Citrus Sinensis ID: 041513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILSSFSPFKLSNSR
Secondary Structure (PSIPRED)
cccccEEEEEccccccHHHHHHHHHcccccEEccccccccccccccccEEEcccccccccccccccEEEEccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHcccccEEEEEEccccccccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccHHHHHHHHHHHccccEEEEEHcccccccccccEcEHHHccccccccccccEEEEEEHHEcccccEEEEcccccEHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHcccccccccccccccccccEEcccHHcccccccccccccccccccccccHHHccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEHHccHHcccHHHHHHHcccEEEEEEEcccccccHHHccEEEEEcccEccccc
Coil and Loop (DISEMBL)
mdyniltmsfaplDVHEAQVQFALERGLPAMVGLLstyqlpypsrsfdvahcsrclvpwtsydglylMEIDrvlrpggywvvsgppiswktsyrgweRDAKDLQKEQISLENLATRLCWKKIaergpiavwrkptnhlhCIQKLkalksptfcvksdpdavwytkmepcvtplpmvneikdVAGGalekwpkrlntapprirsgfiegitvksfnednQLWKKRVSHYRIILESlfsgkfrniMDMNAGLGGFAAALAKYPVwvmnavpfdakhntlqtgilssfspfklsnsr
Flexible Loop (DISEMBL)
MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPggywvvsgppiswktsyRGWERDAKDLQKEQISLENLATRLCWKKIAERGpiavwrkptnHLHCIQKlkalksptfcVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALekwpkrlntapprirsgfiegitvksfnednqlWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLqtgilssfspfklsnsr
Low Complexity Region (SEG)
MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNaglggfaaalaKYPVWVMNAVPFDAKHNTLQTGILSSFSPFKLSNSR
Disordered region (IsUnstruct)
***NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILS***********
Disordered Region (DISOPRED)
**YNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWER**KDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHC********************VWYTKMEPCVT******************WPKRLNTAP*RI******GITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILSSFSPFKLS***
Disordered Region (DISEMBL)
MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILSSFSPFKLSNSR
Disordered Region (DISPRO)
*DYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEI****GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILSSFSPFKLS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSxxxxxxxxxxxxxxxxxxxxxATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILSSFSPFKLSNSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9ZW75	611	Probable methyltransferas	yes	no	0.928	0.446	0.617	1e-103
Q9SZX8	633	Probable methyltransferas	no	no	0.962	0.447	0.550	3e-99
O80844	631	Probable methyltransferas	no	no	0.962	0.448	0.568	3e-99
Q9C884	639	Probable methyltransferas	no	no	0.931	0.428	0.581	4e-99
Q9ZPH9	633	Probable methyltransferas	no	no	0.972	0.451	0.549	6e-98
B9DFI7	616	Probable methyltransferas	no	no	0.928	0.443	0.558	8e-92
Q94EJ6	621	Probable methyltransferas	no	no	0.914	0.433	0.540	2e-83
Q9C6S7	603	Probable methyltransferas	no	no	0.891	0.434	0.477	4e-71
Q94II3	600	Probable methyltransferas	no	no	0.891	0.436	0.463	3e-67
Q93YV7	608	Probable methyltransferas	no	no	0.884	0.427	0.434	2e-57

>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/277 (61%), Positives = 215/277 (77%), Gaps = 4/277 (1%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           ++Y ILTMS AP D+HEAQVQFALERGLPAM+G+LSTY+LPYPSRSFD+ HCSRCLV WT
Sbjct: 232 LNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWT 291

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
           SYDGLYLME+DRVLRP GYWV+SGPP++ +  ++  +RD+K+LQ +   L ++  RLCW+
Sbjct: 292 SYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWE 351

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
           KIAE  P+ +WRKP+NHL C ++LKALK P  C  SDPDA WY +MEPC+TPLP VN   
Sbjct: 352 KIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVN--- 408

Query: 181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
           D     L+ WP+RLN   PR+++G I+G T+  F  D  LW++RV +Y    + L +GK+
Sbjct: 409 DTNKTVLKNWPERLNHV-PRMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNGKY 467

Query: 241 RNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           RN++DMNAGLGGFAAAL KYP+WVMN VPFD K NTL
Sbjct: 468 RNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTL 504

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score =  361 bits (927), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 158/287 (55%), Positives = 213/287 (74%), Gaps = 4/287 (1%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           +I+ +SFAP D HEAQVQFALERG+PA++G++ + +LPYP+R+FD+AHCSRCL+PW   D
Sbjct: 236 DIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKND 295

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           GLYLME+DRVLRPGGYW++SGPPI+WK  +RGWER  +DL+KEQ S+E++A  LCWKK+ 
Sbjct: 296 GLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVT 355

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
           E+G +++W+KP NH+ C +  +  KSP  C   + D+ WY  +E C+TPLP  N   D A
Sbjct: 356 EKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSA 415

Query: 184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
           GGALE WP R    PPRI  G I  +  + F EDN++WK+R++HY+ I+  L  G+FRNI
Sbjct: 416 GGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRNI 475

Query: 244 MDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSFS 286
           MDMNA LGGFAA++ KYP WVMN VP DA+  TL    + G++ ++ 
Sbjct: 476 MDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQ 522

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score =  361 bits (927), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 166/292 (56%), Positives = 220/292 (75%), Gaps = 9/292 (3%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           NI TMSFAP D HEAQVQFALERG+PAM+G+++T +LPYPSR+FD+AHCSRCL+PW   D
Sbjct: 230 NITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQND 289

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           G YLME+DRVLRPGGYW++SGPPI+W+  ++GWER   DL  EQ  +E +A  LCWKK+ 
Sbjct: 290 GAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVV 349

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCV-KSDPDAVWYTKMEPCVTPLPMVNEIKD- 181
           +R  +A+W+KP NH+ C +  + LK+P FC    DPD  WYTKM+ C+TPLP V++ +D 
Sbjct: 350 QRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDL 409

Query: 182 --VAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF-SG 238
             VAGG +EKWP RLN  PPR+  G +E IT ++F E+ +LWK+RVS+Y+ +   L  +G
Sbjct: 410 KTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETG 469

Query: 239 KFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSFS 286
           ++RN++DMNA LGGFAAALA  PVWVMN VP +AK NTL    + G++ ++ 
Sbjct: 470 RYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQ 521

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1

 Score =  361 bits (926), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 160/275 (58%), Positives = 207/275 (75%), Gaps = 1/275 (0%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           +I+ MSFAP D HEAQVQFALERG+PA++G++ + +LPYP+R+FD+AHCSRCL+PW   D
Sbjct: 253 DIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQND 312

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           GLYL E+DRVLRPGGYW++SGPPI+WK  ++GWER  +DL++EQ S+E+ A  LCWKK+ 
Sbjct: 313 GLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVT 372

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSD-PDAVWYTKMEPCVTPLPMVNEIKDV 182
           E+G +++W+KP NH+ C +  +  K+P  C KSD PD  WY  +E CVTPLP  N   + 
Sbjct: 373 EKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDEF 432

Query: 183 AGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRN 242
           AGGALE WP R    PPRI  G I  I  + F EDN++WK+R+S+Y+ I+  L  G+FRN
Sbjct: 433 AGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFRN 492

Query: 243 IMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           IMDMNA LGGFAAA+ KYP WVMN VP DA+  TL
Sbjct: 493 IMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTL 527

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score =  357 bits (916), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 161/293 (54%), Positives = 221/293 (75%), Gaps = 7/293 (2%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           M  NI+TMSFAP D HEAQVQFALERG+PA++G+L++ +LP+P+R+FD+AHCSRCL+PW 
Sbjct: 236 MSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWG 295

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            Y+G YL+E+DRVLRPGGYW++SGPPI+W+  ++GWER   DL  EQ  +E +A  LCW+
Sbjct: 296 QYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWR 355

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMV--NE 178
           K+ +R  +AVW+KPTNH+HC +   AL  P FC ++ P+  WYTK+E C+TPLP V  +E
Sbjct: 356 KLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSE 415

Query: 179 IKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF-S 237
           IK+VAGG L +WP+RLN  PPRI+SG +EGIT   F  + + W++RVS+Y+   + L  +
Sbjct: 416 IKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAET 475

Query: 238 GKFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSFS 286
           G++RN +DMNA LGGFA+AL   PVWVMN VP +A  NTL    + G++ ++ 
Sbjct: 476 GRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQ 528

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2

 Score =  337 bits (863), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 153/274 (55%), Positives = 197/274 (71%), Gaps = 1/274 (0%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           N+  MSFAP D HEAQVQFALERG+PA++G+L T +LPYP+R+FD+AHCSRCL+PW + D
Sbjct: 229 NVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGAND 288

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           G+YLME+DRVLRPGGYW++SGPPI+WK +Y+ W+R  +DLQ+EQ  +E  A  LCW+K  
Sbjct: 289 GMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKY 348

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
           E G IA+W+K  N   C  +    ++  FC   D D VWY KME C+TP P  +   +VA
Sbjct: 349 EHGEIAIWQKRVNDEACRSRQDDPRA-NFCKTDDTDDVWYKKMEACITPYPETSSSDEVA 407

Query: 184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
           GG L+ +P RLN  PPRI SG I G+TV ++ +DN+ WKK V  Y+ I   L +G++RNI
Sbjct: 408 GGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYRNI 467

Query: 244 MDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           MDMNAG GGFAAAL    +WVMN VP  A+ N L
Sbjct: 468 MDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRL 501

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1

 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/274 (54%), Positives = 192/274 (70%), Gaps = 5/274 (1%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           N+LTMSFAP D HEAQVQFALERG+PA++ +L +  LPYP+R+FD+A CSRCL+PWT+ +
Sbjct: 228 NVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANE 287

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           G YLME+DRVLRPGGYWV+SGPPI+WKT ++ W R   +L  EQ  +E +A  LCW+K  
Sbjct: 288 GTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKY 347

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
           E+G IA++RK  N   C +          C + D D VWY ++E CVTP P V+  ++VA
Sbjct: 348 EKGDIAIFRKKINDRSCDRSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVA 403

Query: 184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
           GG L+K+P+RL   PP I  G I G+  +S+ ED  LWKKRV+ Y+ I   + S ++RN+
Sbjct: 404 GGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRNV 463

Query: 244 MDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           MDMNAGLGGFAAAL     WVMN +P   K NTL
Sbjct: 464 MDMNAGLGGFAAALESPKSWVMNVIPTINK-NTL 496

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score =  268 bits (684), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/272 (47%), Positives = 190/272 (69%), Gaps = 10/272 (3%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           +D  IL++S AP D HEAQVQFALERG+PA++G++ST +LP+PS +FD+AHCSRCL+PWT
Sbjct: 217 LDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWT 276

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            + G+YL+EI R++RPGG+WV+SGPP+++   +RGW    +D + +   L++L T +C+K
Sbjct: 277 EFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFK 336

Query: 121 KIAERGPIAVWRKPTNHLHCIQKL-KALKS-PTFCVKS-DPDAVWYTKMEPCVT-PLPMV 176
           K A++  IAVW+K ++   C  K+ K +++ P  C  S +PD+ WYT + PCV  P P  
Sbjct: 337 KYAQKDDIAVWQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTP-- 393

Query: 177 NEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF 236
            ++K    G++ KWP+RL+ AP RI  G + G +  S   D+  WK RV HY+ +L +L 
Sbjct: 394 -KVKKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALG 450

Query: 237 SGKFRNIMDMNAGLGGFAAALAKYPVWVMNAV 268
           + K RN+MDMN   GGF+AAL + P+WVMN V
Sbjct: 451 TDKIRNVMDMNTVYGGFSAALIEDPIWVMNVV 482

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/272 (46%), Positives = 179/272 (65%), Gaps = 10/272 (3%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           +D  ILT+S AP D HEAQVQFALERG+PA++G++ST +LP+PS SFD+AHCSRCL+PWT
Sbjct: 211 LDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWT 270

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            + G+YL+E+ R+LRPGG+WV+SGPP++++  ++GW+   ++ +     L+ L + +C+K
Sbjct: 271 EFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFK 330

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKS--PTFCVKS-DPDAVWYTKMEPC-VTPLPMV 176
             A++  IAVW+K  ++L C  KL       P  C  S +PD+ WYT + PC V P P  
Sbjct: 331 MYAKKDDIAVWQKSPDNL-CYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSP-- 387

Query: 177 NEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF 236
            ++K     +  KWP+RL+T P RI    + G     F  D+  WK R  HY+ +L ++ 
Sbjct: 388 -KLKKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPAIG 444

Query: 237 SGKFRNIMDMNAGLGGFAAALAKYPVWVMNAV 268
           S K RN+MDMN   GG AAAL   P+WVMN V
Sbjct: 445 SDKIRNVMDMNTAYGGLAAALVNDPLWVMNVV 476

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/276 (43%), Positives = 166/276 (60%), Gaps = 16/276 (5%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           +ILTMS AP DVH+ Q+QFALERG+PA +G+L T +LPYPSRSF+++HCSRC + W   D
Sbjct: 229 DILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRD 288

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           G+ L+E+DRVLRPGGY+  S P          + +D +DL+  +  +  L  R+CWK  A
Sbjct: 289 GILLLELDRVLRPGGYFAYSSP--------EAYAQDEEDLRIWR-EMSALVERMCWKIAA 339

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
           +R    +W+KP  +   +++    + P     +DPDAVW   ME C+T     +      
Sbjct: 340 KRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYS--DHDHKTK 397

Query: 184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILE-SLFSGKFRN 242
           G  L  WP RL + PPR+ + F  G +   F +D +LW++RV  Y  +L   + S   RN
Sbjct: 398 GSGLAPWPARLTSPPPRL-ADF--GYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVRN 454

Query: 243 IMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQ 278
           IMDM A +G FAAAL +  VWVMN VP D   NTL+
Sbjct: 455 IMDMKASMGSFAAALKEKDVWVMNVVPEDGP-NTLK 489

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
297745189	658	unnamed protein product [Vitis vinifera]	0.969	0.433	0.750	1e-132
255579400	603	S-adenosylmethionine-dependent methyltra	0.959	0.467	0.687	1e-120
147789281	735	hypothetical protein VITISV_003284 [Viti	0.931	0.372	0.702	1e-117
148906873	635	unknown [Picea sitchensis]	0.962	0.445	0.658	1e-115
224095734	537	predicted protein [Populus trichocarpa]	0.931	0.510	0.693	1e-115
148907610	626	unknown [Picea sitchensis]	0.931	0.437	0.638	1e-110
357501453	591	hypothetical protein MTR_7g006060 [Medic	0.969	0.482	0.615	1e-108
356524579	572	PREDICTED: probable methyltransferase PM	0.969	0.498	0.621	1e-108
356567298	575	PREDICTED: probable methyltransferase PM	0.969	0.495	0.615	1e-108
225426475	632	PREDICTED: probable methyltransferase PM	0.931	0.433	0.609	1e-106

>gi|297745189|emb|CBI39181.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/289 (75%), Positives = 259/289 (89%), Gaps = 4/289 (1%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           MDYNILTMS AP+D+HEAQVQFALERGLPAM+G+LSTY+LPYPSRSFD+AHCSRCLVPWT
Sbjct: 275 MDYNILTMSIAPMDIHEAQVQFALERGLPAMLGILSTYRLPYPSRSFDMAHCSRCLVPWT 334

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
           +YDG+YLMEIDRVLRPGGYWVVSGPPISWK+SY+GWER A+DL+KEQISLE+LA RLCWK
Sbjct: 335 AYDGVYLMEIDRVLRPGGYWVVSGPPISWKSSYKGWERKAQDLEKEQISLEDLARRLCWK 394

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
           KIAERGPIAVWRKPTNH+HCIQKLKA KSP FC ++DPDA WY +M+PC+TPLP V +I+
Sbjct: 395 KIAERGPIAVWRKPTNHIHCIQKLKAWKSPHFCAETDPDAGWYKEMDPCITPLPKVTDIR 454

Query: 181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
            ++GGALE+WPK LNTAPPRIR+G   G TV +FN+DNQ+W KRVS+Y  +L+SL +GK+
Sbjct: 455 SISGGALERWPKMLNTAPPRIRNGVTRGATVNTFNKDNQIWIKRVSYYGSVLKSLGAGKY 514

Query: 241 RNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSF 285
           RNIMDMNAGLGGFAAA++K  VWVMN VPFDA++NTL    + G++ ++
Sbjct: 515 RNIMDMNAGLGGFAAAISKQQVWVMNVVPFDAQNNTLGIVYERGLIGTY 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579400|ref|XP_002530544.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223529906|gb|EEF31835.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/288 (68%), Positives = 242/288 (84%), Gaps = 6/288 (2%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           M+YNILTMS AP D+HEAQVQFALERGLPAM+G+LS ++LP+PSRSFD+AHCSRCLV WT
Sbjct: 225 MNYNILTMSIAPRDIHEAQVQFALERGLPAMLGILSHHRLPFPSRSFDMAHCSRCLVQWT 284

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            YDGLYL+EIDRVLRPGGYWV+SGPPI+WK    GWER A+DL++EQ   E+LA RLCW+
Sbjct: 285 DYDGLYLIEIDRVLRPGGYWVLSGPPINWKAFSSGWERSAQDLKQEQNRFEDLARRLCWR 344

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
           K+ ERGP+AVW+KPTNH+HCI+K +  KSP+FC+  DPDA WY KMEPC+TPLP V +I 
Sbjct: 345 KVEERGPVAVWQKPTNHMHCIKKSRTWKSPSFCINDDPDAGWYKKMEPCITPLPNVTDIH 404

Query: 181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
           D++GGALEKWPKRLN APPRIRS   +GI+V+ +  DNQLWK+R+ HY  IL+SL  G++
Sbjct: 405 DISGGALEKWPKRLNIAPPRIRS---QGISVRVYEGDNQLWKRRLGHYEKILKSLSEGRY 461

Query: 241 RNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHN---TLQTGILSSF 285
           RNIMDMNAG+GGFAAAL KYPVWVMN VPFDAK+N     + G++ ++
Sbjct: 462 RNIMDMNAGIGGFAAALIKYPVWVMNCVPFDAKNNLSIVYERGLIGTY 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789281|emb|CAN62352.1| hypothetical protein VITISV_003284 [Vitis vinifera]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/289 (70%), Positives = 244/289 (84%), Gaps = 15/289 (5%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           MDYNILTMS AP+D+HEAQVQFALERGLPAM+G+LSTY+LPYPSRSFD+AHCSRCLVPWT
Sbjct: 363 MDYNILTMSIAPMDIHEAQVQFALERGLPAMLGILSTYRLPYPSRSFDMAHCSRCLVPWT 422

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
           +YDG+YLMEIDRVLRPGGYWVVSGPPISWK+SY+GWER A+DL+KEQISLE+LA RLCWK
Sbjct: 423 AYDGVYLMEIDRVLRPGGYWVVSGPPISWKSSYKGWERKAQDLEKEQISLEDLARRLCWK 482

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
           KIAERGPIAVWRKPTNH+HCIQKLKA KSP FC ++DPDA WY +M+PC+TPLP V +I+
Sbjct: 483 KIAERGPIAVWRKPTNHIHCIQKLKAWKSPHFCAETDPDAGWYKEMDPCITPLPKVTDIR 542

Query: 181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
            ++GGALE+WPK LNTAPPRIR+G   G TV +FN+DNQ+W KRVS+Y  +L+SL +G  
Sbjct: 543 SISGGALERWPKMLNTAPPRIRNGVTRGATVNTFNKDNQIWIKRVSYYGSVLKSLGAGLG 602

Query: 241 RNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSF 285
                        AAA++K  VWVMN VPFDA++NTL    + G++ ++
Sbjct: 603 GF-----------AAAISKQQVWVMNVVPFDAQNNTLGIVYERGLIGTY 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148906873|gb|ABR16582.1| unknown [Picea sitchensis]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/287 (65%), Positives = 232/287 (80%), Gaps = 4/287 (1%)

Query: 3   YNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY 62
           YNILTMSFAP+D+HEAQVQFALERGLPAM+G+L T +LPYP+R+FD+AHCSRCL+PWT Y
Sbjct: 243 YNILTMSFAPIDIHEAQVQFALERGLPAMIGILGTRRLPYPARAFDMAHCSRCLIPWTQY 302

Query: 63  DGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKI 122
           DGLYL+E+DRVLRPGGYW++SGPPI+WK  ++GWER  + L++EQ ++E+LA RLCWKKI
Sbjct: 303 DGLYLIEVDRVLRPGGYWILSGPPINWKNHHKGWERTVQSLKQEQEAIEDLAKRLCWKKI 362

Query: 123 AERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDV 182
           AE G IA+W+KPTNH+HCIQK K  K PTFC + + DA WY KME C+TPLP V  IKD+
Sbjct: 363 AEAGDIAIWKKPTNHIHCIQKRKIFKVPTFCQEDNADAAWYKKMETCITPLPKVKNIKDI 422

Query: 183 AGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRN 242
           AG ALEKWPKR+   PPRI    I GIT + FN+D +LW KR+ +YR  +E L  GK+ N
Sbjct: 423 AGMALEKWPKRVTAIPPRITMHTIPGITGELFNQDTKLWNKRLIYYRRFIERLTDGKYHN 482

Query: 243 IMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSF 285
           IMDMNAGLGGFAAALA Y VWVMN VP DAK+NTL    + G++ ++
Sbjct: 483 IMDMNAGLGGFAAALANYQVWVMNVVPADAKNNTLGIIYERGLIGTY 529

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095734|ref|XP_002310457.1| predicted protein [Populus trichocarpa] gi|222853360|gb|EEE90907.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/277 (69%), Positives = 231/277 (83%), Gaps = 3/277 (1%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           MDYNILTMS AP D HEAQ+QFALERG+PAM+G+LS ++LP+PSRSFD+AHC+RCLVPWT
Sbjct: 162 MDYNILTMSIAPSDKHEAQLQFALERGVPAMLGILSIHRLPFPSRSFDMAHCARCLVPWT 221

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            YDGLYLMEIDRVLRPGGYW+ SGPPI+WK +Y+G E  A++L++EQ  LE+LA RLCWK
Sbjct: 222 KYDGLYLMEIDRVLRPGGYWIFSGPPINWKANYKGSEVGAQELEQEQARLEDLAVRLCWK 281

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
           K+AE+G IAVWRKP NH+HCI K +  KS  FC+ SDPDA WY KM+PC+TPL  V +I 
Sbjct: 282 KVAEKGAIAVWRKPNNHIHCIIKSRIWKSSRFCINSDPDAGWYKKMKPCITPLLNVTDIH 341

Query: 181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
           D++GG+LEKW KRLN APPR +S   EGI+  +F  DNQLWK+RV HY IIL+SL  G++
Sbjct: 342 DISGGSLEKWSKRLNIAPPRTKS---EGISGAAFEGDNQLWKRRVRHYGIILKSLSRGRY 398

Query: 241 RNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           RNIMDMNAG+GGFAAAL +YPVWVMN VP+DAK N L
Sbjct: 399 RNIMDMNAGIGGFAAALTQYPVWVMNVVPYDAKQNNL 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907610|gb|ABR16934.1| unknown [Picea sitchensis]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 175/274 (63%), Positives = 225/274 (82%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           NILTMSFAP D HEAQVQFALERG+PAM+G++++ ++PYP+R+FD+AHCSRCL+PW  YD
Sbjct: 237 NILTMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRCLIPWKDYD 296

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           G+YL+E+DRVLRPGGYW++SGPP++WK  +RGWER  +DL++EQ ++E++A RLCWKK+ 
Sbjct: 297 GVYLIEVDRVLRPGGYWILSGPPVNWKKYHRGWERTPEDLKQEQDAIEDVAKRLCWKKVV 356

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
           E+G +A+W+KP NH+ C++     K P  C   +PDA WY KME C+TPLP VN+I  VA
Sbjct: 357 EKGDLAIWQKPMNHIDCVKSRNIYKVPHICKNDNPDAAWYRKMETCITPLPEVNDINAVA 416

Query: 184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
           GGALEKWPKR+   PPRIRSG I GIT ++FNED++LW  RV++Y+ ++  L  G++RNI
Sbjct: 417 GGALEKWPKRVTAVPPRIRSGSIPGITAENFNEDSKLWTDRVANYKRLIGQLGQGRYRNI 476

Query: 244 MDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           MDMNAGLGGFAAALA  PVWVMN VP DAKHNTL
Sbjct: 477 MDMNAGLGGFAAALANDPVWVMNVVPSDAKHNTL 510

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501453|ref|XP_003621015.1| hypothetical protein MTR_7g006060 [Medicago truncatula] gi|355496030|gb|AES77233.1| hypothetical protein MTR_7g006060 [Medicago truncatula]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/289 (61%), Positives = 230/289 (79%), Gaps = 4/289 (1%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           MDY+ILTMS AP D H+AQV FALERGLPAM+G+ ST++L +PS+SFDVAHCSRCLVPW 
Sbjct: 204 MDYDILTMSIAPSDEHDAQVMFALERGLPAMLGVFSTHRLTFPSKSFDVAHCSRCLVPWI 263

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
           + DGLYL EIDR+LRPGG+WV+SGPPI+W+ +Y+ W+ +   L+KEQ +LE LA ++CW+
Sbjct: 264 ANDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWQTEPTVLEKEQNNLEELAMQMCWE 323

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
           K+AE G IA+W+KP NH+ C+QKL  L SP FC  SD DA WYTKM  C+ PLP V +I 
Sbjct: 324 KVAEGGQIAIWQKPINHIKCMQKLNTLSSPKFCNSSDSDAGWYTKMTACIFPLPEVKDID 383

Query: 181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
           ++AGG LEKWP RLN +PPR+R    +  ++K+++EDN +WKKRVS+Y ++L+SL SGK+
Sbjct: 384 EIAGGVLEKWPIRLNDSPPRLRKENHDVFSLKTYSEDNMIWKKRVSYYEVMLKSLSSGKY 443

Query: 241 RNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSF 285
           RN+MDMNAG GGFAAAL KYPVWVMN VPFDAK N L    + G++ ++
Sbjct: 444 RNVMDMNAGFGGFAAALVKYPVWVMNVVPFDAKSNNLGIIYERGLIGTY 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524579|ref|XP_003530906.1| PREDICTED: probable methyltransferase PMT19-like [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/291 (62%), Positives = 234/291 (80%), Gaps = 6/291 (2%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           MDY+ILTMS AP D H++QVQFALERGLPA++G+LS ++L +PSRSFD+ HCSRCLVPWT
Sbjct: 187 MDYDILTMSLAPSDEHQSQVQFALERGLPALLGVLSIHRLTFPSRSFDMVHCSRCLVPWT 246

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            YDGLYL EIDR+LRPGG+WV+SGPPI+W+ +Y+ WE + K L+KEQ  LE+LA RLCW+
Sbjct: 247 DYDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWETEPKVLKKEQNILEDLAMRLCWE 306

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFC--VKSDPDAVWYTKMEPCVTPLPMVNE 178
           K+AER  IAVW+K  +H+ C+QKLK  +SP FC   +SDPDA WYTKM  C+ PLP V +
Sbjct: 307 KVAERDQIAVWQKHRDHISCMQKLKTRRSPKFCNSSESDPDAGWYTKMTACIFPLPDVKD 366

Query: 179 IKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSG 238
           + +V+GG LEKWP+RL T PPR+R+   +G  +K++ EDNQ WK+RVS+Y ++L+SL SG
Sbjct: 367 VHEVSGGVLEKWPERLETVPPRVRNENDDGFLLKTYIEDNQTWKRRVSNYGVLLKSLTSG 426

Query: 239 KFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSF 285
           K+RN+MDMNAG GGFAAA+ KYPVWVMN VPFDAK N L    + G++ ++
Sbjct: 427 KYRNVMDMNAGFGGFAAAIVKYPVWVMNVVPFDAKSNNLGIIYERGLIGTY 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567298|ref|XP_003551858.1| PREDICTED: probable methyltransferase PMT19-like [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/291 (61%), Positives = 233/291 (80%), Gaps = 6/291 (2%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           MDY ILTMS AP D H++QVQFALERGLPA++G+LS ++L +PSRSFD+ HCSRCLVPWT
Sbjct: 190 MDYGILTMSLAPSDEHQSQVQFALERGLPAILGVLSIHRLTFPSRSFDMVHCSRCLVPWT 249

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
            YDGLYL EIDR+LRPGG+WV+SGPPI+W+ +Y+ WE +  +L+KEQ +LE+LA +LCW+
Sbjct: 250 DYDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWETEPHELKKEQNTLEDLAMQLCWE 309

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFC--VKSDPDAVWYTKMEPCVTPLPMVNE 178
           K+AER  IAVW+K  +H+ C+QKLK  +SP FC   +SDPDA WYTKM  C+ PLP V +
Sbjct: 310 KVAERDQIAVWQKHIDHISCMQKLKTRRSPKFCNSSESDPDAGWYTKMTACIFPLPDVKD 369

Query: 179 IKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSG 238
           + +V+GG LEKWP RL T PPR+R+   +G T+K++ EDNQ WK+RVS+Y ++L+SL SG
Sbjct: 370 VHEVSGGVLEKWPMRLETVPPRVRNENDDGFTLKTYIEDNQTWKRRVSNYGVLLKSLSSG 429

Query: 239 KFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL----QTGILSSF 285
           K+RN+MDMNAG GGFAAA+ KYPVWVMN VPFD K N L    + G++ ++
Sbjct: 430 KYRNVMDMNAGFGGFAAAIVKYPVWVMNVVPFDVKSNNLGIIYERGLIGTY 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426475|ref|XP_002270920.1| PREDICTED: probable methyltransferase PMT18 [Vitis vinifera]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 167/274 (60%), Positives = 221/274 (80%)

Query: 4   NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
           +IL MSFAP D HEAQVQFALERG+PAM+G+L++ ++PYP+R+FD+AHCSRCL+PW +YD
Sbjct: 243 DILAMSFAPRDTHEAQVQFALERGVPAMIGILASQRMPYPARAFDMAHCSRCLIPWNAYD 302

Query: 64  GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
           GLYL+E+DRVLRPGGYW++SGPPI WK  +RGWER  +DL++EQ ++E++A RLCWKK+ 
Sbjct: 303 GLYLLEVDRVLRPGGYWILSGPPIRWKKYWRGWERTQEDLKQEQDAIEDVAMRLCWKKVF 362

Query: 124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
           E+G +AVW+KP NH+ C++  K +K+P  C   +PD  WY  ME C+TPLP V + ++VA
Sbjct: 363 EKGDLAVWQKPINHIRCVESRKLIKTPHICKSDNPDTAWYRDMETCITPLPDVRDSEEVA 422

Query: 184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
           GGALEKWPKR  + PPRI SG + GIT ++F EDN+LWK RV+HY+ I+  L  G++RN+
Sbjct: 423 GGALEKWPKRAFSIPPRINSGSLPGITAQNFQEDNELWKDRVAHYKQIIRGLHQGRYRNV 482

Query: 244 MDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           MDMNA LGGFAAAL KY VWVMN +P ++  +TL
Sbjct: 483 MDMNAYLGGFAAALLKYHVWVMNVIPANSNQDTL 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2041031	611	AT2G43200 [Arabidopsis thalian	0.928	0.446	0.577	7.3e-91
TAIR|locus:2196651	639	AT1G33170 [Arabidopsis thalian	0.928	0.427	0.561	4.6e-89
TAIR|locus:2127711	633	AT4G10440 [Arabidopsis thalian	0.928	0.431	0.556	5.9e-89
TAIR|locus:2050679	631	AT2G45750 [Arabidopsis thalian	0.931	0.434	0.555	2.5e-88
TAIR|locus:2117728	633	AT4G00750 [Arabidopsis thalian	0.942	0.437	0.542	2.3e-87
TAIR|locus:2202805	616	AT1G26850 [Arabidopsis thalian	0.928	0.443	0.525	2.2e-80
TAIR|locus:2141035	621	AT4G18030 [Arabidopsis thalian	0.914	0.433	0.503	5.9e-73
TAIR|locus:2034522	603	AT1G31850 [Arabidopsis thalian	0.891	0.434	0.455	2.2e-66
TAIR|locus:2134756	600	ERD3 "early-responsive to dehy	0.918	0.45	0.441	4.2e-63
TAIR|locus:2129660	608	AT4G14360 [Arabidopsis thalian	0.880	0.425	0.415	9.2e-52

TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 160/277 (57%), Positives = 205/277 (74%)

Query:     1 MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
             ++Y ILTMS AP D+HEAQVQFALERGLPAM+G+LSTY+LPYPSRSFD+ HCSRCLV WT
Sbjct:   232 LNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWT 291

Query:    61 SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
             SYDGLYLME+DRVLRP GYWV+SGPP++ +  ++  +RD+K+LQ +   L ++  RLCW+
Sbjct:   292 SYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWE 351

Query:   121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIK 180
             KIAE  P+ +WRKP+NHL C ++LKALK P  C  SDPDA WY +MEPC+TPLP VN+  
Sbjct:   352 KIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTN 411

Query:   181 DVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKF 240
                   L+ WP+RLN  P R+++G I+G T+  F  D  LW++RV +Y    + L +GK+
Sbjct:   412 KTV---LKNWPERLNHVP-RMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNGKY 467

Query:   241 RNIMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             RN++DMN           KYP+WVMN VPFD K NTL
Sbjct:   468 RNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTL 504

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 155/276 (56%), Positives = 200/276 (72%)

Query:     4 NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
             +I+ MSFAP D HEAQVQFALERG+PA++G++ + +LPYP+R+FD+AHCSRCL+PW   D
Sbjct:   253 DIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQND 312

Query:    64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
             GLYL E+DRVLRPGGYW++SGPPI+WK  ++GWER  +DL++EQ S+E+ A  LCWKK+ 
Sbjct:   313 GLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVT 372

Query:   124 ERGPIAVWRKPTNHLHCIQKLKAL-KSPTFCVKSD-PDAVWYTKMEPCVTPLPMVNEIKD 181
             E+G +++W+KP NH+ C  KLK + K+P  C KSD PD  WY  +E CVTPLP  N   +
Sbjct:   373 EKGDLSIWQKPINHVEC-NKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431

Query:   182 VAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFR 241
              AGGALE WP R    PPRI  G I  I  + F EDN++WK+R+S+Y+ I+  L  G+FR
Sbjct:   432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491

Query:   242 NIMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             NIMDMN           KYP WVMN VP DA+  TL
Sbjct:   492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTL 527

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 153/275 (55%), Positives = 200/275 (72%)

Query:     4 NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
             +I+ +SFAP D HEAQVQFALERG+PA++G++ + +LPYP+R+FD+AHCSRCL+PW   D
Sbjct:   236 DIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKND 295

Query:    64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
             GLYLME+DRVLRPGGYW++SGPPI+WK  +RGWER  +DL+KEQ S+E++A  LCWKK+ 
Sbjct:   296 GLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVT 355

Query:   124 ERGPIAVWRKPTNHLHCIQKLKAL-KSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDV 182
             E+G +++W+KP NH+ C +KLK   KSP  C   + D+ WY  +E C+TPLP  N   D 
Sbjct:   356 EKGDLSIWQKPLNHIEC-KKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414

Query:   183 AGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRN 242
             AGGALE WP R    PPRI  G I  +  + F EDN++WK+R++HY+ I+  L  G+FRN
Sbjct:   415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474

Query:   243 IMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             IMDMN           KYP WVMN VP DA+  TL
Sbjct:   475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTL 509

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 155/279 (55%), Positives = 204/279 (73%)

Query:     4 NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
             NI TMSFAP D HEAQVQFALERG+PAM+G+++T +LPYPSR+FD+AHCSRCL+PW   D
Sbjct:   230 NITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQND 289

Query:    64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
             G YLME+DRVLRPGGYW++SGPPI+W+  ++GWER   DL  EQ  +E +A  LCWKK+ 
Sbjct:   290 GAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVV 349

Query:   124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKS-DPDAVWYTKMEPCVTPLPMVNEIKD- 181
             +R  +A+W+KP NH+ C +  + LK+P FC    DPD  WYTKM+ C+TPLP V++ +D 
Sbjct:   350 QRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDL 409

Query:   182 --VAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF-SG 238
               VAGG +EKWP RLN  PPR+  G +E IT ++F E+ +LWK+RVS+Y+ +   L  +G
Sbjct:   410 KTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETG 469

Query:   239 KFRNIMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             ++RN++DMN             PVWVMN VP +AK NTL
Sbjct:   470 RYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTL 508

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 152/280 (54%), Positives = 206/280 (73%)

Query:     1 MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
             M  NI+TMSFAP D HEAQVQFALERG+PA++G+L++ +LP+P+R+FD+AHCSRCL+PW 
Sbjct:   236 MSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWG 295

Query:    61 SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
              Y+G YL+E+DRVLRPGGYW++SGPPI+W+  ++GWER   DL  EQ  +E +A  LCW+
Sbjct:   296 QYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWR 355

Query:   121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMV--NE 178
             K+ +R  +AVW+KPTNH+HC +   AL  P FC ++ P+  WYTK+E C+TPLP V  +E
Sbjct:   356 KLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSE 415

