VLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 127 ~l~~~~~~L~pgG~viv 143 (211)
....+.+.+ |...+++
T Consensus 81 ~~~~~~~~~-~~~~iia 96 (134)
T d2hmva1 81 LTTLLLKEL-DIPNIWV 96 (134)
T ss_dssp HHHHHHHHT-TCSEEEE
T ss_pred HHHHHHHHc-CCCcEEe
Confidence 333334433 4455544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.26 E-value=0.088 Score=41.76 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=50.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+|||++ ||+|-+++.|-.+- --.+.++|+|+...+..+.|+.. +++.+|..++-.......|+++..
T Consensus 2 k~~~lF-~G~Gg~~~gl~~aG---~~~~~a~e~d~~a~~~~~~N~~~-----~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLF-SGAGGLDLGFQKAG---FRIICANEYDKSIWKTYESNHSA-----KLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp EEEEES-CSSCHHHHHHHHHT---CEEEEEEECCHHHHHHHHHHCCS-----EEEESCTTTSCGGGSCCCSEEEEC
T ss_pred eEEEeC-cCcCHHHHHHHHCC---CEEEEEEeCCHHHHHHHHHHCCC-----CCccCChhhCCHhHcccccEEeec
Confidence 699995 88888887776552 23567999999999998888652 457789887754435678999875
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.082 Score=37.99 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=58.4
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
.+|+=+ |. |-.+..+++.+...+-.++.||.+|+......+... ...+.++.||+.+ .|.+. -+..|.+++.
T Consensus 4 nHiII~-G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 4 DHFIVC-GH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp SCEEEE-CC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CEEEEE-CC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh--cCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 356655 55 566677777776667889999999976443333222 2458899999864 34433 4578999987
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+.....-..-...+.+.|.-.+++
T Consensus 79 ~~~d~~n~~~~~~~r~~~~~~~iia 103 (153)
T d1id1a_ 79 SDNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp SSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred cccHHHHHHHHHHHHHhCCCCceEE
Confidence 6544332222233334455444444
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=93.90 E-value=0.015 Score=46.50 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHHHhh---CCCCeEEEEccccHHHHHHHHHHHccC--------------------------------------CC
Q 041509 29 AEFISALAAG---NNAQLMVVACANVANATTLALAAAAHQ--------------------------------------TG 67 (211)
Q Consensus 29 ~~lL~~l~~~---~~~~~VLEi~Gtg~G~stl~la~a~~~--------------------------------------~~ 67 (211)
.++|...... ..+..++|-| ||+|...+..|..+.. ..
T Consensus 36 a~il~~al~l~~w~~~~~LlDPm-CGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~ 114 (249)
T d1o9ga_ 36 TEIFQRALARLPGDGPVTLWDPC-CGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 114 (249)
T ss_dssp HHHHHHHHHTSSCCSCEEEEETT-CTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCCCCceeccc-cCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccccc
Confidence 3455544222 2344589997 9999988776653211 01
Q ss_pred cEEEEEeCChhHHHHH---HHHhc--CCCCcEEEEEcchHHHhhh----ccCCccEEEEcCCc------------CcHHH
Q 041509 68 GRVVCILRRVEEYKLS---KKILG--LDASHVEFVIGDAQSLLLS----HFREADFVLIDCNL------------ENHEG 126 (211)
Q Consensus 68 g~v~tiE~~~~~~~~A---r~~~~--~~~~~V~~~~gda~e~l~~----l~~~fD~VfiD~~~------------~~y~~ 126 (211)
.++++.|.|+++++.| ++|+. ++.+.|++...|+.+..+. ....+++|+.+.+- +.|.+
T Consensus 115 ~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~ 194 (249)
T d1o9ga_ 115 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 194 (249)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred CCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHH
Confidence 3568899999998888 46776 7889999999998654321 14678999998531 13566
Q ss_pred HHHHHHhcCCCCcEEEEEec
Q 041509 127 VLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 127 ~l~~~~~~L~pgG~viv~dn 146 (211)
....+.+.+...-.++++++
T Consensus 195 ~~~~l~~~~p~~s~~~it~~ 214 (249)
T d1o9ga_ 195 LLRSLASALPAHAVIAVTDR 214 (249)
T ss_dssp HHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHccCCCCcEEEEeCc
Confidence 66677777754444555554
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.78 E-value=0.03 Score=41.71 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=60.7
Q ss_pred CCeEEEE-ccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc-h-HHHhhhc-cCCccEEE
Q 041509 41 AQLMVVA-CANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD-A-QSLLLSH-FREADFVL 116 (211)
Q Consensus 41 ~~~VLEi-~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd-a-~e~l~~l-~~~fD~Vf 116 (211)
.+.||-- +..|.|..++-||+++ +.+|+++-.+++..+.+++.= .+.+ +..+ . .+.+... .+.+|.|+
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~---Ga~Viat~~s~~k~~~~~~lG---ad~v--i~~~~~~~~~~~~~~~~gvd~vi 95 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKR---GYDVVASTGNREAADYLKQLG---ASEV--ISREDVYDGTLKALSKQQWQGAV 95 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHH---TCCEEEEESSSSTHHHHHHHT---CSEE--EEHHHHCSSCCCSSCCCCEEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc---CCceEEEecCHHHHHHHHhhc---ccce--EeccchhchhhhcccCCCceEEE
Confidence 4468876 1267888899999987 689999999999888887642 2222 2211 1 1111111 45799876
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-.-. . +.++...+.|+|+|.++++-
T Consensus 96 d~vg-g---~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 96 DPVG-G---KQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp ESCC-T---HHHHHHHTTEEEEEEEEECC
T ss_pred ecCc-H---HHHHHHHHHhccCceEEEee
Confidence 4333 3 56778888999988877643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.74 E-value=0.069 Score=41.59 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=37.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
..+...|||-+ +|+|.+++ .|..+ +-+.+++|++|+..+.|++++.
T Consensus 205 s~~gdiVLDpF-~GSGTT~~-Aa~~l---gR~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 205 SHPGSTVLDFF-AGSGVTAR-VAIQE---GRNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp SCTTCEEEETT-CTTCHHHH-HHHHH---TCEEEEEESSTHHHHHHHHHHH
T ss_pred cCCCCEEEecC-CCCcHHHH-HHHHh---CCeEEEEeCCHHHHHHHHHHHH
Confidence 35788999996 99997544 44444 5699999999999999999987
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.097 Score=39.10 Aligned_cols=93 Identities=20% Similarity=0.060 Sum_probs=62.3
Q ss_pred CCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 41 AQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.+.||-. | .|.|..++-||+++ +.+|+++-.+++..+.+++.=. -.++.-+-.+....+ ...+|.+ +
T Consensus 32 ~~~vlV~-gasGGVG~~aiQlAk~~---Ga~Via~~~~~~k~~~~~~lGa-----d~vi~~~~~~~~~~l~~~~~~~v-v 101 (177)
T d1o89a2 32 DGEIVVT-GASGGVGSTAVALLHKL---GYQVVAVSGRESTHEYLKSLGA-----SRVLPRDEFAESRPLEKQVWAGA-I 101 (177)
T ss_dssp GCEEEES-STTSHHHHHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTE-----EEEEEGGGSSSCCSSCCCCEEEE-E
T ss_pred CCcEEEE-EccccchHHHHHHHHHc---CCCeEEEecchhHHHHHHhhcc-----ccccccccHHHHHHHHhhcCCee-E
Confidence 3478776 3 56888899999986 7899999999999888875421 122222222221222 3567876 5
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|.--. +.++...+.|+++|.++++-+
T Consensus 102 D~Vgg---~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 102 DTVGD---KVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ESSCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred EEcch---HHHHHHHHHhccccceEeecc
Confidence 76543 568888899999998887544
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.25 Score=38.69 Aligned_cols=79 Identities=18% Similarity=0.054 Sum_probs=57.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH------hh---h
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL------LL---S 107 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~------l~---~ 107 (211)
.+.|.+|-. |++.|. +..+|+.+...+.+|+.++.+++.++.+.+.++ +...++.++..|..+- +. +
T Consensus 8 lk~Kv~lIT-Gas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 8 WRDRLALVT-GASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GTTCEEEEE-STTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 467889999 776664 456666666668999999999998888777766 4456888888886432 11 1
Q ss_pred ccCCccEEEEcC
Q 041509 108 HFREADFVLIDC 119 (211)
Q Consensus 108 l~~~fD~VfiD~ 119 (211)
..+++|.++..+
T Consensus 86 ~~g~iD~lVnnA 97 (257)
T d1xg5a_ 86 QHSGVDICINNA 97 (257)
T ss_dssp HHCCCSEEEECC
T ss_pred hcCCCCEEEecc
Confidence 157899998875
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.13 Score=41.08 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=48.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~Vfi 117 (211)
|-+|+|+| ||+|-.++.|-.+- - ..+ |.++|+++.+.+..+.|+.. ..++++|..++.... ...+|+++-
T Consensus 2 p~kv~~lF-~G~Gg~~~gl~~aG-~-~~~~~~a~E~~~~a~~~~~~n~~~----~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELY-SGVGGMHHALRESC-I-PAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEET-CTTCHHHHHHHHHT-C-SEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcC-cCccHHHHHHHHcC-C-CCeEEEEEECCHHHHHHHHHHCCC----CCcccCchhhCCHhHcCCCCccEEEe
Confidence 56799995 88888776665441 1 223 68999999999999988652 345667776654321 237899986
Q ss_pred c
Q 041509 118 D 118 (211)
Q Consensus 118 D 118 (211)
.