Query:   179 IKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF-S 237
             IK+VAGG L +WP+RLN  PPRI+SG +EGIT   F  + + W++RVS+Y+   + L  +
Sbjct:   416 IKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAET 475

Query:   238 GKFRNIMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             G++RN +DMN             PVWVMN VP +A  NTL
Sbjct:   476 GRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTL 515

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 144/274 (52%), Positives = 188/274 (68%)

Query:     4 NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
             N+  MSFAP D HEAQVQFALERG+PA++G+L T +LPYP+R+FD+AHCSRCL+PW + D
Sbjct:   229 NVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGAND 288

Query:    64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
             G+YLME+DRVLRPGGYW++SGPPI+WK +Y+ W+R  +DLQ+EQ  +E  A  LCW+K  
Sbjct:   289 GMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKY 348

Query:   124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
             E G IA+W+K  N   C  +    ++  FC   D D VWY KME C+TP P  +   +VA
Sbjct:   349 EHGEIAIWQKRVNDEACRSRQDDPRA-NFCKTDDTDDVWYKKMEACITPYPETSSSDEVA 407

Query:   184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
             GG L+ +P RLN  PPRI SG I G+TV ++ +DN+ WKK V  Y+ I   L +G++RNI
Sbjct:   408 GGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYRNI 467

Query:   244 MDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             MDMN              +WVMN VP  A+ N L
Sbjct:   468 MDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRL 501

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 138/274 (50%), Positives = 182/274 (66%)

Query:     4 NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
             N+LTMSFAP D HEAQVQFALERG+PA++ +L +  LPYP+R+FD+A CSRCL+PWT+ +
Sbjct:   228 NVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANE 287

Query:    64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
             G YLME+DRVLRPGGYWV+SGPPI+WKT ++ W R   +L  EQ  +E +A  LCW+K  
Sbjct:   288 GTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKY 347

Query:   124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVA 183
             E+G IA++RK  N   C +          C + D D VWY ++E CVTP P V+  ++VA
Sbjct:   348 EKGDIAIFRKKINDRSCDRSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVA 403

Query:   184 GGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNI 243
             GG L+K+P+RL   PP I  G I G+  +S+ ED  LWKKRV+ Y+ I   + S ++RN+
Sbjct:   404 GGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRNV 463

Query:   244 MDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             MDMN               WVMN +P   K NTL
Sbjct:   464 MDMNAGLGGFAAALESPKSWVMNVIPTINK-NTL 496

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 124/272 (45%), Positives = 183/272 (67%)

Query:     1 MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
             +D  IL++S AP D HEAQVQFALERG+PA++G++ST +LP+PS +FD+AHCSRCL+PWT
Sbjct:   217 LDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWT 276

Query:    61 SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
              + G+YL+EI R++RPGG+WV+SGPP+++   +RGW    +D + +   L++L T +C+K
Sbjct:   277 EFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFK 336

Query:   121 KIAERGPIAVWRKPTNHLHCIQKL-KALKS-PTFCVKS-DPDAVWYTKMEPCVT-PLPMV 176
             K A++  IAVW+K ++   C  K+ K +++ P  C  S +PD+ WYT + PCV  P P  
Sbjct:   337 KYAQKDDIAVWQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTP-- 393

Query:   177 NEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF 236
              ++K    G++ KWP+RL+ AP RI  G + G +  S   D+  WK RV HY+ +L +L 
Sbjct:   394 -KVKKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALG 450

Query:   237 SGKFRNIMDMNXXXXXXXXXXXKYPVWVMNAV 268
             + K RN+MDMN           + P+WVMN V
Sbjct:   451 TDKIRNVMDMNTVYGGFSAALIEDPIWVMNVV 482

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 124/281 (44%), Positives = 178/281 (63%)

Query:     1 MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
             +D  ILT+S AP D HEAQVQFALERG+PA++G++ST +LP+PS SFD+AHCSRCL+PWT
Sbjct:   211 LDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWT 270

Query:    61 SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
              + G+YL+E+ R+LRPGG+WV+SGPP++++  ++GW+   ++ +     L+ L + +C+K
Sbjct:   271 EFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFK 330

Query:   121 KIAERGPIAVWRKPTNHLHCIQKLKALKS--PTFCVKS-DPDAVWYTKMEPCVT-PLPMV 176
               A++  IAVW+K  ++L C  KL       P  C  S +PD+ WYT + PCV  P P +
Sbjct:   331 MYAKKDDIAVWQKSPDNL-CYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKL 389

Query:   177 NEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF 236
              +  D+   +  KWP+RL+T P RI    + G     F  D+  WK R  HY+ +L ++ 
Sbjct:   390 KKT-DLE--STPKWPERLHTTPERISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPAIG 444

Query:   237 SGKFRNIMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTL 277
             S K RN+MDMN             P+WVMN V   A  NTL
Sbjct:   445 SDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAA-NTL 484

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 115/277 (41%), Positives = 158/277 (57%)

Query:     4 NILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD 63
             +ILTMS AP DVH+ Q+QFALERG+PA +G+L T +LPYPSRSF+++HCSRC + W   D
Sbjct:   229 DILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRD 288

Query:    64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123
             G+ L+E+DRVLRPGGY+  S P          + +D +DL+  +  +  L  R+CWK  A
Sbjct:   289 GILLLELDRVLRPGGYFAYSSP--------EAYAQDEEDLRIWR-EMSALVERMCWKIAA 339

Query:   124 ERGPIAVWRKPTNHLHCIQKLKALKSPTFCVK-SDPDAVWYTKMEPCVTPLPMVNEIKDV 182
             +R    +W+KP  +  C  + +    P  C   +DPDAVW   ME C+T     +     
Sbjct:   340 KRNQTVIWQKPLTN-DCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYS--DHDHKT 396

Query:   183 AGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILES-LFSGKFR 241
              G  L  WP RL + PPR+ + F  G +   F +D +LW++RV  Y  +L   + S   R
Sbjct:   397 KGSGLAPWPARLTSPPPRL-ADF--GYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVR 453

Query:   242 NIMDMNXXXXXXXXXXXKYPVWVMNAVPFDAKHNTLQ 278
             NIMDM            +  VWVMN VP D   NTL+
Sbjct:   454 NIMDMKASMGSFAAALKEKDVWVMNVVPEDGP-NTLK 489

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	1e-143
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-06
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.003

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  413 bits (1063), Expect = e-143
 Identities = 158/279 (56%), Positives = 204/279 (73%), Gaps = 14/279 (5%)

Query: 1   MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT 60
           +  ++LTMSFAP DVHEAQVQFALERG+PAM+G+L T +LPYPSRSFD+AHCSRCL+PW 
Sbjct: 136 LSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPWH 195

Query: 61  SYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120
           + DG+ L+E+DRVLRPGGY+V+SGPP+        + RD +DLQ+E  ++E LA  LCWK
Sbjct: 196 ANDGILLLEVDRVLRPGGYFVLSGPPV--------YARDEEDLQEEWKAMEALAKSLCWK 247

Query: 121 KIAERGPIAVWRKPTNHLHCIQKLKALKSPTFC-VKSDPDAVWYTKMEPCVTPLPMVNEI 179
            +A++G IA+W+KP N+  C  K +  K P  C    DPDA WY  ME C+TPLP V+  
Sbjct: 248 LVAKKGDIAIWQKPVNN-SCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSH- 305

Query: 180 KDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLF-SG 238
            +V GG LEKWP+RL   PPR+ SG I G++ ++F  D +LWK+RVS Y+ +L+ L   G
Sbjct: 306 -EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKG 364

Query: 239 KFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTL 277
           + RN+MDMNAG GGFAAAL   PVWVMN VP D+  +TL
Sbjct: 365 RVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSP-DTL 402

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 13 LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR 72
          +D+    +  A +R     V +     LP+P  SFDV   S  L          L EI R
Sbjct: 25 VDLSPEMLALARKRAPRKFV-VGDAEDLPFPDESFDVVVSSLVL-HHLPDPERALREIAR 82

Query: 73 VLRPGGY 79
          VL+PGG 
Sbjct: 83 VLKPGGK 89

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 39  QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82
            LP+P  SFD    S  L   T  D   L E+ RVL+PGG  +V
Sbjct: 112 NLPFPDNSFDAVTISFGLRNVTDID-KALKEMYRVLKPGGRLLV 154

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.49
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.39
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.33
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.32
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.21
KOG4300	252	consensus Predicted methyltransferase [General fun	99.19
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.06
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.0
PRK05785	226	hypothetical protein; Provisional	98.87
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.86
PLN02244	340	tocopherol O-methyltransferase	98.86
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.78
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.74
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.73
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.73
PLN02490	340	MPBQ/MSBQ methyltransferase	98.71
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.68
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.66
PLN02336	475	phosphoethanolamine N-methyltransferase	98.66
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.64
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.64
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.63
PRK08317	241	hypothetical protein; Provisional	98.61
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.54
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.53
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.51
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.45
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.44
PRK11207	197	tellurite resistance protein TehB; Provisional	98.44
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.42
PRK06922	677	hypothetical protein; Provisional	98.42
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.41
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.4
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.39
KOG3010	261	consensus Methyltransferase [General function pred	98.39
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.37
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.35
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.35
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.26
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.26
PRK06202	232	hypothetical protein; Provisional	98.22
PRK12335	287	tellurite resistance protein TehB; Provisional	98.21
PLN02336	475	phosphoethanolamine N-methyltransferase	98.21
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.18
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.17
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.11
KOG2940	325	consensus Predicted methyltransferase [General fun	98.08
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.08
PLN03075	296	nicotianamine synthase; Provisional	98.03
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.01
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.94
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.93
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.92
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.91
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.87
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.79
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.79
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.79
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.78
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.78
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.77
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.75
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.71
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.71
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.7
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.65
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.64
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.62
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.6
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.6
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.58
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.58
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.57
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.56
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.52
TIGR03438	301	probable methyltransferase. This model represents	97.51
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.51
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.49
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.44
PRK04266	226	fibrillarin; Provisional	97.42
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.42
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.4
PRK14967	223	putative methyltransferase; Provisional	97.39
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.39
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.32
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.29
PRK14968	188	putative methyltransferase; Provisional	97.29
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.27
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.23
KOG1331	293	consensus Predicted methyltransferase [General fun	97.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.22
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.21
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.19
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.19
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.18
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.15
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.14
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.12
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.12
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.1
PTZ00146	293	fibrillarin; Provisional	97.08
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.07
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.01
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.0
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.96
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.94
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.9
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.9
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.86
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.82
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.8
KOG2361	264	consensus Predicted methyltransferase [General fun	96.78
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.7
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.54
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.54
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.53
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.46
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.44
TIGR00438	188	rrmJ cell division protein FtsJ.	96.44
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.39
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.38
PRK00811	283	spermidine synthase; Provisional	96.38
PRK07402	196	precorrin-6B methylase; Provisional	96.37
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.32
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.07
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.95
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.94
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.89
PHA03411	279	putative methyltransferase; Provisional	95.88
PRK04457	262	spermidine synthase; Provisional	95.86
PRK03612	521	spermidine synthase; Provisional	95.67
PRK01581	374	speE spermidine synthase; Validated	95.61
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.6
COG2521	287	Predicted archaeal methyltransferase [General func	95.57
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.53
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.43
KOG1271	227	consensus Methyltransferases [General function pre	95.36
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.35
PRK13699	227	putative methylase; Provisional	95.28
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	94.93
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.83
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.79
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.76
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.75
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.71
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.63
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	94.47
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.11
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.05
PHA03412	241	putative methyltransferase; Provisional	93.9
COG4123	248	Predicted O-methyltransferase [General function pr	93.88
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	93.47
PLN02366	308	spermidine synthase	93.14
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	92.84
COG4122	219	Predicted O-methyltransferase [General function pr	92.78
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.76
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	92.68
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	92.4
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	91.93
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	91.76
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	91.48
PRK11524	284	putative methyltransferase; Provisional	91.46
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	90.42
PRK00536	262	speE spermidine synthase; Provisional	90.22
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	90.11
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	89.81
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	89.77
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	89.6
KOG2899	288	consensus Predicted methyltransferase [General fun	89.59
PLN02823	336	spermine synthase	89.06
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	88.7
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	88.56
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	88.41
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	88.08
PLN02476	278	O-methyltransferase	87.2
COG4798	238	Predicted methyltransferase [General function pred	86.2
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	85.83
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	85.3
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	85.17
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	84.55
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	84.17
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	83.33
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	82.21
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	82.16
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	81.88
PLN02589	247	caffeoyl-CoA O-methyltransferase	81.78
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	81.52
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	81.37

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=4.5e-91  Score=680.11  Aligned_cols=271  Identities=58%  Similarity=1.077  Sum_probs=259.5

Q ss_pred             CCCCceeeeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            1 MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         1 ~~~~v~t~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ++|||+|||+||.|.++.++|+|.|||+++.+.+.++++||||+++||+|||++|+++|+.+.+.+|.|++|||||||||
T Consensus       136 ~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyf  215 (506)
T PF03141_consen  136 LERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYF  215 (506)
T ss_pred             hhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceE
Confidence            57999999999999999999999999999999888999999999999999999999999999889999999999999999


Q ss_pred             EEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCCCchhhhhhhcCCCCCCCC-CCCCC
Q 041513           81 VVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCV-KSDPD  159 (294)
Q Consensus        81 vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~~~~C~~~r~~~~~~~~C~-~~~~d  159 (294)
                      ++|+||++        ++++++++++|++|++++++|||++++++++++|||||.+| +||.+|+..+.|++|+ ++|||
T Consensus       216 v~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd  286 (506)
T PF03141_consen  216 VLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPD  286 (506)
T ss_pred             EecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCc
Confidence            99999997        35677889999999999999999999999999999999997 9999999889999999 88999


Q ss_pred             ccccccCccccccCCCCcccccccCCCCcCCcccccCCCCcccccccccccchhhhhhHHHHHHHHHHHHHhhh-cCCCC
Q 041513          160 AVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILE-SLFSG  238 (294)
Q Consensus       160 ~~wy~~~~~ci~~~~~~~~~~~~~~~~~~~wp~Rl~~~p~r~~~~~~~g~~~~~f~~D~~~W~~~v~~Y~~~~~-~~~~~  238 (294)
                      ++||++|++||||+|++++  +.+++++++||+||+++|+||++|++.|+++|+|++||++||++|++||+++. .|+++
T Consensus       287 ~aWY~~l~~Cit~~p~~~~--~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~  364 (506)
T PF03141_consen  287 AAWYVPLEACITPLPEVSS--EIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWG  364 (506)
T ss_pred             chhhcchhhhcCcCCcccc--cccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            9999999999999998754  78899999999999999999999999999999999999999999999999887 79999


Q ss_pred             CcceeeccccCcchhHhhhcCCCceEEEecCCCCCCCCccceEec
Q 041513          239 KFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILS  283 (294)
Q Consensus       239 ~~RNvmDMnA~~GGFAAAl~~~~vWVMNVvP~~~~~~tL~v~~~~  283 (294)
                      +||||||||||||||||||+++|||||||||+.++ |||||||--
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~-ntL~vIydR  408 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGP-NTLPVIYDR  408 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCCceEEEecccCCC-Ccchhhhhc
Confidence            99999999999999999999999999999999887 999999853

; GO: 0008168 methyltransferase activity

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.49  E-value=3.6e-14  Score=129.82  Aligned_cols=77  Identities=30%  Similarity=0.321  Sum_probs=68.1

Q ss_pred             eeeeccCCCcHHHHHHHHHcCCC-----cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            7 TMSFAPLDVHEAQVQFALERGLP-----AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~ergv~-----~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      +-.+.+.|+|++||+.|++|..+     +.+.+++++.|||+|++||+|.++++| +...+...+|+|+.|||||||+++
T Consensus        75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl-rnv~d~~~aL~E~~RVlKpgG~~~  153 (238)
T COG2226          75 TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL-RNVTDIDKALKEMYRVLKPGGRLL  153 (238)
T ss_pred             CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh-hcCCCHHHHHHHHHHhhcCCeEEE
Confidence            45678889999999999998543     677889999999999999999999999 555678899999999999999999


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +.+
T Consensus       154 vle  156 (238)
T COG2226         154 VLE  156 (238)
T ss_pred             EEE
Confidence            876

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.39  E-value=2.9e-13  Score=103.01  Aligned_cols=74  Identities=31%  Similarity=0.390  Sum_probs=61.8

Q ss_pred             eeeccCCCcHHHHHHHHHcCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFALERGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .++...|+|++|++.|+++..  ...+...+.+.+||++++||+|++..+++|+ +++..+++|+.|+|||||+++|
T Consensus        20 ~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   20 ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHHHHHHHHHHHcCcCeEEeC
Confidence            467788999999999999753  3447778999999999999999999999555 7788999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.33  E-value=1.2e-12  Score=119.50  Aligned_cols=75  Identities=28%  Similarity=0.364  Sum_probs=58.4

Q ss_pred             eeccCCCcHHHHHHHHHcC----C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG----L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|++|++.|+++.    . ++.+.++|++.|||++++||+|+|++++++ ..+...+|+|++|||||||+|++.
T Consensus        74 ~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn-~~d~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen   74 KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN-FPDRERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG--SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh-hCCHHHHHHHHHHHcCCCeEEEEe
Confidence            5677899999999999762    2 677888999999999999999999999954 557779999999999999999997


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      +
T Consensus       153 e  153 (233)
T PF01209_consen  153 E  153 (233)
T ss_dssp             E
T ss_pred             e
Confidence            6

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.32  E-value=3.3e-12  Score=109.63  Aligned_cols=72  Identities=22%  Similarity=0.158  Sum_probs=62.7

Q ss_pred             cCCCcHHHHHHHHHcC--------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513           12 PLDVHEAQVQFALERG--------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        12 p~D~S~~mlq~A~erg--------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      +.|+|++||+.|+++.        ..+.+.+++++.+|+++++||+|++++++ |+..++..+|+|++|+|||||+|++.
T Consensus         2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            5799999999997642        13677888999999999999999999999 55567889999999999999999987


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus        81 d   81 (160)
T PLN02232         81 D   81 (160)
T ss_pred             E
Confidence            5

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.21  E-value=2.7e-11  Score=111.95  Aligned_cols=75  Identities=21%  Similarity=0.139  Sum_probs=65.0

Q ss_pred             eeccCCCcHHHHHHHHHcC--------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALERG--------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+|++|++.|+++.        ..+.+.+++++.+||++++||+|+++++++ +.+++..+++|+.|+|||||+|
T Consensus       100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l  178 (261)
T PLN02233        100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLR-NVVDRLKAMQEMYRVLKPGSRV  178 (261)
T ss_pred             EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccc-cCCCHHHHHHHHHHHcCcCcEE
Confidence            5678899999999998652        145677789999999999999999999994 5567889999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++..
T Consensus       179 ~i~d  182 (261)
T PLN02233        179 SILD  182 (261)
T ss_pred             EEEE
Confidence            9986

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.19  E-value=2.2e-11  Score=108.83  Aligned_cols=112  Identities=23%  Similarity=0.320  Sum_probs=84.0

Q ss_pred             eeccCCCcHHHHHHHHHcC-----CCcE-EEEccCCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALERG-----LPAM-VGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg-----v~~~-~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ++.-+|.++.|-++|.++.     .... +.+++.++|| ++++|+|+|+|.+||| -+.++.+.|.|+.|+|||||+++
T Consensus       101 svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC-Sve~~~k~L~e~~rlLRpgG~ii  179 (252)
T KOG4300|consen  101 SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC-SVEDPVKQLNEVRRLLRPGGRII  179 (252)
T ss_pred             eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe-ccCCHHHHHHHHHHhcCCCcEEE
Confidence            5667799999999986542     3344 6778899999 9999999999999995 46788899999999999999999


Q ss_pred             EEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCCCchhhhhhhcCCC
Q 041513           82 VSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKS  149 (294)
Q Consensus        82 is~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~~~~C~~~r~~~~~  149 (294)
                      +.+|...   .+.-|.      +-+|..++                 +.|+--.+  ||+.+|++.+.
T Consensus       180 fiEHva~---~y~~~n------~i~q~v~e-----------------p~~~~~~d--GC~ltrd~~e~  219 (252)
T KOG4300|consen  180 FIEHVAG---EYGFWN------RILQQVAE-----------------PLWHLESD--GCVLTRDTGEL  219 (252)
T ss_pred             EEecccc---cchHHH------HHHHHHhc-----------------hhhheecc--ceEEehhHHHH
Confidence            9998421   111121      11222232                 67876665  99999987654

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.06  E-value=2.9e-10  Score=104.53  Aligned_cols=74  Identities=24%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             eccCCCcHHHHHHHHHcC----CC----cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513           10 FAPLDVHEAQVQFALERG----LP----AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg----v~----~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      +.-.|++++||..+++|.    +.    ..+..+|++.|||+|++||+.+.++.+.+|. +++++|+|.+|||||||+|.
T Consensus       133 V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~  211 (296)
T KOG1540|consen  133 VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFS  211 (296)
T ss_pred             EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEE
Confidence            334599999999998764    21    4566679999999999999999999997776 56699999999999999999


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       212 cLe  214 (296)
T KOG1540|consen  212 CLE  214 (296)
T ss_pred             EEE
Confidence            876

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.00  E-value=7.2e-10  Score=100.87  Aligned_cols=76  Identities=22%  Similarity=0.307  Sum_probs=67.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+...|+|++|++.|+++.....+.++|.+.+|+++++||+|+++.++ ||..++..++.|+.|+|||||+|+++..
T Consensus        66 ~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258         66 QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            466779999999999988654556778899999999999999999999 8888898999999999999999999874

>PRK05785 hypothetical protein; Provisional

Probab=98.87  E-value=5.2e-09  Score=94.84  Aligned_cols=67  Identities=25%  Similarity=0.198  Sum_probs=57.7

Q ss_pred             eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513            8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      ..+.+.|+|++|++.|+++.   .+.+++++.+||++++||+|+|++++ |+.+++..+++|+.|||||.+
T Consensus        75 ~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l-~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785         75 YYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFAL-HASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChh-hccCCHHHHHHHHHHHhcCce
Confidence            36788999999999998864   24567899999999999999999999 556678899999999999954

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.86  E-value=4e-09  Score=96.50  Aligned_cols=74  Identities=24%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ..+.+.|+|+.|++.|+++++  .+.++|.+.++ ++++||+|+|+.++ ||..++..+++++.|+|||||+|++..+
T Consensus        54 ~~v~gvD~s~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         54 AVIEALDSSPEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAAL-QWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             CEEEEEECCHHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhh-hhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            357788999999999998764  45567777774 67899999999999 6677888999999999999999999864

>PLN02244 tocopherol O-methyltransferase

Probab=98.86  E-value=5.9e-09  Score=99.88  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=65.3

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+.+.|+|+.|++.|+++    ++  .+.+.++|+..+||++++||+|+|..+++|+ .+...+++|+.|+|||||+|+
T Consensus       142 ~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lv  220 (340)
T PLN02244        142 ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRII  220 (340)
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEE
Confidence            3567789999999998764    33  4677888999999999999999999999665 466699999999999999999


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      ++.
T Consensus       221 i~~  223 (340)
T PLN02244        221 IVT  223 (340)
T ss_pred             EEE
Confidence            976

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.80  E-value=8.4e-09  Score=95.42  Aligned_cols=77  Identities=14%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+|+.|++.|+++..   .+.+...+...+||++++||+|++..+++|+. .+...+++++.|+|||||+|+++.
T Consensus        77 ~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098         77 HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            57788999999999998642   36666778888999999999999998887775 366789999999999999999987


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      .
T Consensus       157 ~  157 (263)
T PTZ00098        157 Y  157 (263)
T ss_pred             e
Confidence            4

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.78  E-value=6.4e-09  Score=99.27  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             eeccCCCcHHHHHHHHHcC----C--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG----L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.++|+|++|++.|+++.    .  .+.+.+.+++.+|+++++||+|+|..+++|+ .++..+++++.|+|||||.|++
T Consensus       155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv-~d~~~~L~~l~r~LkPGG~lii  233 (322)
T PLN02396        155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV-ANPAEFCKSLSALTIPNGATVL  233 (322)
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc-CCHHHHHHHHHHHcCCCcEEEE
Confidence            5778899999999998652    1  4567777888999999999999999999665 5677999999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +..
T Consensus       234 st~  236 (322)
T PLN02396        234 STI  236 (322)
T ss_pred             EEC
Confidence            874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.74  E-value=2.7e-08  Score=90.72  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=63.8

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+...|...++ ++++||+|+|+.++ ||..+...+++++.|+|||||+|++..+
T Consensus        57 ~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         57 RITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             EEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            567789999999999987655677777776664 56799999999999 7777888999999999999999999864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.73  E-value=2.8e-08  Score=91.58  Aligned_cols=76  Identities=22%  Similarity=0.250  Sum_probs=64.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|++++|++.|+++    ++ .+.+...+.+.+|+++++||+|++..++ |+..+...+++|+.|+|||||+|+++
T Consensus       104 ~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~-~~~~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        104 KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI-NLSPDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc-cCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence            467789999999999875    33 4556677888999999999999999888 55666778999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       183 ~~  184 (272)
T PRK11873        183 DV  184 (272)
T ss_pred             Ee
Confidence            63

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.73  E-value=2.2e-08  Score=92.76  Aligned_cols=70  Identities=23%  Similarity=0.365  Sum_probs=60.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      .+.+.|+|++|++.|+++...+.+.+++...+||++++||+|++.++-        ..++|+.|+|||||+|++..+.
T Consensus       114 ~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        114 QLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             eEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCC
Confidence            578899999999999988767788888999999999999999986542        3578999999999999998763

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.71  E-value=3.3e-08  Score=95.09  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=80.7

Q ss_pred             eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC-
Q 041513            9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP-   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p-   85 (294)
                      .+...|.|++|++.|+++.  ..+.+..++.+.+||++++||+|+++.+++|+ .++..+|+|+.|+|||||++++..+ 
T Consensus       139 ~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~-~d~~~~L~e~~rvLkPGG~LvIi~~~  217 (340)
T PLN02490        139 NVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW-PDPQRGIKEAYRVLKIGGKACLIGPV  217 (340)
T ss_pred             EEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4567899999999998863  24556678889999999999999999999554 5667899999999999999988763 


Q ss_pred             -CCCccccCC--CcccChHHHHHHHHHHHHHHHhhceEeeecccceeEe
Q 041513           86 -PISWKTSYR--GWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVW  131 (294)
Q Consensus        86 -p~~~~~~~~--~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw  131 (294)
                       +..|..++.  .|...     ...+++.++++..+++.+....-.+.|
T Consensus       218 ~p~~~~~r~~~~~~~~~-----~t~eEl~~lL~~aGF~~V~i~~i~~~~  261 (340)
T PLN02490        218 HPTFWLSRFFADVWMLF-----PKEEEYIEWFTKAGFKDVKLKRIGPKW  261 (340)
T ss_pred             CcchhHHHHhhhhhccC-----CCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence             222221100  01100     012456667777788776544333333

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.68  E-value=3e-08  Score=91.92  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=63.5

Q ss_pred             eeeeccCCCcHHHHHHHHHcC--------C------------------------CcEEEEccCCCCCCCCCcccEEEecC
Q 041513            7 TMSFAPLDVHEAQVQFALERG--------L------------------------PAMVGLLSTYQLPYPSRSFDVAHCSR   54 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~erg--------v------------------------~~~~~v~d~~~LPfpd~sFD~V~~s~   54 (294)
                      ...|.+.|+|+.||+.|++.-        +                        .+.+.+.+....+++++.||+|+|..
T Consensus       132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn  211 (264)
T smart00138      132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN  211 (264)
T ss_pred             CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence            457889999999999998742        1                        24566778888888899999999999


Q ss_pred             cCccccc-ChHHHHHHHHhccCCCcEEEEEc
Q 041513           55 CLVPWTS-YDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        55 ~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +++|+.+ +...+++++.|+|||||+|++..
T Consensus       212 vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      212 VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            9976642 23469999999999999999964

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.66  E-value=5.4e-08  Score=86.27  Aligned_cols=76  Identities=26%  Similarity=0.324  Sum_probs=65.6

Q ss_pred             eeccCCCcHHHHHHHHHcCC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+...|+++++++.++++.. .+.+...+...+|+++++||+|++..++ |+..++..++.++.|+|||||.++++.+
T Consensus        60 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        60 EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            35778999999999988653 3566678888999999999999999999 6677788999999999999999999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.66  E-value=6.2e-08  Score=96.21  Aligned_cols=77  Identities=22%  Similarity=0.329  Sum_probs=65.6

Q ss_pred             eeeccCCCcHHHHHHHHHcC--C--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            8 MSFAPLDVHEAQVQFALERG--L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg--v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      ..+.+.|+|++|++.|+++.  .  .+.+.++|...+++++++||+|+|..+++|+ .++..+++|+.|+|||||.|+++
T Consensus       290 ~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        290 VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence            35778899999999998752  2  4567778888899999999999999999665 56779999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       369 ~~  370 (475)
T PLN02336        369 DY  370 (475)
T ss_pred             Ee
Confidence            74

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.64  E-value=1.1e-08  Score=80.31  Aligned_cols=72  Identities=25%  Similarity=0.358  Sum_probs=58.9

Q ss_pred             eeeeccCCCcHHHHHHHHHcC----CCcEEEEccCCCCCCCCCcccEEEecCc-CcccccC-hHHHHHHHHhccCCCc
Q 041513            7 TMSFAPLDVHEAQVQFALERG----LPAMVGLLSTYQLPYPSRSFDVAHCSRC-LVPWTSY-DGLYLMEIDRVLRPGG   78 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~~LPfpd~sFD~V~~s~~-l~h~~~d-~~~~L~Ei~RVLKPGG   78 (294)
                      ...+.+.|+|++||+.|+++.    .++.+.++|...+++.+++||+|+|+.+ ++|+.++ ...+++++.++|||||
T Consensus        24 ~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   24 SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            367788899999999998865    6889999999999999999999999766 7664432 3469999999999998

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.64  E-value=6.4e-08  Score=86.67  Aligned_cols=76  Identities=25%  Similarity=0.277  Sum_probs=63.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|++|++.|+++    +. .+.+...+...+++++++||+|++..++ |+..+...+++|+.|+|||||++++.
T Consensus        72 ~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l-~~~~~~~~~l~~~~~~Lk~gG~l~~~  150 (231)
T TIGR02752        72 HVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL-RNVPDYMQVLREMYRVVKPGGKVVCL  150 (231)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc-ccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            567789999999999865    23 3566677888899999999999999999 55667779999999999999999987


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       151 ~~  152 (231)
T TIGR02752       151 ET  152 (231)
T ss_pred             EC
Confidence            63

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.63  E-value=3.6e-08  Score=90.26  Aligned_cols=76  Identities=18%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCC-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQL-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+|++|++.|+++    ++  .+.+.+++.+.+ ++++++||+|+|..++ |+..++..++.++.|+|||||+++
T Consensus        68 ~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl-~~~~~~~~~l~~~~~~LkpgG~l~  146 (255)
T PRK11036         68 QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL-EWVADPKSVLQTLWSVLRPGGALS  146 (255)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH-HhhCCHHHHHHHHHHHcCCCeEEE
Confidence            566789999999999875    33  345666777666 4778999999999999 566678799999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       147 i~~~  150 (255)
T PRK11036        147 LMFY  150 (255)
T ss_pred             EEEE
Confidence            8753

>PRK08317 hypothetical protein; Provisional

Probab=98.61  E-value=1.2e-07  Score=83.88  Aligned_cols=76  Identities=36%  Similarity=0.419  Sum_probs=64.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+|+.+++.|+++    +..+.+...+.+.+|+++++||+|++..+++| ..++..+++++.++|||||++++..
T Consensus        46 ~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         46 RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQH-LEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhc-cCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            567789999999999886    23456667788888999999999999999955 5577799999999999999999987


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      +
T Consensus       125 ~  125 (241)
T PRK08317        125 T  125 (241)
T ss_pred             c
Confidence            5

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.54  E-value=4e-08  Score=81.85  Aligned_cols=72  Identities=26%  Similarity=0.524  Sum_probs=57.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      .+.+.|+|+.|++.     ........+....++++++||+|+|..+++| ..++..+|+++.|+|||||+++++.+.
T Consensus        46 ~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   46 EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            56778999999887     2233333344566778999999999999955 557889999999999999999999863

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.53  E-value=1.4e-07  Score=79.53  Aligned_cols=75  Identities=27%  Similarity=0.402  Sum_probs=64.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC--CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|++|++.|+++    +++ +.+.+.+...++  ++ +.||+|++..++ |+..++..+++++.|+||+||.++
T Consensus        30 ~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i  107 (152)
T PF13847_consen   30 KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL-HHFPDPEKVLKNIIRLLKPGGILI  107 (152)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG-GGTSHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch-hhccCHHHHHHHHHHHcCCCcEEE
Confidence            367789999999999873    554 778888888888  77 899999999999 666677789999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      ++..
T Consensus       108 ~~~~  111 (152)
T PF13847_consen  108 ISDP  111 (152)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9875

...

>TIGR00740 methyltransferase, putative

Probab=98.51  E-value=1.9e-07  Score=84.56  Aligned_cols=76  Identities=14%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             eeeccCCCcHHHHHHHHHc----C--CCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALER----G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..+.+.|+|++|++.|+++    +  ..+.+.+++...++++  .+|+|+|+++++|+.+ +...+++++.|+|||||.|
T Consensus        80 ~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l  157 (239)
T TIGR00740        80 VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL  157 (239)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence            3577889999999999875    1  2456777888888876  4899999999955432 3457999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++.+
T Consensus       158 ~i~d~  162 (239)
T TIGR00740       158 VLSEK  162 (239)
T ss_pred             EEeec
Confidence            99975

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.45  E-value=1.4e-07  Score=86.36  Aligned_cols=78  Identities=21%  Similarity=0.286  Sum_probs=65.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      -++.+.|+|+.+|+.|+.+    ++.+.+....++.|-...++||+|+|..+++|. +++..+++++.+.+||||.+++|
T Consensus        82 a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227          82 ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-PDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-CCHHHHHHHHHHHcCCCcEEEEe
Confidence            4677889999999999854    455556666778887777999999999999775 57779999999999999999999


Q ss_pred             cCC
Q 041513           84 GPP   86 (294)
Q Consensus        84 ~pp   86 (294)
                      ...
T Consensus       161 Tin  163 (243)
T COG2227         161 TIN  163 (243)
T ss_pred             ccc
Confidence            864

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.44  E-value=3e-07  Score=84.07  Aligned_cols=76  Identities=17%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..+.+.|+|+.|++.|+++    +.  .+.+.+++...+|++  .+|+|+++.+++|..++ ...+++++.|+|||||.|
T Consensus        83 ~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l  160 (247)
T PRK15451         83 CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL  160 (247)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEE
Confidence            3577889999999999876    22  466777788888875  49999999999554322 246999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++..
T Consensus       161 ~l~e~  165 (247)
T PRK15451        161 VLSEK  165 (247)
T ss_pred             EEEEe
Confidence            99874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.44  E-value=4.6e-07  Score=80.23  Aligned_cols=74  Identities=14%  Similarity=0.218  Sum_probs=56.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    ++. +.+.+.+...++++ ++||+|+|+.+++|... +...+++++.|+|||||++++
T Consensus        54 ~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         54 DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            567779999999998763    343 55666777777775 57999999999944332 345799999999999999665


Q ss_pred             E
Q 041513           83 S   83 (294)
Q Consensus        83 s   83 (294)
                      .
T Consensus       133 ~  133 (197)
T PRK11207        133 V  133 (197)
T ss_pred             E
Confidence            4

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.42  E-value=5.9e-07  Score=85.70  Aligned_cols=74  Identities=20%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             eeccCCCcHHHHHHHHH--c----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALE--R----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~e--r----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|+..++.  +    ..++.+..++.+.+|+ +++||+|+|..+++| ..++..+|+++.|+|||||.|++
T Consensus       147 ~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H-~~dp~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        147 LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH-RRSPLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc-cCCHHHHHHHHHHhcCCCcEEEE
Confidence            37788999999876432  2    2246677788899999 889999999999965 46777999999999999999998


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       225 ~~  226 (322)
T PRK15068        225 ET  226 (322)
T ss_pred             EE
Confidence            64

>PRK06922 hypothetical protein; Provisional

Probab=98.42  E-value=3.1e-07  Score=94.55  Aligned_cols=78  Identities=19%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC--CCCCcccEEEecCcCcccc------------cChHHHHHH
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWT------------SYDGLYLME   69 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~------------~d~~~~L~E   69 (294)
                      ..+.+.|+|+.|++.|+++    +.+..+.++|...+|  |++++||+|+++.+++|+.            .+...+|++
T Consensus       443 ~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLre  522 (677)
T PRK06922        443 KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQS  522 (677)
T ss_pred             CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHH
Confidence            4677889999999999875    234556667877888  8999999999999996552            234579999


Q ss_pred             HHhccCCCcEEEEEcC
Q 041513           70 IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        70 i~RVLKPGG~~vis~p   85 (294)
                      +.|+|||||++++...
T Consensus       523 I~RVLKPGGrLII~D~  538 (677)
T PRK06922        523 AYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHHcCCCcEEEEEeC
Confidence            9999999999999864

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.41  E-value=5.2e-07  Score=79.71  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=57.2

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      ..+.+.|+|+.|++.|+++    ++++...+.+....+++ ++||+|+|+.+++|+.. +...+++++.|+|||||++++
T Consensus        53 ~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        53 YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            3577789999999988653    55655556666666665 57999999999955532 335799999999999999666


Q ss_pred             E
Q 041513           83 S   83 (294)
Q Consensus        83 s   83 (294)
                      .
T Consensus       132 ~  132 (195)
T TIGR00477       132 V  132 (195)
T ss_pred             E
Confidence            4

Part of a tellurite-reducing operon tehA and tehB

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.40  E-value=5.5e-07  Score=80.26  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++|++.|+++    ++  .+.+...|....|++ ++||+|++..+++|. .+...+++++.|+|||||++++
T Consensus        25 ~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i  102 (224)
T smart00828       25 QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI-KDKMDLFSNISRHLKDGGHLVL  102 (224)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC-CCHHHHHHHHHHHcCCCCEEEE
Confidence            566789999999999875    33  346666777666775 489999999999665 5677999999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ...
T Consensus       103 ~~~  105 (224)
T smart00828      103 ADF  105 (224)
T ss_pred             EEc
Confidence            874

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.39  E-value=9.5e-08  Score=74.45  Aligned_cols=73  Identities=25%  Similarity=0.260  Sum_probs=42.8

Q ss_pred             eeeeccCCCcHHHHHHHHHcC----C-CcEEEEccCCCC-C-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            7 TMSFAPLDVHEAQVQFALERG----L-PAMVGLLSTYQL-P-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~erg----v-~~~~~v~d~~~L-P-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      ...+...|+|+.|++.|+++-    . ............ . ...++||+|+++.+++|+ ++...+++.+.++|||||.
T Consensus        20 ~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-~~~~~~l~~~~~~L~pgG~   98 (99)
T PF08242_consen   20 DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-EDIEAVLRNIYRLLKPGGI   98 (99)
T ss_dssp             EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---S-HHHHHHHHTTT-TSS-E
T ss_pred             CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-hhHHHHHHHHHHHcCCCCC
Confidence            346678899999998777652    1 222222222222 1 223699999999999555 7888999999999999998


Q ss_pred             E
Q 041513           80 W   80 (294)
Q Consensus        80 ~   80 (294)
                      |
T Consensus        99 l   99 (99)
T PF08242_consen   99 L   99 (99)
T ss_dssp             E
T ss_pred             C
Confidence            6

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.39  E-value=2.6e-07  Score=84.55  Aligned_cols=70  Identities=24%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             eccCCCcHHHHHHHHHcCCCcEEE-----EccCCCCCCC--CCcccEEEecCcCcccccChHHHHHHHHhccCCCc-EEE
Q 041513           10 FAPLDVHEAQVQFALERGLPAMVG-----LLSTYQLPYP--SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG-YWV   81 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv~~~~~-----v~d~~~LPfp--d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG-~~v   81 (294)
                      |.+.|+|++||++|++.- +....     ..+.+-.++-  ++|+|+|+|..|+ ||.+.. .+++++.|||||.| .++
T Consensus        58 VIatD~s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFdle-~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen   58 VIATDVSEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFDLE-RFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             heeecCCHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhhhH-HhhchH-HHHHHHHHHcCCCCCEEE
Confidence            456799999999998753 22221     1233334554  9999999999999 998666 99999999999877 544


Q ss_pred             E
Q 041513           82 V   82 (294)
Q Consensus        82 i   82 (294)
                      +
T Consensus       135 v  135 (261)
T KOG3010|consen  135 V  135 (261)
T ss_pred             E
Confidence            4

>TIGR00452 methyltransferase, putative

Probab=98.37  E-value=8.7e-07  Score=84.43  Aligned_cols=74  Identities=18%  Similarity=0.042  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHH--c--C--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALE--R--G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~e--r--g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|.|+.|+..++.  +  +  ..+.+...+.+.+|+. ++||+|+|..+++|+ .++..+|+|++|+|||||.|++
T Consensus       146 ~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvl  223 (314)
T TIGR00452       146 SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVL  223 (314)
T ss_pred             EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEE
Confidence            46788999999876532  1  1  2345556778888875 489999999999665 5777999999999999999998


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       224 et  225 (314)
T TIGR00452       224 ET  225 (314)
T ss_pred             EE
Confidence            75

Known examples to date are restricted to the proteobacteria.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.35  E-value=5.8e-07  Score=70.95  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=57.1

Q ss_pred             eeccCCCcHHHHHHHHHcC------CCcEEEEccC-CCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALERG------LPAMVGLLST-YQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------v~~~~~v~d~-~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG   78 (294)
                      .+.+.|+|++|++.|+++.      ..+.+.+.+. ....+ ...||+|++.. ++.++.  ++...+++++.+.|+|||
T Consensus        27 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  105 (112)
T PF12847_consen   27 RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGG  105 (112)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCc
Confidence            4667799999999998763      3567777777 33444 34599999999 553333  345579999999999999


Q ss_pred             EEEEEcC
Q 041513           79 YWVVSGP   85 (294)
Q Consensus        79 ~~vis~p   85 (294)
                      +|++..|
T Consensus       106 ~lvi~~~  112 (112)
T PF12847_consen  106 RLVINTC  112 (112)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEEC
Confidence            9999764

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.35  E-value=8.9e-07  Score=79.14  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=59.9

Q ss_pred             eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513            8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      ..+.+.|+|++|++.|+++...+.+.++++.. |+++++||+|+|..+++|+.++ ...+++|+.|++  ++++++++
T Consensus        68 ~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587        68 KHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             CeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            46788899999999999865445566677666 8999999999999999887532 357999999998  57888866

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.26  E-value=2.5e-06  Score=74.96  Aligned_cols=75  Identities=23%  Similarity=0.244  Sum_probs=62.9

Q ss_pred             eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+++.+++.++++..   .+.+...+...++++++.||+|+++.++ |...++..+++++.++|+|||++++..
T Consensus        66 ~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934        66 KVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL-RNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             eEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee-CCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            46677999999999988642   4566677888888988999999999999 455677799999999999999999876

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.26  E-value=3.3e-06  Score=75.02  Aligned_cols=76  Identities=26%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             eeccCCCcHHHHHHHHHcC------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++.      .++.+...+...+++++++||+|+++.+++ ...++...+.++.++|+|||++++
T Consensus        78 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~-~~~~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216         78 EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR-NVPDIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             eEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc-cCCCHHHHHHHHHHhccCCcEEEE
Confidence            4667799999999998862      245666778888888889999999999994 455677899999999999999998


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ...
T Consensus       157 ~~~  159 (239)
T PRK00216        157 LEF  159 (239)
T ss_pred             EEe
Confidence            763

>PRK06202 hypothetical protein; Provisional

Probab=98.22  E-value=3.1e-06  Score=76.27  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             eeeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513            8 MSFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      ..+.+.|+|++|++.|+++.  ..+.+.+.+...+++++++||+|+|+.+++|+.++ ...+++|+.|++|  |.+++..
T Consensus        89 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202         89 LEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             cEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            46888999999999998863  23455556677788888999999999999666433 2369999999998  5555543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.21  E-value=2.6e-06  Score=79.60  Aligned_cols=76  Identities=14%  Similarity=0.235  Sum_probs=58.2

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      ..+.+.|+|+.|++.|+++    ++++.+.+.|....++ +++||+|++..+++|... +...+++++.|+|||||++++
T Consensus       143 ~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        143 FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3567789999999988654    5566666667666655 788999999999955432 344799999999999999776


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       222 v~  223 (287)
T PRK12335        222 VC  223 (287)
T ss_pred             EE
Confidence            43

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.21  E-value=2.2e-06  Score=85.23  Aligned_cols=77  Identities=14%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCC--CCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTY--QLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~--~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++|++.++++.   ..+.+.+.+..  .+|+++++||+|+|..+++|+.++ ...+++++.|+|||||++++
T Consensus        61 ~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~  140 (475)
T PLN02336         61 QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF  140 (475)
T ss_pred             EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            4567799999999987642   23556666653  678999999999999999665443 35799999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ...
T Consensus       141 ~d~  143 (475)
T PLN02336        141 RES  143 (475)
T ss_pred             Eec
Confidence            764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.18  E-value=4.4e-06  Score=74.31  Aligned_cols=76  Identities=28%  Similarity=0.349  Sum_probs=60.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccC-CCCC--CCCCcccEEEecCcCcccccC--------hHHHHHHHHh
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLST-YQLP--YPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDR   72 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~-~~LP--fpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~R   72 (294)
                      .+.+.|+|+.|++.|+++    +. ++.+.++++ +.++  +++++||+|++.++. +|...        ...+++++.|
T Consensus        66 ~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~  144 (202)
T PRK00121         66 NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYAR  144 (202)
T ss_pred             cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHHHHHHH
Confidence            577889999999999864    33 456777787 7777  889999999998776 45321        2479999999


Q ss_pred             ccCCCcEEEEEcC
Q 041513           73 VLRPGGYWVVSGP   85 (294)
Q Consensus        73 VLKPGG~~vis~p   85 (294)
                      +|||||+|+++.+
T Consensus       145 ~LkpgG~l~i~~~  157 (202)
T PRK00121        145 KLKPGGEIHFATD  157 (202)
T ss_pred             HcCCCCEEEEEcC
Confidence            9999999999875

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.17  E-value=1.2e-05  Score=71.27  Aligned_cols=92  Identities=17%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|.++.|++.|+++    ++ ++.+..++.+.++. +++||+|+|...     .+...++.++.|+|||||+|++.
T Consensus        71 ~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-----~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107         71 KVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-----ASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             eEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-----cCHHHHHHHHHHhcCCCeEEEEE
Confidence            567779999999998763    44 36677778877877 789999998642     24568999999999999999998


Q ss_pred             cCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513           84 GPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE  124 (294)
Q Consensus        84 ~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~  124 (294)
                      ..+.                  ....++++++.++|....+
T Consensus       145 ~~~~------------------~~~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        145 KGRD------------------PEEEIAELPKALGGKVEEV  167 (187)
T ss_pred             eCCC------------------hHHHHHHHHHhcCceEeee
Confidence            6532                  1235777888888876554

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.11  E-value=1.3e-05  Score=72.68  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=109.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPIS   88 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~   88 (294)
                      .|.++|.|.+||+.|+++..++.|..+|.... -|+..+|+++++.+| ||..+-..+|.-+.-.|.|||.+.+-.|...
T Consensus        56 ~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~  133 (257)
T COG4106          56 VITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDNL  133 (257)
T ss_pred             eEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence            46788999999999999999999988886665 367889999999999 9988887999999999999999999887321


Q ss_pred             ccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCCCchhhhhhhcCCCCCCCCCCCCCccccccCcc
Q 041513           89 WKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEP  168 (294)
Q Consensus        89 ~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~~~~C~~~r~~~~~~~~C~~~~~d~~wy~~~~~  168 (294)
                       .             +..-..|.+.++..-|.........  -+++.....-|-+.-.   +--|+    -+.|.+   .
T Consensus       134 -d-------------epsH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lLa---~~~~r----vDiW~T---~  187 (257)
T COG4106         134 -D-------------EPSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELLA---PLACR----VDIWHT---T  187 (257)
T ss_pred             -C-------------chhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHhC---cccce----eeeeee---e
Confidence             1             1223467778877777655443333  3666665566665521   22453    233532   1


Q ss_pred             ccccCCCCcc-cccccCCCCcCCcccc
Q 041513          169 CVTPLPMVNE-IKDVAGGALEKWPKRL  194 (294)
Q Consensus       169 ci~~~~~~~~-~~~~~~~~~~~wp~Rl  194 (294)
                      -.|++|.... .+++.|..+.+|=+||
T Consensus       188 Y~h~l~~a~aIvdWvkgTgLrP~L~~L  214 (257)
T COG4106         188 YYHQLPGADAIVDWVKGTGLRPYLDRL  214 (257)
T ss_pred             ccccCCCccchhhheeccccceecccc
Confidence            2355555443 3466666677666665

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.08  E-value=2e-06  Score=78.62  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             cCCCcHHHHHHHHHc---CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           12 PLDVHEAQVQFALER---GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        12 p~D~S~~mlq~A~er---gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      -.|.|..|++.++..   ++.....+.|.+.|+|.+++||+|+++..+ ||.++....+..+.-.|||+|.|+-+.
T Consensus       100 ~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  100 MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             eeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHHHHHhcCCCccchhHH
Confidence            359999999999875   355667788999999999999999999999 999998899999999999999999875

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.08  E-value=6.4e-06  Score=80.43  Aligned_cols=73  Identities=22%  Similarity=0.307  Sum_probs=58.0

Q ss_pred             eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|++|++.|+++.  ..+.+...+...+   +++||.|++..+++|... +...+++++.|+|||||++++..
T Consensus       192 ~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        192 SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            5777899999999999863  4455555665544   578999999999976532 34579999999999999999975

>PLN03075 nicotianamine synthase; Provisional

Probab=98.03  E-value=1.1e-05  Score=76.37  Aligned_cols=75  Identities=15%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             eeccCCCcHHHHHHHHHc-----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER-----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .|.+.|.++++++.|++.     ++  .+.|..+|+..++-..+.||+|+|. ++++|. .++..+++.+.|.|+|||+|
T Consensus       151 ~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~L  229 (296)
T PLN03075        151 SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALL  229 (296)
T ss_pred             EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEE
Confidence            577889999999999873     22  3677777766654335789999999 887774 67778999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++-.
T Consensus       230 vlr~  233 (296)
T PLN03075        230 MLRS  233 (296)
T ss_pred             EEec
Confidence            9975

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.01  E-value=1.2e-05  Score=80.33  Aligned_cols=101  Identities=21%  Similarity=0.385  Sum_probs=77.6

Q ss_pred             CCCceeeeeccCCCcHHHHHHHHHcCCCcEEEEcc-CCCCCCCCCcccEEEecCcCcccccC--hHHHHHHHHhccCCCc
Q 041513            2 DYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTSY--DGLYLMEIDRVLRPGG   78 (294)
Q Consensus         2 ~~~v~t~s~ap~D~S~~mlq~A~ergv~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~d--~~~~L~Ei~RVLKPGG   78 (294)
                      +++|-.|.+.|. .....+...-+||+--++  .| -+.++.-+++||+||+...|.++.+.  ...+|.|++|+|||||
T Consensus       385 ~~~VWVMNVVP~-~~~ntL~vIydRGLIG~y--hDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G  461 (506)
T PF03141_consen  385 DDPVWVMNVVPV-SGPNTLPVIYDRGLIGVY--HDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGG  461 (506)
T ss_pred             cCCceEEEeccc-CCCCcchhhhhcccchhc--cchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCc
Confidence            467788999999 556677777788853233  23 67888889999999999998776543  3469999999999999


Q ss_pred             EEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           79 YWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        79 ~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      +++|-..                  ......++.++++|.|+.-.
T Consensus       462 ~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~  488 (506)
T PF03141_consen  462 WVIIRDT------------------VDVLEKVKKIAKSLRWEVRI  488 (506)
T ss_pred             eEEEecc------------------HHHHHHHHHHHHhCcceEEE
Confidence            9999653                  23456788899999997654

; GO: 0008168 methyltransferase activity

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.94  E-value=3.1e-05  Score=68.27  Aligned_cols=76  Identities=24%  Similarity=0.313  Sum_probs=58.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC---CCCCcccEEEecCcCcccccCh--------HHHHHHHHh
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP---YPSRSFDVAHCSRCLVPWTSYD--------GLYLMEIDR   72 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP---fpd~sFD~V~~s~~l~h~~~d~--------~~~L~Ei~R   72 (294)
                      .+.+.|+++.|++.|+++    ++ .+.+..+++..++   +++++||.|++.+.. +|....        ..+++++.|
T Consensus        42 ~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd-pw~k~~h~~~r~~~~~~l~~~~r  120 (194)
T TIGR00091        42 NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD-PWPKKRHNKRRITQPHFLKEYAN  120 (194)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC-cCCCCCccccccCCHHHHHHHHH
Confidence            567789999999998764    34 4566667766554   667899999988766 554321        368999999


Q ss_pred             ccCCCcEEEEEcC
Q 041513           73 VLRPGGYWVVSGP   85 (294)
Q Consensus        73 VLKPGG~~vis~p   85 (294)
                      +|||||.|++...
T Consensus       121 ~LkpgG~l~~~td  133 (194)
T TIGR00091       121 VLKKGGVIHFKTD  133 (194)
T ss_pred             HhCCCCEEEEEeC
Confidence            9999999999874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.93  E-value=7.4e-06  Score=75.95  Aligned_cols=72  Identities=19%  Similarity=0.238  Sum_probs=54.5

Q ss_pred             eeccCCCcHHHHHHHHHcCC-------C----cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERGL-------P----AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-------~----~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      +++++|.++.||+.|++...       +    +.+.+.+.+.+   .+.||+|+|+.+++|. .++..++.-+.+.||||
T Consensus       113 ~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV-~dp~~~l~~l~~~lkP~  188 (282)
T KOG1270|consen  113 QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHV-KDPQEFLNCLSALLKPN  188 (282)
T ss_pred             eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHH-hCHHHHHHHHHHHhCCC
Confidence            56677999999999988520       1    11222334433   2339999999999765 57779999999999999


Q ss_pred             cEEEEEc
Q 041513           78 GYWVVSG   84 (294)
Q Consensus        78 G~~vis~   84 (294)
                      |.++++.
T Consensus       189 G~lfitt  195 (282)
T KOG1270|consen  189 GRLFITT  195 (282)
T ss_pred             CceEeee
Confidence            9999987

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.92  E-value=2.2e-05  Score=70.48  Aligned_cols=76  Identities=20%  Similarity=0.297  Sum_probs=59.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|+++.+++.|+++    +....+...+...++ ..++.||+|+++.++.| ..++..+|+++.++|+|||+++++
T Consensus        72 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~v~  150 (233)
T PRK05134         72 DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH-VPDPASFVRACAKLVKPGGLVFFS  150 (233)
T ss_pred             eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc-cCCHHHHHHHHHHHcCCCcEEEEE
Confidence            466779999999999875    344555556655554 45689999999999955 456778999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       151 ~~  152 (233)
T PRK05134        151 TL  152 (233)
T ss_pred             ec
Confidence            64

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.91  E-value=8.3e-06  Score=72.87  Aligned_cols=71  Identities=23%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             cCCCcHHHHHHHHHcC--C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccC---hHHHHHHHHhccCCCcEEEEEc
Q 041513           12 PLDVHEAQVQFALERG--L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY---DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        12 p~D~S~~mlq~A~erg--v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d---~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      ..|+|+..|+.|++|-  . .+.+.+++... ..|++.||+|+++.++ +|..+   ...++..+...|+|||.+++..
T Consensus        70 avDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVl-YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen   70 AVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVL-YYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             EEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-G-GGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHh-HcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            3499999999999973  3 35666666443 3689999999999999 55543   3358899999999999999965

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.87  E-value=2.9e-05  Score=68.94  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCC-CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513           10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      +...|.++.+++.|+++    ++ ...+...+...++.+ .++||+|++..++ |+..++..++.++.++|+|||.++++
T Consensus        70 v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l-~~~~~~~~~l~~~~~~L~~gG~l~i~  148 (224)
T TIGR01983        70 VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL-EHVPDPQAFIRACAQLLKPGGILFFS  148 (224)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH-HhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            55679999999999874    33 356666676666655 4889999999999 55567779999999999999999987


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       149 ~~  150 (224)
T TIGR01983       149 TI  150 (224)
T ss_pred             ec
Confidence            64

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.79  E-value=7.5e-05  Score=68.00  Aligned_cols=76  Identities=18%  Similarity=0.258  Sum_probs=60.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEcc-CCCCCCCCCcccEEEecCcCccccc-------ChH----HHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTS-------YDG----LYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~-------d~~----~~L~Ei~RVLKP   76 (294)
                      ...+.|+|+.||+.|.++.+...+..+| .+-+||+.++||.|++..++ +|.-       +|.    .++.-++.+|++
T Consensus        74 ~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r  152 (270)
T KOG1541|consen   74 QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKR  152 (270)
T ss_pred             eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhcc
Confidence            3567899999999999877765555555 58999999999999988777 6642       232    267889999999


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      |++.++---
T Consensus       153 g~raV~QfY  161 (270)
T KOG1541|consen  153 GARAVLQFY  161 (270)
T ss_pred             CceeEEEec
Confidence            999999653

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.79  E-value=2.2e-05  Score=69.94  Aligned_cols=75  Identities=25%  Similarity=0.285  Sum_probs=60.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                      +..+.|++++.+..|.++|+++....++..--.|+|++||.|+++.+|.+ ..+|..+|.|+.||   |...+++-|..
T Consensus        38 ~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~-~~~P~~vL~EmlRV---gr~~IVsFPNF  112 (193)
T PF07021_consen   38 DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA-VRRPDEVLEEMLRV---GRRAIVSFPNF  112 (193)
T ss_pred             eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh-HhHHHHHHHHHHHh---cCeEEEEecCh
Confidence            45677899999999999999866644444333599999999999999955 56788999999998   66888888754

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.79  E-value=2.1e-05  Score=70.95  Aligned_cols=87  Identities=21%  Similarity=0.261  Sum_probs=54.9

Q ss_pred             EEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHH
Q 041513           32 VGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLE  111 (294)
Q Consensus        32 ~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le  111 (294)
                      +..+|...+|++++++|+++++.+|  ...+...++.|..|||||||.|.|.+--...       .    +    -+...
T Consensus       108 Vtacdia~vPL~~~svDv~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-------~----~----~~~F~  170 (219)
T PF05148_consen  108 VTACDIANVPLEDESVDVAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKSRF-------E----N----VKQFI  170 (219)
T ss_dssp             EEES-TTS-S--TT-EEEEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--------S---------HHHHH
T ss_pred             EEEecCccCcCCCCceeEEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEecccC-------c----C----HHHHH
Confidence            3457899999999999999999888  3445668999999999999999998732111       0    1    13455


Q ss_pred             HHHHhhceEeeecccc-----eeEeeCCC
Q 041513          112 NLATRLCWKKIAERGP-----IAVWRKPT  135 (294)
Q Consensus       112 ~l~~~lcW~~v~~~~~-----~~iw~Kp~  135 (294)
                      +..+.++++...+...     +..++|..
T Consensus       171 ~~~~~~GF~~~~~d~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  171 KALKKLGFKLKSKDESNKHFVLFEFKKIR  199 (219)
T ss_dssp             HHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred             HHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence            5677889988876443     34466665

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.78  E-value=3.6e-05  Score=73.41  Aligned_cols=76  Identities=20%  Similarity=0.385  Sum_probs=59.5

Q ss_pred             eccCCCcHHHHHHHHHcC-----------CCcEEEEcc------CCCCCCCCCcccEEEecCcCcccccC----hHHHHH
Q 041513           10 FAPLDVHEAQVQFALERG-----------LPAMVGLLS------TYQLPYPSRSFDVAHCSRCLVPWTSY----DGLYLM   68 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg-----------v~~~~~v~d------~~~LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~   68 (294)
                      +.++|+++..|+.|++|-           .++.|..+|      ...+++++..||+|-|.+|+ |+.-.    ...+|+
T Consensus       143 ~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~-HYaFetee~ar~~l~  221 (389)
T KOG1975|consen  143 YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAF-HYAFETEESARIALR  221 (389)
T ss_pred             eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeE-eeeeccHHHHHHHHH
Confidence            456699999999998762           246676665      33557778889999999999 76422    335999


Q ss_pred             HHHhccCCCcEEEEEcCC
Q 041513           69 EIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~pp   86 (294)
                      .+.+.|||||+||-+.|.
T Consensus       222 Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  222 NVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             HHHhhcCCCcEEEEecCc
Confidence            999999999999999984

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.78  E-value=4.2e-05  Score=67.15  Aligned_cols=70  Identities=29%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             eccCCCcHHHHHHHHHcCCCcEEEEccCCC-C-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQ-L-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~-L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+.|+|++|++.|+++++.  +.+.+... + ++++++||+|+|+.++ |+..++..+++|+.|++++   .+++.|
T Consensus        39 ~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l-~~~~d~~~~l~e~~r~~~~---~ii~~p  110 (194)
T TIGR02081        39 GYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTL-QATRNPEEILDEMLRVGRH---AIVSFP  110 (194)
T ss_pred             EEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHh-HcCcCHHHHHHHHHHhCCe---EEEEcC
Confidence            45779999999999887754  44455443 4 4889999999999999 5556787999999998664   455544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.77  E-value=9.1e-05  Score=64.11  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC--------------------hH
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--------------------DG   64 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--------------------~~   64 (294)
                      .+...|+|++|++.|+++    ++...+...|....+  .++||+|+++..++|..+.                    ..
T Consensus        43 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (179)
T TIGR00537        43 CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVID  120 (179)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHH
Confidence            466789999999999874    345555556654433  4589999999877544321                    13


Q ss_pred             HHHHHHHhccCCCcEEEEEcC
Q 041513           65 LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .++.++.|+|||||.+++..+
T Consensus       121 ~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537       121 RFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             HHHHhHHHhhCCCCEEEEEEe
Confidence            579999999999999999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.75  E-value=9.9e-05  Score=58.70  Aligned_cols=73  Identities=16%  Similarity=0.069  Sum_probs=54.0

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+.+.|.|+.+++.|+++    +. ...+...+... ++....+||.|++..+..+    ...+++++.|+|||||+|+
T Consensus        44 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li  119 (124)
T TIGR02469        44 GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIV  119 (124)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEE
Confidence            3567889999999998753    33 34555555443 4444578999999876632    2479999999999999999


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       120 ~~~  122 (124)
T TIGR02469       120 LNA  122 (124)
T ss_pred             EEe
Confidence            875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.71  E-value=4.7e-05  Score=70.72  Aligned_cols=87  Identities=20%  Similarity=0.287  Sum_probs=62.2

Q ss_pred             EEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHH
Q 041513           32 VGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLE  111 (294)
Q Consensus        32 ~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le  111 (294)
                      +..+|...+|++|+|.|+++++.+|  ...+...++.|++|||||||.++|.+--..+           .+..    .+.
T Consensus       214 V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf-----------~dv~----~f~  276 (325)
T KOG3045|consen  214 VIACDMRNVPLEDESVDVAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSRF-----------SDVK----GFV  276 (325)
T ss_pred             eeeccccCCcCccCcccEEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhhc-----------ccHH----HHH
Confidence            4557888999999999999988777  3556778999999999999999998732211           1112    244


Q ss_pred             HHHHhhceEeeecccc-----eeEeeCCC
Q 041513          112 NLATRLCWKKIAERGP-----IAVWRKPT  135 (294)
Q Consensus       112 ~l~~~lcW~~v~~~~~-----~~iw~Kp~  135 (294)
                      +-+..|++........     +..++|+.
T Consensus       277 r~l~~lGF~~~~~d~~n~~F~lfefkK~~  305 (325)
T KOG3045|consen  277 RALTKLGFDVKHKDVSNKYFTLFEFKKTP  305 (325)
T ss_pred             HHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence            4556778877665544     33466664

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.71  E-value=0.00029  Score=61.81  Aligned_cols=71  Identities=21%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|.|++|++.|+++    ++ .+.+..++++.++ .+++||+|+|.. + +   +...+++++.|+|||||.+++.
T Consensus        68 ~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-~---~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138        68 KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-A---SLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-h---CHHHHHHHHHHhcCCCCEEEEE
Confidence            366779999999887653    45 3566677777764 367999998864 4 2   3346889999999999999987


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       142 ~~  143 (181)
T TIGR00138       142 KG  143 (181)
T ss_pred             cC
Confidence            54

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.70  E-value=9.7e-05  Score=66.59  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             eeeccCCCcHHHHHHHHH-cCC----------------CcEEEEccCCCCCCC-CCcccEEEecCcCcccccCh-HHHHH
Q 041513            8 MSFAPLDVHEAQVQFALE-RGL----------------PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYD-GLYLM   68 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~e-rgv----------------~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~-~~~L~   68 (294)
                      ..+.+.|+|+.+++.|.+ .++                .+.+.++|...++.. ...||.|+-..+++|+..+. ..+++
T Consensus        57 ~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~  136 (213)
T TIGR03840        57 HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAA  136 (213)
T ss_pred             CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHH
Confidence            467788999999998633 332                355677887776643 46799999998887875443 35899


Q ss_pred             HHHhccCCCcEEEEEc
Q 041513           69 EIDRVLRPGGYWVVSG   84 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~   84 (294)
                      .+.++|||||++++.+
T Consensus       137 ~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       137 HLLALLPPGARQLLIT  152 (213)
T ss_pred             HHHHHcCCCCeEEEEE
Confidence            9999999999866653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=4.7e-06  Score=71.89  Aligned_cols=54  Identities=26%  Similarity=0.346  Sum_probs=46.9

Q ss_pred             ccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcCCCC
Q 041513           35 LSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGPPIS   88 (294)
Q Consensus        35 ~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~pp~~   88 (294)
                      -.....+|.++|.|+|.|.+++.|+..+.+ .+++|++|+|||||++-++.|...
T Consensus        36 ~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          36 RASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             hhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            346788999999999999999999875544 699999999999999999998654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.65  E-value=1.5e-05  Score=72.94  Aligned_cols=76  Identities=21%  Similarity=0.290  Sum_probs=62.7

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCC-CCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTY-QLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~-~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      -+.+.|+|++|++.|.++|+.-.+.++++. -++ ..+..||+|++..++ .+....+.++.-+.+.|+|||.|.||..
T Consensus       149 ~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSvE  226 (287)
T COG4976         149 RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSVE  226 (287)
T ss_pred             hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEec
Confidence            356789999999999999976555555533 233 567889999999999 7777888999999999999999999973

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.64  E-value=8.5e-05  Score=69.50  Aligned_cols=74  Identities=27%  Similarity=0.373  Sum_probs=53.5

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..+.++.+|++|++.|+++    |+.  +.+...|...++.   .||.|++..++.|.. .+-..+++++.|+|||||.+
T Consensus        86 ~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~  162 (273)
T PF02353_consen   86 CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL  162 (273)
T ss_dssp             -EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred             cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence            3566778999999999764    553  5566667666544   899999999999985 34458999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++-.
T Consensus       163 ~lq~  166 (273)
T PF02353_consen  163 VLQT  166 (273)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.62  E-value=0.0002  Score=67.17  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+++.|++.|+++    ++............++.++.||+|++.... +   ....++.++.|+|||||+|++++
T Consensus       184 ~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-~---~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       184 KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-E---VIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-H---HHHHHHHHHHHHcCCCcEEEEEe
Confidence            467789999999999875    232222111111344567899999997654 2   22368999999999999999998


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      .
T Consensus       260 i  260 (288)
T TIGR00406       260 I  260 (288)
T ss_pred             C
Confidence            4

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.60  E-value=0.00012  Score=71.72  Aligned_cols=76  Identities=24%  Similarity=0.372  Sum_probs=58.6

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCC--CCCCCcccEEEecCcCcccccCh------HHHHHHHHhcc
Q 041513            8 MSFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYD------GLYLMEIDRVL   74 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~------~~~L~Ei~RVL   74 (294)
                      ..+.+.|++..|++.|.++    ++ ++.+..+|+..+  ++++++||.|++.+.. +|....      ..++.|+.|+|
T Consensus       147 ~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvL  225 (390)
T PRK14121        147 KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVL  225 (390)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC-CccccchhhccHHHHHHHHHHHc
Confidence            3567789999998888654    45 455566776554  6899999999987765 665332      37999999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||.+.+.+
T Consensus       226 kpGG~l~l~T  235 (390)
T PRK14121        226 KPGGTLELRT  235 (390)
T ss_pred             CCCcEEEEEE
Confidence            9999999976

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.60  E-value=0.00017  Score=64.13  Aligned_cols=69  Identities=14%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|++++|++.|+++    ++.  +.+..+|......+..+||+|++..++.|.       ..++.|+|||||++++
T Consensus        99 ~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi  171 (205)
T PRK13944         99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVI  171 (205)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEE
Confidence            466789999999999864    332  556667766554456799999999887432       3588999999999988


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       172 ~~  173 (205)
T PRK13944        172 PV  173 (205)
T ss_pred             EE
Confidence            65

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.58  E-value=0.00023  Score=52.84  Aligned_cols=76  Identities=24%  Similarity=0.246  Sum_probs=56.5

Q ss_pred             eeeccCCCcHHHHHHHHHc---C--CCcEEEEccCCCCCC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER---G--LPAMVGLLSTYQLPY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er---g--v~~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+...|.++.+++.+++.   .  ....+...+...... ..+.||+|++..++.++.......++.+.+.|||||+++
T Consensus        22 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~  101 (107)
T cd02440          22 ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLV  101 (107)
T ss_pred             CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEE
Confidence            3566679999999988721   1  234555556554443 568899999999984435566789999999999999998


Q ss_pred             EE
Q 041513           82 VS   83 (294)
Q Consensus        82 is   83 (294)
                      ++
T Consensus       102 ~~  103 (107)
T cd02440         102 LT  103 (107)
T ss_pred             EE
Confidence            86

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.58  E-value=7.8e-05  Score=66.50  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             eeccCCCcHHHHHHHHHcC----C--CcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALERG----L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|++|++.|+++.    .  .+.+.+.+...++   ++||+|++..+++|+.. +...++.++.|++++|+++.
T Consensus        79 ~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021        79 IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            5678899999999998752    2  4567777777765   88999999999977643 34578999999999877766


Q ss_pred             EE
Q 041513           82 VS   83 (294)
Q Consensus        82 is   83 (294)
                      ++
T Consensus       156 ~~  157 (219)
T TIGR02021       156 FA  157 (219)
T ss_pred             EC
Confidence            54

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.57  E-value=0.0002  Score=67.27  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|. +.+++.|+++    ++  .+.+...|....+++.  +|+|++++++|+|.++. ..+|+++.|+|||||+++
T Consensus       175 ~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~  251 (306)
T TIGR02716       175 DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLL  251 (306)
T ss_pred             EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEE
Confidence            3445576 6888888654    44  2456667766666764  69999999997775443 469999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       252 i~d~  255 (306)
T TIGR02716       252 ILDM  255 (306)
T ss_pred             EEEe
Confidence            9864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.56  E-value=0.00013  Score=68.94  Aligned_cols=78  Identities=14%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             eeeeccCCCcHHHHHHHHHc--------CCC----------------------------cEEEEccCCCCCCC-CCcccE
Q 041513            7 TMSFAPLDVHEAQVQFALER--------GLP----------------------------AMVGLLSTYQLPYP-SRSFDV   49 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~er--------gv~----------------------------~~~~v~d~~~LPfp-d~sFD~   49 (294)
                      .+.|.+.|+|+.+|+.|++-        +++                            +.|...+....+++ .+.||+
T Consensus       147 ~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~  226 (287)
T PRK10611        147 RWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDA  226 (287)
T ss_pred             CcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcce
Confidence            35788999999999999753        110                            13334444443443 678999


Q ss_pred             EEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513           50 AHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        50 V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      |+|..+++|+... ...++..+.+.|+|||+|++..
T Consensus       227 I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        227 IFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             eeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            9999999887543 3469999999999999987754

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.52  E-value=0.00021  Score=68.15  Aligned_cols=77  Identities=23%  Similarity=0.145  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecC--cC-----cccc-cChHHHHHHHHhccC
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSR--CL-----VPWT-SYDGLYLMEIDRVLR   75 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~--~l-----~h~~-~d~~~~L~Ei~RVLK   75 (294)
                      .+.+.|+++.|++.|+++    ++. +.+...|+..+|+++++||+|++.-  ..     .+.. +....++.++.|+||
T Consensus       206 ~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk  285 (329)
T TIGR01177       206 KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK  285 (329)
T ss_pred             eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc
Confidence            466789999999988764    443 4566788999999999999999852  11     0101 113479999999999


Q ss_pred             CCcEEEEEcC
Q 041513           76 PGGYWVVSGP   85 (294)
Q Consensus        76 PGG~~vis~p   85 (294)
                      |||++++..+
T Consensus       286 ~gG~lv~~~~  295 (329)
T TIGR01177       286 SEGWIVYAVP  295 (329)
T ss_pred             CCcEEEEEEc
Confidence            9999999876

This family is found exclusively in the Archaea.