T Consensus 75 g 75 (343)
T d1g55a_ 75 S 75 (343)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.33 E-value=0.71 Score=35.73 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hh---hccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LL---SHFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~---~l~~ 110 (211)
+.|.+|-. |.+.| .+..+|+.+...+.+|+.++.+++.++.+.+.++....++.++..|..+. .. +..+
T Consensus 9 enKvalIT-Gas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVT-GAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEE-STTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEe-CCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45778888 76655 35667777766688999999999998888887774445788899986542 11 1157
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.++..+
T Consensus 87 ~iDilvnna 95 (251)
T d2c07a1 87 NVDILVNNA 95 (251)
T ss_dssp CCCEEEECC
T ss_pred Cceeeeecc
Confidence 999998765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.89 E-value=0.53 Score=36.63 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---cc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~ 109 (211)
.+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.++....++..+..|..+. +.. ..
T Consensus 3 L~gK~alIT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 3 FNGKVCLVT-GAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 367888988 765554 3555555555689999999999999888888774445788888885432 111 14
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
++.|.++..+
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 7899998764
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.86 E-value=0.29 Score=33.92 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH--HHhhhc-cCCccEEEEcCCcCcHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ--SLLLSH-FREADFVLIDCNLENHEGV 127 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~--e~l~~l-~~~fD~VfiD~~~~~y~~~ 127 (211)
|.|-.+..+++.+. +-.++.||.+++..+.++. ..+.++.||+. +.|.+. -++.+.+++..+.....-.
T Consensus 7 G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~ 78 (129)
T d2fy8a1 7 GWSESTLECLRELR--GSEVFVLAEDENVRKKVLR------SGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH 78 (129)
T ss_dssp SCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHH------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred CCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHh------cCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence 45677888998885 4568889999998876653 24788999985 445443 4578899887765444333
Q ss_pred HHHHHhcCCCCcEEEE
Q 041509 128 LRAVQAGNKPNGAVVV 143 (211)
Q Consensus 128 l~~~~~~L~pgG~viv 143 (211)
.-...+.+.|...+++
T Consensus 79 ~~~~~r~~~~~~~iia 94 (129)
T d2fy8a1 79 CILGIRKIDESVRIIA 94 (129)
T ss_dssp HHHHHHHHCSSSCEEE
T ss_pred HHHHHHHHCCCceEEE
Confidence 4444445667655554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.46 Score=36.85 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=56.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH------hhh---c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL------LLS---H 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~------l~~---l 108 (211)
++|.+|-. |.+.|. +..+|+.+.+.+.+|+.++.+++.++.+.+.+. ....++.++..|..+. +.. .
T Consensus 2 ~GKvalIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVT-GAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 56888988 766554 455666655568999999999998888777775 2346789999986442 111 1
Q ss_pred cCCccEEEEcCC
Q 041509 109 FREADFVLIDCN 120 (211)
Q Consensus 109 ~~~fD~VfiD~~ 120 (211)
.+++|.++-.+.
T Consensus 80 ~G~iDilVnnAg 91 (254)
T d2gdza1 80 FGRLDILVNNAG 91 (254)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCcCeeccccc
Confidence 478999988764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.56 E-value=0.27 Score=36.98 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-------------CCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-------------ASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-------------~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
|.||.++.+|..+...+-+|+++|.|++.++..++..... ...--....|..+.+. ..|++|+
T Consensus 7 GlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~----~~d~i~i 82 (202)
T d1mv8a2 7 GLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL----DSDVSFI 82 (202)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH----TCSEEEE
T ss_pred CCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh----hCCEEEE
Confidence 4567767666666555789999999998877654332110 0011122333333332 4688887
Q ss_pred cCCcC----------cHHHHHHHHHh---cCCCCcEEEEEecCCCCC
Q 041509 118 DCNLE----------NHEGVLRAVQA---GNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 D~~~~----------~y~~~l~~~~~---~L~pgG~viv~dn~~~~~ 151 (211)
.-+.+ ......+.+.. .+.+ +.+++......+|
T Consensus 83 ~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~-~~liii~STv~pG 128 (202)
T d1mv8a2 83 CVGTPSKKNGDLDLGYIETVCREIGFAIREKSE-RHTVVVRSTVLPG 128 (202)
T ss_dssp CCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCS-CCEEEECSCCCTT
T ss_pred ecCccccccccccchhhhhhhhhhhheeecccC-CcceeeccccCCc
Confidence 64321 12344444433 3445 5566667777776
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.18 E-value=0.44 Score=33.83 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=50.7
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch--HHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA--QSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda--~e~l~~l~~~fD~VfiD 118 (211)
.|+||=+ |+ |..+..+|..+...+-.|+-+|.+++.++...+++. .......+. ...+.......|.++..
T Consensus 2 ~K~Ilii-Ga--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 TKSVLML-GS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ----HSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp CCEEEEE-CC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCT----TEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCEEEEE-CC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhccc----ccccccccccchhhhHhhhhccceeEee
Confidence 4788889 87 666677777777767799999999987776655433 122222222 22222223567777765
Q ss_pred CCcCcHHHHHHHHH
Q 041509 119 CNLENHEGVLRAVQ 132 (211)
Q Consensus 119 ~~~~~y~~~l~~~~ 132 (211)
.+..........+.
T Consensus 75 ~~~~~~~~~~~~~~ 88 (182)
T d1e5qa1 75 IPYTFHATVIKSAI 88 (182)
T ss_dssp SCGGGHHHHHHHHH
T ss_pred ccchhhhHHHHHHH
Confidence 55444444444443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.05 E-value=0.67 Score=36.04 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=55.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------h----hhcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------L----LSHF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l----~~l~ 109 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+.....++.++..|..+. + .+..
T Consensus 7 ~GK~alIT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVT-GGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEE-SCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 57888988 766554 3555655555588999999999998888777763346788888886431 1 1113
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
++.|+++..+
T Consensus 85 ~~idilvnnA 94 (259)
T d2ae2a_ 85 GKLNILVNNA 94 (259)
T ss_dssp TCCCEEEECC
T ss_pred CCceEEEECC
Confidence 4799998775
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.99 E-value=0.53 Score=36.73 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=55.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hh----hcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LL----SHF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~----~l~ 109 (211)
+.|++|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+.....++..+..|..+. +. .+.
T Consensus 7 kgK~alVT-Gas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVT-GGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEET-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 56888888 766664 4555655555589999999999988888777763345788888886431 11 113
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
+++|+++..+
T Consensus 85 g~idilvnnA 94 (259)
T d1xq1a_ 85 GKLDILINNL 94 (259)
T ss_dssp TCCSEEEEEC
T ss_pred CCcccccccc
Confidence 6899999875
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=90.75 E-value=0.9 Score=30.88 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=47.5
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHh
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQA 133 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~ 133 (211)
|.+|.-||-++...+..++.++...-.+.....++.+.+..+ ..+||+|++|-.-+ +-.+.++++.+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~ 70 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMK 70 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHHH
Confidence 357899999999999999988822223444557777776544 46899999998765 33556666654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.74 E-value=0.65 Score=36.09 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=55.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hh---hccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LL---SHFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~---~l~~ 110 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.++....++.++..|..+. .. +..+
T Consensus 10 ~gK~alIT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIIT-GAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEET-TTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56888888 765553 4556666666689999999999998888877773345788888886432 11 1147
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|+++..+
T Consensus 88 ~iDilvnnA 96 (255)
T d1fmca_ 88 KVDILVNNA 96 (255)
T ss_dssp SCCEEEECC
T ss_pred CCCEeeeCC
Confidence 899998764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.48 Score=37.00 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCeE-EEEccccHHHHHHHHHHHccC-CCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH---------hhhcc
Q 041509 41 AQLM-VVACANVANATTLALAAAAHQ-TGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL---------LLSHF 109 (211)
Q Consensus 41 ~~~V-LEi~Gtg~G~stl~la~a~~~-~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~---------l~~l~ 109 (211)
+++| |-. |++.|. +..+|+.+.. .+.+|+..+.+++.++.+.+.++....+++++..|..+. +.+..
T Consensus 2 g~rVAlVT-Gas~GI-G~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVT-GGNKGI-GLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEES-SCSSHH-HHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEC-CCCCHH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 3566 444 654443 2344443322 367999999999999988888873235688888886442 11114
Q ss_pred CCccEEEEcCCcC-----------cH-----------HHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLE-----------NH-----------EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~-----------~y-----------~~~l~~~~~~L~pgG~viv~d 145 (211)
+++|+++.++... ++ ....+.+.+.|+++|.++...