>TIGR03438 probable methyltransferase

Probab=97.51  E-value=0.0002  Score=67.54  Aligned_cols=78  Identities=17%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             eeeccCCCcHHHHHHHHHc------CCCcEEEEccCCC-CCCCCCc----ccEEEecCcCcccccC-hHHHHHHHHhccC
Q 041513            8 MSFAPLDVHEAQVQFALER------GLPAMVGLLSTYQ-LPYPSRS----FDVAHCSRCLVPWTSY-DGLYLMEIDRVLR   75 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er------gv~~~~~v~d~~~-LPfpd~s----FD~V~~s~~l~h~~~d-~~~~L~Ei~RVLK   75 (294)
                      ..+.+.|+|++||+.|+++      ++++...++|... ++++...    ..++++..++.|+..+ ...+|+++.++|+
T Consensus        89 ~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~  168 (301)
T TIGR03438        89 ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG  168 (301)
T ss_pred             CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC
Confidence            4678899999999999775      1344455677544 4555443    3344455567555422 3358999999999


Q ss_pred             CCcEEEEEcC
Q 041513           76 PGGYWVVSGP   85 (294)
Q Consensus        76 PGG~~vis~p   85 (294)
                      |||.|++..+
T Consensus       169 pgG~~lig~d  178 (301)
T TIGR03438       169 PGGGLLIGVD  178 (301)
T ss_pred             CCCEEEEecc
Confidence            9999999774

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.51  E-value=0.00022  Score=63.99  Aligned_cols=54  Identities=19%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             cEEEEccCCCC--------CCCCCcccEEEecCcCcccccCh-----------HHHHHHHHhccCCCcEEEEEc
Q 041513           30 AMVGLLSTYQL--------PYPSRSFDVAHCSRCLVPWTSYD-----------GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        30 ~~~~v~d~~~L--------Pfpd~sFD~V~~s~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +.+.++|....        ++++++||+|+|..+. |+..++           ..+|+++.|+|||||.|++..
T Consensus        93 v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188         93 VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            55666776665        3778999999998877 554332           358999999999999999975

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.49  E-value=0.00057  Score=65.95  Aligned_cols=104  Identities=16%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc----cChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT----SYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~----~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+...|+|+.|++.|+++    ++...+...|...  ..++.||+|+|+..+|+..    .....+++++.|.|||||.|
T Consensus       222 ~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L  299 (342)
T PRK09489        222 RLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL  299 (342)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence            466789999999999763    4555555455432  2367899999998883322    12357999999999999999


Q ss_pred             EEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEee
Q 041513           81 VVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWR  132 (294)
Q Consensus        81 vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~  132 (294)
                      ++..+..-         ..+       ..|++...  ..+.+++.....+++
T Consensus       300 ~iVan~~l---------~y~-------~~l~~~Fg--~~~~la~~~~f~v~~  333 (342)
T PRK09489        300 RIVANAFL---------PYP-------DLLDETFG--SHEVLAQTGRFKVYR  333 (342)
T ss_pred             EEEEeCCC---------ChH-------HHHHHHcC--CeEEEEeCCCEEEEE
Confidence            99875210         111       12333332  347777777777775

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.44  E-value=0.0003  Score=64.51  Aligned_cols=66  Identities=26%  Similarity=0.286  Sum_probs=47.0

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+.|+|+.|++.|+++    ++...+      .++..+.+||+|+|.... +   ....++.++.|+|||||+|++++.
T Consensus       145 v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~-~---~~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        145 VLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA-N---PLLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH-H---HHHHHHHHHHHhcCCCcEEEEEEC
Confidence            67789999999999875    231111      122223389999987543 2   223688999999999999999874

>PRK04266 fibrillarin; Provisional

Probab=97.42  E-value=0.00037  Score=63.44  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=48.6

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|++++|++.+.++.   .++.+..+|+..    .+++ .+||+|++.... .  .....++.|+.|+|||||+|+
T Consensus        98 ~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~-p--~~~~~~L~~~~r~LKpGG~lv  173 (226)
T PRK04266         98 VVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVAQ-P--NQAEIAIDNAEFFLKDGGYLL  173 (226)
T ss_pred             eEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCCC-h--hHHHHHHHHHHHhcCCCcEEE
Confidence            4667799999998654431   245555566543    2333 569999865332 1  122357899999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      ++.+
T Consensus       174 I~v~  177 (226)
T PRK04266        174 LAIK  177 (226)
T ss_pred             EEEe
Confidence            9754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.42  E-value=0.00037  Score=63.06  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=55.9

Q ss_pred             eeeccCCCcHHHHHHHH-HcCC----------------CcEEEEccCCCCCCC-CCcccEEEecCcCcccccCh-HHHHH
Q 041513            8 MSFAPLDVHEAQVQFAL-ERGL----------------PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYD-GLYLM   68 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~-ergv----------------~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~-~~~L~   68 (294)
                      ..+.+.|+|+..|+.|. ++++                .+.+.++|...++.. ...||.|+-..+++|+.... ..+++
T Consensus        60 ~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~  139 (218)
T PRK13255         60 HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQ  139 (218)
T ss_pred             CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHH
Confidence            46778899999999864 4443                245566777766543 36899999999987775443 36999


Q ss_pred             HHHhccCCCcEEEE
Q 041513           69 EIDRVLRPGGYWVV   82 (294)
Q Consensus        69 Ei~RVLKPGG~~vi   82 (294)
                      .+.++|||||.+++
T Consensus       140 ~l~~lL~pgG~~~l  153 (218)
T PRK13255        140 QLAALLPAGCRGLL  153 (218)
T ss_pred             HHHHHcCCCCeEEE
Confidence            99999999997554

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.40  E-value=0.00019  Score=69.04  Aligned_cols=76  Identities=29%  Similarity=0.493  Sum_probs=53.8

Q ss_pred             eccCCCcHHHHHHHHHcC---------------CCcEEEEccCCC------CCCCCCcccEEEecCcCcccccChH---H
Q 041513           10 FAPLDVHEAQVQFALERG---------------LPAMVGLLSTYQ------LPYPSRSFDVAHCSRCLVPWTSYDG---L   65 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg---------------v~~~~~v~d~~~------LPfpd~sFD~V~~s~~l~h~~~d~~---~   65 (294)
                      +.+.|+|...|+.|++|-               ..+.+..+|...      ++.+...||+|-|.+++|+......   .
T Consensus        88 ~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~  167 (331)
T PF03291_consen   88 YVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQ  167 (331)
T ss_dssp             EEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHH
Confidence            456799999999998874               245556665331      2333469999999999954444432   4


Q ss_pred             HHHHHHhccCCCcEEEEEcC
Q 041513           66 YLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        66 ~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +|..+.+.|||||+|+.+.|
T Consensus       168 ~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  168 FLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             HHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEEEec
Confidence            89999999999999999987

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK14967 putative methyltransferase; Provisional

Probab=97.39  E-value=0.00055  Score=61.48  Aligned_cols=76  Identities=21%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc--------------------ChH
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS--------------------YDG   64 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~--------------------d~~   64 (294)
                      .+...|+++.|++.|+++    ++.+.+...+... .+++++||+|++.--+.+-..                    ...
T Consensus        61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (223)
T PRK14967         61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLD  139 (223)
T ss_pred             eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHH
Confidence            567789999999988764    4455555566543 356789999999743311111                    023


Q ss_pred             HHHHHHHhccCCCcEEEEEcC
Q 041513           65 LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+++++.++|||||++++...
T Consensus       140 ~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        140 RLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             HHHHHHHHhcCCCcEEEEEEe
Confidence            478899999999999998754

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.39  E-value=0.00093  Score=58.92  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=52.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|.++.|++.|+++    ++  .+.+...+... ++..++.||.|++....    .+...++.++.|+|||||+++
T Consensus        67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv  142 (198)
T PRK00377         67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIV  142 (198)
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEE
Confidence            466779999999998764    42  34555556544 34445789999986432    345689999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       143 ~~~~  146 (198)
T PRK00377        143 IDAI  146 (198)
T ss_pred             EEee
Confidence            8553

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.32  E-value=0.00059  Score=63.44  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             eccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +...+.|..|....++||..+.-    .....-.+..||+|.|..+| .-.+.|..+|++|++.|+|+|+++++.
T Consensus       119 v~aTE~S~~Mr~rL~~kg~~vl~----~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  119 VYATEASPPMRWRLSKKGFTVLD----IDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             EEeecCCHHHHHHHHhCCCeEEe----hhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            45569999999999999975332    22222235679999999999 667788899999999999999999975

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.29  E-value=0.00072  Score=60.58  Aligned_cols=69  Identities=12%  Similarity=-0.003  Sum_probs=52.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|++++|++.|+++    ++ ++.+..+|....+.+++.||+|++...+.+       ...++.+.|||||++++.
T Consensus       103 ~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        103 KVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEE
Confidence            466779999999999875    34 366667777766667789999999877632       234677899999999885


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       176 ~  176 (212)
T PRK13942        176 V  176 (212)
T ss_pred             E
Confidence            4

>PRK14968 putative methyltransferase; Provisional

Probab=97.29  E-value=0.0021  Score=55.03  Aligned_cols=76  Identities=21%  Similarity=0.310  Sum_probs=52.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCCCCCCCcccEEEecCcCcccc--------------------c
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--------------------S   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--------------------~   61 (294)
                      .+...|.|+.|++.|+++    +..   +.+...|... ++++++||+|++...+.+..                    .
T Consensus        47 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (188)
T PRK14968         47 KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGRE  125 (188)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHH
Confidence            456779999999999764    332   5555566433 45667999999875442210                    0


Q ss_pred             ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           62 YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        62 d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ....+++++.++|||||.+++..+
T Consensus       126 ~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968        126 VIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEEc
Confidence            123579999999999999988765

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.27  E-value=0.0013  Score=57.21  Aligned_cols=70  Identities=11%  Similarity=-0.005  Sum_probs=50.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|+++.|++.|+++    ++ .+.+...+.. .++ .+.||+|++.....    ....++.++.++|||||++++.
T Consensus        57 ~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287         57 QVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEE
Confidence            466779999999999763    33 3444444442 344 35799999987652    2346899999999999999986


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       131 ~  131 (187)
T PRK08287        131 F  131 (187)
T ss_pred             E
Confidence            5

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.23  E-value=0.0018  Score=58.15  Aligned_cols=76  Identities=18%  Similarity=0.347  Sum_probs=53.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcc------cccC---------------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVP------WTSY---------------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h------~~~d---------------   62 (294)
                      .+.+.|+++.+++.|+++    ++. +.+..++... ++++++||+|+|.--++.      +...               
T Consensus       113 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~  191 (251)
T TIGR03534       113 RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED  191 (251)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc
Confidence            567789999999999764    443 5566666554 567889999998532211      1000               


Q ss_pred             ----hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 ----DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 ----~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                          ...++.++.++|+|||.+++...
T Consensus       192 ~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       192 GLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             HHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence                12578899999999999999653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.22  E-value=0.00021  Score=67.10  Aligned_cols=75  Identities=27%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+++-|.+...+.-|++.|.. ...++|+..+|+++.+||.+++..++||+....  ..+++|+.|+|||||...+..
T Consensus        67 ~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen   67 LIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             eeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            577889999999999887754 344588999999999999999999998876433  369999999999999977755

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.22  E-value=0.001  Score=63.17  Aligned_cols=72  Identities=24%  Similarity=0.224  Sum_probs=51.5

Q ss_pred             ccCCCcHHHHHHHHHc-CCCcE-EEE-ccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           11 APLDVHEAQVQFALER-GLPAM-VGL-LSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        11 ap~D~S~~mlq~A~er-gv~~~-~~v-~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      -|....-.|-+++++- |.... +.. .+.+.||. .++||+|+|..+|+|- .+|-..|.++...|||||.+++-+
T Consensus       145 DP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  145 DPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             CCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEE
Confidence            3333334444444442 33322 322 47899998 8999999999999874 567799999999999999999843

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.21  E-value=0.0021  Score=63.75  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC----CCCCcccEEEe----c--CcCcccccC-----------
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP----YPSRSFDVAHC----S--RCLVPWTSY-----------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP----fpd~sFD~V~~----s--~~l~h~~~d-----------   62 (294)
                      .+...|++++|++.++++    |+ .+.+...|+..++    +.+++||.|++    +  .++.+ .++           
T Consensus       279 ~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r-~p~~~~~~~~~~~~  357 (434)
T PRK14901        279 EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHR-HPDARWRQTPEKIQ  357 (434)
T ss_pred             eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccccccc-CcchhhhCCHHHHH
Confidence            466779999999998764    55 3566667777665    55789999995    3  23322 111           


Q ss_pred             -----hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 -----DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 -----~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                           ...+|.++.++|||||++++++-
T Consensus       358 ~l~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        358 ELAPLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                 24689999999999999999874

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.19  E-value=0.00044  Score=61.79  Aligned_cols=78  Identities=21%  Similarity=0.333  Sum_probs=51.0

Q ss_pred             eeeeccCCCcHHHHHHHHHc--------CC-------------------------CcEEEEccCCCCCCCCCcccEEEec
Q 041513            7 TMSFAPLDVHEAQVQFALER--------GL-------------------------PAMVGLLSTYQLPYPSRSFDVAHCS   53 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~er--------gv-------------------------~~~~~v~d~~~LPfpd~sFD~V~~s   53 (294)
                      .+.|-+.|+|+.+|+.|++-        ++                         .+.|...+....+.+.+.||+|+|-
T Consensus        64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR  143 (196)
T PF01739_consen   64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR  143 (196)
T ss_dssp             SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred             ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence            57889999999999999752        11                         1344445544444457889999999


Q ss_pred             CcCcccccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513           54 RCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        54 ~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+++++.... ..+++.+++.|+|||+|++..
T Consensus       144 NVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  144 NVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             CEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            9998876543 369999999999999999965

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.19  E-value=0.00079  Score=64.33  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             eeccCCCcHHHHHHHHHcC----------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERG----------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPG   77 (294)
                      .+.+.|+|+.|++.|+++.          ..+.+.+.|.+.+   +++||+|+|..+++|+.++.. .+++.+.+ +.+|
T Consensus       168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g  243 (315)
T PLN02585        168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK  243 (315)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC
Confidence            5778899999999998863          1234555554433   688999999999988765432 35556655 4555


Q ss_pred             cEEEEEcCC
Q 041513           78 GYWVVSGPP   86 (294)
Q Consensus        78 G~~vis~pp   86 (294)
                      |. +++..|
T Consensus       244 ~l-iIs~~p  251 (315)
T PLN02585        244 RL-IISFAP  251 (315)
T ss_pred             EE-EEEeCC
Confidence            55 555443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.18  E-value=0.0019  Score=63.90  Aligned_cols=77  Identities=22%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC--CCCCcccEEE----ecCc--Cc-----ccccC---------
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP--YPSRSFDVAH----CSRC--LV-----PWTSY---------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP--fpd~sFD~V~----~s~~--l~-----h~~~d---------   62 (294)
                      .+...|.|+.|++.++++    |+.+.+.+.|+..++  ++.++||.|+    |+..  +.     .|...         
T Consensus       270 ~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~  349 (427)
T PRK10901        270 QVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAA  349 (427)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHH
Confidence            466779999999999764    455666667776654  4567899999    4421  10     12111         


Q ss_pred             -hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 -DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 -~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                       ...+|.++.++|||||++++++-
T Consensus       350 ~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        350 LQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeC
Confidence             12589999999999999999874

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.15  E-value=0.0034  Score=54.12  Aligned_cols=74  Identities=18%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             eccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccC-----hHHHHHHHHhccCCCcE
Q 041513           10 FAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-----DGLYLMEIDRVLRPGGY   79 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-----~~~~L~Ei~RVLKPGG~   79 (294)
                      +...|+++.+++.|++.    ++. +.+...|... +++++.||+|+|.-=+ |...+     ...++.+..+.|||||.
T Consensus        58 v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~  135 (170)
T PF05175_consen   58 VTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGR  135 (170)
T ss_dssp             EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCE
Confidence            56679999999999873    455 5555555322 3448999999998554 32222     34689999999999999


Q ss_pred             EEEEcC
Q 041513           80 WVVSGP   85 (294)
Q Consensus        80 ~vis~p   85 (294)
                      |++...
T Consensus       136 l~lv~~  141 (170)
T PF05175_consen  136 LFLVIN  141 (170)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            988664

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.14  E-value=0.00076  Score=60.15  Aligned_cols=76  Identities=13%  Similarity=0.274  Sum_probs=54.8

Q ss_pred             eeeccCCCcHHHHHHHH----HcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFAL----ERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~----ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vi   82 (294)
                      ..+...|.|+..++.+.    ++++++...+.|.....++ +.||+|++..++.|...+. ...+..+...++|||++++
T Consensus        53 ~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li  131 (192)
T PF03848_consen   53 FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI  131 (192)
T ss_dssp             -EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence            45667788988877654    4578888888887777775 6799999988885544332 3588999999999999888


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       132 ~~  133 (192)
T PF03848_consen  132 VT  133 (192)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.12  E-value=0.0026  Score=62.90  Aligned_cols=78  Identities=21%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEE--EEccCCCCCC--CCCcccEEEe----c--CcCcccccC------------
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMV--GLLSTYQLPY--PSRSFDVAHC----S--RCLVPWTSY------------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~--~v~d~~~LPf--pd~sFD~V~~----s--~~l~h~~~d------------   62 (294)
                      .+...|+++.+++.++++    |+...+  ..++...+++  ++++||.|++    +  .++.+ .++            
T Consensus       264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~  342 (426)
T TIGR00563       264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAE  342 (426)
T ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHH
Confidence            466779999999998764    555333  3345544444  6788999984    2  23322 111            


Q ss_pred             ----hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513           63 ----DGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        63 ----~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                          ...+|.++.|+|||||++++++-.+
T Consensus       343 l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       343 LAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                2469999999999999999998544

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.12  E-value=0.00091  Score=59.44  Aligned_cols=70  Identities=20%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|++|++.|+++    +.  .+.+..++   ++..+++||+|+|..+++|+.+. ...+++++.+.+++++.+.
T Consensus        87 ~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580         87 KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence            367789999999999875    22  34455454   55667899999999999776533 3468889999876554433

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.10  E-value=0.0021  Score=58.67  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=60.7

Q ss_pred             eeeccCCCcHHHHHHHHH-----------------cCCCcEEEEccCCCCCCC---CCcccEEEecCcCcccccCh-HHH
Q 041513            8 MSFAPLDVHEAQVQFALE-----------------RGLPAMVGLLSTYQLPYP---SRSFDVAHCSRCLVPWTSYD-GLY   66 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~e-----------------rgv~~~~~v~d~~~LPfp---d~sFD~V~~s~~l~h~~~d~-~~~   66 (294)
                      ..+.+.|+|+..|+.+.+                 ++..+.+.++|...++..   .+.||+|+=..+|+++.++. ..+
T Consensus        66 ~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y  145 (226)
T PRK13256         66 VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNY  145 (226)
T ss_pred             CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHH
Confidence            467788999999999755                 234677888888777642   36899999888998876554 359


Q ss_pred             HHHHHhccCCCcEEEEEc
Q 041513           67 LMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        67 L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.++|+|||.+++..
T Consensus       146 ~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        146 AKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             HHHHHHHhCCCcEEEEEE
Confidence            999999999999988865

>PTZ00146 fibrillarin; Provisional

Probab=97.08  E-value=0.0014  Score=62.06  Aligned_cols=72  Identities=11%  Similarity=0.098  Sum_probs=48.3

Q ss_pred             eccCCCcHH----HHHHHHHcCCCcEEEEccCCC---CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513           10 FAPLDVHEA----QVQFALERGLPAMVGLLSTYQ---LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        10 ~ap~D~S~~----mlq~A~ergv~~~~~v~d~~~---LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      +...|+|+.    |++.|+++ .++.+.+.|+..   ++++..+||+|++....   .++...++.|+.|+|||||+|++
T Consensus       160 VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI  235 (293)
T PTZ00146        160 VYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PDQARIVALNAQYFLKNGGHFII  235 (293)
T ss_pred             EEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEE
Confidence            555688875    55666554 245555666532   23344689999988752   23444677899999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ...
T Consensus       236 ~ik  238 (293)
T PTZ00146        236 SIK  238 (293)
T ss_pred             EEe
Confidence            653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.07  E-value=0.0025  Score=48.58  Aligned_cols=74  Identities=26%  Similarity=0.331  Sum_probs=55.4

Q ss_pred             eccCCCcHHHHHHHHHcCC--C---cEEEEccCCC--CCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513           10 FAPLDVHEAQVQFALERGL--P---AMVGLLSTYQ--LPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv--~---~~~~v~d~~~--LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      +.+.|.+..|++.++....  .   +.+...+...  +++.+ ..||++ +.....|+.. ....+.++.|+|+|+|.++
T Consensus        75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~  152 (257)
T COG0500          75 VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLV  152 (257)
T ss_pred             EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEE
Confidence            3348999999998665431  1   2445555554  88988 599999 7766656655 6689999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       153 ~~~~  156 (257)
T COG0500         153 LSDL  156 (257)
T ss_pred             EEec
Confidence            9874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.01  E-value=0.0018  Score=57.85  Aligned_cols=69  Identities=17%  Similarity=0.068  Sum_probs=51.3

Q ss_pred             eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +...|.+++|++.|+++    ++ .+.+...+..........||+|++..+..       .+..++.+.|||||++++..
T Consensus       105 V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       105 VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEE
Confidence            66779999999999875    44 35666667655544567899999887652       23456889999999999865


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      .
T Consensus       178 ~  178 (215)
T TIGR00080       178 G  178 (215)
T ss_pred             c
Confidence            3

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.00  E-value=0.0037  Score=62.15  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=54.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEe----cCc--Cc-----ccccC----------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHC----SRC--LV-----PWTSY----------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~----s~~--l~-----h~~~d----------   62 (294)
                      .+...|+|+.|++.++++    |+. +.+.+.|+..++ ++++||+|++    +..  +.     +|...          
T Consensus       277 ~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~  355 (445)
T PRK14904        277 QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGL  355 (445)
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHH
Confidence            466789999999998764    554 456667777665 5678999994    221  10     11111          


Q ss_pred             hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513           63 DGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        63 ~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                      ...+|.++.++|||||++++++-.+
T Consensus       356 q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        356 QAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2258999999999999999988533

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.96  E-value=0.0014  Score=63.92  Aligned_cols=73  Identities=23%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             ccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           11 APLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.|.++.++..+.+.    ++  ...+.+.+....||++++||.|-+..+.+| ..+...+++|+.||++|||+++...
T Consensus       137 ~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~-~~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  137 VGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH-APDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             cCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc-CCcHHHHHHHHhcccCCCceEEeHH
Confidence            4557777777776553    22  233455678899999999999999999966 4567799999999999999999864

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.94  E-value=0.0084  Score=54.03  Aligned_cols=42  Identities=29%  Similarity=0.577  Sum_probs=36.1

Q ss_pred             CCCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEEEEEcC
Q 041513           43 PSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        43 pd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ..++||+|+|..++ |+..-.  +.+|++..++|+|||.|++.+|
T Consensus        99 ~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   99 SPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             CCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            46799999999999 876443  3599999999999999999987

The function of this family is unknown.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.90  E-value=0.0017  Score=61.12  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=56.2

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..+.+.++|++|.+.|+++    |++  +.+...|-..+   .+.||-|++..+++|+.. +-..+++-+.++|+|||.+
T Consensus        96 v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~  172 (283)
T COG2230          96 VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM  172 (283)
T ss_pred             CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence            4567789999999999874    554  44444443333   344999999999988764 3458999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++-.
T Consensus       173 llh~  176 (283)
T COG2230         173 LLHS  176 (283)
T ss_pred             EEEE
Confidence            8854

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.90  E-value=0.00069  Score=53.72  Aligned_cols=78  Identities=26%  Similarity=0.395  Sum_probs=56.6

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC--CCCCcccEEEecCcCccccc-------ChHHHHHHHHh
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTS-------YDGLYLMEIDR   72 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~-------d~~~~L~Ei~R   72 (294)
                      ..+...|+++..++.|+++    +.  ++.+.+.|...++  +++++||+|++.-=+.....       .-..+++++.|
T Consensus        24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~  103 (117)
T PF13659_consen   24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR  103 (117)
T ss_dssp             CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred             CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence            4677889999999999874    23  4677778866665  88999999999755532211       12368999999


Q ss_pred             ccCCCcEEEEEcC
Q 041513           73 VLRPGGYWVVSGP   85 (294)
Q Consensus        73 VLKPGG~~vis~p   85 (294)
                      +|||||.+++..+
T Consensus       104 ~L~~gG~~~~~~~  116 (117)
T PF13659_consen  104 LLKPGGVLVFITP  116 (117)
T ss_dssp             HEEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEeC
Confidence            9999999998753

...

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.86  E-value=0.0053  Score=60.99  Aligned_cols=79  Identities=15%  Similarity=0.207  Sum_probs=55.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC-CCCCcccEEEec---CcCcccccC-----------------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP-YPSRSFDVAHCS---RCLVPWTSY-----------------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP-fpd~sFD~V~~s---~~l~h~~~d-----------------   62 (294)
                      .+...|+|+.+++.++++    |+. +.+.+.|+..++ +.+++||.|++-   ..+..+..+                 
T Consensus       264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~  343 (431)
T PRK14903        264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE  343 (431)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHH
Confidence            566779999999999764    553 456667777776 557889999861   111111111                 


Q ss_pred             -hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513           63 -DGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        63 -~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                       ...+|.++.+.|||||++++++-.+
T Consensus       344 ~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        344 IQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECCC
Confidence             2347899999999999999988533

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.82  E-value=0.0058  Score=56.59  Aligned_cols=79  Identities=15%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEe----cC--cCcc-------cc--------cC
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHC----SR--CLVP-------WT--------SY   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~----s~--~l~h-------~~--------~d   62 (294)
                      .+...|+++.+++.++++    ++ .+.+...|+..++...+.||.|++    +.  ++.+       +.        ..
T Consensus        98 ~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~  177 (264)
T TIGR00446        98 AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISAL  177 (264)
T ss_pred             EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHH
Confidence            466789999999988764    44 345556677666666677999985    22  1211       11        01


Q ss_pred             hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513           63 DGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        63 ~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                      ...+|.++.+.|||||++++++-.+
T Consensus       178 q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       178 QKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            2348999999999999999998544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.80  E-value=0.0031  Score=61.76  Aligned_cols=74  Identities=9%  Similarity=-0.000  Sum_probs=52.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC----CcEEEEccCCCCCCCCCcccEEEecCcCccccc-----ChHHHHHHHHhccC
Q 041513            9 SFAPLDVHEAQVQFALER----GL----PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-----YDGLYLMEIDRVLR   75 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv----~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-----d~~~~L~Ei~RVLK   75 (294)
                      .+...|+|+.|++.|+++    +.    .+.+...+... .+++.+||+|+|.--+ |...     ....+++++.|+||
T Consensus       254 ~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPf-h~~~~~~~~ia~~l~~~a~~~Lk  331 (378)
T PRK15001        254 KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF-HQQHALTDNVAWEMFHHARRCLK  331 (378)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCc-ccCccCCHHHHHHHHHHHHHhcc
Confidence            456779999999999874    22    23444444322 2455689999998777 3321     12468999999999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||.|++..
T Consensus       332 pGG~L~iV~  340 (378)
T PRK15001        332 INGELYIVA  340 (378)
T ss_pred             cCCEEEEEE
Confidence            999999986

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.78  E-value=0.003  Score=58.30  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             eeeccCCCcHHHHHHHHHcCC------CcEEEEcc--CCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCc
Q 041513            8 MSFAPLDVHEAQVQFALERGL------PAMVGLLS--TYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGG   78 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv------~~~~~v~d--~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG   78 (294)
                      +.+..-|.|+..|++.+++..      .+.+...+  ...-|.+.+++|+|++.++|.-.+.+. ..++..+.|+|||||
T Consensus        98 l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG  177 (264)
T KOG2361|consen   98 LKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGG  177 (264)
T ss_pred             eEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCc
Confidence            556677999999999987642      12222222  224577899999999999996555443 369999999999999


Q ss_pred             EEEEEc
Q 041513           79 YWVVSG   84 (294)
Q Consensus        79 ~~vis~   84 (294)
                      .+++..
T Consensus       178 ~llfrD  183 (264)
T KOG2361|consen  178 SLLFRD  183 (264)
T ss_pred             EEEEee
Confidence            999975

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.70  E-value=0.0059  Score=54.18  Aligned_cols=70  Identities=16%  Similarity=0.031  Sum_probs=49.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|.++++++.|+++    ++ .+.+...+......+.+.||+|++..++.+       ...++.+.|+|||.+++.
T Consensus       102 ~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        102 RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAP  174 (212)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEE
Confidence            355679999999999874    34 355555664332223578999999877632       345778999999999997


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       175 ~~  176 (212)
T PRK00312        175 VG  176 (212)
T ss_pred             Ec
Confidence            64

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.54  E-value=0.014  Score=54.57  Aligned_cols=75  Identities=13%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecC-------------cCccccc--------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSR-------------CLVPWTS--------   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~-------------~l~h~~~--------   61 (294)
                      .+...|+|+.+++.|+++    ++.  +.+..+|... +++++.||+|++.-             ++ ++.+        
T Consensus       140 ~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~-~~eP~~AL~gg~  217 (284)
T TIGR00536       140 EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVV-RFEPLLALVGGD  217 (284)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCccc-ccCcHHHhcCCC
Confidence            466779999999999874    343  5566666433 45566899999851             12 1111        


Q ss_pred             ----ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           62 ----YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        62 ----d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                          ....++.++.+.|+|||++++...
T Consensus       218 dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       218 DGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             cHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence                123578899999999999988664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.54  E-value=0.014  Score=53.44  Aligned_cols=75  Identities=17%  Similarity=0.316  Sum_probs=50.4

Q ss_pred             eeccCCCcHHHHHHHHHc---C--CCcEEEEccCCCCCCCCCcccEEEecCcCccc------c-----------------
Q 041513            9 SFAPLDVHEAQVQFALER---G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW------T-----------------   60 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er---g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~------~-----------------   60 (294)
                      .+.+.|+|+.+++.|+++   .  ..+.+...|... ++++++||+|+|.--.+..      .                 
T Consensus       134 ~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~  212 (275)
T PRK09328        134 EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED  212 (275)
T ss_pred             EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC
Confidence            466779999999999875   2  245565566432 3446899999985221100      0                 


Q ss_pred             --cChHHHHHHHHhccCCCcEEEEEc
Q 041513           61 --SYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        61 --~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                        .....++.++.++|||||++++..
T Consensus       213 g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        213 GLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             HHHHHHHHHHHHHHhcccCCEEEEEE
Confidence              011357888889999999999954

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.53  E-value=0.0055  Score=59.19  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             CceeeeeccCCCcHHHHHHHHHc----CCC-c-EEEEccCCCCCCCCCcccEEEec--CcCc---ccc---cChHHHHHH
Q 041513            4 NILTMSFAPLDVHEAQVQFALER----GLP-A-MVGLLSTYQLPYPSRSFDVAHCS--RCLV---PWT---SYDGLYLME   69 (294)
Q Consensus         4 ~v~t~s~ap~D~S~~mlq~A~er----gv~-~-~~~v~d~~~LPfpd~sFD~V~~s--~~l~---h~~---~d~~~~L~E   69 (294)
                      +.++....+.|+.+.|++-|+.+    +++ . ....+|+..+||++++||.|+|-  +...   .-.   +--..+|.+
T Consensus       216 gl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~  295 (347)
T COG1041         216 GLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALES  295 (347)
T ss_pred             hhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHH
Confidence            35666778889999999999875    232 2 23345999999999999999973  1110   111   112469999


Q ss_pred             HHhccCCCcEEEEEcC
Q 041513           70 IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        70 i~RVLKPGG~~vis~p   85 (294)
                      +.++||+||++++..|
T Consensus       296 ~~evLk~gG~~vf~~p  311 (347)
T COG1041         296 ASEVLKPGGRIVFAAP  311 (347)
T ss_pred             HHHHhhcCcEEEEecC
Confidence            9999999999999987

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.46  E-value=0.011  Score=53.69  Aligned_cols=88  Identities=19%  Similarity=0.273  Sum_probs=59.4

Q ss_pred             ccCCCCCC---CCCcccEEEecCcCcccccChH---HHHHHHHhccCCCcE-----EEEEcCC-CCccccCCCcccChHH
Q 041513           35 LSTYQLPY---PSRSFDVAHCSRCLVPWTSYDG---LYLMEIDRVLRPGGY-----WVVSGPP-ISWKTSYRGWERDAKD  102 (294)
Q Consensus        35 ~d~~~LPf---pd~sFD~V~~s~~l~h~~~d~~---~~L~Ei~RVLKPGG~-----~vis~pp-~~~~~~~~~w~~~~e~  102 (294)
                      +|-...|+   +++.||+|.||.+| .+++++.   ..++-+.+.|||+|.     |++..|. ---.++|.        
T Consensus        90 qDFm~rplp~~~~e~FdvIs~SLVL-NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~--------  160 (219)
T PF11968_consen   90 QDFMERPLPKNESEKFDVISLSLVL-NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM--------  160 (219)
T ss_pred             eccccCCCCCCcccceeEEEEEEEE-eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc--------
Confidence            45445555   47899999999999 8887763   599999999999999     8887752 11111111        


Q ss_pred             HHHHHHHHHHHHHhhceEeeecccc----eeEeeCC
Q 041513          103 LQKEQISLENLATRLCWKKIAERGP----IAVWRKP  134 (294)
Q Consensus       103 l~~~~~~le~l~~~lcW~~v~~~~~----~~iw~Kp  134 (294)
                         ..+.+..+...+++..+..+..    .-.|+|.
T Consensus       161 ---~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~  193 (219)
T PF11968_consen  161 ---TEERLREIMESLGFTRVKYKKSKKLAYWLFRKS  193 (219)
T ss_pred             ---CHHHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence               1245666778888888766443    2346654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.44  E-value=0.0089  Score=56.06  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecC------cCc----ccccCh---------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSR------CLV----PWTSYD---------   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~------~l~----h~~~d~---------   63 (294)
                      .+.+.|+|+.+++.|+++    ++.  +.+..+|... ++++++||+|+|.-      .+.    .+..++         
T Consensus       147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d  225 (284)
T TIGR03533       147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED  225 (284)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc
Confidence            566789999999999875    442  5566666432 34567899999851      010    010111         


Q ss_pred             -----HHHHHHHHhccCCCcEEEEEcC
Q 041513           64 -----GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 -----~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                           ..++.++.++|+|||++++-..
T Consensus       226 Gl~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       226 GLDLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                 3578899999999999998654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.44  E-value=0.0056  Score=53.38  Aligned_cols=69  Identities=17%  Similarity=0.065  Sum_probs=43.4

Q ss_pred             eccCCCcHHHHHHHHHcCCCcEEEEccCCCCC--------CCCCcccEEEecCcCc---ccccC-------hHHHHHHHH
Q 041513           10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQLP--------YPSRSFDVAHCSRCLV---PWTSY-------DGLYLMEID   71 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LP--------fpd~sFD~V~~s~~l~---h~~~d-------~~~~L~Ei~   71 (294)
                      +...|+|+.+      ....+.+...+....+        +++++||+|++..+.+   +|..+       ...++.++.
T Consensus        60 v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~  133 (188)
T TIGR00438        60 VIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAK  133 (188)
T ss_pred             EEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence            3445666544      1123445555654432        5678899999865421   11111       247999999


Q ss_pred             hccCCCcEEEEEc
Q 041513           72 RVLRPGGYWVVSG   84 (294)
Q Consensus        72 RVLKPGG~~vis~   84 (294)
                      ++|||||+|++..
T Consensus       134 ~~LkpgG~lvi~~  146 (188)
T TIGR00438       134 EVLKPKGNFVVKV  146 (188)
T ss_pred             HHccCCCEEEEEE
Confidence            9999999999965

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.39  E-value=0.006  Score=57.20  Aligned_cols=91  Identities=21%  Similarity=0.331  Sum_probs=58.7

Q ss_pred             ccCCCCCCCC---CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHH
Q 041513           35 LSTYQLPYPS---RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLE  111 (294)
Q Consensus        35 ~d~~~LPfpd---~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le  111 (294)
                      +|...+.-++   ++||+|++++-+ .-..+.-..|..|.++|||||++|=.+| ..|.....+ ...+..++-.+++|.
T Consensus       151 GDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG~WIN~GP-Llyh~~~~~-~~~~~sveLs~eEi~  227 (270)
T PF07942_consen  151 GDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGGYWINFGP-LLYHFEPMS-IPNEMSVELSLEEIK  227 (270)
T ss_pred             CccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCCEEEecCC-ccccCCCCC-CCCCcccCCCHHHHH
Confidence            4444443344   799999988554 4445555799999999999997766665 433211100 011122444578899


Q ss_pred             HHHHhhceEeeecccce
Q 041513          112 NLATRLCWKKIAERGPI  128 (294)
Q Consensus       112 ~l~~~lcW~~v~~~~~~  128 (294)
                      .+++.++|+.+.+...+
T Consensus       228 ~l~~~~GF~~~~~~~~i  244 (270)
T PF07942_consen  228 ELIEKLGFEIEKEESSI  244 (270)
T ss_pred             HHHHHCCCEEEEEEEee
Confidence            99999999998765533

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.38  E-value=0.023  Score=56.46  Aligned_cols=78  Identities=22%  Similarity=0.326  Sum_probs=52.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC--CCCCcccEEEecC------cCcc-----cccC--------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP--YPSRSFDVAHCSR------CLVP-----WTSY--------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP--fpd~sFD~V~~s~------~l~h-----~~~d--------   62 (294)
                      .+...|+++.+++.++++    |+. +.+.+.|+..++  ++ ++||+|++--      .+.+     |...        
T Consensus       277 ~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~  355 (444)
T PRK14902        277 KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQ  355 (444)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHH
Confidence            566779999999998764    443 556667766543  44 7899999631      1111     1111        