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 7899999886321 11 234556677788888776543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.36 E-value=0.89 Score=35.31 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=54.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH------hhh---c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL------LLS---H 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~------l~~---l 108 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. +...++..+..|..+. +.. .
T Consensus 3 ~gK~alIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLIT-GGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 56788888 766554 344555554558999999999998887777665 4456788888885432 111 1
Q ss_pred cCCccEEEEcC
Q 041509 109 FREADFVLIDC 119 (211)
Q Consensus 109 ~~~fD~VfiD~ 119 (211)
.+++|+++-.+
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 47899998764
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.26 E-value=0.48 Score=37.68 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeC----ChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhh--ccCC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILR----RVEEYKLSKKILG-LDASHVEFVIGDAQSLLLS--HFRE 111 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~----~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~--l~~~ 111 (211)
.++++||-+ | |+|+.+-+|++.+.+.+-+|+++|. +.......+.... ....+++++.+|..+.... ....
T Consensus 14 ~~~k~iLVT-G-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~ 91 (341)
T d1sb8a_ 14 AQPKVWLIT-G-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG 91 (341)
T ss_dssp HSCCEEEEE-T-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred CCCCEEEEe-c-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccc
Confidence 477999999 4 6999999999988776789999985 2333333433333 2235799999999775431 2456
Q ss_pred ccEEEEcCC
Q 041509 112 ADFVLIDCN 120 (211)
Q Consensus 112 fD~VfiD~~ 120 (211)
.|.|+..+.
T Consensus 92 ~~~v~~~~a 100 (341)
T d1sb8a_ 92 VDYVLHQAA 100 (341)
T ss_dssp CSEEEECCS
T ss_pred ccccccccc
Confidence 677765543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.20 E-value=0.61 Score=36.58 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHH------hhh---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSL------LLS--- 107 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~------l~~--- 107 (211)
+.|++|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. +. ..++..+..|..+. ...
T Consensus 3 ~gK~alIT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIIT-GSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEET-TCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 56788888 766664 455555555558899999999998888887776 32 45799999985432 111
Q ss_pred ccCCccEEEEcC
Q 041509 108 HFREADFVLIDC 119 (211)
Q Consensus 108 l~~~fD~VfiD~ 119 (211)
..+++|.++..+
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 147899999764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.02 E-value=0.97 Score=35.06 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH----------hhhcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL----------LLSHF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~----------l~~l~ 109 (211)
+.|++|-. |+..|. +..+|..+...+.+|+.++.+++.++.+.+.++....++.++..|..+. .....
T Consensus 5 ~gK~alIT-Gas~GI-G~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVT-GGSKGI-GYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEE-SCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 57889999 766553 4555555545588999999999988888777773346688888886432 11223
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
+..|+++..+
T Consensus 83 g~idilinna 92 (258)
T d1ae1a_ 83 GKLNILVNNA 92 (258)
T ss_dssp SCCCEEEECC
T ss_pred CCcEEEeccc
Confidence 6788887654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.01 E-value=0.79 Score=33.80 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.|+||-. |.+.| .+..+++.+...+.+|+.++.+++..+.+.+.+. ........-..|..+. .+..+..|++|
T Consensus 21 l~gK~vlIt-GasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~iDili 97 (191)
T d1luaa1 21 VKGKKAVVL-AGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR-AEAVKGAHFVF 97 (191)
T ss_dssp CTTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHH-HHHTTTCSEEE
T ss_pred CCCCEEEEE-CCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHH-HHHhcCcCeee
Confidence 477899999 74433 3345555554558999999999999888877776 2112233333444443 43467899998
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
-.+.
T Consensus 98 n~Ag 101 (191)
T d1luaa1 98 TAGA 101 (191)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 7754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.60 E-value=1.1 Score=34.57 Aligned_cols=79 Identities=5% Similarity=-0.016 Sum_probs=56.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hh---hccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LL---SHFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~---~l~~ 110 (211)
.++.+|-. |++.|. +..+|..+.+.+.+|+.++.+++.++...+.+.....++..+..|..+. +. ...+
T Consensus 6 ~Gkv~lIT-Gas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLIT-GAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEe-CCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 56888888 776664 3555555555689999999999998888877773345788888886543 11 1157
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
..|+++..+.
T Consensus 84 ~idilinnag 93 (244)
T d1yb1a_ 84 DVSILVNNAG 93 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCceeEeecc
Confidence 8999998753
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.47 E-value=1.3 Score=34.43 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=55.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hh-------hcc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LL-------SHF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~-------~l~ 109 (211)
.+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+.. ..++.++..|..+. +. +..
T Consensus 4 L~gKvalIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 4 LQDKVAIIT-GGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTCEEEEE-STTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356889999 776664 4556666655588999999999988888777763 34688888886432 11 114
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
+++|.++..+
T Consensus 81 g~iD~lVnnA 90 (268)
T d2bgka1 81 GKLDIMFGNV 90 (268)
T ss_dssp SCCCEEEECC
T ss_pred CCcceecccc
Confidence 7899999764
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.35 E-value=2.8 Score=30.21 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=55.9
Q ss_pred eEEEEccccH-HHHHHHHHHHccCCCcEEEEE-eCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVA-NATTLALAAAAHQTGGRVVCI-LRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~-G~stl~la~a~~~~~g~v~ti-E~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+|.=| |||. |..=+...... ++.+|++| |.+++.++...+.+. .....+ +..|..+++. +..+|+|++..+
T Consensus 3 ki~iI-G~G~~g~~~~~~l~~~--~~~~i~ai~d~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ll~--~~~iD~v~I~tp 75 (184)
T d1ydwa1 3 RIGVM-GCADIARKVSRAIHLA--PNATISGVASRSLEKAKAFATANN-YPESTK-IHGSYESLLE--DPEIDALYVPLP 75 (184)
T ss_dssp EEEEE-SCCTTHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHTT-CCTTCE-EESSHHHHHH--CTTCCEEEECCC
T ss_pred EEEEE-cCCHHHHHHHHHHHhC--CCCEEEEEEeCCccccccchhccc-ccccee-ecCcHHHhhh--ccccceeeeccc
Confidence 46668 8873 43212122222 36788876 888887665544443 222222 4678888776 467999999888
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.....++...+.+ .|.=++++-.+
T Consensus 76 ~~~h~~~~~~~l~----~g~~v~~EKP~ 99 (184)
T d1ydwa1 76 TSLHVEWAIKAAE----KGKHILLEKPV 99 (184)
T ss_dssp GGGHHHHHHHHHT----TTCEEEECSSC
T ss_pred chhhcchhhhhhh----ccceeeccccc
Confidence 7766666655554 34445556444
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.34 E-value=0.74 Score=35.97 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHH------hhh---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSL------LLS--- 107 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~------l~~--- 107 (211)
+.|++|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. +. ..++..+..|..+. +..
T Consensus 4 ~gK~alVT-Gas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIIT-GSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEET-TCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 56788888 766554 345555555558899999999999888888776 32 35799999985432 111
Q ss_pred ccCCccEEEEcC
Q 041509 108 HFREADFVLIDC 119 (211)
Q Consensus 108 l~~~fD~VfiD~ 119 (211)
..+++|+++..+
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 147899999764
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.96 E-value=1.1 Score=34.43 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFRE 111 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~~ 111 (211)
.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.++....++.++..|..+. ... ..++
T Consensus 2 gKValIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVT-GATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEE-SCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3556777 765554 4556666655688999999999998888877773345788899886432 111 1578
Q ss_pred ccEEEEcC
Q 041509 112 ADFVLIDC 119 (211)
Q Consensus 112 fD~VfiD~ 119 (211)
.|.++..+
T Consensus 80 iDilVnnA 87 (257)
T d2rhca1 80 VDVLVNNA 87 (257)
T ss_dssp CSEEEECC
T ss_pred CCEEEecc
Confidence 99998765
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=88.88 E-value=0.41 Score=32.89 Aligned_cols=49 Identities=6% Similarity=0.024 Sum_probs=38.1
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeC--------ChhHHHHHHHHhc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILR--------RVEEYKLSKKILG 88 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~--------~~~~~~~Ar~~~~ 88 (211)
....|++|+=+ |. |+.++.+|..+...+.+|+-+|. ++++.+.+++.++
T Consensus 18 ~l~~p~~v~Ii-Gg--G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~ 74 (117)
T d1onfa2 18 NIKESKKIGIV-GS--GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 74 (117)
T ss_dssp TCCCCSEEEEE-CC--SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEE-CC--chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence 44568999999 65 56778888888777889999997 5666777777775
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=88.77 E-value=0.87 Score=32.04 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=50.4
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
-++|.=| | |.|..+.+||+.+...+-.|+.+|.++...... .....|++++..+
T Consensus 9 ~~kI~iI-G-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~------------------------~~~~~~~v~~~~~ 62 (152)
T d2pv7a2 9 IHKIVIV-G-GYGKLGGLFARYLRASGYPISILDREDWAVAES------------------------ILANADVVIVSVP 62 (152)
T ss_dssp CCCEEEE-T-TTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH------------------------HHTTCSEEEECSC
T ss_pred CCeEEEE-c-CCCHHHHHHHHHHHHcCCCcEecccccccccch------------------------hhhhccccccccc
Confidence 3578889 6 578888999999987678899999887543221 1234566666666
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.....+.+..+.+.+++ |.+++
T Consensus 63 ~~~~~~v~~~~~~~~~~-~~iii 84 (152)
T d2pv7a2 63 INLTLETIERLKPYLTE-NMLLA 84 (152)
T ss_dssp GGGHHHHHHHHGGGCCT-TSEEE
T ss_pred hhhheeeeecccccccC-CceEE
Confidence 55666666666666665 33443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.67 E-value=0.91 Score=35.20 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=54.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHH------hhhc--
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSL------LLSH-- 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~------l~~l-- 108 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. +. ..++.++..|..+. +...