Q ss_pred             --hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513           63 --DGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        63 --~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                        ...+|.++.|+|||||++++++..+
T Consensus       356 ~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        356 EIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence              1247999999999999999987543

>PRK00811 spermidine synthase; Provisional

Probab=96.38  E-value=0.019  Score=53.80  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             eeccCCCcHHHHHHHHHcC----------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALERG----------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RV   73 (294)
                      .+...|+++++++.|++.-          ..+.+...|+.. +...++.||+|++-.+- ++...    ...+++++.|.
T Consensus       102 ~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~  180 (283)
T PRK00811        102 KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTD-PVGPAEGLFTKEFYENCKRA  180 (283)
T ss_pred             EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCC-CCCchhhhhHHHHHHHHHHh
Confidence            4666799999999998741          124455566433 34457899999986543 33222    14678999999


Q ss_pred             cCCCcEEEEEc
Q 041513           74 LRPGGYWVVSG   84 (294)
Q Consensus        74 LKPGG~~vis~   84 (294)
                      |+|||.+++..
T Consensus       181 L~~gGvlv~~~  191 (283)
T PRK00811        181 LKEDGIFVAQS  191 (283)
T ss_pred             cCCCcEEEEeC
Confidence            99999998854

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.37  E-value=0.021  Score=50.06  Aligned_cols=72  Identities=18%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|.++.|++.|+++    ++ ++.+...++.. ++.-...+|.++...     ..+...++.++.|+|+|||+|++
T Consensus        66 ~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~  140 (196)
T PRK07402         66 RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVA  140 (196)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEE
Confidence            456679999999999864    44 34555555432 322223467665422     23445899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       141 ~~~  143 (196)
T PRK07402        141 TAS  143 (196)
T ss_pred             Eee
Confidence            875

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.32  E-value=0.023  Score=56.50  Aligned_cols=77  Identities=13%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCC-CCcccEEEecCcCcccc--------------------cC-
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWT--------------------SY-   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~--------------------~d-   62 (294)
                      .+...|+|++|++.|+++    +..+.+..+|.....++ .++||+|+|.-=.+.-.                    ++ 
T Consensus       277 ~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG  356 (423)
T PRK14966        277 FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG  356 (423)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence            466789999999999874    44566766775443333 46899999953211100                    01 


Q ss_pred             ---hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 ---DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 ---~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                         ...++.++.+.|+|||++++...
T Consensus       357 L~~yr~Ii~~a~~~LkpgG~lilEiG  382 (423)
T PRK14966        357 LSCIRTLAQGAPDRLAEGGFLLLEHG  382 (423)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence               12466677889999999887553

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.07  E-value=0.0073  Score=60.50  Aligned_cols=75  Identities=23%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             eccCCCcHHHHHHHHHcC---C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHH---------HHHHHHhccCC
Q 041513           10 FAPLDVHEAQVQFALERG---L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGL---------YLMEIDRVLRP   76 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg---v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~---------~L~Ei~RVLKP   76 (294)
                      |.-.|+|.-.+.....++   . ...+...+...+.|+|.+||+|+--..+.+...+...         .+.|+.|+|+|
T Consensus        74 I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~  153 (482)
T KOG2352|consen   74 ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAP  153 (482)
T ss_pred             ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhcc
Confidence            344567766666666554   2 2445567899999999999999999988766554433         46899999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||+++...
T Consensus       154 ~gk~~svt  161 (482)
T KOG2352|consen  154 GGKYISVT  161 (482)
T ss_pred             CCEEEEEE
Confidence            99977754

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.95  E-value=0.024  Score=53.89  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecC---------c----Ccccc-------cC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSR---------C----LVPWT-------SY   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~---------~----l~h~~-------~d   62 (294)
                      .+.+.|+|+.+++.|+++    ++  .+.+..+|... ++++++||+|+|.-         .    +.|..       ++
T Consensus       159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d  237 (307)
T PRK11805        159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD  237 (307)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence            566789999999999875    44  25566666432 34567899999861         0    11110       01


Q ss_pred             ----hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 ----DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 ----~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                          -..+++++.++|+|||++++-..
T Consensus       238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        238 GLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             hHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                13578999999999999998643

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.94  E-value=0.019  Score=55.05  Aligned_cols=68  Identities=13%  Similarity=0.065  Sum_probs=49.7

Q ss_pred             eccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +...|.+++|++.|+++    ++. +.+..+|....+.+...||+|++...+.+       ....+.++|+|||.+++..
T Consensus       108 VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        108 VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence            56679999999999863    443 45556676666556678999999866632       2345778999999998854

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.89  E-value=0.012  Score=53.26  Aligned_cols=67  Identities=22%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             CCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCC--cEEEEEcC
Q 041513           14 DVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPG--GYWVVSGP   85 (294)
Q Consensus        14 D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPG--G~~vis~p   85 (294)
                      |. ++.++.|++ .-.+.+..+|.. -|+|.  +|+++..++||+|.++. ..+|+.+.+.|+||  |+++|...
T Consensus       131 Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  131 DL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             E--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             cc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            44 556666666 334566556655 67777  99999999998887654 35999999999999  99999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PHA03411 putative methyltransferase; Provisional

Probab=95.88  E-value=0.025  Score=53.29  Aligned_cols=80  Identities=11%  Similarity=0.079  Sum_probs=57.9

Q ss_pred             eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-------------------hHHHHH
Q 041513            8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-------------------DGLYLM   68 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-------------------~~~~L~   68 (294)
                      ..+...|+++.|++.|+++...+.+.+.|...+.. +.+||+|++.-.+.|....                   ....++
T Consensus        89 ~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~  167 (279)
T PHA03411         89 EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA  167 (279)
T ss_pred             CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHh
Confidence            35778899999999998874456677778776653 5789999998777553211                   135678


Q ss_pred             HHHhccCCCcEEEEE--cCCCC
Q 041513           69 EIDRVLRPGGYWVVS--GPPIS   88 (294)
Q Consensus        69 Ei~RVLKPGG~~vis--~pp~~   88 (294)
                      .+.++|+|+|.+++.  +.|++
T Consensus       168 ~v~~~L~p~G~~~~~yss~~~y  189 (279)
T PHA03411        168 DVGYFIVPTGSAGFAYSGRPYY  189 (279)
T ss_pred             hhHheecCCceEEEEEeccccc
Confidence            889999999987764  34554

>PRK04457 spermidine synthase; Provisional

Probab=95.86  E-value=0.048  Score=50.59  Aligned_cols=76  Identities=13%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             eeeccCCCcHHHHHHHHHc-CC-----CcEEEEccCCC-CCCCCCcccEEEecCcCccc--c--cChHHHHHHHHhccCC
Q 041513            8 MSFAPLDVHEAQVQFALER-GL-----PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPW--T--SYDGLYLMEIDRVLRP   76 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er-gv-----~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~--~--~d~~~~L~Ei~RVLKP   76 (294)
                      ..+...|+++++++.|++. +.     .+.+.++|+.. +.-..++||+|++-. +..-  .  .....+++++.++|+|
T Consensus        91 ~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~p  169 (262)
T PRK04457         91 TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSS  169 (262)
T ss_pred             CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCC
Confidence            3466779999999999985 21     24555566432 232346899999752 2111  1  1124799999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||.|++..
T Consensus       170 gGvlvin~  177 (262)
T PRK04457        170 DGIFVVNL  177 (262)
T ss_pred             CcEEEEEc
Confidence            99999964

>PRK03612 spermidine synthase; Provisional

Probab=95.67  E-value=0.036  Score=56.39  Aligned_cols=75  Identities=20%  Similarity=0.173  Sum_probs=51.9

Q ss_pred             eeccCCCcHHHHHHHHHcC------------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC-----hHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG------------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY-----DGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d-----~~~~L~Ei   70 (294)
                      .+...|++++|++.|++..            ..+.+...|+.. +...+++||+|++.... +....     ...+++++
T Consensus       323 ~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~  401 (521)
T PRK03612        323 QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPD-PSNPALGKLYSVEFYRLL  401 (521)
T ss_pred             eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCC-CCCcchhccchHHHHHHH
Confidence            4556699999999999831            124455566443 33345789999987543 32221     12588999


Q ss_pred             HhccCCCcEEEEEc
Q 041513           71 DRVLRPGGYWVVSG   84 (294)
Q Consensus        71 ~RVLKPGG~~vis~   84 (294)
                      .+.|||||.+++..
T Consensus       402 ~~~L~pgG~lv~~~  415 (521)
T PRK03612        402 KRRLAPDGLLVVQS  415 (521)
T ss_pred             HHhcCCCeEEEEec
Confidence            99999999999865

>PRK01581 speE spermidine synthase; Validated

Probab=95.61  E-value=0.024  Score=55.47  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             eeccCCCcHHHHHHHHHc------------CCCcEEEEccCCC-CCCCCCcccEEEecCcCccccc-----ChHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER------------GLPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTS-----YDGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er------------gv~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~-----d~~~~L~Ei   70 (294)
                      .+...|++++|++.|++.            +..+.+.+.|+.. +.-.++.||+|++-..- +...     ....+++.+
T Consensus       176 ~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~  254 (374)
T PRK01581        176 HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARI  254 (374)
T ss_pred             eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHH
Confidence            355569999999999961            1234555566443 44556789999987422 1110     113589999


Q ss_pred             HhccCCCcEEEEEc
Q 041513           71 DRVLRPGGYWVVSG   84 (294)
Q Consensus        71 ~RVLKPGG~~vis~   84 (294)
                      .+.|+|||.|+...
T Consensus       255 ~~~LkPgGV~V~Qs  268 (374)
T PRK01581        255 ATFLTEDGAFVCQS  268 (374)
T ss_pred             HHhcCCCcEEEEec
Confidence            99999999988864

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.017  Score=54.85  Aligned_cols=72  Identities=26%  Similarity=0.349  Sum_probs=51.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+.+-.++.|+++    +++..........+..+. ..||+|+|+-.- +   ....+..++.+.|||||++++|
T Consensus       187 ~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA-~---vl~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         187 KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA-E---VLVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-H---HHHHHHHHHHHHcCCCceEEEE
Confidence            456779999999999874    454312222233444555 599999988533 2   2236889999999999999999


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      +
T Consensus       263 G  263 (300)
T COG2264         263 G  263 (300)
T ss_pred             e
Confidence            8

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=95.57  E-value=0.025  Score=52.23  Aligned_cols=84  Identities=20%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             EEEEccCCCC--CCCCCcccEEEec---CcCcccccChHHHHHHHHhccCCCcEEEEEc-CCCCccccCCCcccChHHHH
Q 041513           31 MVGLLSTYQL--PYPSRSFDVAHCS---RCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG-PPISWKTSYRGWERDAKDLQ  104 (294)
Q Consensus        31 ~~~v~d~~~L--Pfpd~sFD~V~~s---~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~-pp~~~~~~~~~w~~~~e~l~  104 (294)
                      .+..+|+.++  .|+|.|||+|+.-   +++ --.-.-+.+.+|++|+|||||.++.-. .|-.   .++|        .
T Consensus       188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~-AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---ryrG--------~  255 (287)
T COG2521         188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSL-AGELYSEEFYRELYRILKRGGRLFHYVGNPGK---RYRG--------L  255 (287)
T ss_pred             EEecccHHHHHhcCCccccceEeeCCCccch-hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---cccc--------C
Confidence            3344554333  5899999999731   111 001123468899999999999988754 3321   1111        1


Q ss_pred             HHHHHHHHHHHhhceEeeeccc
Q 041513          105 KEQISLENLATRLCWKKIAERG  126 (294)
Q Consensus       105 ~~~~~le~l~~~lcW~~v~~~~  126 (294)
                      ..++.+.+.+.+.++..+....
T Consensus       256 d~~~gVa~RLr~vGF~~v~~~~  277 (287)
T COG2521         256 DLPKGVAERLRRVGFEVVKKVR  277 (287)
T ss_pred             ChhHHHHHHHHhcCceeeeeeh
Confidence            2345566667778888665533

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.53  E-value=0.014  Score=53.05  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             CCCcHHHHHHHHHcC-----CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcCC
Q 041513           13 LDVHEAQVQFALERG-----LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        13 ~D~S~~mlq~A~erg-----v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      .|..+..++.|++.-     .-..+.+.+.+..--+.+.||+|.+.+|+.|..++.- .+|+-+...|+|||.+++-++-
T Consensus        84 VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~  163 (218)
T PF05891_consen   84 VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV  163 (218)
T ss_dssp             EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence            378889999998632     1234556677766545689999999999999876543 6999999999999999996631


Q ss_pred             CCcc----ccCC-CcccChHHHHHHHHHHHHHHHhhceEeeecccc
Q 041513           87 ISWK----TSYR-GWERDAKDLQKEQISLENLATRLCWKKIAERGP  127 (294)
Q Consensus        87 ~~~~----~~~~-~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~  127 (294)
                      ..-.    +... -+.|+.+       .+.+|.+.-..+.+.+..+
T Consensus       164 ~~~~~~~~D~~DsSvTRs~~-------~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  164 SSSGFDEFDEEDSSVTRSDE-------HFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             ESSSEEEEETTTTEEEEEHH-------HHHHHHHHCT-EEEEEEE-
T ss_pred             CCCCCcccCCccCeeecCHH-------HHHHHHHHcCCEEEEeccc
Confidence            1100    0000 1334433       4566677777777775443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00417 speE spermidine synthase

Probab=95.43  E-value=0.074  Score=49.32  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL   74 (294)
                      .+...|+++++++.|++.-         ..+.+...|+.. +.-.++.||+|++.... +....    ...+++.+.+.|
T Consensus        98 ~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L  176 (270)
T TIGR00417        98 KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTD-PVGPAETLFTKEFYELLKKAL  176 (270)
T ss_pred             eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCC-CCCcccchhHHHHHHHHHHHh
Confidence            4556699999999998741         123344444322 22235789999986553 22221    236889999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      +|||.+++..
T Consensus       177 ~pgG~lv~~~  186 (270)
T TIGR00417       177 NEDGIFVAQS  186 (270)
T ss_pred             CCCcEEEEcC
Confidence            9999999875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=95.36  E-value=0.045  Score=48.91  Aligned_cols=75  Identities=23%  Similarity=0.372  Sum_probs=55.7

Q ss_pred             eccCCCcHHHHHHHHH----cCCC--cEEEEccCCCCCCCCCcccEEEecCcCc--cccc-----ChHHHHHHHHhccCC
Q 041513           10 FAPLDVHEAQVQFALE----RGLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLV--PWTS-----YDGLYLMEIDRVLRP   76 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~e----rgv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~--h~~~-----d~~~~L~Ei~RVLKP   76 (294)
                      +.+.|.|++.++.|+.    ++.+  +.|.++|...-.|..+.||+|+=-.++-  ....     .+..++.-+.++|+|
T Consensus        94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~  173 (227)
T KOG1271|consen   94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP  173 (227)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence            6788999999999853    3554  7888888766688889999997544331  1111     112488899999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||+|+|..
T Consensus       174 ~gifvItS  181 (227)
T KOG1271|consen  174 GGIFVITS  181 (227)
T ss_pred             CcEEEEEe
Confidence            99999976

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.35  E-value=0.016  Score=53.92  Aligned_cols=39  Identities=31%  Similarity=0.464  Sum_probs=33.0

Q ss_pred             cccEEEecCcCcccccChH---HHHHHHHhccCCCcEEEEEc
Q 041513           46 SFDVAHCSRCLVPWTSYDG---LYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        46 sFD~V~~s~~l~h~~~d~~---~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .||+|++++|+.--..+..   .+++.+.+.|||||+|++.+
T Consensus       158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            5999999999966666654   49999999999999999976

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK13699 putative methylase; Provisional

Probab=95.28  E-value=0.039  Score=50.20  Aligned_cols=44  Identities=16%  Similarity=0.111  Sum_probs=29.5

Q ss_pred             CCCCCcccEEEec--Cc--Cccccc----------ChHHHHHHHHhccCCCcEEEEEc
Q 041513           41 PYPSRSFDVAHCS--RC--LVPWTS----------YDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        41 Pfpd~sFD~V~~s--~~--l~h~~~----------d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+|++++|+|++.  +.  ..+...          -....+.|+.|||||||.+++..
T Consensus        15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699         15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            5788889998876  11  101000          01368899999999999988743

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=94.93  E-value=0.15  Score=47.45  Aligned_cols=87  Identities=22%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             CCCcHHHHHHHHHc----CC-C-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513           13 LDVHEAQVQFALER----GL-P-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        13 ~D~S~~mlq~A~er----gv-~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      .|..++..+.|+++    ++ + +.+...|....-+++ .||+|+.-      .++|-.++..+..+|||||.+++-.|-
T Consensus       125 yE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         125 YEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             EEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            48899999999875    33 3 555566766666666 89999743      235558999999999999999998873


Q ss_pred             CCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           87 ISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        87 ~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      +                +|.++.++.|.+. ||..+.
T Consensus       198 v----------------eQv~kt~~~l~~~-g~~~ie  217 (256)
T COG2519         198 V----------------EQVEKTVEALRER-GFVDIE  217 (256)
T ss_pred             H----------------HHHHHHHHHHHhc-Cccchh
Confidence            3                3455555555554 775543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.83  E-value=0.12  Score=52.47  Aligned_cols=75  Identities=9%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCc--------------cc-------cc
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLV--------------PW-------TS   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~--------------h~-------~~   61 (294)
                      .+...|+|+.+++.|+++    ++  .+.+..+|... +++++.||+|+|.--.+              |.       ..
T Consensus       164 ~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~  242 (506)
T PRK01544        164 NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE  242 (506)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence            466779999999999875    33  24455555322 34567899999842110              10       01


Q ss_pred             Ch----HHHHHHHHhccCCCcEEEEEc
Q 041513           62 YD----GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        62 d~----~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +.    ..++.++.++|+|||.+++..
T Consensus       243 dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        243 DGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             cHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            11    135678899999999998864

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=0.038  Score=48.51  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=53.9

Q ss_pred             CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceE
Q 041513           41 PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK  120 (294)
Q Consensus        41 Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~  120 (294)
                      ....++||+|+|+.|+ .+.+.-..+++-|.+.|||.|..++..|-            ....+++.++.++    ...+.
T Consensus        98 q~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPR------------Rg~sL~kF~de~~----~~gf~  160 (201)
T KOG3201|consen   98 QQEQHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPR------------RGQSLQKFLDEVG----TVGFT  160 (201)
T ss_pred             HHhhCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCc------------ccchHHHHHHHHH----hceeE
Confidence            3456799999999999 66666667999999999999998888871            2334555555444    33444


Q ss_pred             eee-cccceeEeeCCC
Q 041513          121 KIA-ERGPIAVWRKPT  135 (294)
Q Consensus       121 ~v~-~~~~~~iw~Kp~  135 (294)
                      ..- +..+..|||+..
T Consensus       161 v~l~enyde~iwqrh~  176 (201)
T KOG3201|consen  161 VCLEENYDEAIWQRHG  176 (201)
T ss_pred             EEecccHhHHHHHHHH
Confidence            333 334467888753

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.76  E-value=0.021  Score=49.84  Aligned_cols=42  Identities=29%  Similarity=0.398  Sum_probs=34.5

Q ss_pred             CCcccEEEecCcCcccc-----c-----ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           44 SRSFDVAHCSRCLVPWT-----S-----YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        44 d~sFD~V~~s~~l~h~~-----~-----d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .++||.+.|..++.|..     +     ....+++++.++|||||.|+++.|
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            57899999998887763     1     123699999999999999999986

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.75  E-value=0.11  Score=45.54  Aligned_cols=77  Identities=21%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecC--cCcccc-cCh----HHHHHHHHhcc
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSR--CLVPWT-SYD----GLYLMEIDRVL   74 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~--~l~h~~-~d~----~~~L~Ei~RVL   74 (294)
                      ..+.+.|+++.+++.|+++    ++  .+.+...|+..+++.++++|.|++.-  ....-. .+.    ..+++|+.|+|
T Consensus        62 ~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l  141 (179)
T PF01170_consen   62 LKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVL  141 (179)
T ss_dssp             --EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHS
T ss_pred             ccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHC
Confidence            3477899999999999874    44  35666778999999899999999863  221000 011    13789999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ++...++++.
T Consensus       142 ~~~~v~l~~~  151 (179)
T PF01170_consen  142 KPRAVFLTTS  151 (179)
T ss_dssp             TTCEEEEEES
T ss_pred             CCCEEEEEEC
Confidence            9955555544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.71  E-value=0.13  Score=46.52  Aligned_cols=75  Identities=19%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             eeeccCCCcHHHHHHHHH-cCC----------------CcEEEEccCCCCCCCC-CcccEEEecCcCcccccCh-HHHHH
Q 041513            8 MSFAPLDVHEAQVQFALE-RGL----------------PAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYD-GLYLM   68 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~e-rgv----------------~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~-~~~L~   68 (294)
                      ..+.+.|+|+..|+.|.+ ++.                .+.+.++|.-.++-.. +.||+|+=..+|+-...+. ....+
T Consensus        60 ~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~  139 (218)
T PF05724_consen   60 HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQ  139 (218)
T ss_dssp             EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHH
Confidence            467888999999999843 332                1345567766665444 4799999777775554333 36999


Q ss_pred             HHHhccCCCcEEEE
Q 041513           69 EIDRVLRPGGYWVV   82 (294)
Q Consensus        69 Ei~RVLKPGG~~vi   82 (294)
                      .+.++|||||.+++
T Consensus       140 ~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  140 QLASLLKPGGRGLL  153 (218)
T ss_dssp             HHHHCEEEEEEEEE
T ss_pred             HHHHHhCCCCcEEE
Confidence            99999999999444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.63  E-value=0.051  Score=50.94  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             eeeeccCCCcHHHHHHHHHc---------CCC-------------------------cEEEEccCCCCCCCCCcccEEEe
Q 041513            7 TMSFAPLDVHEAQVQFALER---------GLP-------------------------AMVGLLSTYQLPYPSRSFDVAHC   52 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~er---------gv~-------------------------~~~~v~d~~~LPfpd~sFD~V~~   52 (294)
                      -++|-+.|++...|+.|++-         +++                         +.|...+...-++..+.||+|+|
T Consensus       129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC  208 (268)
T COG1352         129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC  208 (268)
T ss_pred             ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEE
Confidence            46788889999999999641         211                         11122221111224567999999


Q ss_pred             cCcCcccccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513           53 SRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        53 s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      -.+++.+.... ..++..++..|+|||+|++-.
T Consensus       209 RNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         209 RNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             cceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence            99998776443 369999999999999999954

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=94.47  E-value=0.036  Score=52.62  Aligned_cols=70  Identities=21%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+.+..++.|+++    ++...+.+..  ...+....||+|+++-.. +   ....++..+.++|+|||+|++|+
T Consensus       186 ~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~-~---vL~~l~~~~~~~l~~~G~lIlSG  259 (295)
T PF06325_consen  186 KVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILA-D---VLLELAPDIASLLKPGGYLILSG  259 (295)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-H-H---HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred             eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCH-H---HHHHHHHHHHHhhCCCCEEEEcc
Confidence            355679999999999874    5544443332  233445999999987544 2   22357888999999999999998

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.11  E-value=0.12  Score=49.13  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH----HHHHHHHhccCCCcEEE
Q 041513           10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG----LYLMEIDRVLRPGGYWV   81 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~----~~L~Ei~RVLKPGG~~v   81 (294)
                      +.-.|++...|+.|++.    +++......+....+..+ +||+|+|.==+|.-..-..    +++.+..+.|++||.+.
T Consensus       185 vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~  263 (300)
T COG2813         185 LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW  263 (300)
T ss_pred             EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence            33459999999999874    344422233434445555 9999999877733332233    68999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       264 iVan  267 (300)
T COG2813         264 IVAN  267 (300)
T ss_pred             EEEc
Confidence            9874

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.05  E-value=0.091  Score=47.89  Aligned_cols=72  Identities=15%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CC-----CCCCcccEEEecCcCcccccChHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LP-----YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LP-----fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP   76 (294)
                      .+...|.++++++.|++.    |+.  +.+..+++.. |+     .++.+||+|++-.--    +.-..++.++.+.|||
T Consensus        95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k----~~y~~~~~~~~~ll~~  170 (234)
T PLN02781         95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK----PNYVHFHEQLLKLVKV  170 (234)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH----HHHHHHHHHHHHhcCC
Confidence            455669999999999864    442  4555566433 22     125689999875221    2223689999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||.+++..
T Consensus       171 GG~ii~dn  178 (234)
T PLN02781        171 GGIIAFDN  178 (234)
T ss_pred             CeEEEEEc
Confidence            99988743

>PHA03412 putative methyltransferase; Provisional

Probab=93.90  E-value=0.18  Score=46.63  Aligned_cols=72  Identities=8%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCc-----ccc------cChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLV-----PWT------SYDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~-----h~~------~d~~~~L~Ei~RVLKPG   77 (294)
                      .+...|+++.+++.|++....+.+...|....++ +++||+|++.==+.     +..      .....++....|+++||
T Consensus        78 ~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G  156 (241)
T PHA03412         78 EIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG  156 (241)
T ss_pred             EEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence            6778899999999999765556777778766665 56899999963221     110      11234788888977777


Q ss_pred             cEEEE
Q 041513           78 GYWVV   82 (294)
Q Consensus        78 G~~vi   82 (294)
                      +. |+
T Consensus       157 ~~-IL  160 (241)
T PHA03412        157 TF-II  160 (241)
T ss_pred             EE-Ee
Confidence            75 44

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=93.88  E-value=0.22  Score=46.22  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC--CCCCcccEEEecCcCc----------------c-cccC
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP--YPSRSFDVAHCSRCLV----------------P-WTSY   62 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~----------------h-~~~d   62 (294)
                      ..|.+.|+.++|.+.|++.    +.  .+.+.++|.....  +.-.+||+|+|.==+.                | ...+
T Consensus        69 a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~  148 (248)
T COG4123          69 AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD  148 (248)
T ss_pred             CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC
Confidence            3566779999999999874    12  3556666755442  3445899999963220                0 0112


Q ss_pred             hHHHHHHHHhccCCCcEEEEEcCC
Q 041513           63 DGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        63 ~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      -+..++-..++|||||+|.+..+|
T Consensus       149 le~~i~~a~~~lk~~G~l~~V~r~  172 (248)
T COG4123         149 LEDLIRAAAKLLKPGGRLAFVHRP  172 (248)
T ss_pred             HHHHHHHHHHHccCCCEEEEEecH
Confidence            345778888999999999999875

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=93.47  E-value=0.41  Score=48.35  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=51.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCc-EEEEccCCCCC-CCCCcccEEE----ecCcCcccccCh---------------
Q 041513            9 SFAPLDVHEAQVQFALER----GLPA-MVGLLSTYQLP-YPSRSFDVAH----CSRCLVPWTSYD---------------   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~-~~~v~d~~~LP-fpd~sFD~V~----~s~~l~h~~~d~---------------   63 (294)
                      .+...|+|+.-++..+++    |+.. .+...|+..++ .....||.|+    ||..= .+..++               
T Consensus       140 ~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G-~~rk~p~~~~~~s~~~v~~l~  218 (470)
T PRK11933        140 AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEG-TVRKDPDALKNWSPESNLEIA  218 (470)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCc-ccccCHHHhhhCCHHHHHHHH
Confidence            355669998888877653    6643 44456665542 3346799999    77432 222222               


Q ss_pred             ---HHHHHHHHhccCCCcEEEEEcC
Q 041513           64 ---GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 ---~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                         ..+|....+.|||||+++.|+=
T Consensus       219 ~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        219 ATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEECC
Confidence               3478889999999999999874

>PLN02366 spermidine synthase

Probab=93.14  E-value=0.22  Score=47.53  Aligned_cols=74  Identities=12%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             eccCCCcHHHHHHHHHcC---------CCcEEEEccCCCC--CCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513           10 FAPLDVHEAQVQFALERG---------LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL   74 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL   74 (294)
                      +.-.|+++.+++.|++.-         ..+.+...|+...  ..+++.||+|++-..- ++...    ...+++.+.+.|
T Consensus       118 V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~d-p~~~~~~L~t~ef~~~~~~~L  196 (308)
T PLN02366        118 IDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSD-PVGPAQELFEKPFFESVARAL  196 (308)
T ss_pred             EEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCC-CCCchhhhhHHHHHHHHHHhc
Confidence            334588899999998741         1345555664321  1246789999985443 33221    125899999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      +|||.++.-.
T Consensus       197 ~pgGvlv~q~  206 (308)
T PLN02366        197 RPGGVVCTQA  206 (308)
T ss_pred             CCCcEEEECc
Confidence            9999997744

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=92.84  E-value=0.54  Score=43.27  Aligned_cols=77  Identities=21%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             eeccCCCcHHHHHHHHHcC--CCcEEEEccCCC-CCC-CCCcccEEEecCcCccc------------c---------cC-
Q 041513            9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQ-LPY-PSRSFDVAHCSRCLVPW------------T---------SY-   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~-LPf-pd~sFD~V~~s~~l~h~------------~---------~d-   62 (294)
                      .+...|+|+.+++.|+++-  ....+...|... ++- ..+.||+|++.-=.+..            .         .+ 
T Consensus       112 ~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dg  191 (251)
T TIGR03704       112 ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADG  191 (251)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcH
Confidence            4567899999999998752  123555566432 221 13579999986311100            0         01 


Q ss_pred             ---hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 ---DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 ---~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                         ...++..+.++|||||.+++...
T Consensus       192 l~~~~~i~~~a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       192 LDVLRRVAAGAPDWLAPGGHLLVETS  217 (251)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence               12566777899999999998765

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=92.78  E-value=0.17  Score=46.06  Aligned_cols=70  Identities=24%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             eccCCCcHHHHHHHHHc----CCC--cEEEE-cc-CCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513           10 FAPLDVHEAQVQFALER----GLP--AMVGL-LS-TYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~--~~~~v-~d-~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      +.-.|..+++.+.|++.    |+.  +.... ++ .+.+. +..++||+|+.-    +...+-..++.++.+.|||||.+
T Consensus        87 l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGli  162 (219)
T COG4122          87 LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLI  162 (219)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEE
Confidence            44568999999999874    443  33334 23 22222 568999999865    22233338999999999999999


Q ss_pred             EEE
Q 041513           81 VVS   83 (294)
Q Consensus        81 vis   83 (294)
                      ++-
T Consensus       163 v~D  165 (219)
T COG4122         163 VAD  165 (219)
T ss_pred             EEe
Confidence            884

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.76  E-value=0.12  Score=54.41  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCC-CCCCCCcccEEEecC-cCc---------ccccChHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQ-LPYPSRSFDVAHCSR-CLV---------PWTSYDGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~-LPfpd~sFD~V~~s~-~l~---------h~~~d~~~~L~Ei   70 (294)
                      ++...|+|+.+++.|+++    ++.   +.+..+|+.. +.-..+.||+|++.- .+.         ....+-..++..+
T Consensus       563 ~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a  642 (702)
T PRK11783        563 STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDA  642 (702)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHH
Confidence            466789999999999874    342   5566666432 211156899999841 110         1111223578888


Q ss_pred             HhccCCCcEEEEEcC
Q 041513           71 DRVLRPGGYWVVSGP   85 (294)
Q Consensus        71 ~RVLKPGG~~vis~p   85 (294)
                      .++|+|||.++++..
T Consensus       643 ~~lL~~gG~l~~~~~  657 (702)
T PRK11783        643 KRLLRPGGTLYFSNN  657 (702)
T ss_pred             HHHcCCCCEEEEEeC
Confidence            999999999999764

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=92.68  E-value=0.26  Score=45.05  Aligned_cols=66  Identities=21%  Similarity=0.221  Sum_probs=48.1

Q ss_pred             HHHHHHHHcCC-CcEEEEccCCCC---CCCCCcccEEEecCcCcccccCh--------HHHHHHHHhccCCCcEEEEEc
Q 041513           18 AQVQFALERGL-PAMVGLLSTYQL---PYPSRSFDVAHCSRCLVPWTSYD--------GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        18 ~mlq~A~ergv-~~~~~v~d~~~L---Pfpd~sFD~V~~s~~l~h~~~d~--------~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+++.+.+.++ ++.+.+.|+..+   -+++++.|-|+..+-= +|+...        ..+++++.|+|||||.|.+.+
T Consensus        87 ~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220          87 KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC-CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            34445556688 777776674433   3466799999988876 665321        259999999999999999976

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=92.40  E-value=0.3  Score=48.57  Aligned_cols=77  Identities=19%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCC----CCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTY----QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~----~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+.+.|+|++|++.|+++    ++ ++.+..+|+.    .+++.+++||+|++.--.   .. ....+..+.+ ++|++.
T Consensus       321 ~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~i  395 (443)
T PRK13168        321 EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRI  395 (443)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeE
Confidence            567789999999999874    44 4667667653    245667889999875322   11 2245555555 699999


Q ss_pred             EEEEcCCCCcc
Q 041513           80 WVVSGPPISWK   90 (294)
Q Consensus        80 ~vis~pp~~~~   90 (294)
                      +++|..|..++
T Consensus       396 vyvSCnp~tla  406 (443)
T PRK13168        396 VYVSCNPATLA  406 (443)
T ss_pred             EEEEeChHHhh
Confidence            99999876543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=91.93  E-value=0.2  Score=45.12  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=46.3

Q ss_pred             eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +...|..+.+++.|+++    ++ ++.+.++|....--+...||.|++..+..   .    .-.++.+-||+||++++-.
T Consensus       100 Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~---~----ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  100 VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP---E----IPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS---S------HHHHHTEEEEEEEEEEE
T ss_pred             EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc---h----HHHHHHHhcCCCcEEEEEE
Confidence            44668889999999875    44 45666666443222456799999998772   1    2245667799999999965


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      .
T Consensus       173 ~  173 (209)
T PF01135_consen  173 G  173 (209)
T ss_dssp             S
T ss_pred             c
Confidence            4

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=91.76  E-value=0.25  Score=42.29  Aligned_cols=71  Identities=7%  Similarity=-0.101  Sum_probs=49.4

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhc--cCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRV--LRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RV--LKPGG~~vis   83 (294)
                      .+...|+++.|++.++++.   ..+.+..+|+..+++++..||.|++..-+ |..   ...+..+.+-  +.++|.|++-
T Consensus        37 ~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       37 RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence            4567799999999998863   24567778899999988889999887544 432   2344444432  4477887764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=91.48  E-value=0.23  Score=44.14  Aligned_cols=75  Identities=27%  Similarity=0.391  Sum_probs=47.8

Q ss_pred             eeccCCCcHHHHHHHHH----cCC-CcEEEEccCCC-C--CCCCCcccEEEecCcCcccccC--------hHHHHHHHHh
Q 041513            9 SFAPLDVHEAQVQFALE----RGL-PAMVGLLSTYQ-L--PYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDR   72 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~e----rgv-~~~~~v~d~~~-L--Pfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~R   72 (294)
                      .+.+.|++...+..|.+    +++ ++.+..+++.. +  -++++++|.|+..+-= +|...        ...++.++.|
T Consensus        43 n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD-PWpK~rH~krRl~~~~fl~~~~~  121 (195)
T PF02390_consen   43 NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD-PWPKKRHHKRRLVNPEFLELLAR  121 (195)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHH
T ss_pred             CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-CCcccchhhhhcCCchHHHHHHH
Confidence            34455666666666544    366 45555666665 3  3568999999987655 55431        1259999999


Q ss_pred             ccCCCcEEEEEc
Q 041513           73 VLRPGGYWVVSG   84 (294)
Q Consensus        73 VLKPGG~~vis~   84 (294)
                      +|+|||.|.+.+
T Consensus       122 ~L~~gG~l~~~T  133 (195)
T PF02390_consen  122 VLKPGGELYFAT  133 (195)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             HcCCCCEEEEEe
Confidence            999999999976

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=91.46  E-value=0.13  Score=48.01  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             EEEEccCCCC--CCCCCcccEEEec--CcC-cc-------cc-----cChHHHHHHHHhccCCCcEEEEEcC
Q 041513           31 MVGLLSTYQL--PYPSRSFDVAHCS--RCL-VP-------WT-----SYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        31 ~~~v~d~~~L--Pfpd~sFD~V~~s--~~l-~h-------~~-----~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+..+|....  .+++++||+|++.  +.+ ..       |.     +-....+.|+.|+|||||.|++...
T Consensus        10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524         10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            3444553332  4678999999984  221 00       10     0113588999999999999998643

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=90.42  E-value=1.1  Score=41.42  Aligned_cols=88  Identities=19%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             CCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCC---CCcccEEEecCcCcccccChHHHHHHHHhcc-CCCcEEEE
Q 041513           13 LDVHEAQVQFALER----GL--PAMVGLLSTYQLPYP---SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVL-RPGGYWVV   82 (294)
Q Consensus        13 ~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfp---d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVL-KPGG~~vi   82 (294)
                      .|.+++.++.|++.    |+  .+.+...|...-.|+   ++.||.|+.=      .++|-.++..+.++| ||||++..
T Consensus        71 ~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen   71 YEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD------LPDPWEAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             EESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEE------SSSGGGGHHHHHHHE-EEEEEEEE
T ss_pred             cccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEe------CCCHHHHHHHHHHHHhcCCceEEE
Confidence            38899999999864    44  356667776554453   3679999743      234558999999999 89999999