T Consensus 4 ~gKvalVT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIIT-GSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEET-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 56778888 765553 355565555558999999999999888877775 32 45799999986432 1111
Q ss_pred -cCCccEEEEcC
Q 041509 109 -FREADFVLIDC 119 (211)
Q Consensus 109 -~~~fD~VfiD~ 119 (211)
.+++|.++..+
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 47899998764
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=88.59 E-value=2.2 Score=31.06 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=42.9
Q ss_pred CeEEEEccccHHHHHHHHHHHcc-C---CCcEEEEEeCChhHHHHHHHHh----cCCCCcEE-EEEcchHHHhhhccCCc
Q 041509 42 QLMVVACANVANATTLALAAAAH-Q---TGGRVVCILRRVEEYKLSKKIL----GLDASHVE-FVIGDAQSLLLSHFREA 112 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~-~---~~g~v~tiE~~~~~~~~Ar~~~----~~~~~~V~-~~~gda~e~l~~l~~~f 112 (211)
-+|.=| |+|+.+++..+...+. . +..+++-+|+|++.++...+-+ .......+ ....|-.+.+. ..
T Consensus 4 ~KI~iI-GaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~----~A 78 (167)
T d1u8xx1 4 FSIVIA-GGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----DV 78 (167)
T ss_dssp EEEEEE-CTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----SC
T ss_pred ceEEEE-CCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC----CC
Confidence 457778 8776544333222221 1 1368999999999876333332 21122233 34556655543 57
Q ss_pred cEEEEcCCcC
Q 041509 113 DFVLIDCNLE 122 (211)
Q Consensus 113 D~VfiD~~~~ 122 (211)
|+|++-+...
T Consensus 79 D~Vvitag~~ 88 (167)
T d1u8xx1 79 DFVMAHIRVG 88 (167)
T ss_dssp SEEEECCCTT
T ss_pred CEEEECCCcC
Confidence 9999987653
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.37 E-value=0.59 Score=32.66 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=47.8
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcH--HHHHHHHH
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENH--EGVLRAVQ 132 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y--~~~l~~~~ 132 (211)
+-+|.-||-++......++.++...-.+. ...++.+.+..+..+||+|++|..-+.. .+..+.+.
T Consensus 7 g~rILvVDD~~~~~~~l~~~L~~~G~~v~-~a~~g~eal~~l~~~~dlillD~~mP~~dG~el~~~ir 73 (134)
T d1dcfa_ 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVT-TVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIH 73 (134)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHhhcCCCeEEEEeccCCCchHHHHHHHH
Confidence 56999999999999999998883223444 5678888887667789999999865522 34455554
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.35 E-value=2.3 Score=28.70 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=47.4
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
-+|.-||-|+...+..++.+....-.|. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+...
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~ 70 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKEMFTVD-VCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRES 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEE-EEcchHHHHHHHHhhCccccccccccccchhHHHHHHHHhc
Confidence 4788999999999999999882222344 567777766544 57999999997654 445666666553
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.16 E-value=1.4 Score=33.91 Aligned_cols=75 Identities=13% Similarity=0.027 Sum_probs=51.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccCCcc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFREAD 113 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~~fD 113 (211)
.+|-. |.+.|. +..+|+.+...+.+|+.++++++.++.+.+.+.....++..+..|..+. +.. ..+++|
T Consensus 3 ValIT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 3 VALVT-GAGQGI-GKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEc-CCccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 34666 655543 3455655555588999999999998888777763345788888986542 111 157899
Q ss_pred EEEEcC
Q 041509 114 FVLIDC 119 (211)
Q Consensus 114 ~VfiD~ 119 (211)
.++-.+
T Consensus 81 ilVnnA 86 (255)
T d1gega_ 81 VIVNNA 86 (255)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 998764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.01 E-value=0.35 Score=35.96 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---CCCcEEEEEcchHHHhhhc-------
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---DASHVEFVIGDAQSLLLSH------- 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---~~~~V~~~~gda~e~l~~l------- 108 (211)
+-++|--| |+|+=-+++.+..+ ..+-+|+.+|.+++.++.+.+.+. . ...+-.+...+..+.+..+
T Consensus 3 ~I~~vaVi-GaG~mG~~iA~~~a--~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (186)
T d1wdka3 3 DVKQAAVL-GAGIMGGGIAYQSA--SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG 79 (186)
T ss_dssp CCSSEEEE-CCHHHHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST
T ss_pred CCCEEEEE-CcCHHHHHHHHHHH--hCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc
Confidence 34668888 87653333332222 236799999999999888777654 1 0000011111122222111
Q ss_pred -cCCccEEEEcCCcCc---HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 109 -FREADFVLIDCNLEN---HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 109 -~~~fD~VfiD~~~~~---y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-...|+|+- +-.++ ..+.++++.+.+.| ++++ +.|...
T Consensus 80 ~~~~adlViE-av~E~l~~K~~lf~~l~~~~~~-~~Ii-aSnTS~ 121 (186)
T d1wdka3 80 DFGNVDLVVE-AVVENPKVKQAVLAEVENHVRE-DAIL-ASNTST 121 (186)
T ss_dssp TGGGCSEEEE-CCCSCHHHHHHHHHHHHTTSCT-TCEE-EECCSS
T ss_pred cccccceeee-eecchHHHHHHHHHHHHhhcCC-CeeE-Eecccc
Confidence 135688885 44443 47799999998876 6654 466543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=88.01 E-value=0.75 Score=33.33 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-cHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-NHEGV 127 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-~y~~~ 127 (211)
|.|..+..||+.+...+-+|+..|++++..+...+... ......+ ...+..++... -...+.+++-.... .....
T Consensus 8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (178)
T d1pgja2 8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLK-AFETMEAFAAS-LKKPRKALILVQAGAATDST 85 (178)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEE-ECSCHHHHHHH-BCSSCEEEECCCCSHHHHHH
T ss_pred eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchh-hhhhhhHHHHh-cccceEEEEeecCcchhhhh
Confidence 45677777887776667889999999998877766544 2223333 23344444443 34445555444333 34456
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCC-c------eecCCCcEEEeecCCc
Q 041509 128 LRAVQAGNKPNGAVVVGYNAFRKG-S------WRSSGSKSQLLPIGEG 168 (211)
Q Consensus 128 l~~~~~~L~pgG~viv~dn~~~~~-~------~~~~~~~~v~lpig~G 168 (211)
+..+...+.+ |.+++......+. . ....++..+-.|+..|
T Consensus 86 ~~~~~~~~~~-~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~ 132 (178)
T d1pgja2 86 IEQLKKVFEK-GDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG 132 (178)
T ss_dssp HHHHHHHCCT-TCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred hhhhhhhccc-cceecccCccchhHHHHHHHHHhhcceeEecccccCC
Confidence 6777777887 4455523222221 1 1245566666665554
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=87.96 E-value=3.5 Score=29.66 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=57.4
Q ss_pred eEEEEccccHHHHHHHHHHHccC--CCcEEEEE-eCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQ--TGGRVVCI-LRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~--~~g~v~ti-E~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|.=| |||.-....++ .++.. ...++++| |.+++.++...+.+.. .....|..+++. +..+|+|++..
T Consensus 5 rigiI-G~G~~g~~~h~-~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~ell~--~~~id~v~I~t 75 (181)
T d1zh8a1 5 RLGIV-GCGIAARELHL-PALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLE--SGLVDAVDLTL 75 (181)
T ss_dssp EEEEE-CCSHHHHHTHH-HHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHH--SSCCSEEEECC
T ss_pred EEEEE-cCCHHHHHHHH-HHHHhCCCCeEEEEEEeccHhhhhhhhccccc-----cceeeeeecccc--ccccceeeccc
Confidence 57778 88643322222 22221 23577764 8988877665554431 124578888776 47799999998
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.....++...+.+ .|.=++++-.+.
T Consensus 76 p~~~h~~~~~~al~----~gk~V~~EKPl~ 101 (181)
T d1zh8a1 76 PVELNLPFIEKALR----KGVHVICEKPIS 101 (181)
T ss_dssp CGGGHHHHHHHHHH----TTCEEEEESSSS
T ss_pred cccccccccccccc----cchhhhcCCCCc
Confidence 87766666666665 355556675443
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.83 E-value=0.5 Score=34.50 Aligned_cols=89 Identities=7% Similarity=0.010 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-cHHHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-NHEGVLR 129 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-~y~~~l~ 129 (211)
|.|..+..||..+...+-+|+..|++++..+...++-.. .....-.....+... .-...|.+++..... ...+.++
T Consensus 9 GlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~-~~~~~~~ii~~~~~~~~v~~v~~ 85 (176)
T d2pgda2 9 GLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK--GTKVLGAHSLEEMVS-KLKKPRRIILLVKAGQAVDNFIE 85 (176)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT--TSSCEECSSHHHHHH-HBCSSCEEEECSCTTHHHHHHHH
T ss_pred eEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccc--cccccchhhhhhhhh-hhcccceEEEecCchHHHHHHHH
Confidence 457788888888876677999999999988766554221 111111223333333 345667777765443 5566778
Q ss_pred HHHhcCCCCcEEEE
Q 041509 130 AVQAGNKPNGAVVV 143 (211)
Q Consensus 130 ~~~~~L~pgG~viv 143 (211)
.+.+.+++ |.+++
T Consensus 86 ~l~~~~~~-g~iii 98 (176)
T d2pgda2 86 KLVPLLDI-GDIII 98 (176)
T ss_dssp HHHHHCCT-TCEEE
T ss_pred HHHhcccc-CcEEE
Confidence 88888887 55555
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.72 E-value=1.1 Score=34.65 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH------hhh---cc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL------LLS---HF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~------l~~---l~ 109 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. ....++..+..|..+. ... ..
T Consensus 4 ~gK~~lIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVT-GGSRGL-GFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56888888 765554 345555554558999999999988777666554 2345688888886432 111 14
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
+++|.++..+
T Consensus 82 g~iDiLVnnA 91 (251)
T d1vl8a_ 82 GKLDTVVNAA 91 (251)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 7899999775
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.34 E-value=1.3 Score=34.41 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=54.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHh---------hhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLL---------LSH 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l---------~~l 108 (211)
.++|++|-. |++.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. .....+.+...|..+.- ...
T Consensus 12 L~GK~alIT-GassGI-G~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVT-GASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEES-SCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEe-CCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 467889999 877764 466666666668999999999999888776654 33456777777643211 112
Q ss_pred cCCccEEEEcC
Q 041509 109 FREADFVLIDC 119 (211)
Q Consensus 109 ~~~fD~VfiD~ 119 (211)
.+..|+++..+
T Consensus 90 ~g~~~~li~na 100 (269)
T d1xu9a_ 90 MGGLDMLILNH 100 (269)
T ss_dssp HTSCSEEEECC
T ss_pred hCCcccccccc
Confidence 56889888764
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=86.95 E-value=1.8 Score=30.82 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=56.1
Q ss_pred eEEEEccccHHHHHHHHHHHcc-CCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAH-QTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~-~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+|.=| |||.-....++ .++. .++-.+..+|.+++..+...+.+... ....|..+++. ..+|+|++-.+.
T Consensus 3 rvgii-G~G~~~~~~~~-~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~ll~---~~iD~V~I~tp~ 72 (167)
T d1xeaa1 3 KIAMI-GLGDIAQKAYL-PVLAQWPDIELVLCTRNPKVLGTLATRYRVS-----ATCTDYRDVLQ---YGVDAVMIHAAT 72 (167)
T ss_dssp EEEEE-CCCHHHHHTHH-HHHTTSTTEEEEEECSCHHHHHHHHHHTTCC-----CCCSSTTGGGG---GCCSEEEECSCG
T ss_pred EEEEE-cCCHHHHHHHH-HHHHhCCCcEEEEEECCHHHHHHHHHhcccc-----cccccHHHhcc---cccceecccccc
Confidence 46678 88642222222 2232 23567889999998887777665511 12356666653 368999999888
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
....++...+.+ .|.=++++=.+
T Consensus 73 ~~H~~~~~~al~----~gk~V~~EKP~ 95 (167)
T d1xeaa1 73 DVHSTLAAFFLH----LGIPTFVDKPL 95 (167)
T ss_dssp GGHHHHHHHHHH----TTCCEEEESCS
T ss_pred cccccccccccc----cccccccCCCC
Confidence 777777776665 24434556433
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=86.85 E-value=1.7 Score=33.35 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=54.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+.. ..++.++..|..+. ... ..+
T Consensus 5 ~gK~alVT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIIT-GGTLGI-GLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEET-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56788888 765553 3555555555589999999999998888877762 35789999986542 111 147
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|+++..+
T Consensus 82 ~iDiLVnnA 90 (251)
T d1zk4a1 82 PVSTLVNNA 90 (251)
T ss_dssp SCCEEEECC
T ss_pred CceEEEecc
Confidence 899888765
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=86.70 E-value=3.9 Score=30.62 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=58.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccC-CCcEEEE-EeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQ-TGGRVVC-ILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~-~~g~v~t-iE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
-+|-=| |||.-.. -.++.++.. .+.+|++ +|.+++.++.+.+.+.....++. ...|..+++. +..+|+|++..
T Consensus 34 iriaiI-G~G~~~~-~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~-~~~d~~ell~--~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIV-GLGKYAL-NQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY-DYSNFDKIAK--DPKIDAVYIIL 108 (221)
T ss_dssp EEEEEE-CCSHHHH-HTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE-CSSSGGGGGG--CTTCCEEEECS
T ss_pred EEEEEE-cCcHHHH-HHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccccccc-ccCchhhhcc--cccceeeeecc
Confidence 357778 8863221 223333332 3577774 59999887766665531112222 2366677664 46899999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
......++...+++ .|.=++++-.+.
T Consensus 109 p~~~H~~~~~~al~----~gk~v~~EKPla 134 (221)
T d1h6da1 109 PNSLHAEFAIRAFK----AGKHVMCEKPMA 134 (221)
T ss_dssp CGGGHHHHHHHHHH----TTCEEEECSSCC
T ss_pred chhhhhhHHHHhhh----cchhhhcCCCcc
Confidence 87766666666654 355556675544
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.57 E-value=1.6 Score=34.01 Aligned_cols=79 Identities=9% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHh---------hhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLL---------LSH 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l---------~~l 108 (211)
.+.|++|-. |++.| .+..+|+.+...+.+|+.++.+++.++.+.+.+. ....++.++..|..+.- ...
T Consensus 23 l~gK~alIT-Gas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 23 FQGKVAFIT-GGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTTCEEEEE-TTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence 456889999 76555 3455665555558899999999988777666664 22456788888764321 112
Q ss_pred cCCccEEEEcC
Q 041509 109 FREADFVLIDC 119 (211)
Q Consensus 109 ~~~fD~VfiD~ 119 (211)
.+.+|.++..+
T Consensus 101 ~g~iDilvnnA 111 (294)
T d1w6ua_ 101 AGHPNIVINNA 111 (294)
T ss_dssp TCSCSEEEECC
T ss_pred ccccchhhhhh
Confidence 57899988764
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.33 E-value=2.7 Score=28.46 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=45.9
Q ss_pred EEEEEeCChhHHHHHHHHhcCCCCcEEE--EEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 69 RVVCILRRVEEYKLSKKILGLDASHVEF--VIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~~~~~~V~~--~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
+|.-+|-++...+..++.+.... ..+. ...|+.+.+..+ ..+||+|++|-.-+ +-.+.++.+...
T Consensus 3 rILivDD~~~~~~~l~~~L~~~~-~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~~dG~e~~~~ir~~ 72 (123)
T d1dz3a_ 3 KVCIADDNRELVSLLDEYISSQP-DMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAG 72 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTST-TEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 68889999999999999887222 2333 355766666544 46899999998665 446677777654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.20 E-value=4.3 Score=31.08 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=66.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC-hhHHHHHHHHhcCCCCcEEEEEcchHHH------hh---hc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR-VEEYKLSKKILGLDASHVEFVIGDAQSL------LL---SH 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~-~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~---~l 108 (211)
.+.|.+|-. |++.|. +..+|+.+...+.+|+..+.+ ++.++...+.++....++.++..|..+. +. +.
T Consensus 16 L~gK~~lIT-Gas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 16 LEGKVALVT-GAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp CTTCEEEET-TTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 466888888 776664 455666665557899998877 4555655555553345688888886542 11 11
Q ss_pred cCCccEEEEcCCcC-----------cH-----------HHHHHHHHhcCCCCcEEEEEec
Q 041509 109 FREADFVLIDCNLE-----------NH-----------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-----------~y-----------~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++.|+++..+... ++ ....+.+.+.|+.+|.+++.-.
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s 153 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 153 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence 47899998764211 11 3335566677777777766543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.13 E-value=0.87 Score=37.32 Aligned_cols=46 Identities=7% Similarity=-0.107 Sum_probs=36.7
Q ss_pred CeEEEEccccHHHHHHHHHHHccC-----CCcEEEEEeCChhHHHHHHHHhc
Q 041509 42 QLMVVACANVANATTLALAAAAHQ-----TGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~-----~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
-+|||+ |+|.|..+.-+...+.. ..-+++-+|.+|...+.-++.+.