Q ss_pred             EcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           83 SGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        83 s~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      -.|-                ++|.++.++.|.+ ..|..+.
T Consensus       145 fsP~----------------ieQv~~~~~~L~~-~gf~~i~  168 (247)
T PF08704_consen  145 FSPC----------------IEQVQKTVEALRE-HGFTDIE  168 (247)
T ss_dssp             EESS----------------HHHHHHHHHHHHH-TTEEEEE
T ss_pred             ECCC----------------HHHHHHHHHHHHH-CCCeeeE
Confidence            8873                3566777776665 3576653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=90.22  E-value=2.1  Score=40.08  Aligned_cols=67  Identities=12%  Similarity=0.109  Sum_probs=44.5

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+.-.|+.+++++.|++--         ..+.+.. ..  ..-..++||+|++-...      +..+.+.+.|.|+|||.
T Consensus        96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIvDs~~------~~~fy~~~~~~L~~~Gi  166 (262)
T PRK00536         96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIICLQEP------DIHKIDGLKRMLKEDGV  166 (262)
T ss_pred             eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEEcCCC------ChHHHHHHHHhcCCCcE
Confidence            4555688999999998831         1122221 11  11124789999966432      24788999999999999


Q ss_pred             EEEEc
Q 041513           80 WVVSG   84 (294)
Q Consensus        80 ~vis~   84 (294)
                      ++.-.
T Consensus       167 ~v~Qs  171 (262)
T PRK00536        167 FISVA  171 (262)
T ss_pred             EEECC
Confidence            99944

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=90.11  E-value=0.1  Score=42.65  Aligned_cols=40  Identities=23%  Similarity=0.425  Sum_probs=26.6

Q ss_pred             cccEEEecCcC--cccc--cC-hHHHHHHHHhccCCCcEEEEEcC
Q 041513           46 SFDVAHCSRCL--VPWT--SY-DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        46 sFD~V~~s~~l--~h~~--~d-~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .||+|+|-.+-  +|..  ++ ...+++.+.+.|+|||+|++-..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            38999987654  2322  22 22489999999999999999653

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=89.81  E-value=0.49  Score=45.54  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=52.1

Q ss_pred             CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           44 SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        44 d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      .++||+|+.++-+ .-..+.-..+.-|..+|||||+++=.+|-.+--....|- ..+-.++-..+.|..+++.++|+.+.
T Consensus       257 ~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~k  334 (369)
T KOG2798|consen  257 AGSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEK  334 (369)
T ss_pred             CCccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEE
Confidence            3579999877444 333445579999999999999998888743311111111 01112333456677889999999988


Q ss_pred             cc
Q 041513          124 ER  125 (294)
Q Consensus       124 ~~  125 (294)
                      ++
T Consensus       335 e~  336 (369)
T KOG2798|consen  335 ER  336 (369)
T ss_pred             ee
Confidence            76

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=89.77  E-value=2.7  Score=37.47  Aligned_cols=69  Identities=19%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcE-EEEcc-CCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513           10 FAPLDVHEAQVQFALER----GLPAM-VGLLS-TYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~-~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      +...|-++++++..+++    +++.. +..++ .+.|+=.+ +||.|+..... +    ....|..+...|||||+++..
T Consensus        61 v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg~-~----i~~ile~~~~~l~~ggrlV~n  134 (187)
T COG2242          61 VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGGG-N----IEEILEAAWERLKPGGRLVAN  134 (187)
T ss_pred             EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCCC-C----HHHHHHHHHHHcCcCCeEEEE
Confidence            44557777887776543    56543 33344 33444222 89999998884 3    348999999999999999997


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       135 a  135 (187)
T COG2242         135 A  135 (187)
T ss_pred             e
Confidence            6

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=89.60  E-value=2.5  Score=40.32  Aligned_cols=113  Identities=24%  Similarity=0.340  Sum_probs=71.5

Q ss_pred             eeccCCCcHHHHHHHH----HcCCC--cEEEEccCC---CCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFAL----ERGLP--AMVGLLSTY---QLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~----ergv~--~~~~v~d~~---~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPG   77 (294)
                      ++--.|.|+.-|+..+    ++|+.  +.|...|+-   .+.--+-..++++.+..+.-+.++.  ...|.-+.+.|.||
T Consensus       163 ~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg  242 (311)
T PF12147_consen  163 SILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG  242 (311)
T ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence            5555699998888765    46764  256666532   2222244579999998885555543  24788999999999


Q ss_pred             cEEEEEcCC---CC------ccccC--CCcccChHHHHHHHHHHHHHHHhhceEeeecc
Q 041513           78 GYWVVSGPP---IS------WKTSY--RGWERDAKDLQKEQISLENLATRLCWKKIAER  125 (294)
Q Consensus        78 G~~vis~pp---~~------~~~~~--~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~  125 (294)
                      |++|.+..|   ..      ..+|.  +.|.=-    ...|.+|..|...-+++++.+.
T Consensus       243 G~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~aGF~K~~q~  297 (311)
T PF12147_consen  243 GYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEAAGFEKIDQR  297 (311)
T ss_pred             cEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHHcCCchhhhe
Confidence            999999843   21      11222  235210    1235677888777777766553

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=89.59  E-value=1.1  Score=41.76  Aligned_cols=43  Identities=26%  Similarity=0.528  Sum_probs=30.8

Q ss_pred             CCCCcccEEEecCc--Ccc--cccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513           42 YPSRSFDVAHCSRC--LVP--WTSYD-GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        42 fpd~sFD~V~~s~~--l~h--~~~d~-~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +....||+|+|-..  .+|  |.++. ..+|+.+.|.|.|||+|++--
T Consensus       162 ~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  162 MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence            45678999998532  123  34443 359999999999999998853

>PLN02823 spermine synthase

Probab=89.06  E-value=0.78  Score=44.36  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCC-CCCCCCCcccEEEecCcCccccc------ChHHHHH-HHH
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTY-QLPYPSRSFDVAHCSRCLVPWTS------YDGLYLM-EID   71 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~-~LPfpd~sFD~V~~s~~l~h~~~------d~~~~L~-Ei~   71 (294)
                      .+.-.|+.+++++.|++.-         ..+.+...|+. -+.-.++.||+|++-..- ++..      ....+++ .+.
T Consensus       129 ~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~d-p~~~~~~~~Lyt~eF~~~~~~  207 (336)
T PLN02823        129 KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLAD-PVEGGPCYQLYTKSFYERIVK  207 (336)
T ss_pred             eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCC-ccccCcchhhccHHHHHHHHH
Confidence            3445699999999998742         12444555533 334456789999976321 2111      1225777 899


Q ss_pred             hccCCCcEEEEEc
Q 041513           72 RVLRPGGYWVVSG   84 (294)
Q Consensus        72 RVLKPGG~~vis~   84 (294)
                      +.|+|||.+++-.
T Consensus       208 ~~L~p~Gvlv~q~  220 (336)
T PLN02823        208 PKLNPGGIFVTQA  220 (336)
T ss_pred             HhcCCCcEEEEec
Confidence            9999999998754

>TIGR00478 tly hemolysin TlyA family protein

Probab=88.70  E-value=2.6  Score=38.55  Aligned_cols=105  Identities=16%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcE-EEEccCCC-----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAM-VGLLSTYQ-----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~-~~v~d~~~-----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|++.+|+....+....+. +...+.+.     ++..-..||++++|.++         .|..+.+.|+| |.+++
T Consensus       100 ~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       100 EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTL  169 (228)
T ss_pred             EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEE
Confidence            46677999988887555443322 22223332     22222467877777654         47889999999 88888


Q ss_pred             EcCCCCcccc----CCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           83 SGPPISWKTS----YRGWERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        83 s~pp~~~~~~----~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      ...|..-..+    ..|-.++++...+....+...+....|+...
T Consensus       170 L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (228)
T TIGR00478       170 LFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK  214 (228)
T ss_pred             EcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence            7755432211    1244444444344444444455556665544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=88.56  E-value=1.1  Score=43.41  Aligned_cols=45  Identities=27%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             CCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcC
Q 041513           37 TYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        37 ~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+|-.    |+|++-+++|||.++.. ++|+-+..-|+|||.+++.+.
T Consensus       231 fq~~P~~----daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  231 FQDTPKG----DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             cccCCCc----CeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            4445544    39999999999987654 699999999999999999874

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=88.41  E-value=1.1  Score=42.20  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             eeeccCCCcHHHHHHHHH--c-----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALE--R-----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~e--r-----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..|..+|++++.++.|++  +     +-...+..+|....+..-..||+|+.+....--..+...+|..+.+.++||..+
T Consensus       147 ~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l  226 (276)
T PF03059_consen  147 ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARL  226 (276)
T ss_dssp             -EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEE
T ss_pred             CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEE
Confidence            456778999999999976  2     234566667776676666799999977555222235568999999999999999


Q ss_pred             EEE
Q 041513           81 VVS   83 (294)
Q Consensus        81 vis   83 (294)
                      ++-
T Consensus       227 ~~R  229 (276)
T PF03059_consen  227 VVR  229 (276)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            885

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=88.08  E-value=0.56  Score=46.27  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCC----CCCCCcccEEEecCcCcccccC----------hHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQL----PYPSRSFDVAHCSRCLVPWTSY----------DGLYL   67 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~L----Pfpd~sFD~V~~s~~l~h~~~d----------~~~~L   67 (294)
                      .+...|+|+.+++.|++.    ++.   +.+..+|+...    .-..++||+|++.-=.  +...          -..++
T Consensus       245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~--f~~~k~~l~~~~~~y~~l~  322 (396)
T PRK15128        245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK--FVENKSQLMGACRGYKDIN  322 (396)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC--CCCChHHHHHHHHHHHHHH
Confidence            456679999999999874    442   45666675432    1135689999976211  1111          11344


Q ss_pred             HHHHhccCCCcEEEEEc
Q 041513           68 MEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        68 ~Ei~RVLKPGG~~vis~   84 (294)
                      ....++|+|||.|+++.
T Consensus       323 ~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        323 MLAIQLLNPGGILLTFS  339 (396)
T ss_pred             HHHHHHcCCCeEEEEEe
Confidence            56789999999999865

>PLN02476 O-methyltransferase

Probab=87.20  E-value=0.7  Score=43.58  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             eccCCCcHHHHHHHHHc----CCC--cEEEEccC-CCCC-C----CCCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513           10 FAPLDVHEAQVQFALER----GLP--AMVGLLST-YQLP-Y----PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~--~~~~v~d~-~~LP-f----pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      +...|.+++.++.|++.    |+.  +.+..+++ +.|+ +    .+++||+|+.-.-    ...-..++..+.+.||||
T Consensus       146 V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~----K~~Y~~y~e~~l~lL~~G  221 (278)
T PLN02476        146 LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD----KRMYQDYFELLLQLVRVG  221 (278)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC----HHHHHHHHHHHHHhcCCC
Confidence            44558888888888753    553  55555553 2232 1    2468999986532    222336899999999999


Q ss_pred             cEEEEE
Q 041513           78 GYWVVS   83 (294)
Q Consensus        78 G~~vis   83 (294)
                      |.+++-
T Consensus       222 GvIV~D  227 (278)
T PLN02476        222 GVIVMD  227 (278)
T ss_pred             cEEEEe
Confidence            998874

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=86.20  E-value=0.72  Score=41.74  Aligned_cols=42  Identities=14%  Similarity=0.235  Sum_probs=31.9

Q ss_pred             CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513           43 PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        43 pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      +..++|.++...-+ | ......+.+++++.|||||.+++..|-
T Consensus       127 ~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         127 PTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             ccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            45566666655555 4 445568999999999999999998873

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.83  E-value=2.2  Score=38.66  Aligned_cols=68  Identities=18%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|..++..++|+++    |+ ++.+.+.| ...-++. ..||.|++..+. .-  -|    ..+.+-|||||++++
T Consensus        96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD-G~~G~~~~aPyD~I~Vtaaa-~~--vP----~~Ll~QL~~gGrlv~  167 (209)
T COG2518          96 RVVSIERIEELAEQARRNLETLGYENVTVRHGD-GSKGWPEEAPYDRIIVTAAA-PE--VP----EALLDQLKPGGRLVI  167 (209)
T ss_pred             eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC-cccCCCCCCCcCEEEEeecc-CC--CC----HHHHHhcccCCEEEE
Confidence            344457778889999764    55 44455555 3344544 789999998887 22  23    234567999999999


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      -.
T Consensus       168 Pv  169 (209)
T COG2518         168 PV  169 (209)
T ss_pred             EE
Confidence            55

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=85.30  E-value=1.8  Score=42.80  Aligned_cols=75  Identities=20%  Similarity=0.124  Sum_probs=50.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+.+.|+++.|++.|+++    ++ .+.+..+|+..    +++.+++||+|++.---   ..-...++.++.+ |+|+|.
T Consensus       316 ~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~i  391 (431)
T TIGR00479       316 SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERI  391 (431)
T ss_pred             EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEE
Confidence            467789999999999874    34 45666676543    34556789999864322   1112356666665 899999


Q ss_pred             EEEEcCCC
Q 041513           80 WVVSGPPI   87 (294)
Q Consensus        80 ~vis~pp~   87 (294)
                      ++++..|.
T Consensus       392 vyvsc~p~  399 (431)
T TIGR00479       392 VYVSCNPA  399 (431)
T ss_pred             EEEcCCHH
Confidence            99988654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=85.17  E-value=1.9  Score=40.83  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|.++.|++.|++.    ++ .+.+.++|+..+.. .++.||+|++.-=.   . .....+.+...-++|++.+++
T Consensus       197 ~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr---~-G~~~~~~~~l~~~~~~~ivyv  272 (315)
T PRK03522        197 QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR---R-GIGKELCDYLSQMAPRFILYS  272 (315)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC---C-CccHHHHHHHHHcCCCeEEEE
Confidence            567889999999999764    45 36677777665432 34679999876211   1 111234344455789999999


Q ss_pred             EcCCCCc
Q 041513           83 SGPPISW   89 (294)
Q Consensus        83 s~pp~~~   89 (294)
                      |..|...
T Consensus       273 sc~p~t~  279 (315)
T PRK03522        273 SCNAQTM  279 (315)
T ss_pred             ECCcccc
Confidence            9977654

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=84.55  E-value=2.1  Score=41.14  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             eeeccCCCcHHHHHHHHHcC----CC-cEE--EEccC----CCCCC--CCCcccEEEecC-cCcccccCh-HHHHHHHHh
Q 041513            8 MSFAPLDVHEAQVQFALERG----LP-AMV--GLLST----YQLPY--PSRSFDVAHCSR-CLVPWTSYD-GLYLMEIDR   72 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg----v~-~~~--~v~d~----~~LPf--pd~sFD~V~~s~-~l~h~~~d~-~~~L~Ei~R   72 (294)
                      ....|+|+|+++|+.+.++-    .| +.+  .+++-    ..+|-  ......+++... ++.++.++. ..+|+++.+
T Consensus       105 ~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~  184 (319)
T TIGR03439       105 VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA  184 (319)
T ss_pred             ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence            45789999999999997642    23 222  23331    11321  223466776554 676654332 258899999


Q ss_pred             -ccCCCcEEEEEc
Q 041513           73 -VLRPGGYWVVSG   84 (294)
Q Consensus        73 -VLKPGG~~vis~   84 (294)
                       .|+|||.|++..
T Consensus       185 ~~l~~~d~lLiG~  197 (319)
T TIGR03439       185 TALSPSDSFLIGL  197 (319)
T ss_pred             hhCCCCCEEEEec
Confidence             999999999976

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=84.17  E-value=1.7  Score=37.62  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             hHHHHHHHHhccCCCcEEEEEcCC
Q 041513           63 DGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        63 ~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      ....+.|+.|+|||||.+++....
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~~~~   58 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIFIDD   58 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred             HHHHHHHHHhhcCCCeeEEEEecc
Confidence            346899999999999999998753

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.33  E-value=3.3  Score=37.88  Aligned_cols=67  Identities=12%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             ccCCCcHHHHHHHHHcC---C------------CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccC
Q 041513           11 APLDVHEAQVQFALERG---L------------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLR   75 (294)
Q Consensus        11 ap~D~S~~mlq~A~erg---v------------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLK   75 (294)
                      .++|..++.++.++++-   +            ...+.+.|....--+.+.||.|||....       ....+++...|+
T Consensus       112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~  184 (237)
T KOG1661|consen  112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLK  184 (237)
T ss_pred             cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhc
Confidence            56678888888887641   1            2445566777666678889999998544       257788888999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||.+++-.
T Consensus       185 ~gGrllip~  193 (237)
T KOG1661|consen  185 PGGRLLIPV  193 (237)
T ss_pred             cCCeEEEee
Confidence            999999854

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=82.21  E-value=4.2  Score=34.61  Aligned_cols=97  Identities=23%  Similarity=0.206  Sum_probs=55.9

Q ss_pred             ccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC--CCCCcccEEEecCcCcccccC-----h---HHHHHHHHhcc
Q 041513           11 APLDVHEAQVQFALER----GL--PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSY-----D---GLYLMEIDRVL   74 (294)
Q Consensus        11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d-----~---~~~L~Ei~RVL   74 (294)
                      .+-|+-++.|+..++|    ++  .+.+...+-+.+.  .+.+.+|+|+.+...-+-.+.     +   -.+++.+.++|
T Consensus         3 yaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL   82 (140)
T PF06962_consen    3 YAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELL   82 (140)
T ss_dssp             EEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHE
T ss_pred             EEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhh
Confidence            3458888899888775    33  3555555433443  233589999988765343321     1   24999999999


Q ss_pred             CCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhce
Q 041513           75 RPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCW  119 (294)
Q Consensus        75 KPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW  119 (294)
                      +|||.+++..-|=            .+.-+++.+++++.++.+.-
T Consensus        83 ~~gG~i~iv~Y~G------------H~gG~eE~~av~~~~~~L~~  115 (140)
T PF06962_consen   83 KPGGIITIVVYPG------------HPGGKEESEAVEEFLASLDQ  115 (140)
T ss_dssp             EEEEEEEEEE--S------------TCHHHHHHHHHHHHHHTS-T
T ss_pred             ccCCEEEEEEeCC------------CCCCHHHHHHHHHHHHhCCc
Confidence            9999999986210            01113455667767666543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=82.16  E-value=1.9  Score=43.92  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             cCCCcHHHHHHH----HHcCCC-cEEEEccCCCC--CCCCCcccEEEecCcCcccccC--------hHHHHHHHHhccCC
Q 041513           12 PLDVHEAQVQFA----LERGLP-AMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRVLRP   76 (294)
Q Consensus        12 p~D~S~~mlq~A----~ergv~-~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RVLKP   76 (294)
                      +.|++..-+..|    .+.++. +.+...++..+  -|+++++|.|+..+-= +|...        ...++.++.|+|||
T Consensus       376 GiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~  454 (506)
T PRK01544        376 GVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPD-PWIKNKQKKKRIFNKERLKILQDKLKD  454 (506)
T ss_pred             EEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCC-CCCCCCCccccccCHHHHHHHHHhcCC
Confidence            334444444443    344654 33333343312  3789999999988776 66432        12599999999999


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      ||.+.+.+-
T Consensus       455 gG~i~~~TD  463 (506)
T PRK01544        455 NGNLVFASD  463 (506)
T ss_pred             CCEEEEEcC
Confidence            999999763

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=81.88  E-value=0.87  Score=45.01  Aligned_cols=77  Identities=19%  Similarity=0.110  Sum_probs=50.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccC-CCCCC---CCCcccEEEec---CcCc-----ccccChHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLST-YQLPY---PSRSFDVAHCS---RCLV-----PWTSYDGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~-~~LPf---pd~sFD~V~~s---~~l~-----h~~~d~~~~L~E   69 (294)
                      ++...|.|...|+.|+++    |+   .+.+.++|+ +-|..   ....||+|+.-   ++-.     ....+-..++.+
T Consensus       242 ~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~  321 (393)
T COG1092         242 EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDL  321 (393)
T ss_pred             ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHH
Confidence            445669999999999885    44   245666662 23332   23489999862   2210     111222358889


Q ss_pred             HHhccCCCcEEEEEcC
Q 041513           70 IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        70 i~RVLKPGG~~vis~p   85 (294)
                      ..++|+|||.++++..
T Consensus       322 ~~~iL~pgG~l~~~s~  337 (393)
T COG1092         322 ALRLLAPGGTLVTSSC  337 (393)
T ss_pred             HHHHcCCCCEEEEEec
Confidence            9999999999999874

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=81.78  E-value=1.9  Score=39.86  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=43.4

Q ss_pred             ccCCCcHHHHHHHHHc----CC--CcEEEEccC-CCCCC------CCCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513           11 APLDVHEAQVQFALER----GL--PAMVGLLST-YQLPY------PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus        11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~-~~LPf------pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      .-.|..++..+.|++.    |+  .+.+..+++ +-|+-      ..++||+|+.-.-    ...-...+..+.+.|+||
T Consensus       108 ~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~G  183 (247)
T PLN02589        108 LAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD----KDNYINYHKRLIDLVKVG  183 (247)
T ss_pred             EEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC----HHHhHHHHHHHHHhcCCC
Confidence            3346777888888653    54  345555553 22221      1368999986532    222336888889999999


Q ss_pred             cEEEE
Q 041513           78 GYWVV   82 (294)
Q Consensus        78 G~~vi   82 (294)
                      |.+++
T Consensus       184 Gviv~  188 (247)
T PLN02589        184 GVIGY  188 (247)
T ss_pred             eEEEE
Confidence            99877

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=81.52  E-value=0.7  Score=42.27  Aligned_cols=67  Identities=16%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             CCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCC-CcEEEEEc
Q 041513           13 LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP-GGYWVVSG   84 (294)
Q Consensus        13 ~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP-GG~~vis~   84 (294)
                      .+.|..|..+.++++..+... .+-.+   .+-.||+|.|-..| .-..++..+|+.|+-||+| .|..|++-
T Consensus       140 TElS~tMr~rL~kk~ynVl~~-~ew~~---t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  140 TELSWTMRDRLKKKNYNVLTE-IEWLQ---TDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             HHhhHHHHHHHhhcCCceeee-hhhhh---cCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            388999999998887654332 12111   24459999998877 5566888999999999999 99988864

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=81.37  E-value=1.7  Score=37.61  Aligned_cols=42  Identities=24%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           43 PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        43 pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ....||+|+++.|++ .......++.-+.++|+|+|.++++.+
T Consensus       116 ~~~~~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  116 EPHSFDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             S-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             ccccCCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            456899999999994 455556899999999999999777764

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-07
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-07
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	6e-07
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	7e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	7e-06
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-05
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	3e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	4e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	5e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-04
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	1e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	3e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	4e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	6e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	7e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	7e-04

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 13  LDVHEAQVQFALER----GLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLY 66
           LD     +          GL   V  +  S   LP+ +   D+      +  +       
Sbjct: 75  LDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI--YNIGFERG 132

Query: 67  LMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDA 100
           L E  + L+ GGY  VS    SW T  R  E + 
Sbjct: 133 LNEWRKYLKKGGYLAVS--ECSWFTDERPAEIND 164

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 13  LDVHEAQVQFALERGLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEI 70
           +D+ E  +Q   ERG    +  +      LP+ +  F+       L          L EI
Sbjct: 81  VDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLR-ALNEI 139

Query: 71  DRVLRPGGYWVVSGPPISWKTSYRGWER 98
            RVL+  GY  ++    + K     + R
Sbjct: 140 KRVLKSDGYACIAILGPTAKPRENSYPR 167

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 13  LDVHEAQVQFALERGLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEI 70
           +D+ E  +  A  +    +V     +   +     +++V   S  L  + +       ++
Sbjct: 73  IDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLAL-HYIASFDDICKKV 131

Query: 71  DRVLRPGGYWVVSGP-PISWKTSYRGWERDAK 101
              L+  G ++ S   P+      + W  D  
Sbjct: 132 YINLKSSGSFIFSVEHPVFTADGRQDWYTDET 163

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 13  LDVHEAQVQFALERGLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEI 70
           LD+ E  +  A   G    +        +L  P  SFD+A  S   + +          +
Sbjct: 72  LDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA-YSSLALHYVEDVARLFRTV 130

Query: 71  DRVLRPGGYWVVSGP-PISWKTSYRGWERDA 100
            + L PGG++V S   PI    +  GW  DA
Sbjct: 131 HQALSPGGHFVFSTEHPIYMAPARPGWAIDA 161

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 13  LDVHEAQVQFALER----GLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLY 66
           +D+    ++   E          V  +  S   LP+ +   D+      +  +       
Sbjct: 75  IDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI--YNIGFERG 132

Query: 67  LMEIDRVLRPGGYWVVSGPPISWKTSYRGWE 97
           + E  + L+ GG+  VS    SW TS R  E
Sbjct: 133 MNEWSKYLKKGGFIAVSE--ASWFTSERPAE 161

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 13  LDVHEAQVQFALER----GLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLY 66
           + +   QV  A  R    GL   V         LP+   SFD       L          
Sbjct: 90  ISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGR-A 148

Query: 67  LMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAER 125
           L E+ RVLRPGG   ++           G +++A D  +    + +L     ++    +
Sbjct: 149 LREMARVLRPGGTVAIAD--FVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 13  LDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYL 67
           +++ + Q++ A            +      +LP+   S    +    +      D    +
Sbjct: 52  IEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAI 111

Query: 68  MEIDRVLRPGGYWVVS 83
            EI RVL+PGG   ++
Sbjct: 112 DEIKRVLKPGGLACIN 127

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLST-----YQLPYPSRSFDVAHCSRCLVPWTSYDGLYL 67
           +D+    ++ A E      +  +       + LP+   SFD       L    S +   L
Sbjct: 67  IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE-AL 125

Query: 68  MEIDRVLRPGGYWVV 82
             + +VL+PGG   V
Sbjct: 126 KSLKKVLKPGGTITV 140

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR 72
           +D++   ++   E+   +++ L  +     P  S D    +             + E+ R
Sbjct: 45  IDINVIALKEVKEK-FDSVITL--SDPKEIPDNSVDFILFANSF-HDMDDKQHVISEVKR 100

Query: 73  VLRPGGYWVV-----SGPPISWKTSYRGWERDAKDL 103
           +L+  G  ++         I    S R  E+D    
Sbjct: 101 ILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGW 136

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 13  LDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYL 67
           +D+ E  ++ A E            +    +L +  ++FD       +V +   +     
Sbjct: 66  VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVF 125

Query: 68  MEIDRVLRPGG---------YWVVSGPPISWKTSYRGWERDAKDLQKEQISLEN 112
            E+ RVL+P G           ++     S     + W       Q+E+  +  
Sbjct: 126 KEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIE 179

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 8/86 (9%)

Query: 13  LDVHEAQVQFALER-GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID 71
           ++      Q A+    +    G      L  P +S D       +    S+      E+ 
Sbjct: 62  VEPSIVMRQQAVVHPQVEWFTG--YAENLALPDKSVDGVISILAI-HHFSHLEKSFQEMQ 118

Query: 72  RVLRPGG----YWVVSGPPISWKTSY 93
           R++R G      + +      W   Y
Sbjct: 119 RIIRDGTIVLLTFDIRLAQRIWLYDY 144

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 21  QFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW 80
           Q A E+G+       +       + +++      C +P +        ++ + L+PGG +
Sbjct: 69  QLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVF 127

Query: 81  VVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE-----------RGPIA 129
           ++ G          G  +D   L K + +L++    L W                +G  A
Sbjct: 128 ILEGFAPEQLQYNTGGPKDLDLLPKLE-TLQSELPSLNWLIANNLERNLDEGAYHQGKAA 186

Query: 130 ----VWRKPTNHLH 139
               + +K  +H H
Sbjct: 187 LIQLLGQKLEHHHH 200

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEID 71
           ++  E   + A +RG+  + G  +   LP    SFD A     +      D    L E  
Sbjct: 71  VEPSERMAEIARKRGVFVLKG--TAENLPLKDESFDFALMVTTI--CFVDDPERALKEAY 126

Query: 72  RVLRPGGYWVVSGP-PISWKTSYRGWERDAKDL 103
           R+L+ GGY +V      S+        ++    
Sbjct: 127 RILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 13  LDVHEAQVQFALER--GLPAMVGLLSTYQLPYPSRSFDVAHCSRCL--VPWTSYDGLYLM 68
           L+     V+ A +    +    G ++   L    + +        L  +         L+
Sbjct: 69  LEPATRLVELARQTHPSVTFHHGTIT--DLSDSPKRWAGLLAWYSLIHMGPGELPDA-LV 125

Query: 69  EIDRVLRPGGYWVVS 83
            +   +  GG  ++S
Sbjct: 126 ALRMAVEDGGGLLMS 140

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 13  LDVHEAQVQFALER--GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLY--LM 68
            D+    + +A +       +VG             FD+   +  ++ + + DG    L 
Sbjct: 74  TDLDPILIDYAKQDFPEARWVVG--DLSVDQISETDFDLIVSAGNVMGFLAEDGREPALA 131

Query: 69  EIDRVLRPGGYWVVS 83
            I R L   G  V+ 
Sbjct: 132 NIHRALGADGRAVIG 146

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 38  YQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV---SGPPIS-WKTSY 93
            Q+P+    F +  C      + +    ++ E  RVL+ GG  ++   S P    +   Y
Sbjct: 95  EQMPFTDERFHIVTCRIAAHHFPNPA-SFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFY 153

Query: 94  RGWERDA 100
              E++ 
Sbjct: 154 NYVEKER 160

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 38  YQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83
             LP+P  SFD+  C      ++      + E+ RVL+  G +++ 
Sbjct: 79  ESLPFPDDSFDIITCRYAAHHFSDVR-KAVREVARVLKQDGRFLLV 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 56/235 (23%)

Query: 45  RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISW-------KTSYRGW- 96
            +F++  C + L+  T+       ++   L       +S    S        K+    + 
Sbjct: 260 NAFNL-SC-KILL--TTRF----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 97  ERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKS 156
           +   +DL +E ++       +  + I  R  +A W     H++C +    ++S    +  
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESI--RDGLATW-DNWKHVNCDKLTTIIES---SLNV 365

Query: 157 -DPD---------AV---------------WYTKMEPCVTPLPMVNEIKDVAGGALEKWP 191
            +P          +V               W+  ++     + +VN++       +EK P
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKY--SLVEKQP 421

Query: 192 KRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILESLFSGKFRNIMDM 246
           K        I S ++E         +  L +  V HY I             +D 
Sbjct: 422 KESTI---SIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCL--VPWTSYDGLYLMEI 70
           +D++E  ++F  E     +      Y    P +  D    S  +  +       L L   
Sbjct: 69  VDINEDMIKFC-EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFEL-LSLC 126

Query: 71  DRVLRPGGYWVVSGP-PISWKTSYRGW 96
              ++   Y V+  P P S  +    +
Sbjct: 127 YSKMKYSSYIVIESPNPTSLYSLINFY 153

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 39  QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83
           Q+P    S DVA     L+  T+    +L E +RVL+PGG   V+
Sbjct: 108 QVPLEDESVDVAVFCLSLM-GTNIRD-FLEEANRVLKPGGLLKVA 150

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 21/111 (18%)

Query: 6   LTMSFAP-------LDVHEAQVQFALERGLPAMVGLLST-YQLPYPSRS-FDVAHCSRCL 56
               F P        D     ++ A      A V   +   +LP    + F +    R  
Sbjct: 62  DAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGP 121

Query: 57  VPWTSYDGLYLMEIDRVLRPGGYWVVSGP-----PISWKTSYRGWERDAKD 102
                     ++ +  +  P  +++  GP      +  + +  GW+  A+D
Sbjct: 122 TSV-------ILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAED 165

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 13  LDVHEAQV----QFALERGLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYD-GL 65
           LD  +       +   +  L   + ++    + +P      D+   SR  V +   D   
Sbjct: 72  LDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSV-FFWEDVAT 129

Query: 66  YLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAER 125
              EI R+L+ GG   + G             ++ +D    ++  +N   +   +K   +
Sbjct: 130 AFREIYRILKSGGKTYIGGGF---------GNKELRDSISAEMIRKNPDWKEFNRKNISQ 180

Query: 126 GPIAVWRK 133
             +  ++ 
Sbjct: 181 ENVERFQN 188

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCL--V--PWTSYDGLYLM 68
           ++      + A E+    ++G + T  +PY    FD       L  +  PW       + 
Sbjct: 60  IEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWA-----VIE 114

Query: 69  EIDRVLRPGGYWVVSGP---PISWKTSYRGWERDAKDLQK 105
           ++   ++  G  + S P    IS             +   
Sbjct: 115 KVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGL 154

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR 72
           ++  EA +     R   A         LP+P  SFDV      L      + + L+E  R
Sbjct: 62  VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERV-LLEARR 120

Query: 73  VLRPGGYWVVS--GPPISWKTSYRGWER 98
           VLRPGG  VV        W   YR    
Sbjct: 121 VLRPGGALVVGVLEALSPWAALYRRLGE 148

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 38  YQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVV------SGPPISWK 90
             +P P  S                D    L E  RVL+PGG  +       + P  + +
Sbjct: 96  RAIPLPDESVHGVIVVHLW--HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQ 153

Query: 91  TSYRGWERD 99
             +R +  +
Sbjct: 154 ERWRAFAAE 162

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 40  LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83
           +P P  + D    +      +     +L E+ RV +P  Y  + 
Sbjct: 100 IPLPDNTVDFIFMAFTFHELSEPLK-FLEELKRVAKPFAYLAII 142

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 13  LDVHEAQVQFALERGLPAMVGLLSTYQ-----LPYPSRSFDVAHCSRCLVPWTSYDGLYL 67
           +D     V  A   G       L++Y           + +D+  C+   +       L L
Sbjct: 80  VDGDRTLVDAARAAGAGE--VHLASYAQLAEAKVPVGKDYDLI-CANFALLHQDIIEL-L 135

Query: 68  MEIDRVLRPGGYWVVS 83
             +  +L PGG  V+ 
Sbjct: 136 SAMRTLLVPGGALVIQ 151

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 13  LDVHEAQVQFALER----GLPAMVG--LLSTYQLPYPSRSFDV--AHCSRCLVPWTSYDG 64
           L++   Q +   E     GL   +     S  ++P    S+D   +  +    P      
Sbjct: 111 LNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP--DKLK 168

Query: 65  LYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE 124
           ++  E  RVL+P G   ++             +   + +  ++I L ++ +   ++ +A+
Sbjct: 169 VF-QECARVLKPRGVMAIT----DPMKEDGIDKSSIQPI-LDRIKLHDMGSLGLYRSLAK 222

Query: 125 R 125
            
Sbjct: 223 E 223

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 13  LDVHEAQVQFALER--GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEI 70
           LDV +  ++ A +R   +   V   S+++LP+   S D                    E+
Sbjct: 115 LDVSKVAIKAAAKRYPQVTFCVA--SSHRLPFSDTSMDAIIRIYAPCKAE--------EL 164

Query: 71  DRVLRPGGYWVVSGPPISWKTSYRGW---ERDAKDLQKEQI 108
            RV++PGG+ + + P        +G    E        EQ+
Sbjct: 165 ARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQL 205

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 23  ALERGLPAMVGLLSTYQ------LPYPSRSFDVAHCSRCL--VPWTSYDGLYLMEIDRVL 74
           A   GL    G  + ++      L +   SFD A     L  VP        + E+ RVL
Sbjct: 72  ARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVL 131