T Consensus 81 ~~ivE~-GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 81 LRLIEI-GPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp EEEEEE-CCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred ceEEec-CCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 469999 99999998877766542 24578999999998888877765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=2.3 Score=33.61 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CCCCcEEEEEcchHHH------hhh
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LDASHVEFVIGDAQSL------LLS 107 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~~~~V~~~~gda~e~------l~~ 107 (211)
.+.|.+|-. |++.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. ....++..+..|..+. +..
T Consensus 10 L~gKvalIT-Gas~GI-G~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 10 LQGQVAIVT-GGATGI-GKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 467888988 766664 355565555558899999999988777666554 2245788899886432 111
Q ss_pred ---ccCCccEEEEcC
Q 041509 108 ---HFREADFVLIDC 119 (211)
Q Consensus 108 ---l~~~fD~VfiD~ 119 (211)
..++.|+++..+
T Consensus 88 ~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 88 TLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCeEEEEeec
Confidence 147899999875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.97 E-value=1 Score=34.77 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH------hh---hc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL------LL---SH 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~------l~---~l 108 (211)
.+.|++|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. ....++.++..|..+. +. +.
T Consensus 7 l~gK~alIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 7 FVNKTIIVT-GGNRGI-GLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CTTEEEEEE-TTTSHH-HHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356888888 765554 355666555558899999999887766655553 2345688888886432 11 11
Q ss_pred cCCccEEEEcC
Q 041509 109 FREADFVLIDC 119 (211)
Q Consensus 109 ~~~fD~VfiD~ 119 (211)
.++.|.++..+
T Consensus 85 ~g~iDilVnnA 95 (260)
T d1h5qa_ 85 LGPISGLIANA 95 (260)
T ss_dssp SCSEEEEEECC
T ss_pred hCCCcEecccc
Confidence 57999988765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=85.76 E-value=2.2 Score=28.96 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH---------HHHHHHHhcCCCCcEEEEE
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE---------YKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~---------~~~Ar~~~~~~~~~V~~~~ 98 (211)
.+.-+.......++++|+-+ |. |+.++.+|..+...+.+||-+|..+.. .+..++.++ ...|+++.
T Consensus 17 da~~i~~~~~~~~~k~vvVi-Gg--G~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~--~~gv~~~~ 91 (123)
T d1nhpa2 17 WAIKLKQKTVDPEVNNVVVI-GS--GYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEME--ANNITIAT 91 (123)
T ss_dssp HHHHHHHHHTCTTCCEEEEE-CC--SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHH--TTTEEEEE
T ss_pred HHHHHHHHhhccCCCEEEEE-CC--hHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhh--cCCeEEEe
Confidence 34545555566678899988 64 567788888777768899999876533 333444443 33477777
Q ss_pred cchHH
Q 041509 99 GDAQS 103 (211)
Q Consensus 99 gda~e 103 (211)
+...+
T Consensus 92 ~~~v~ 96 (123)
T d1nhpa2 92 GETVE 96 (123)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 76543
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.67 E-value=3.3 Score=27.75 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=46.3
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
.+|.-||-|+...+..+..++...-.|. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+...
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r~~ 71 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQ 71 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHhcccccEEEecccccCCCCchhhhhhhcc
Confidence 5899999999999999999982222343 466777666544 46899999997655 334556666553
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.23 E-value=3.5 Score=28.30 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=52.3
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCC-cEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDAS-HVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~-~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
-+|.-||-++...+..++.++...+ .+-....|+.+.+..+ ..+||+|++|..-+ +-.+.++.+.+. .|...+++
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~~~G~el~~~ir~~-~~~~~viv 81 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK-SLSGRIVV 81 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHS-CCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhh-CCCCCEEE
Confidence 5789999999999888888873222 2223466777766543 45899999997655 456778888764 34455555
Q ss_pred Ee
Q 041509 144 GY 145 (211)
Q Consensus 144 ~d 145 (211)
..
T Consensus 82 lt 83 (138)
T d1a04a2 82 FS 83 (138)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=85.08 E-value=3 Score=28.08 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=49.8
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEE
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~ 144 (211)
-+|.-||-++...+..++.+....-.+. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+... .|.=.+++.
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~-~~~~pvi~l 79 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVI-DENIRVIIM 79 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHH-CTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEE-EeCCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHh-CCCCcEEEE
Confidence 4899999999999999998872122333 466777766544 45899999997654 345666666553 333334443
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.06 E-value=2.9 Score=28.56 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=47.6
Q ss_pred EEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc------cCCccEEEEcCCcC--cHHHHHHHHHhcCCCC
Q 041509 69 RVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH------FREADFVLIDCNLE--NHEGVLRAVQAGNKPN 138 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l------~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pg 138 (211)
+|.-||-++...+..++.++ |. ..|+ ...|+.+.+..+ ..+||+|++|..-+ +-.+.++.+.+...+.
T Consensus 3 rVLvVDD~~~~~~~l~~~L~~~g~-~~v~-~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~~ 80 (128)
T d2r25b1 3 KILVVEDNHVNQEVIKRMLNLEGI-ENIE-LACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 80 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTC-CCEE-EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCC-eEEE-EEcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCCC
Confidence 68889999999999999888 32 3455 345655554322 46899999997655 3456677775433332
Q ss_pred cEEEE
Q 041509 139 GAVVV 143 (211)
Q Consensus 139 G~viv 143 (211)
-.+++
T Consensus 81 ~piI~ 85 (128)
T d2r25b1 81 SPIVA 85 (128)
T ss_dssp SCEEE
T ss_pred CeEEE
Confidence 22444
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=85.01 E-value=3.6 Score=26.93 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++|.=| | +|+|.|+++.... ..+-+|++-|..+... .+...+ ..+++..+...+.+ ...|+|+.
T Consensus 6 ~~~~~ihfi-GigG~GMs~LA~~L~--~~G~~VsGSD~~~~~~--~~~L~~---~Gi~v~~g~~~~~i----~~~d~vV~ 73 (96)
T d1p3da1 6 RRVQQIHFI-GIGGAGMSGIAEILL--NEGYQISGSDIADGVV--TQRLAQ---AGAKIYIGHAEEHI----EGASVVVV 73 (96)
T ss_dssp TTCCEEEEE-TTTSTTHHHHHHHHH--HHTCEEEEEESCCSHH--HHHHHH---TTCEEEESCCGGGG----TTCSEEEE
T ss_pred hhCCEEEEE-EECHHHHHHHHHHHH--hCCCEEEEEeCCCChh--hhHHHH---CCCeEEECCccccC----CCCCEEEE
Confidence 456777777 4 7788877543222 2378999999864321 111112 12566777776654 35799998
Q ss_pred cCCcC-cHHHHHH
Q 041509 118 DCNLE-NHEGVLR 129 (211)
Q Consensus 118 D~~~~-~y~~~l~ 129 (211)
....+ +-.++.+
T Consensus 74 S~AI~~~npel~~ 86 (96)
T d1p3da1 74 SSAIKDDNPELVT 86 (96)
T ss_dssp CTTSCTTCHHHHH
T ss_pred CCCcCCCCHHHHH
Confidence 87654 3344333
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.53 Score=30.73 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=48.2
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++|+-+ |- .+|.+++. .+...+.+|+..|.++..... +.+ ...+.+..+...+.. ...+|+|++
T Consensus 3 ~~~K~v~Vi-GlG~sG~s~a~---~L~~~g~~v~~~D~~~~~~~~--~~~---~~~~~~~~~~~~~~~---~~~~d~vi~ 70 (93)
T d2jfga1 3 YQGKNVVII-GLGLTGLSCVD---FFLARGVTPRVMDTRMTPPGL--DKL---PEAVERHTGSLNDEW---LMAADLIVA 70 (93)
T ss_dssp CTTCCEEEE-CCSHHHHHHHH---HHHHTTCCCEEEESSSSCTTG--GGS---CTTSCEEESBCCHHH---HHHCSEEEE
T ss_pred cCCCEEEEE-eECHHHHHHHH---HHHHCCCEEEEeeCCcCchhH--HHH---hhccceeecccchhh---hccCCEEEE
Confidence 356788888 63 35555444 443447899999986542211 111 233445555532221 236899999
Q ss_pred cCCcCcHHHHHHHHHh
Q 041509 118 DCNLENHEGVLRAVQA 133 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~ 133 (211)
....+.-...++.+.+
T Consensus 71 SPGi~~~~~~~~~a~~ 86 (93)
T d2jfga1 71 SPGIALAHPSLSAAAD 86 (93)
T ss_dssp CTTSCTTSHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHH
Confidence 8876655566777665
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.61 E-value=2.4 Score=28.75 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=47.3
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHh
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQA 133 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~ 133 (211)
.++|.-||-|+...+..++.++...-.|. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+.+
T Consensus 3 k~~ILIVDDd~~~~~~l~~~L~~~g~~v~-~a~~~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~ 71 (123)
T d1krwa_ 3 RGIVWVVDDDSSIRWVLERALAGAGLTCT-TFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (123)
T ss_dssp CCEEEEESSSHHHHHHHHHHHHHTTCEEE-EESSSHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEE-EeCCHHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHHH
Confidence 46899999999999999999882222444 467777766554 56899999997654 33556666654
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.52 E-value=1.9 Score=31.51 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHhhcCC--cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHH---HHHccCCCcEEEEEeCChhH
Q 041509 5 SAENATKAYLKTLKMGQ--KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLAL---AAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 5 ~~~~~~~ay~~~~~~~~--~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~l---a~a~~~~~g~v~tiE~~~~~ 79 (211)
+-...+.+|+-..-..+ .-+.|.+.+.+..+.+. ...++.. .||+|-+.+++ ...+.. +++++.+-+..+.