Query: 75  RPGGYWVVS 83
           +PG Y  + 
Sbjct: 132 KPGAYLYLV 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.15
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.12
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.02
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.0
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.98
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.95
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.94
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.93
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.93
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.92
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.92
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.92
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.91
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.9
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.9
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.89
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.88
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.88
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.88
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.86
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.86
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.85
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.85
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.84
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.84
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.84
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.83
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.81
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.81
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.8
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.8
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.78
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.78
3ocj_A	305	Putative exported protein; structural genomics, PS	98.77
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.77
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.77
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.75
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.75
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.73
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.73
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.73
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.73
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.72
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.72
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.71
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.71
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.71
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.7
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.69
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.66
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.66
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.66
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.65
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.62
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.62
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.62
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.61
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.61
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.6
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.59
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.56
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.54
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.52
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.48
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.47
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.47
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.47
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.46
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.46
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.46
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.45
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.43
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.4
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.38
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.37
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.34
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.34
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.34
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.34
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.32
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.29
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.28
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.25
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.24
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.22
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.22
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.2
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.2
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.19
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.19
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.19
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.18
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.18
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.17
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.15
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.14
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.13
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.12
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.11
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.1
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.06
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.04
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.04
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.04
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.03
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.0
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.99
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.99
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.98
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.98
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.98
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.97
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.95
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.95
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.92
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.92
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.91
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.9
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.89
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.87
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.86
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.85
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.85
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.84
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.84
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.84
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.84
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.83
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.82
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.82
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.81
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.81
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.81
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.8
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.8
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.8
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.79
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.78
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.78
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.76
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.76
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.75
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.73
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.72
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.72
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.71
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.7
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.7
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.7
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.69
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.68
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.68
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.68
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.67
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.67
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.67
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.66
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.65
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.65
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.65
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.62
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.59
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.59
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.55
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.49
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.49
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.49
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.49
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.47
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.42
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.4
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.4
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.38
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.34
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.34
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.31
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.28
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.27
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.26
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.26
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.25
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.24
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.23
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.22
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.21
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.2
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.2
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.18
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.17
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.17
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.15
2o07_A	304	Spermidine synthase; structural genomics, structur	97.13
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.12
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.11
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.11
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.1
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.09
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.07
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.03
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.01
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.0
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.96
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.89
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.82
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.79
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.78
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.77
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.72
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.7
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.69
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.68
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.66
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.59
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.58
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.58
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.55
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.55
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.51
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.47
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.45
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.32
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.31
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.16
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	95.9
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	95.89
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	95.82
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.65
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	95.6
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	95.57
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	95.37
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.29
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	95.25
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	94.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	94.4
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	94.31
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.09
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	94.0
3k6r_A	278	Putative transferase PH0793; structural genomics,	93.67
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	93.58
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.56
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.21
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	92.99
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.97
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	92.93
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	92.5
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	92.39
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	91.74
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	91.32
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.83
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	89.56
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	89.52
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	88.77
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	88.61
3khk_A	544	Type I restriction-modification system methylation	88.48
3cvo_A	202	Methyltransferase-like protein of unknown functio;	87.89
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	87.21
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	87.13
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	86.71
3lkd_A	542	Type I restriction-modification system methyltrans	86.56
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	86.01
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	82.62
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	80.08

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.15  E-value=1.3e-11  Score=112.27  Aligned_cols=74  Identities=24%  Similarity=0.347  Sum_probs=64.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|++|++.|+++ ..+.+.+++++.+||++++||+|+|+.++ ||.+ +..+++|+.|+|||||.|++...
T Consensus        63 ~v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~-~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           63 RVHAVDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFD-LDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             EEEEEESCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEeCcHHhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeeh-hHhh-HHHHHHHHHHHcCCCCEEEEEEC
Confidence            456779999999998754 35778888999999999999999999999 7764 56899999999999999998763

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.12  E-value=5.6e-11  Score=99.91  Aligned_cols=73  Identities=25%  Similarity=0.229  Sum_probs=62.8

Q ss_pred             CCCcHHHHHHHHHcCC-CcEEEEccCCCCCC---CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           13 LDVHEAQVQFALERGL-PAMVGLLSTYQLPY---PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        13 ~D~S~~mlq~A~ergv-~~~~~v~d~~~LPf---pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .|+|++|++.|+++.. .+.+.+++.+.+++   ++++||+|+|+.+++|...+...+|+|+.|+|||||+|++..+
T Consensus        26 vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           26 VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            7999999999998742 47777888888888   8999999999999955426777999999999999999999654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.02  E-value=2.2e-10  Score=101.84  Aligned_cols=76  Identities=18%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+.++|.+.+||++++||+|+|..+++| ..++..+|+|+.|+|||||+|+++
T Consensus        61 ~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A           61 KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHH-FPNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHh-cCCHHHHHHHHHHHcCCCCEEEEE
Confidence            567789999999999875    44 367778899999999999999999999955 567779999999999999999997


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       140 ~~  141 (260)
T 1vl5_A          140 DN  141 (260)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.00  E-value=4.6e-10  Score=96.42  Aligned_cols=76  Identities=30%  Similarity=0.268  Sum_probs=67.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+.+.+...+|+++++||+|+|..+++| ..++..+++|+.|+|||||+++++.+
T Consensus        58 ~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           58 QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEF-VEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTT-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhh-cCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            56788999999999999865567777888999999999999999999955 45777999999999999999999885

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.98  E-value=4.3e-10  Score=96.03  Aligned_cols=110  Identities=10%  Similarity=0.011  Sum_probs=83.0

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEEcCCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                      .+.+.|+|+.|++.|+++...+.+.+++...+|+++++||+|+|..+++|+. ++...+|+++.|+|||||+++++.+..
T Consensus        65 ~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           65 QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            5677899999999999987678888889999999999999999999997765 366789999999999999999987321


Q ss_pred             C-ccccCCC----cccChHHHHHHHHHHHHHHHhhceEeeecc
Q 041513           88 S-WKTSYRG----WERDAKDLQKEQISLENLATRLCWKKIAER  125 (294)
Q Consensus        88 ~-~~~~~~~----w~~~~e~l~~~~~~le~l~~~lcW~~v~~~  125 (294)
                      . +......    +..+       ...+.++++..+|+.+...
T Consensus       145 ~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~Gf~~~~~~  180 (203)
T 3h2b_A          145 PSLEPMYHPVATAYRWP-------LPELAQALETAGFQVTSSH  180 (203)
T ss_dssp             SSCEEECCSSSCEEECC-------HHHHHHHHHHTTEEEEEEE
T ss_pred             CchhhhhchhhhhccCC-------HHHHHHHHHHCCCcEEEEE
Confidence            1 1100000    1112       2346677777888877653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.95  E-value=2.2e-10  Score=104.31  Aligned_cols=75  Identities=11%  Similarity=0.009  Sum_probs=59.5

Q ss_pred             eeccCCCcHHHHHHHHHc-----CCC-cEE--EEccCCCCC------CCCCcccEEEecCcCcccccChHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALER-----GLP-AMV--GLLSTYQLP------YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-----gv~-~~~--~v~d~~~LP------fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVL   74 (294)
                      .+.+.|+|++|++.|+++     +++ +.+  ...+++.++      |++++||+|+|+.++ ||.+++..+|+|+.|+|
T Consensus        84 ~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l-~~~~d~~~~l~~~~r~L  162 (292)
T 2aot_A           84 NNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML-YYVKDIPATLKFFHSLL  162 (292)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCG-GGCSCHHHHHHHHHHTE
T ss_pred             eEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeee-eecCCHHHHHHHHHHHc
Confidence            347899999999999875     332 233  334444443      779999999999999 56678889999999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||+|++..
T Consensus       163 kpgG~l~i~~  172 (292)
T 2aot_A          163 GTNAKMLIIV  172 (292)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999999975

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.94  E-value=3.2e-09  Score=91.50  Aligned_cols=121  Identities=17%  Similarity=0.073  Sum_probs=84.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+...+...+++++++||+|++..+++|+ .++..+++++.|+|||||+++++
T Consensus        64 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~  142 (219)
T 3dh0_A           64 KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHEL-SEPLKFLEELKRVAKPFAYLAII  142 (219)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGGC-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhhhc-CCHHHHHHHHHHHhCCCeEEEEE
Confidence            567789999999999875    44 4777788899999999999999999999555 57779999999999999999998


Q ss_pred             cCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeeccc-----ceeEeeCCC
Q 041513           84 GPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERG-----PIAVWRKPT  135 (294)
Q Consensus        84 ~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~-----~~~iw~Kp~  135 (294)
                      ................     -..+.+.++++..+|+.+....     ...+.+|+.
T Consensus       143 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~  194 (219)
T 3dh0_A          143 DWKKEERDKGPPPEEV-----YSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVK  194 (219)
T ss_dssp             EECSSCCSSSCCGGGS-----CCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC-
T ss_pred             EecccccccCCchhcc-----cCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEecc
Confidence            6311100000000000     0123466677778887765322     145677764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.93  E-value=7.2e-10  Score=96.36  Aligned_cols=75  Identities=16%  Similarity=0.067  Sum_probs=64.4

Q ss_pred             eeccCCCcHHHHHHHHHcCC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHH-hccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID-RVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~-RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++.. .+.+.+.+.+.+ +++++||+|+|..+++|+ .++..+|+|+. |+|||||+++++.+
T Consensus        66 ~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A           66 DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC-SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh-cCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            46678999999999998754 567777887777 578999999999999654 57779999999 99999999999885

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.93  E-value=4.3e-10  Score=97.54  Aligned_cols=76  Identities=7%  Similarity=0.016  Sum_probs=61.7

Q ss_pred             eeeccCCCcHHHHHHHHHc-----------------CCCcEEEEccCCCCCCCC-CcccEEEecCcCcccccC-hHHHHH
Q 041513            8 MSFAPLDVHEAQVQFALER-----------------GLPAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSY-DGLYLM   68 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er-----------------gv~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d-~~~~L~   68 (294)
                      ..+.+.|+|+.||+.|+++                 ...+.+.++|...+|+++ ++||+|++..+++|+..+ ...+++
T Consensus        45 ~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~  124 (203)
T 1pjz_A           45 YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQ  124 (203)
T ss_dssp             CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHH
Confidence            3678889999999999876                 235778889999999886 899999999999665432 235899


Q ss_pred             HHHhccCCCcEEEEE
Q 041513           69 EIDRVLRPGGYWVVS   83 (294)
Q Consensus        69 Ei~RVLKPGG~~vis   83 (294)
                      |+.|+|||||++++.
T Consensus       125 ~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A          125 HLEALMPQACSGLLI  139 (203)
T ss_dssp             HHHHHSCSEEEEEEE
T ss_pred             HHHHHcCCCcEEEEE
Confidence            999999999984443

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.92  E-value=1.2e-09  Score=96.42  Aligned_cols=74  Identities=20%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             eeccCCCcHHHHHHHHHcC----CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG----LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++.    ..+.+.+.+.+.+|+++++||+|+|..++ |+..++..+++++.|+|||||++++.
T Consensus        63 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           63 RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW-HLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG-GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch-hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            5677899999999999872    35777788899999999999999999999 55667779999999999999999997

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.92  E-value=1.6e-09  Score=92.46  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=67.5

Q ss_pred             eeeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            7 TMSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ...+.+.|+|+.|++.|+++    ++  .+.+.+.+...+|+++++||+|+|..+++|+ .++..+++++.|+|||||++
T Consensus        66 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l  144 (219)
T 3dlc_A           66 DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKT  144 (219)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEE
Confidence            34677889999999999886    33  4677888999999999999999999999665 67779999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++.+
T Consensus       145 ~~~~~  149 (219)
T 3dlc_A          145 YIGGG  149 (219)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99863

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.92  E-value=5.3e-09  Score=90.12  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             eeccCCCcHHHHHHHHHcCC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHH--HHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGL--YLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~--~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++.. .+.+.+++...+|++ ++||+|+|..+++|+ .++..  +|+++.|+|||||+++++.+
T Consensus        69 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A           69 TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL-TDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGS-CHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcC-ChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            56788999999999998754 566777889999998 999999999999554 45545  99999999999999999874

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=1.7e-09  Score=97.32  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+.+++.+.+|+ +++||+|+|..++ |+..++..+|+|+.|+|||||++++..+
T Consensus        81 ~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A           81 EVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAML-HWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchh-hhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            5677899999999999886556777789889998 6899999999999 5566788999999999999999999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.90  E-value=1.2e-09  Score=96.48  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=66.5

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+.+.|.+.++ ++++||+|+|..++ |+..++..+|+++.|+|||||+++++.+
T Consensus        59 ~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           59 VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVF-QWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCG-GGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCch-hhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            466779999999999988666788888988888 88999999999999 5567788999999999999999999875

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.90  E-value=6.3e-09  Score=89.92  Aligned_cols=123  Identities=13%  Similarity=0.064  Sum_probs=83.4

Q ss_pred             eeeccCCCcHHHHHHHHHcC----C------CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccC
Q 041513            8 MSFAPLDVHEAQVQFALERG----L------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLR   75 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg----v------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLK   75 (294)
                      ..+.+.|+|+.|++.|+++.    +      .+.+.+.+...+++++++||+|+|..+++|+ .++  ..+++++.|+||
T Consensus        54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~Lk  132 (219)
T 3jwg_A           54 EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTR  132 (219)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhC
Confidence            35678899999999998862    2      4677778888889999999999999999666 433  579999999999


Q ss_pred             CCcEEEEEcCCCC---c----------cccCCCcccChHHHHHHHHHHHHHHHhhceEeeec-----------ccceeEe
Q 041513           76 PGGYWVVSGPPIS---W----------KTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE-----------RGPIAVW  131 (294)
Q Consensus        76 PGG~~vis~pp~~---~----------~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~-----------~~~~~iw  131 (294)
                      |||.++.+....+   +          ..+...|  +.+++   ...++++++...++....           -.++++.
T Consensus       133 pgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l---~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~  207 (219)
T 3jwg_A          133 PQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEW--TRKEF---QTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVF  207 (219)
T ss_dssp             CSEEEEEEEBGGGGGCCCCT-----GGGCCTTSB--CHHHH---HHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEE
T ss_pred             CCEEEEEccchhhhhhhcccCcccccccCceeee--cHHHH---HHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEE
Confidence            9996666532111   1          0111112  33333   334556777777766543           1127788


Q ss_pred             eCCCC
Q 041513          132 RKPTN  136 (294)
Q Consensus       132 ~Kp~~  136 (294)
                      +|.+.
T Consensus       208 ~~~~~  212 (219)
T 3jwg_A          208 TLGAG  212 (219)
T ss_dssp             EECC-
T ss_pred             eccCC
Confidence            88765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.89  E-value=7.7e-09  Score=85.74  Aligned_cols=72  Identities=13%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+++.+++.|+++...+.+...+   +++++++||+|+|..+++|+ .++..+++++.|+|||||++++..
T Consensus        41 ~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           41 KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM-DDKQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc-cCHHHHHHHHHHhcCCCCEEEEEE
Confidence            6778899999999999985566776666   88999999999999999655 577799999999999999999986

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.88  E-value=1.5e-09  Score=95.95  Aligned_cols=75  Identities=12%  Similarity=0.041  Sum_probs=66.4

Q ss_pred             eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++.  ..+.+.+++...+|+++++||+|+|..+++|+ .++..+|+++.|+|||||+|+++.
T Consensus        69 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A           69 KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEe
Confidence            5678899999999999874  35777888999999999999999999999554 678899999999999999999986

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.88  E-value=1.9e-09  Score=94.17  Aligned_cols=75  Identities=24%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++.  ..+.+.+++...+|+++++||+|+|..+++|+ .++..+++++.|+|||||+++++.
T Consensus        77 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A           77 KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT-EEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc-cCHHHHHHHHHHHhCCCeEEEEEE
Confidence            5677899999999999873  45777888999999999999999999999655 677799999999999999999987

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.88  E-value=1.5e-09  Score=98.35  Aligned_cols=76  Identities=24%  Similarity=0.289  Sum_probs=66.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    ++  .+.+.+++...+||++++||+|+|..+++|+. ++..+|+|+.|+|||||+|++
T Consensus       107 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~  185 (297)
T 2o57_A          107 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAI  185 (297)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcC-CHHHHHHHHHHHcCCCeEEEE
Confidence            677889999999999875    43  46777889999999999999999999996664 577999999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       186 ~~~  188 (297)
T 2o57_A          186 TDP  188 (297)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.88  E-value=1.7e-09  Score=95.42  Aligned_cols=78  Identities=14%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             eeeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEE
Q 041513            8 MSFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      ..+.+.|+|+.|++.|+++.   ..+.+.+.|...+|+++++||+|+|..+++|+. .++..+++++.|+|||||++++.
T Consensus        79 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~  158 (266)
T 3ujc_A           79 AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT  158 (266)
T ss_dssp             CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEE
Confidence            36778899999999999875   356777889999999999999999999996652 56668999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       159 ~~  160 (266)
T 3ujc_A          159 DY  160 (266)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.86  E-value=1.8e-09  Score=98.04  Aligned_cols=74  Identities=18%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             eeccCCCcHHHHHHHHHc----C--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+|++||+.|+++    +  .++.+.++|...+|++  .||+|+|.++++| ..++  ..+|+|++|+|||||+|
T Consensus        98 ~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~-~~~~~~~~~l~~i~~~LkpGG~l  174 (261)
T 4gek_A           98 KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQF-LEPSERQALLDKIYQGLNPGGAL  174 (261)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCGGG-SCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeeeee-cCchhHhHHHHHHHHHcCCCcEE
Confidence            577889999999999885    2  2567888899888885  4999999999954 4333  35899999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++.+
T Consensus       175 ii~e~  179 (261)
T 4gek_A          175 VLSEK  179 (261)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.86  E-value=3e-09  Score=93.84  Aligned_cols=75  Identities=16%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    +++  +.+.+.|...+|+++++||+|+|..+++|+  ++..+++++.|+|||||++++
T Consensus        71 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~  148 (257)
T 3f4k_A           71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAV  148 (257)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEE
Confidence            567889999999999875    443  777888999999999999999999999665  677899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       149 ~~~  151 (257)
T 3f4k_A          149 SEA  151 (257)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.85  E-value=2.2e-09  Score=94.61  Aligned_cols=76  Identities=22%  Similarity=0.338  Sum_probs=65.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+.+.+.+.+|+++++||+|+|..+++|+ .++..++.++.|+|||||++++.
T Consensus        45 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           45 ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhc-cCHHHHHHHHHHHcCCCcEEEEE
Confidence            566789999999999875    44 4677788899999999999999999999665 57779999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       124 ~~  125 (239)
T 1xxl_A          124 DH  125 (239)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.85  E-value=3.2e-09  Score=94.67  Aligned_cols=77  Identities=29%  Similarity=0.415  Sum_probs=66.3

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+.+.|+|+.|++.|+++    ++  .+.+..++...+|+++++||+|++..+++|+ .++..+|+++.|+|||||+++
T Consensus        85 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~  163 (273)
T 3bus_A           85 VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVA  163 (273)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEE
Confidence            4677889999999999875    44  3677788899999999999999999999554 567799999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      ++.+
T Consensus       164 i~~~  167 (273)
T 3bus_A          164 IADF  167 (273)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.84  E-value=2e-09  Score=96.12  Aligned_cols=76  Identities=22%  Similarity=0.351  Sum_probs=67.0

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++.... +.+.+...+|+++++||+|+|..++.|+..++..+|+|+.|+|||||+++++.+
T Consensus        78 ~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A           78 EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            5677899999999999886533 667888999999999999999988878877788999999999999999999875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.84  E-value=1.1e-08  Score=89.40  Aligned_cols=108  Identities=15%  Similarity=0.140  Sum_probs=77.4

Q ss_pred             eeccCCCcHHHHHHHHHcCC------CcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALERGL------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++..      .+.+.++|...++ ++++||+|+|..+++|+.. +...+++++.|+|||||+|+
T Consensus        90 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  168 (235)
T 3lcc_A           90 FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELI  168 (235)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEE
Confidence            56788999999999988632      2677778888877 5669999999999966532 55689999999999999999


Q ss_pred             EEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513           82 VSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE  124 (294)
Q Consensus        82 is~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~  124 (294)
                      +...+..-......|..+.       ..+.++++..+|+.+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          169 TLMYPITDHVGGPPYKVDV-------STFEEVLVPIGFKAVSV  204 (235)
T ss_dssp             EEECCCSCCCSCSSCCCCH-------HHHHHHHGGGTEEEEEE
T ss_pred             EEEecccccCCCCCccCCH-------HHHHHHHHHcCCeEEEE
Confidence            9775332111111222232       34666777778877653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.84  E-value=2.5e-09  Score=91.38  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    +..+.+.+++...+|+++++||+|+|..+++|+. .+...+++++.|+|||||+++++
T Consensus        48 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  127 (209)
T 2p8j_A           48 KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN  127 (209)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            567789999999999875    4456677788889999999999999999996663 45668999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       128 ~~  129 (209)
T 2p8j_A          128 FL  129 (209)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.83  E-value=2.7e-09  Score=94.11  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    ++  .+.+.+++...+++ +++||+|+|..+++|+ .++..+|+|+.|+|||||++++
T Consensus        61 ~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~-~~~~~~l~~~~r~LkpgG~l~~  138 (256)
T 1nkv_A           61 TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLI  138 (256)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCChHhc-CCHHHHHHHHHHHcCCCeEEEE
Confidence            567789999999999875    44  37778889999998 8999999999999554 4667999999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       139 ~~~  141 (256)
T 1nkv_A          139 GEP  141 (256)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.81  E-value=5.1e-09  Score=93.48  Aligned_cols=75  Identities=21%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    +++  +.+.+.|...+|+++++||+|+|..+++|+  ++..+++++.|+|||||++++
T Consensus        71 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~  148 (267)
T 3kkz_A           71 QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAV  148 (267)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEE
Confidence            567789999999999875    442  778888999999999999999999999666  677999999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       149 ~~~  151 (267)
T 3kkz_A          149 SEC  151 (267)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.81  E-value=3.9e-09  Score=96.06  Aligned_cols=75  Identities=12%  Similarity=0.063  Sum_probs=65.0

Q ss_pred             eeeccCCCcHHHHHHHHHc-------CCCcEEEEccCCCCCCCC------CcccEEEecCcCcccccChHHHHHHHHhcc
Q 041513            8 MSFAPLDVHEAQVQFALER-------GLPAMVGLLSTYQLPYPS------RSFDVAHCSRCLVPWTSYDGLYLMEIDRVL   74 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er-------gv~~~~~v~d~~~LPfpd------~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVL   74 (294)
                      ..+.+.|+|+.|++.|+++       ...+.+.+++.+.+++++      ++||+|+|..+++|+  ++..+++++.|+|
T Consensus        62 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~L  139 (299)
T 3g5t_A           62 EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANL  139 (299)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhc
Confidence            3567789999999999886       346778889999999988      899999999999555  8889999999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||+|++..
T Consensus       140 kpgG~l~i~~  149 (299)
T 3g5t_A          140 RKDGTIAIWG  149 (299)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEe
Confidence            9999999843

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.80  E-value=2.9e-09  Score=93.59  Aligned_cols=77  Identities=14%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++..   .+.+.+.+...+++++++||+|+|..+++|+. .+...+|+++.|+|||||+|+++.
T Consensus       118 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          118 TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            46678999999999998752   46677788888999999999999999997664 345689999999999999999987


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      +
T Consensus       198 ~  198 (254)
T 1xtp_A          198 N  198 (254)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.80  E-value=4.8e-09  Score=99.69  Aligned_cols=75  Identities=23%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             eeccCCCcHHHHHHHHHc---------C----CCcEEEEccCCCC------CCCCCcccEEEecCcCcccccChHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER---------G----LPAMVGLLSTYQL------PYPSRSFDVAHCSRCLVPWTSYDGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er---------g----v~~~~~v~d~~~L------Pfpd~sFD~V~~s~~l~h~~~d~~~~L~E   69 (294)
                      .+.+.|+|+.|++.|+++         |    ..+.+.+.+...+      |+++++||+|++..++ |+..++..+|+|
T Consensus       110 ~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l-~~~~d~~~~l~~  188 (383)
T 4fsd_A          110 KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVC-NLSTNKLALFKE  188 (383)
T ss_dssp             EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCG-GGCSCHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccch-hcCCCHHHHHHH
Confidence            567889999999999986         4    3677888888887      9999999999999999 455678899999


Q ss_pred             HHhccCCCcEEEEEc
Q 041513           70 IDRVLRPGGYWVVSG   84 (294)
Q Consensus        70 i~RVLKPGG~~vis~   84 (294)
                      +.|+|||||+|+++.
T Consensus       189 ~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          189 IHRVLRDGGELYFSD  203 (383)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHHcCCCCEEEEEE
Confidence            999999999999986

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.78  E-value=5.5e-09  Score=91.05  Aligned_cols=76  Identities=25%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             eeccCCCcHHHHHHHHHcCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++..  .+.+.+.+...+++++++||+|+|..+++|+ .++..+|+++.|+|||||+++++.+
T Consensus        68 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A           68 YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV-EDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc-chHHHHHHHHHHhcCcCcEEEEEeC
Confidence            56778999999999998753  4667778888899999999999999999554 5777999999999999999999873

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.78  E-value=3.5e-09  Score=93.13  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCC--CCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++   +.+...+...+  |+++++||+|+|..+++|+.+ +...+++++.|+|||||++++..+
T Consensus        65 ~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A           65 ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            467789999999999987   56666776654  899999999999999966643 226899999999999999999875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.77  E-value=3.2e-08  Score=90.51  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             eeeccCCCcHHHHHHHHHcC----CC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHH---HHHHHHhccCCCc
Q 041513            8 MSFAPLDVHEAQVQFALERG----LP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGL---YLMEIDRVLRPGG   78 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg----v~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~---~L~Ei~RVLKPGG   78 (294)
                      ..+.+.|+|+.|++.|+++.    +.  +.+.++|...+|++ ++||+|+|..+++|+. ++..   +++++.|+|||||
T Consensus       144 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG  221 (305)
T 3ocj_A          144 VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEP-DDARVTELYRRFWQALKPGG  221 (305)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCC-CHHHHHHHHHHHHHHEEEEE
T ss_pred             CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhhhcC-CHHHHHHHHHHHHHhcCCCe
Confidence            35677899999999998763    32  67788899999998 9999999999996654 4433   7999999999999


Q ss_pred             EEEEEc
Q 041513           79 YWVVSG   84 (294)
Q Consensus        79 ~~vis~   84 (294)
                      +|+++.
T Consensus       222 ~l~i~~  227 (305)
T 3ocj_A          222 ALVTSF  227 (305)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999987

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.77  E-value=7.4e-09  Score=93.53  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=62.0

Q ss_pred             eeccCCCcHHHHHHHHHcC----------------------CCcEEEEccCCCCCCCC-CcccEEEecCcCcccccC-hH
Q 041513            9 SFAPLDVHEAQVQFALERG----------------------LPAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSY-DG   64 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------------------v~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d-~~   64 (294)
                      .+.+.|+|+.||+.|+++.                      ..+.+.++|...+++++ ++||+|++..+++|.... ..
T Consensus        92 ~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~  171 (252)
T 2gb4_A           92 TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHD  171 (252)
T ss_dssp             EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHH
T ss_pred             eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHH
Confidence            6788999999999997642                      35678889999999875 899999999999666433 34


Q ss_pred             HHHHHHHhccCCCcEEEEE
Q 041513           65 LYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+++++.|+|||||+|++.
T Consensus       172 ~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          172 RYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             HHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEE
Confidence            6999999999999999754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=4.8e-09  Score=93.80  Aligned_cols=74  Identities=16%  Similarity=0.034  Sum_probs=65.0

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++. .+.+.+.+.+.+|+++++||+|+|..+++|+ .++..+++|+.|+|| ||++++..+
T Consensus        58 ~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           58 FVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             EEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence            5678899999999998766 7788888999999999999999999999665 678899999999999 998888763

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.75  E-value=7.2e-09  Score=88.69  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             eeccCCCcHHHHHHHHHcCC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|++.+. .+.+...|...+ +++++||+|+|..+++|+.+. ...+|+++.|+|||||+++++.+
T Consensus        70 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A           70 RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            56778999999999999774 567777888888 889999999999999665432 25899999999999999999863

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.75  E-value=4.2e-09  Score=97.57  Aligned_cols=77  Identities=8%  Similarity=-0.031  Sum_probs=58.8

Q ss_pred             eeccCCCcHHHHHHHHHcC----CC-------cEEEEccC------CCC--CCCCCcccEEEecCcCcccc--cChHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG----LP-------AMVGLLST------YQL--PYPSRSFDVAHCSRCLVPWT--SYDGLYL   67 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v~-------~~~~v~d~------~~L--Pfpd~sFD~V~~s~~l~h~~--~d~~~~L   67 (294)
                      .+.+.|+|+.||+.|+++.    ..       +.+.+.+.      +.|  ++++++||+|+|.+++++..  .+...+|
T Consensus        73 ~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l  152 (302)
T 2vdw_A           73 LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVM  152 (302)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHH
Confidence            5778899999999998862    21       34555554      333  47789999999999994321  3446899


Q ss_pred             HHHHhccCCCcEEEEEcC
Q 041513           68 MEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        68 ~Ei~RVLKPGG~~vis~p   85 (294)
                      +++.|+|||||+|+++.+
T Consensus       153 ~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          153 NNLSELTASGGKVLITTM  170 (302)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEEeC
Confidence            999999999999999886

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.73  E-value=5.8e-09  Score=94.02  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=65.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++    ++  .+.+.+++...++ +++++||+|+|..+++| ..++..+++++.|+|||||+++
T Consensus        92 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~  170 (285)
T 4htf_A           92 QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW-VADPRSVLQTLWSVLRPGGVLS  170 (285)
T ss_dssp             EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc-ccCHHHHHHHHHHHcCCCeEEE
Confidence            567889999999999875    33  3667778888887 88999999999999955 4677799999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       171 ~~~~  174 (285)
T 4htf_A          171 LMFY  174 (285)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.73  E-value=1.1e-08  Score=88.89  Aligned_cols=72  Identities=25%  Similarity=0.259  Sum_probs=63.2

Q ss_pred             ccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           11 APLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        11 ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.|+|+.|++.|+++  .+.+...+...+|+++++||+|+|..+++| ..++..+|+++.|+|||||+++++.+
T Consensus        69 ~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A           69 IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICF-VDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGG-SSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhh-ccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            5679999999999998  456677888889999999999999999955 46777999999999999999999874

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.73  E-value=1.2e-08  Score=93.72  Aligned_cols=76  Identities=14%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+.+.|+|+.|++.|+++    ++  .+.+.++|...+|+++++||+|+|..+++|+  +...+|+++.|+|||||+++
T Consensus       141 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~  218 (312)
T 3vc1_A          141 SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYV  218 (312)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEE
Confidence            3567789999999999875    44  3778888999999999999999999999665  47799999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       219 ~~~~  222 (312)
T 3vc1_A          219 TITG  222 (312)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9873

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.73  E-value=2.5e-08  Score=86.19  Aligned_cols=75  Identities=15%  Similarity=0.063  Sum_probs=62.1

Q ss_pred             eeccCCCcHHHHHHHHHcC----C------CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALERG----L------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKP   76 (294)
                      .+.+.|+|+.|++.|+++-    +      .+.+.+++...+++++++||+|+|..+++|+ .++  ..+++++.|+|||
T Consensus        55 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~Lkp  133 (217)
T 3jwh_A           55 QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQP  133 (217)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCC
Confidence            5677899999999998862    2      4677778888888888999999999999666 444  5899999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||.++++.
T Consensus       134 gG~li~~~  141 (217)
T 3jwh_A          134 KIVIVTTP  141 (217)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEcc
Confidence            99777754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.72  E-value=1.1e-08  Score=89.11  Aligned_cols=76  Identities=11%  Similarity=0.127  Sum_probs=63.9

Q ss_pred             eeeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccccChH--HHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG--LYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~--~~L~Ei~RVLKPGG~~vi   82 (294)
                      ..+.+.|+|+.|++.|+++..   .+.+.+.|...++++ ++||+|+|..+++|+ .++.  .+++++.|+|||||++++
T Consensus        69 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~  146 (234)
T 3dtn_A           69 ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFIN  146 (234)
T ss_dssp             CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence            356788999999999998732   567778899999988 999999999999665 4443  499999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       147 ~~~  149 (234)
T 3dtn_A          147 ADL  149 (234)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            873

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.72  E-value=1.4e-08  Score=87.29  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=63.2

Q ss_pred             eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh---HHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD---GLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~---~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++..   .+.+.+.+...++ ++++||+|+|..+++|+ .++   ..++.++.|+|||||+|++
T Consensus        75 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~  152 (216)
T 3ofk_A           75 RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYL-EDMTQMRTAIDNMVKMLAPGGHLVF  152 (216)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGS-SSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhC-CCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            67788999999999998742   4677788888888 78999999999999555 444   4679999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       153 ~~~  155 (216)
T 3ofk_A          153 GSA  155 (216)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            874

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.72  E-value=6.1e-08  Score=80.88  Aligned_cols=77  Identities=14%  Similarity=0.020  Sum_probs=64.1

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEec-CcCcccc-cChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCS-RCLVPWT-SYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s-~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.+++.|+++...+.+...+...+++++++||+|++. .+++|.. ++...++.++.|+|||||++++..+
T Consensus        70 ~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~  148 (195)
T 3cgg_A           70 DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG  148 (195)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            567789999999999998666778888888889999999999998 5664432 2335799999999999999999875

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.71  E-value=1.3e-08  Score=90.95  Aligned_cols=76  Identities=22%  Similarity=0.323  Sum_probs=65.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+...|...+|+++++||+|++..+++| ..++..+++++.|+|||||++++.
T Consensus        63 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~  141 (276)
T 3mgg_A           63 EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH-LQSPEEALKSLKKVLKPGGTITVI  141 (276)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhh-cCCHHHHHHHHHHHcCCCcEEEEE
Confidence            567789999999999875    44 467777889999999999999999999955 567779999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       142 ~~  143 (276)
T 3mgg_A          142 EG  143 (276)
T ss_dssp             EE
T ss_pred             Ec
Confidence            74

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.71  E-value=1.7e-08  Score=87.12  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=64.3

Q ss_pred             eeccCCCcHHHHHHHHHcC----C------CcEEEEccCCCCCCCCCcccEEEecCcCcccccChH---HHHHHHHhccC
Q 041513            9 SFAPLDVHEAQVQFALERG----L------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG---LYLMEIDRVLR   75 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~---~~L~Ei~RVLK   75 (294)
                      .+.+.|+|+.|++.|+++.    +      .+.+.+.+...+++++++||+|+|..+++|+ .++.   .+++++.|+||
T Consensus        54 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~  132 (235)
T 3sm3_A           54 SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV-PDPKERSRIIKEVFRVLK  132 (235)
T ss_dssp             EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGC-CCHHHHHHHHHHHHHHEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcC-CCHHHHHHHHHHHHHHcC
Confidence            5678899999999999853    2      2466778899999999999999999999554 5555   79999999999


Q ss_pred             CCcEEEEEcC
Q 041513           76 PGGYWVVSGP   85 (294)
Q Consensus        76 PGG~~vis~p   85 (294)
                      |||+++++.+
T Consensus       133 pgG~l~~~~~  142 (235)
T 3sm3_A          133 PGAYLYLVEF  142 (235)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCeEEEEEEC
Confidence            9999999874

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.71  E-value=1.2e-08  Score=90.77  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++...+.+.++|...+++ +++||+|+|.. +++|+.  .+...+|+++.|+|||||+|++..
T Consensus        74 ~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A           74 TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            4677899999999999986677888889999988 78999999998 886653  345579999999999999999974

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.70  E-value=7.2e-09  Score=93.87  Aligned_cols=76  Identities=22%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             eeccCCCcHHHHHHHHHcCCC-----------------------------------cEEEEccCCC-CCC-----CCCcc
Q 041513            9 SFAPLDVHEAQVQFALERGLP-----------------------------------AMVGLLSTYQ-LPY-----PSRSF   47 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~-----------------------------------~~~~v~d~~~-LPf-----pd~sF   47 (294)
                      .+.+.|+|+.|++.|+++.-.                                   ..+..+|... +||     ++++|
T Consensus        96 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~f  175 (289)
T 2g72_A           96 DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPA  175 (289)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSE
T ss_pred             eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCC
Confidence            577889999999999873100                                   2344457666 664     45679


Q ss_pred             cEEEecCcCccc---ccChHHHHHHHHhccCCCcEEEEEc
Q 041513           48 DVAHCSRCLVPW---TSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        48 D~V~~s~~l~h~---~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      |+|+|+.+++|.   .++...+|+|+.|+|||||+|+++.
T Consensus       176 D~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          176 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999999553   3356789999999999999999975

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.69  E-value=1e-08  Score=90.19  Aligned_cols=76  Identities=17%  Similarity=0.069  Sum_probs=63.6

Q ss_pred             eeccCCCcHHHHHHHHHcCC-----CcEEEEccCCCCCCCCCcccEEEecCcCcccccChH--HHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALERGL-----PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG--LYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-----~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~--~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++..     .+.+...+...+++++++||+|+|..+++|+. ++.  .+++++.|+|||||+|+
T Consensus       104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~  182 (241)
T 2ex4_A          104 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLT-DQHLAEFLRRCKGSLRPNGIIV  182 (241)
T ss_dssp             EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEE
Confidence            56778999999999998642     25667788889999999999999999996654 433  79999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      ++.+
T Consensus       183 i~~~  186 (241)
T 2ex4_A          183 IKDN  186 (241)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.66  E-value=2.2e-08  Score=90.63  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      ..+.+.|+|+.|++.|+++    +..+.+.+.|...+|++ ++||+|+|..+++| ..++..+++++.|+|||||++++.
T Consensus        48 ~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~  125 (284)
T 3gu3_A           48 SKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLH-MTTPETMLQKMIHSVKKGGKIICF  125 (284)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGGG-CSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhhc-CCCHHHHHHHHHHHcCCCCEEEEE
Confidence            3567789999999999875    23567778888899985 69999999999954 567779999999999999999998


Q ss_pred             cCC
Q 041513           84 GPP   86 (294)
Q Consensus        84 ~pp   86 (294)
                      .+.
T Consensus       126 ~~~  128 (284)
T 3gu3_A          126 EPH  128 (284)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            864

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.66  E-value=8.5e-09  Score=92.96  Aligned_cols=77  Identities=21%  Similarity=0.327  Sum_probs=63.4