T Consensus 5 ~~~~~~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~--~~~il~a-pTGsGKT~~a~l~i~~~~~~-~~~vl~l~P~~~L 80 (202)
T d2p6ra3 5 ELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG--KNLLLAM-PTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRAL 80 (202)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTC--SCEEEEC-SSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEc-CCCCchhHHHHHHHHHHhhc-cCcceeecccHHH
Confidence 33444556665432222 24667777777776543 3467888 79999987653 333333 6788888888887
Q ss_pred HHHHHHHhc---CCCCcEEEEEcch
Q 041509 80 YKLSKKILG---LDASHVEFVIGDA 101 (211)
Q Consensus 80 ~~~Ar~~~~---~~~~~V~~~~gda 101 (211)
+....+.+. +...++....++.
T Consensus 81 ~~q~~~~~~~~~~~~~~v~~~~~~~ 105 (202)
T d2p6ra3 81 AGEKYESFKKWEKIGLRIGISTGDY 105 (202)
T ss_dssp HHHHHHHHTTTTTTTCCEEEECSSC
T ss_pred HHHHHHHHHHHhhccccceeeccCc
Confidence 777777776 2244566665553
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=83.96 E-value=4.5 Score=27.16 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=46.3
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
-+|.-||-|+...+..+..++...-.|. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+...
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~ 72 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQLGAEVT-VHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ 72 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCeE-EECCHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5799999999999999999982222333 445656655433 35799999998765 346677777654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.84 E-value=0.79 Score=33.58 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=52.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEe--CChhHHHHHHHHhc--CC---CCcEEEEE-cchHHHhhhccCCccE
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCIL--RRVEEYKLSKKILG--LD---ASHVEFVI-GDAQSLLLSHFREADF 114 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE--~~~~~~~~Ar~~~~--~~---~~~V~~~~-gda~e~l~~l~~~fD~ 114 (211)
+|.-| |+| ..+..+|..+...+-.|+-.. .+++.++...++-. .+ .....+.. .|..+. ....|+
T Consensus 2 kI~Vi-GaG--~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~ad~ 74 (180)
T d1txga2 2 IVSIL-GAG--AMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC----LENAEV 74 (180)
T ss_dssp EEEEE-SCC--HHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH----HTTCSE
T ss_pred EEEEE-CCC--HHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHH----Hhccch
Confidence 35566 654 444555555544345666654 45555544433221 11 12223322 232333 346899
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
|++--+.....+.++++.+.+++ ..+++
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~-~~ii~ 102 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKD-QYIVL 102 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCS-CEEEE
T ss_pred hhcccchhhhHHHHHhhcccccc-ceecc
Confidence 99988877888999999999876 44544
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.26 E-value=3.5 Score=27.74 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=45.2
Q ss_pred EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCc--HHHHHHHHHh
Q 041509 69 RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLEN--HEGVLRAVQA 133 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~--y~~~l~~~~~ 133 (211)
+|.-||-|+...+..+..++...-.|. ...++.+.+..+ ..+||+|++|..-+. -.+.++.+..
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~ 70 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAEGYDVF-EATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELRE 70 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEE-EESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEE-EECChHHHHHHHHhcCCCEEEeecccCCccCcHHHHHHHh
Confidence 899999999999999999883222343 556777666544 579999999976542 3455555554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=82.76 E-value=0.92 Score=32.43 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-cHHHHH-
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-NHEGVL- 128 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-~y~~~l- 128 (211)
|.|..+..+|..+...+-+|+..|++++..+.+++.-. ....+..+... ..|+||+--... ...+.+
T Consensus 7 GlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~-------~~~~~~~e~~~----~~d~ii~~v~~~~~v~~v~~ 75 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGA-------ETASTAKAIAE----QCDVIITMLPNSPHVKEVAL 75 (161)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-------EECSSHHHHHH----HCSEEEECCSSHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhh-------hhcccHHHHHh----CCCeEEEEcCCHHHHHHHHh
Confidence 34666777777665556789999999998877765322 12344555544 368888875433 334443
Q ss_pred --HHHHhcCCCCcEEEE
Q 041509 129 --RAVQAGNKPNGAVVV 143 (211)
Q Consensus 129 --~~~~~~L~pgG~viv 143 (211)
+.+...++| |.+++
T Consensus 76 ~~~~~~~~~~~-g~iii 91 (161)
T d1vpda2 76 GENGIIEGAKP-GTVLI 91 (161)
T ss_dssp STTCHHHHCCT-TCEEE
T ss_pred CCcchhhccCC-CCEEE
Confidence 335556776 55655
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.70 E-value=3.9 Score=31.21 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.|.+|-. |++.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. +++.++..|..+. +.+ ..+
T Consensus 5 ~gK~alIT-Gas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 5 TGKVALVS-GGARGM-GASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 56888888 766653 455555555558899999999988877666554 4677888885432 111 147
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
+.|+++..+
T Consensus 80 ~idilinnA 88 (244)
T d1nffa_ 80 GLHVLVNNA 88 (244)
T ss_dssp CCCEEEECC
T ss_pred CCeEEEECC
Confidence 899998775
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=82.65 E-value=3.1 Score=28.37 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=45.6
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCC-CcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHh
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDA-SHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQA 133 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~-~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~ 133 (211)
-+|.-||-++......++.+.... ..|. ...|+.+.+..+ ..+||+|++|..-+ +-.+.++.+..
T Consensus 7 ~kILiVDD~~~~~~~l~~~L~~~g~~~v~-~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~ 75 (129)
T d1p6qa_ 7 IKVLIVDDQVTSRLLLGDALQQLGFKQIT-AAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRA 75 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEE-CCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHh
Confidence 479999999999999998888322 2233 345666655444 57899999998765 34667777755
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=82.30 E-value=5.2 Score=26.72 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=46.3
Q ss_pred EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 69 RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
+|.-||-|+...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-.-+ +-.+.++.+...
T Consensus 2 rILvVDDd~~~~~~l~~~L~~~G~~v~-~a~~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~ 69 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQDAGHQVD-DAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhcccceeehhccCCCchhHHHHHHHHhc
Confidence 578899999999999999882222333 566666666544 57899999997654 345677777664
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.18 E-value=1.3 Score=29.78 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=34.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh--------HHHHHHHHhc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE--------EYKLSKKILG 88 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~--------~~~~Ar~~~~ 88 (211)
...|++|+-| |. |+.++.+|..+...+.+||-+|..+. +.+...+.++
T Consensus 19 ~~~p~~v~Ii-Gg--G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~ 74 (117)
T d1ebda2 19 GEVPKSLVVI-GG--GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLK 74 (117)
T ss_dssp SSCCSEEEEE-CC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHH
T ss_pred hhcCCeEEEE-CC--CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHH
Confidence 3458999999 64 56777888777766889999997765 4555555554
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.95 E-value=5.5 Score=26.73 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=46.5
Q ss_pred EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 69 RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
+|.-||-++...+..++.++...-.|. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+...
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~ 70 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSGFEVA-TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM 70 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhc
Confidence 788999999999999988882122333 566777766544 57899999997654 445666777653
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.94 E-value=2.6 Score=28.28 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=46.1
Q ss_pred EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHh
Q 041509 69 RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQA 133 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~ 133 (211)
+|.-||-++...+..+..+....-.|. ...|+.+.+..+ ..+||+|++|..-+ +-.+.++.+.+
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i~~ 68 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEGYEVV-TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRK 68 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhcCCCEEEeccccCCCCccHHHHHHHh
Confidence 688899999999999998882222344 567777766544 56899999997654 34566777765
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=81.90 E-value=3.9 Score=28.08 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=45.3
Q ss_pred EEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHh
Q 041509 69 RVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQA 133 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~ 133 (211)
+|.-||-|+...+..+..+. |+ .|. ...++.+.+..+ ..+||+|++|..-+ +-.+.++.+..
T Consensus 2 kILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~ 68 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKE 68 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHH
Confidence 57889999999999999998 43 344 467777766544 57899999997544 44566666654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=81.54 E-value=7 Score=27.71 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=59.5
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l 108 (211)
++........+.++||=| |+ |-.+..+++.+...+ .+++-+-.+.+.++...+.+.. + ..+..+. ...
T Consensus 13 ~la~~~~~~l~~~~ilvi-Ga--G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-----~--~~~~~~~-~~~ 81 (159)
T d1gpja2 13 ELAERELGSLHDKTVLVV-GA--GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-----E--AVRFDEL-VDH 81 (159)
T ss_dssp HHHHHHHSCCTTCEEEEE-SC--CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-----E--ECCGGGH-HHH
T ss_pred HHHHHHhCCcccCeEEEE-CC--CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-----c--cccchhH-HHH
Confidence 344444445678899999 87 444444444443323 5788888887655443333331 1 1122222 212
Q ss_pred cCCccEEEEcCCcCcH---HHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 109 FREADFVLIDCNLENH---EGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y---~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
-..+|+||.....+.| .+.++.....-+.+..+++.|-..++
T Consensus 82 l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 82 LARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 126 (159)
T ss_dssp HHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred hccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence 3479999987654433 45555554432223345666865554
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.38 E-value=0.97 Score=35.69 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=53.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhc--cCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSH--FREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l--~~~fD~V 115 (211)
+.++||-+ | |+|+.+.++++.+-..+-+|++++.++.....-.+.. ...++++++.+|..+. +.+. ...+|.|
T Consensus 7 ~~KkILVT-G-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~-~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v 83 (356)
T d1rkxa_ 7 QGKRVFVT-G-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA-RVADGMQSEIGDIRDQNKLLESIREFQPEIV 83 (356)
T ss_dssp TTCEEEEE-T-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHT-TTTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEE-C-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhh-hcccCCeEEEeeccChHhhhhhhhhchhhhh
Confidence 56899999 5 5799999998888776789999998765332211222 2356799999997542 2222 3477888
Q ss_pred EEcCCc
Q 041509 116 LIDCNL 121 (211)
Q Consensus 116 fiD~~~ 121 (211)
+.-+..
T Consensus 84 ~~~aa~ 89 (356)
T d1rkxa_ 84 FHMAAQ 89 (356)
T ss_dssp EECCSC
T ss_pred hhhhcc
Confidence 876543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=81.24 E-value=1.8 Score=33.23 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=51.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC-hhHHHHHHHHhc-CCCCcEEEEEcchHHH------hhhc---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR-VEEYKLSKKILG-LDASHVEFVIGDAQSL------LLSH--- 108 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~-~~~~~~Ar~~~~-~~~~~V~~~~gda~e~------l~~l--- 108 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+ ++.++.+.+.+. ....++.++..|..+. +...
T Consensus 3 ~gK~alIT-Gas~GI-G~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVT-GSTSGI-GLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEET-TCSSHH-HHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CcCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56888877 766554 355555555558899999986 556666666554 2245788888886542 1111
Q ss_pred cCCccEEEEcC
Q 041509 109 FREADFVLIDC 119 (211)
Q Consensus 109 ~~~fD~VfiD~ 119 (211)
.++.|+++..+
T Consensus 81 ~G~iDiLVnnA 91 (260)
T d1x1ta1 81 MGRIDILVNNA 91 (260)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCcEEEeec
Confidence 47899998775
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.81 E-value=5.6 Score=30.30 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++...+.+ .++.++..|..+. ... ..+
T Consensus 5 ~GK~alIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 5 AGKVVVVT-GGGRGI-GAGIVRAFVNSGARVVICDKDESGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TTCEEEEE-TCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56889999 766553 35566655555899999999998877666543 2467788885432 111 147
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.++..+
T Consensus 79 ~iDilVnnA 87 (250)
T d1ydea1 79 RLDCVVNNA 87 (250)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEecc
Confidence 899998775
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=80.81 E-value=3.7 Score=31.76 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=51.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hh---hccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LL---SHFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~---~l~~ 110 (211)
+.|.+|-. |.+.|. +..+|+.+...+.+|+.++.+++.++...+.+. .++..+..|..+. .. +..+
T Consensus 4 ~gK~alIT-Gas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (276)
T d1bdba_ 4 KGEAVLIT-GGASGL-GRALVDRFVAEGAKVAVLDKSAERLAELETDHG---DNVLGIVGDVRSLEDQKQAASRCVARFG 78 (276)
T ss_dssp TTCEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence 56889998 765553 455666665568899999999987766555433 4688888875432 11 1157
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.++..+
T Consensus 79 ~idilvnnA 87 (276)
T d1bdba_ 79 KIDTLIPNA 87 (276)
T ss_dssp CCCEEECCC
T ss_pred Ccccccccc
Confidence 899998765
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.73 E-value=4.5 Score=30.83 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.|++|-. |.+.|. +..+|+.+...+.+|+.++.+++.++.+.+.+. .++..+..|..+. ... ..+
T Consensus 4 ~gK~alVT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 4 DGKTALIT-GSARGI-GRAFAEAYVREGARVAIADINLEAARATAAEIG---PAACAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TTEEEEEE-TCSSHH-HHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 56788888 765554 355565555558899999999987776655543 4677888886432 111 147
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
+.|.++..+
T Consensus 79 ~iDilVnnA 87 (256)
T d1k2wa_ 79 SIDILVNNA 87 (256)
T ss_dssp CCCEEEECC
T ss_pred CccEEEeec
Confidence 899998875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=80.45 E-value=2.2 Score=31.49 Aligned_cols=84 Identities=20% Similarity=0.122 Sum_probs=53.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh---c-----CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL---G-----LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~---~-----~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
++|.-| |+|.-- .++|..+...+.+|+-...+++.++...+.= . .+.+++++ ..|..+.+. ..|
T Consensus 8 ~KI~Vi-GaG~wG--tAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~~l~~a~~----~ad 79 (189)
T d1n1ea2 8 NKAVVF-GSGAFG--TALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEKAYN----GAE 79 (189)
T ss_dssp EEEEEE-CCSHHH--HHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHHHHT----TCS
T ss_pred ceEEEE-CCCHHH--HHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-chhhhhccC----CCC
Confidence 358888 876644 4555555554558999999999887655432 1 23456764 456665543 469
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 041509 114 FVLIDCNLENHEGVLRAVQA 133 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~ 133 (211)
+|++.-+.....+.++.+.+
T Consensus 80 ~iiiavPs~~~~~~~~~~~~ 99 (189)
T d1n1ea2 80 IILFVIPTQFLRGFFEKSGG 99 (189)
T ss_dssp CEEECSCHHHHHHHHHHHCH
T ss_pred EEEEcCcHHHHHHHHHHHHh
Confidence 99997765555666666543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=80.37 E-value=5.5 Score=28.33 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=31.7
Q ss_pred CcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC
Q 041509 67 GGRVVCILRRVEEYKLSKKILG---LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
..++.-+|+|++.++.+....+ ....++.. ..+-.+.+ ..-|+|++-+..+
T Consensus 29 ~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l----~~aDvVVita~~~ 82 (162)
T d1up7a1 29 IDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAV----VDAKYVIFQFRPG 82 (162)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHH----TTCSEEEECCCTT
T ss_pred ccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCccccc----CCCCEEEEecccC
Confidence 4799999999998876554443 22333433 23333332 3469999987654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.33 E-value=4.1 Score=31.22 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---cc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HF 109 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~ 109 (211)
.+.|++|-. |.+.|. +..+|+.+...+.+|+.++.+++.++...+.+ ..++.++..|..+. ... ..
T Consensus 3 L~gK~alVT-Gas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 3 LSGKTVIIT-GGARGL-GAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCSEEEEE-TTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEe-CcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 357889999 766553 34555555555889999999998766554433 35688888886432 111 14
Q ss_pred CCccEEEEcC
Q 041509 110 READFVLIDC 119 (211)
Q Consensus 110 ~~fD~VfiD~ 119 (211)
++.|.++..+
T Consensus 78 g~iDilVnnA 87 (254)
T d1hdca_ 78 GSVDGLVNNA 87 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCccEEEecC
Confidence 7899888765
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.23 E-value=0.65 Score=34.24 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=29.9
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
|--| | .||.++.+|..+.. +-+|+++|+|++.++..++.
T Consensus 3 I~Vi-G--lG~vGl~~a~~~a~-g~~V~g~Din~~~v~~l~~g 41 (196)
T d1dlja2 3 IAVA-G--SGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNG 41 (196)
T ss_dssp EEEE-C--CSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTT
T ss_pred EEEE-C--CChhHHHHHHHHHC-CCcEEEEECCHHHHHHHhhc
Confidence 4445 4 67888888877754 78999999999988776643
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=80.15 E-value=2.8 Score=28.19 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=46.8
Q ss_pred cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhc
Q 041509 68 GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAG 134 (211)
Q Consensus 68 g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~ 134 (211)
.+|.-||-|+...+..++.++...-.+. ...|+.+.+..+ ..+||+|++|..-+ +-.+.++.+...
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dlil~D~~mp~~dG~el~~~ir~~ 70 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEAQGYETL-QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE-EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEEeccCCCcHHHHHHHHHhC
Confidence 4789999999999999999882222333 456777766544 46899999997654 446677777653
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