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCCCC---CCCCcccEEEec-CcCccccc------ChHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQLP---YPSRSFDVAHCS-RCLVPWTS------YDGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~LP---fpd~sFD~V~~s-~~l~h~~~------d~~~~L~E   69 (294)
                      .+.+.|+|+.|++.|+++.         ..+.+..++...+|   +++++||+|+|. .+++|+.+      +...++++
T Consensus        81 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~  160 (293)
T 3thr_A           81 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN  160 (293)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHH
Confidence            6778899999999998742         24556677888888   899999999998 88866543      16689999


Q ss_pred             HHhccCCCcEEEEEcC
Q 041513           70 IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        70 i~RVLKPGG~~vis~p   85 (294)
                      +.|+|||||+|+++.+
T Consensus       161 ~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          161 IASMVRPGGLLVIDHR  176 (293)
T ss_dssp             HHHTEEEEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEeC
Confidence            9999999999999875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.66  E-value=9.3e-09  Score=88.36  Aligned_cols=76  Identities=22%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEEcCC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      .+.+.|+|+.|++.|+++. .+.+...+...++ ++++||+|+|..+++|+. ++...+|+++.|+|||||+|+++.++
T Consensus        67 ~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A           67 DVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            5677899999999999873 3344557788888 899999999999996654 24558999999999999999998743

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.65  E-value=3.9e-08  Score=83.68  Aligned_cols=75  Identities=13%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    +..+.+.+.+...+++++++||+|+|+.+  |+. .+...+++++.|+|||||+++++
T Consensus        53 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~  130 (202)
T 2kw5_A           53 EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFILE  130 (202)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            577789999999999876    45677777888889999999999999643  543 34567999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       131 ~~  132 (202)
T 2kw5_A          131 GF  132 (202)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.64  E-value=2.4e-08  Score=85.78  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             eeeccCCCcHHHHHHHHHcCCCcEEEEccCCC--CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQ--LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~--LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ..+.+.|+|+.|++.|+++..  .+...+...  +++++++||+|+|..+++|+ .++..++.++.|+|||||+++++.+
T Consensus        55 ~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           55 TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL-FDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGGS-SCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhhc-CCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            356778999999999988753  455667655  78889999999999999554 5677999999999999999999885


Q ss_pred             C
Q 041513           86 P   86 (294)
Q Consensus        86 p   86 (294)
                      .
T Consensus       132 ~  132 (230)
T 3cc8_A          132 N  132 (230)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.62  E-value=1.8e-08  Score=85.84  Aligned_cols=77  Identities=23%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCcccEEEecCcCcccc--------------cChHHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--------------SYDGLYLMEID   71 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--------------~d~~~~L~Ei~   71 (294)
                      .+...|+|+.|++.|+++.   ..+.+.+.+...+++++++||+|++..++.|..              .+...+++++.
T Consensus        67 ~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  146 (215)
T 2pxx_A           67 NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVS  146 (215)
T ss_dssp             CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHH
T ss_pred             cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHH
Confidence            5677899999999999874   246777888888999999999999988885443              23457999999


Q ss_pred             hccCCCcEEEEEcC
Q 041513           72 RVLRPGGYWVVSGP   85 (294)
Q Consensus        72 RVLKPGG~~vis~p   85 (294)
                      |+|||||++++..+
T Consensus       147 ~~LkpgG~li~~~~  160 (215)
T 2pxx_A          147 RVLVPGGRFISMTS  160 (215)
T ss_dssp             HHEEEEEEEEEEES
T ss_pred             HhCcCCCEEEEEeC
Confidence            99999999999885

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.62  E-value=1.7e-08  Score=86.50  Aligned_cols=74  Identities=24%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCC---CCCCC-cccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQL---PYPSR-SFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~L---Pfpd~-sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|++++ ...+...+...+   +++.+ +||+|+|..++ | ..++..+++++.|+|||||+|+++.
T Consensus        76 ~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l-~-~~~~~~~l~~~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A           76 EAVGVDGDRTLVDAARAAG-AGEVHLASYAQLAEAKVPVGKDYDLICANFAL-L-HQDIIELLSAMRTLLVPGGALVIQT  152 (227)
T ss_dssp             EEEEEESCHHHHHHHHHTC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESCC-C-SSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEcCCHHHHHHHHHhc-ccccchhhHHhhcccccccCCCccEEEECchh-h-hhhHHHHHHHHHHHhCCCeEEEEEe
Confidence            5678899999999999983 344555554444   65555 49999999999 5 6677799999999999999999987


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      +
T Consensus       153 ~  153 (227)
T 3e8s_A          153 L  153 (227)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.62  E-value=2.6e-08  Score=86.51  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++    +..+.+.+.+...++++ ++||+|+|.. +++|+.  .+...+|+++.|+|||||+++
T Consensus        61 ~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  139 (246)
T 1y8c_A           61 NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            567789999999999875    33677777888888887 8999999998 996653  455689999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       140 ~~~~  143 (246)
T 1y8c_A          140 FDIN  143 (246)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.61  E-value=8.6e-09  Score=92.62  Aligned_cols=76  Identities=13%  Similarity=-0.012  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHHcC------CC----------------------------c-EEEEccCCC-CCCC---CCcccE
Q 041513            9 SFAPLDVHEAQVQFALERG------LP----------------------------A-MVGLLSTYQ-LPYP---SRSFDV   49 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------v~----------------------------~-~~~v~d~~~-LPfp---d~sFD~   49 (294)
                      ++.+.|+|+.||+.|+++.      +.                            + .+.++|... .|++   +++||+
T Consensus        80 ~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~  159 (263)
T 2a14_A           80 DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADC  159 (263)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEE
T ss_pred             ceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCE
Confidence            5788899999999998631      11                            1 155677555 4553   679999


Q ss_pred             EEecCcCccccc---ChHHHHHHHHhccCCCcEEEEEc
Q 041513           50 AHCSRCLVPWTS---YDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        50 V~~s~~l~h~~~---d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      |+|+++++|...   +...+++++.|+|||||+|+++.
T Consensus       160 V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          160 VLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             EEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999966433   34579999999999999999996

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.61  E-value=3.6e-08  Score=85.60  Aligned_cols=76  Identities=20%  Similarity=0.119  Sum_probs=62.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+...+...+++ +++||+|+|+. +++|..  .+...+|+++.|+|||||+++++.+
T Consensus        64 ~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           64 DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            4667899999999999986567788888888888 78999999766 775543  3345799999999999999999863

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.61  E-value=4.6e-08  Score=82.43  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+...+...+++ +++||+|++..+++|+.. +...+++++.|+|||||++++
T Consensus        56 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A           56 DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            567789999999999874    44 56777788888888 899999999999966542 556899999999999999888


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       135 ~~  136 (199)
T 2xvm_A          135 VA  136 (199)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.60  E-value=2.4e-08  Score=86.12  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccc-ccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW-TSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~-~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    +..+.+.+.|...+++++++||+|+|..+++++ ..+...+++++.|+|||||++++.
T Consensus        62 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  141 (227)
T 1ve3_A           62 EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  141 (227)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            567789999999999875    356778888988899999999999999984322 345568999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       142 ~~  143 (227)
T 1ve3_A          142 FT  143 (227)
T ss_dssp             EE
T ss_pred             ec
Confidence            75

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.60  E-value=7.6e-08  Score=86.59  Aligned_cols=74  Identities=12%  Similarity=0.062  Sum_probs=61.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++    ++  .+.+...+...+|   ++||+|+|..+++|+. .+...+++++.|+|||||+++
T Consensus        89 ~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  165 (287)
T 1kpg_A           89 NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVML  165 (287)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEE
Confidence            567789999999999886    33  4666777877665   8999999999997765 466789999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       166 ~~~~  169 (287)
T 1kpg_A          166 LHTI  169 (287)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.59  E-value=2e-08  Score=90.14  Aligned_cols=77  Identities=22%  Similarity=0.319  Sum_probs=63.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCC-CCCcccEEEecCcCccc---ccChHHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPY-PSRSFDVAHCSRCLVPW---TSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~---~~d~~~~L~Ei~RVLKPGG   78 (294)
                      .+.+.|+|+.|++.|+++    +.  .+.+.+++...+|+ ++++||+|+|..+++|.   ..+...+|+++.|+|||||
T Consensus        89 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG  168 (298)
T 1ri5_A           89 EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG  168 (298)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCC
Confidence            567789999999999876    22  35677788888898 68999999999999542   3445679999999999999


Q ss_pred             EEEEEcC
Q 041513           79 YWVVSGP   85 (294)
Q Consensus        79 ~~vis~p   85 (294)
                      +++++.+
T Consensus       169 ~l~~~~~  175 (298)
T 1ri5_A          169 YFIMTVP  175 (298)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9999885

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.56  E-value=6.3e-09  Score=99.26  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEE---EEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMV---GLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~---~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|++++++...   ...+.+.+|+++++||+|+|..+++|+ .++..+|+++.|+|||||+|++..+
T Consensus       131 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          131 RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI-PYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhc-CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            567889999999999999765432   123466788999999999999999665 5788999999999999999999865

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.54  E-value=2.9e-08  Score=91.02  Aligned_cols=76  Identities=18%  Similarity=0.332  Sum_probs=61.4

Q ss_pred             eeccCCCcHHHHHHHHHcC------------CCcEEEEccCCCCC----CC--CCcccEEEecCcCcccc-cC---hHHH
Q 041513            9 SFAPLDVHEAQVQFALERG------------LPAMVGLLSTYQLP----YP--SRSFDVAHCSRCLVPWT-SY---DGLY   66 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------------v~~~~~v~d~~~LP----fp--d~sFD~V~~s~~l~h~~-~d---~~~~   66 (294)
                      .+.+.|+|+.|++.|+++.            ..+.+.++|...++    |+  +++||+|+|..++ ||. .+   ...+
T Consensus        59 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l-~~~~~~~~~~~~~  137 (313)
T 3bgv_A           59 KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVC-HYSFESYEQADMM  137 (313)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCG-GGGGGSHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCEEEEEEecch-hhccCCHHHHHHH
Confidence            5667899999999998752            14567778888776    64  4599999999999 665 33   3579


Q ss_pred             HHHHHhccCCCcEEEEEcC
Q 041513           67 LMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        67 L~Ei~RVLKPGG~~vis~p   85 (294)
                      |+++.|+|||||+|+++.+
T Consensus       138 l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          138 LRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             HHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEecC
Confidence            9999999999999999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.54  E-value=2.4e-08  Score=87.73  Aligned_cols=75  Identities=13%  Similarity=0.047  Sum_probs=59.4

Q ss_pred             eeccCCCcHHHHHHHHHcC----CCcEEEEccCCCC--CCCCCcccEEEe-cCcCccccc----ChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERG----LPAMVGLLSTYQL--PYPSRSFDVAHC-SRCLVPWTS----YDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~~L--Pfpd~sFD~V~~-s~~l~h~~~----d~~~~L~Ei~RVLKPG   77 (294)
                      .+.+.|+|+.|++.|+++.    ..+.+.+++.+.+  ||++++||+|++ .+++ +...    +...+++|+.|+||||
T Consensus        85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~Lkpg  163 (236)
T 1zx0_A           85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCC
Confidence            5678899999999998863    3466777888777  999999999999 6664 3221    1235799999999999


Q ss_pred             cEEEEEc
Q 041513           78 GYWVVSG   84 (294)
Q Consensus        78 G~~vis~   84 (294)
                      |+|++..
T Consensus       164 G~l~~~~  170 (236)
T 1zx0_A          164 GVLTYCN  170 (236)
T ss_dssp             EEEEECC
T ss_pred             eEEEEEe
Confidence            9999865

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.52  E-value=5e-08  Score=86.03  Aligned_cols=76  Identities=18%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             eeccCCCcHHHHHHHHHcC--CC--------------------------------c-EEEEccCCCC-CCCC---CcccE
Q 041513            9 SFAPLDVHEAQVQFALERG--LP--------------------------------A-MVGLLSTYQL-PYPS---RSFDV   49 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~--------------------------------~-~~~v~d~~~L-Pfpd---~sFD~   49 (294)
                      .+.+.|+|+.|++.|+++.  .+                                + .+.+++...+ ++++   ++||+
T Consensus        81 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~  160 (265)
T 2i62_A           81 EIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADC  160 (265)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEE
T ss_pred             eEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccE
Confidence            6778899999999998752  11                                4 6677786665 4466   89999


Q ss_pred             EEecCcCcccc---cChHHHHHHHHhccCCCcEEEEEc
Q 041513           50 AHCSRCLVPWT---SYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        50 V~~s~~l~h~~---~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      |+|..+++|..   .+...+++++.|+|||||+|+++.
T Consensus       161 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          161 LLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             EEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            99999995333   345689999999999999999987

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.50  E-value=6.4e-08  Score=86.26  Aligned_cols=69  Identities=25%  Similarity=0.353  Sum_probs=60.7

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|++++..+.+.+.+...+|+++++||+|++..+.        ..++|+.|+|||||++++..+
T Consensus       111 ~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~--------~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          111 TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC--------CCHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh--------hhHHHHHHhcCCCcEEEEEEc
Confidence            567789999999999998877788888999999999999999987653        368999999999999999875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.48  E-value=1.9e-07  Score=85.46  Aligned_cols=74  Identities=9%  Similarity=0.021  Sum_probs=61.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++    ++  .+.+...+...+|   ++||+|+|..+++|+. .+...+++++.|+|||||+++
T Consensus       115 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  191 (318)
T 2fk8_A          115 NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT  191 (318)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence            677889999999999876    33  3667777877765   7899999999997764 466789999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       192 ~~~~  195 (318)
T 2fk8_A          192 VQSS  195 (318)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.47  E-value=1.3e-07  Score=86.81  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             eeeccCCCcHHHHHHHHHcC------------------------------------CCcEEEEccCCCCCCC-CCcccEE
Q 041513            8 MSFAPLDVHEAQVQFALERG------------------------------------LPAMVGLLSTYQLPYP-SRSFDVA   50 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg------------------------------------v~~~~~v~d~~~LPfp-d~sFD~V   50 (294)
                      ..|.+.|+|+.||+.|++..                                    -.+.|.+.+....||+ .+.||+|
T Consensus       138 ~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI  217 (274)
T 1af7_A          138 WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAI  217 (274)
T ss_dssp             EEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEE
T ss_pred             eEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEE
Confidence            47889999999999998741                                    0255666776666776 6889999


Q ss_pred             EecCcCcccccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513           51 HCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        51 ~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +|..+++|+.+.. ..++.+++++|||||+|++..
T Consensus       218 ~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          218 FCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             EECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            9999996664321 579999999999999999854

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.47  E-value=1e-07  Score=82.91  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=62.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.|+++    +..+.+.+.+...++++ ++||+|+|.. +++|+.  .+...+++++.|+|||||+++
T Consensus        56 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  134 (243)
T 3d2l_A           56 EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL  134 (243)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence            567789999999999875    34677778888888887 8899999987 886553  344579999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       135 ~~~~  138 (243)
T 3d2l_A          135 FDVH  138 (243)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9775

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.47  E-value=6.6e-08  Score=87.88  Aligned_cols=76  Identities=12%  Similarity=0.071  Sum_probs=62.2

Q ss_pred             eeccCCCcHHHHHHHHHcC--------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccC--hHHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALERG--------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--DGLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--~~~~L~Ei~RVLKPGG   78 (294)
                      .+.+.|+|+.|++.|+++.        ..+.+.++|...+|+ +++||+|+|+..+.|+.+.  ...+|+++.|+|||||
T Consensus       106 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  184 (299)
T 3g2m_A          106 EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGG  184 (299)
T ss_dssp             CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCc
Confidence            5677899999999998762        346788889999998 7899999987555466543  3579999999999999


Q ss_pred             EEEEEcC
Q 041513           79 YWVVSGP   85 (294)
Q Consensus        79 ~~vis~p   85 (294)
                      +|++..+
T Consensus       185 ~l~~~~~  191 (299)
T 3g2m_A          185 KFLLSLA  191 (299)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEee
Confidence            9999874

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.47  E-value=1.6e-07  Score=84.48  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++.+.+.+.|...+++ +++||+|+|..+++|+.. +...+++++.|+|||||++++.
T Consensus       144 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          144 DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            577889999999999875    4577888888888888 899999999999965532 2347999999999999998876


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       223 ~  223 (286)
T 3m70_A          223 A  223 (286)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.46  E-value=2.6e-07  Score=84.06  Aligned_cols=75  Identities=8%  Similarity=0.024  Sum_probs=60.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC--------hHHHHHHHHhc
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRV   73 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RV   73 (294)
                      ..+.+.|+|++|++.|+++    ++  .+.+..+|...+   +++||+|+|..+++|+.+.        ...+++++.|+
T Consensus        96 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~  172 (302)
T 3hem_A           96 VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL  172 (302)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHS
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHh
Confidence            3577889999999999876    44  366777777665   7999999999999766432        15899999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||++++...
T Consensus       173 LkpgG~l~i~~~  184 (302)
T 3hem_A          173 TPDDGRMLLHTI  184 (302)
T ss_dssp             SCTTCEEEEEEE
T ss_pred             cCCCcEEEEEEE
Confidence            999999999763

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.46  E-value=6e-07  Score=74.73  Aligned_cols=76  Identities=16%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+++.+++.|+++    +++   +.+...+... ++++++||+|++...++|...+...+++++.|+|||||+++
T Consensus        76 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  154 (194)
T 1dus_A           76 STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW  154 (194)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEE
Confidence            566789999999999875    444   6676777655 45688999999998884324455689999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       155 ~~~~  158 (194)
T 1dus_A          155 VVIQ  158 (194)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.46  E-value=3.6e-08  Score=87.53  Aligned_cols=75  Identities=13%  Similarity=-0.008  Sum_probs=56.0

Q ss_pred             eeccCCCcHHHHHHHHHcC----CCcEEEEccCC--CCCCCCCcccEEEe-----cCcCcccccChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERG----LPAMVGLLSTY--QLPYPSRSFDVAHC-----SRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~--~LPfpd~sFD~V~~-----s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      ++..+|+|+.|++.|+++.    ....+...+++  ..++++++||.|++     ...++|. .+...+++|+.|+||||
T Consensus        85 ~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~-~~~~~~~~e~~rvLkPG  163 (236)
T 3orh_A           85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhh-cchhhhhhhhhheeCCC
Confidence            5667899999999999853    34455555544  34789999999974     3444333 35568999999999999


Q ss_pred             cEEEEEc
Q 041513           78 GYWVVSG   84 (294)
Q Consensus        78 G~~vis~   84 (294)
                      |.|++..
T Consensus       164 G~l~f~~  170 (236)
T 3orh_A          164 GVLTYCN  170 (236)
T ss_dssp             EEEEECC
T ss_pred             CEEEEEe
Confidence            9999864

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.46  E-value=7.6e-07  Score=76.47  Aligned_cols=89  Identities=25%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHH
Q 041513           30 AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQIS  109 (294)
Q Consensus        30 ~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~  109 (294)
                      +.+.+++...+|+++++||+|+|..++ |+ .++..+++++.|+|||||+++++......        .+       ...
T Consensus        99 ~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--------~~-------~~~  161 (215)
T 2zfu_A           99 PRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TNIRDFLEEANRVLKPGGLLKVAEVSSRF--------ED-------VRT  161 (215)
T ss_dssp             TTEEESCTTSCSCCTTCEEEEEEESCC-CS-SCHHHHHHHHHHHEEEEEEEEEEECGGGC--------SC-------HHH
T ss_pred             ceEEEeccccCCCCCCCEeEEEEehhc-cc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCC--------CC-------HHH
Confidence            345667888899999999999999999 54 67779999999999999999998753211        01       134


Q ss_pred             HHHHHHhhceEeeecccc-----eeEeeCCC
Q 041513          110 LENLATRLCWKKIAERGP-----IAVWRKPT  135 (294)
Q Consensus       110 le~l~~~lcW~~v~~~~~-----~~iw~Kp~  135 (294)
                      +..+++..+++.+.....     +.+++|..
T Consensus       162 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~  192 (215)
T 2zfu_A          162 FLRAVTKLGFKIVSKDLTNSHFFLFDFQKTG  192 (215)
T ss_dssp             HHHHHHHTTEEEEEEECCSTTCEEEEEEECS
T ss_pred             HHHHHHHCCCEEEEEecCCCeEEEEEEEecC
Confidence            556667777877654321     44556553

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=86.57  Aligned_cols=56  Identities=20%  Similarity=0.100  Sum_probs=42.7

Q ss_pred             cEEEEccCCCC-----CCCCCcccEEEecCcCcccc---c--ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           30 AMVGLLSTYQL-----PYPSRSFDVAHCSRCLVPWT---S--YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        30 ~~~~v~d~~~L-----Pfpd~sFD~V~~s~~l~h~~---~--d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+..+|....     ++++++||+|+|..+++|++   .  +...+|+++.|+|||||+|++...
T Consensus       156 v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          156 VVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             EEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            55666665443     36789999999999984432   1  445799999999999999999764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.43  E-value=2.6e-07  Score=84.18  Aligned_cols=77  Identities=9%  Similarity=-0.064  Sum_probs=59.7

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCC-----------CCCCCcccEEEecCcCcccccC-hHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQL-----------PYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~L-----------Pfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RV   73 (294)
                      .+...|+|+.||+.|+++.   -.+.+..+|....           .++..+||+|++..+++|+.++ ...+|+++.|+
T Consensus       106 ~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~  185 (274)
T 2qe6_A          106 RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDA  185 (274)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHH
T ss_pred             EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHh
Confidence            5677899999999999863   2466777776542           1333589999999999555432 66899999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||+|+++..
T Consensus       186 L~pGG~l~i~~~  197 (274)
T 2qe6_A          186 LAPGSYLFMTSL  197 (274)
T ss_dssp             SCTTCEEEEEEE
T ss_pred             CCCCcEEEEEEe
Confidence            999999999874

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.40  E-value=1.4e-07  Score=82.72  Aligned_cols=77  Identities=12%  Similarity=-0.021  Sum_probs=61.1

Q ss_pred             eeccCCCcHHHHHHHHHcCC--CcEEEEccCCCCCCCC-----CcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALERGL--PAMVGLLSTYQLPYPS-----RSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv--~~~~~v~d~~~LPfpd-----~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+|+.|++.|+++..  .+.+.++|...++++.     ..||+|++..+++|... +...+++++.|+|||||++
T Consensus        80 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  159 (245)
T 3ggd_A           80 RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM  159 (245)
T ss_dssp             CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46678999999999998742  5677778887766543     34999999999955432 4568999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      ++...
T Consensus       160 ~i~~~  164 (245)
T 3ggd_A          160 YLIEL  164 (245)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            88764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.38  E-value=1.9e-06  Score=74.47  Aligned_cols=76  Identities=16%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCCCcccEEEecCcCcccccC--------hHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RV   73 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+..+++..++  +++++||+|++.+.. +|...        ...++.++.|+
T Consensus        67 ~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  145 (214)
T 1yzh_A           67 NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD-PWPKKRHEKRRLTYKTFLDTFKRI  145 (214)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-CCCSGGGGGGSTTSHHHHHHHHHH
T ss_pred             CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC-CccccchhhhccCCHHHHHHHHHH
Confidence            567789999999999874    44 4667778888887  889999999998765 44321        14799999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||.|++...
T Consensus       146 LkpgG~l~~~~~  157 (214)
T 1yzh_A          146 LPENGEIHFKTD  157 (214)
T ss_dssp             SCTTCEEEEEES
T ss_pred             cCCCcEEEEEeC
Confidence            999999999764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.37  E-value=1.5e-07  Score=82.19  Aligned_cols=67  Identities=13%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccC-CCCCCC-CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLST-YQLPYP-SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~-~~LPfp-d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++...+.+.++|. +.+|++ +++||+|+|.       .++..+++++.|+|||||+++.
T Consensus        72 ~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------~~~~~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A           72 RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------RGPTSVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------SCCSGGGGGHHHHEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------CCHHHHHHHHHHHcCCCcEEEE
Confidence            56778999999999999866678888887 789999 9999999987       2445899999999999999993

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.34  E-value=5e-07  Score=75.83  Aligned_cols=78  Identities=18%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC-CCCCcccEEEecCcCccc--------ccChHHHHHHHHhc
Q 041513            8 MSFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPW--------TSYDGLYLMEIDRV   73 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~--------~~d~~~~L~Ei~RV   73 (294)
                      ..+.+.|+|++|++.|+++    ++ .+.+.+.+.+.++ +++++||+|++.....+.        ..+...+++++.|+
T Consensus        45 ~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  124 (185)
T 3mti_A           45 KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR  124 (185)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHh
Confidence            3567789999999999875    44 4566665566653 568899999987433232        12334689999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||+|++...
T Consensus       125 LkpgG~l~i~~~  136 (185)
T 3mti_A          125 LEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEe
Confidence            999999999863

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.34  E-value=2.3e-06  Score=74.53  Aligned_cols=76  Identities=11%  Similarity=0.201  Sum_probs=60.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCCCcccEEEecCcCcccccC--------hHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RV   73 (294)
                      .+.+.|+|+.|++.|+++    ++ ++.+..+|+..++  |++++||.|++.+.. +|...        ...+++++.|+
T Consensus        64 ~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~-p~~~~~~~~~rl~~~~~l~~~~~~  142 (213)
T 2fca_A           64 NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD-PWPKKRHEKRRLTYSHFLKKYEEV  142 (213)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-CCCSGGGGGGSTTSHHHHHHHHHH
T ss_pred             CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC-CCcCccccccccCcHHHHHHHHHH
Confidence            567789999999999874    44 4667777877776  889999999987665 44321        24789999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||.|++...
T Consensus       143 LkpgG~l~~~td  154 (213)
T 2fca_A          143 MGKGGSIHFKTD  154 (213)
T ss_dssp             HTTSCEEEEEES
T ss_pred             cCCCCEEEEEeC
Confidence            999999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.34  E-value=1e-06  Score=81.82  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=74.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEE-EccCCCCC---CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVG-LLSTYQLP---YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~-v~d~~~LP---fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|++||+.+.++...+... ..+...++   ++..+||+|+|..++++.    ..+|.|+.|+|||||+|++..
T Consensus       110 ~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl----~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          110 LVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL----NLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             EEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH----HHHHHHHHHHcCcCCEEEEEE
Confidence            4667899999999976654333222 12333333   345679999998888432    489999999999999999987


Q ss_pred             CCCCccccC----CCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           85 PPISWKTSY----RGWERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        85 pp~~~~~~~----~~w~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      .|..-..+.    .|..+++...+...+.+.+++...+|....
T Consensus       186 kPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~  228 (291)
T 3hp7_A          186 KPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG  228 (291)
T ss_dssp             CGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             CcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            654322111    244455554455666777777888887654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.34  E-value=4.2e-07  Score=79.87  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=60.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc--cChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--SYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    +..+.+.+++...++++ ++||+|+|..+..++.  ++...+++++.|+|||||.|++
T Consensus        65 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~  143 (252)
T 1wzn_A           65 EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (252)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            567889999999999875    45677888888888876 6899999875543443  2345799999999999999998


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       144 ~~~  146 (252)
T 1wzn_A          144 DFP  146 (252)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.32  E-value=2.6e-06  Score=70.43  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=55.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC-cEEEEccC-CCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP-AMVGLLST-YQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~-~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+...|+|+.|++.|+++    +++ ..+...+. +.++..+++||+|++..+++|     ..+++++.|+|||||+++
T Consensus        50 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~  124 (178)
T 3hm2_A           50 TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLV  124 (178)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEE
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEE
Confidence            4577889999999999875    444 23555554 444444489999999999944     479999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       125 ~~~~  128 (178)
T 3hm2_A          125 ANAV  128 (178)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9875

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.29  E-value=2.7e-06  Score=88.90  Aligned_cols=76  Identities=13%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             eeccCCCcHHHHHHHHHc----------CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----------GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----------gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKP   76 (294)
                      .+.+.|+|+.|++.|+++          +. .+.+.++|...+|+++++||+|+|..+++|+.+.. ..+++++.|+|||
T Consensus       748 ~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKP  827 (950)
T 3htx_A          748 TIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP  827 (950)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             eEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCC
Confidence            577889999999999872          33 46777889999999999999999999996655322 2489999999999


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      | .++++.+
T Consensus       828 G-~LIISTP  835 (950)
T 3htx_A          828 K-LLIVSTP  835 (950)
T ss_dssp             S-EEEEEEC
T ss_pred             C-EEEEEec
Confidence            9 8888764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.28  E-value=9.8e-07  Score=82.20  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=58.9

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      -.+.+.|+|++|++.|+++    |+ .+.+.++|+..+|  +++||+|++...    ..+...+++|+.|+|||||+|++
T Consensus       147 a~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv  220 (298)
T 3fpf_A          147 MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL----AEPKRRVFRNIHRYVDTETRIIY  220 (298)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT----CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC----ccCHHHHHHHHHHHcCCCcEEEE
Confidence            3577789999999999875    55 4667778877765  799999998644    35677899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ...
T Consensus       221 ~~~  223 (298)
T 3fpf_A          221 RTY  223 (298)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.25  E-value=8e-07  Score=76.64  Aligned_cols=112  Identities=18%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             eeeccCCCcHHHHHHH----HH----cCC-CcEEEEccCCCCCCCCCcccEEEecCcCc----ccccChHHHHHHHHhcc
Q 041513            8 MSFAPLDVHEAQVQFA----LE----RGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLV----PWTSYDGLYLMEIDRVL   74 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A----~e----rgv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~----h~~~d~~~~L~Ei~RVL   74 (294)
                      ..+.+.|+|+.|++.+    ++    .+. .+.+.++|.+.+|+++++ |.|+......    |+..++..+++|+.|+|
T Consensus        52 ~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~L  130 (218)
T 3mq2_A           52 RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVC  130 (218)
T ss_dssp             EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHc
Confidence            4577889999988853    22    234 567778899999999888 8887444321    23455568999999999


Q ss_pred             CCCcEEEEEcCCCCccccCCCc----ccChHHHHHHHHHHHHHHHhhceEeee
Q 041513           75 RPGGYWVVSGPPISWKTSYRGW----ERDAKDLQKEQISLENLATRLCWKKIA  123 (294)
Q Consensus        75 KPGG~~vis~pp~~~~~~~~~w----~~~~e~l~~~~~~le~l~~~lcW~~v~  123 (294)
                      ||||+|+++.....|.......    ..+.+.   ..+.+..+....+|+...
T Consensus       131 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          131 RPGASFLVALNLHAWRPSVPEVGEHPEPTPDS---ADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHH---HHHHHHHHHHHTTEEEEE
T ss_pred             CCCcEEEEEeccccccccccccccCCccchHH---HHHHHHHHHHHcCCCcee
Confidence            9999999976432222111100    011121   233477777778887654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.24  E-value=1.2e-06  Score=83.87  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccc----ccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW----TSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~----~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+...|+|+.|++.|+++    ++.+.+...|....++++++||+|+|...+++.    ..+...++.++.|+|||||++
T Consensus       257 ~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l  336 (381)
T 3dmg_A          257 EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVF  336 (381)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEE
Confidence            567789999999999874    456788888988888888999999999888431    334457999999999999999


Q ss_pred             EEEcCC
Q 041513           81 VVSGPP   86 (294)
Q Consensus        81 vis~pp   86 (294)
                      +++.++
T Consensus       337 ~iv~n~  342 (381)
T 3dmg_A          337 FLVSNP  342 (381)
T ss_dssp             EEEECT
T ss_pred             EEEEcC
Confidence            998864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.22  E-value=6e-07  Score=79.00  Aligned_cols=76  Identities=20%  Similarity=0.278  Sum_probs=59.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCC-C--CCCCcccEEEecCcCcccccChH--------HHHHHHHh
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQL-P--YPSRSFDVAHCSRCLVPWTSYDG--------LYLMEIDR   72 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~L-P--fpd~sFD~V~~s~~l~h~~~d~~--------~~L~Ei~R   72 (294)
                      .+.+.|+|+.|++.|+++    ++ ++.+..+|+..+ +  +++++||.|++.+.. +|.....        .+++++.|
T Consensus        60 ~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~-p~~~~~~~~rr~~~~~~l~~~~r  138 (218)
T 3dxy_A           60 DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPD-PWHKARHNKRRIVQVPFAELVKS  138 (218)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCC-CCCSGGGGGGSSCSHHHHHHHHH
T ss_pred             eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCC-CccchhhhhhhhhhHHHHHHHHH
Confidence            467789999999998764    44 466777776663 4  889999999998766 5543321        49999999


Q ss_pred             ccCCCcEEEEEcC
Q 041513           73 VLRPGGYWVVSGP   85 (294)
Q Consensus        73 VLKPGG~~vis~p   85 (294)
                      +|||||+|+++..
T Consensus       139 ~LkpGG~l~i~td  151 (218)
T 3dxy_A          139 KLQLGGVFHMATD  151 (218)
T ss_dssp             HEEEEEEEEEEES
T ss_pred             HcCCCcEEEEEeC
Confidence            9999999999875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.22  E-value=7.8e-06  Score=70.80  Aligned_cols=78  Identities=17%  Similarity=0.080  Sum_probs=58.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCC-CCCCCCCcccEEEecCcCccccc------------------ChH
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTY-QLPYPSRSFDVAHCSRCLVPWTS------------------YDG   64 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~-~LPfpd~sFD~V~~s~~l~h~~~------------------d~~   64 (294)
                      ..+.+.|+|+.|++.|+++    ++.+.+.++|.. ..++++++||+|+|.-.+++...                  ...
T Consensus        80 ~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (230)
T 3evz_A           80 CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSV  159 (230)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHH
Confidence            3567889999999999874    456777777754 34677899999999866633211                  125


Q ss_pred             HHHHHHHhccCCCcEEEEEcC
Q 041513           65 LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+++++.|+|||||++++..+
T Consensus       160 ~~l~~~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          160 KLLEEAFDHLNPGGKVALYLP  180 (230)
T ss_dssp             HHHHHHGGGEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCeEEEEEec
Confidence            799999999999999999764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.20  E-value=8.8e-07  Score=78.80  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=57.9

Q ss_pred             eeccCCCcHH------HHHHHHHc----CC--CcEEEEcc---CCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhc
Q 041513            9 SFAPLDVHEA------QVQFALER----GL--PAMVGLLS---TYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~------mlq~A~er----gv--~~~~~v~d---~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RV   73 (294)
                      .+.+.|+|+.      |++.|+++    ++  .+.+...|   ...+|+++++||+|+|..+++|+ .++..+++.+.++
T Consensus        70 ~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~l  148 (275)
T 3bkx_A           70 HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYF-ASANALALLFKNM  148 (275)
T ss_dssp             EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGS-SCHHHHHHHHHHH
T ss_pred             EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhC-CCHHHHHHHHHHH
Confidence            4666788876      88888775    23  35666676   66788999999999999999554 5565666667777


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      ++|||++++...
T Consensus       149 ~~~gG~l~~~~~  160 (275)
T 3bkx_A          149 AAVCDHVDVAEW  160 (275)
T ss_dssp             TTTCSEEEEEEE
T ss_pred             hCCCCEEEEEEe
Confidence            777999999873

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.20  E-value=2.7e-06  Score=74.97  Aligned_cols=71  Identities=10%  Similarity=0.070  Sum_probs=57.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCC---CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYP---SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfp---d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+|+.|++.|+++    ++ ++.+.+++++.++++   +++||+|+|...     .+...+++++.|+|||||+|
T Consensus        96 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~-----~~~~~~l~~~~~~LkpgG~l  170 (240)
T 1xdz_A           96 HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV-----ARLSVLSELCLPLVKKNGLF  170 (240)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC-----SCHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc-----CCHHHHHHHHHHhcCCCCEE
Confidence            466779999999999874    55 467777888777775   689999998752     35668999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++..
T Consensus       171 ~~~~  174 (240)
T 1xdz_A          171 VALK  174 (240)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9864

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.19  E-value=2.7e-07  Score=89.44  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCC------CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYP------SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfp------d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|.    .....+.+.++|+..+||.      +++||+|+|..+  |+..+...+|+|+.|+|||||+|++
T Consensus       249 ~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi  322 (419)
T 3sso_A          249 QIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVI  322 (419)
T ss_dssp             EEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEE
Confidence            455667777773    2334578888999999998      799999998754  4445667899999999999999999


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       323 ~D  324 (419)
T 3sso_A          323 ED  324 (419)
T ss_dssp             EC
T ss_pred             Ee
Confidence            86

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.19  E-value=2.1e-06  Score=79.30  Aligned_cols=74  Identities=26%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +.|++.|+++    ++  .+.+...|.. .|+|. .||+|+|..++|||.++ ...+|+++.|+|||||+++
T Consensus       195 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~  271 (332)
T 3i53_A          195 SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVL  271 (332)
T ss_dssp             EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            3445699 9999999875    43  3667777765 56666 89999999999777644 2579999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       272 i~e~  275 (332)
T 3i53_A          272 VIEA  275 (332)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9874

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.19  E-value=1.9e-06  Score=81.10  Aligned_cols=75  Identities=12%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCC--CCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~   79 (294)
                      .+...|+ +.|++.|+++    ++  .+.+...|....  |+| ++||+|++..+++||.++. ..+|+++.|+|||||+
T Consensus       205 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~  282 (363)
T 3dp7_A          205 EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSK  282 (363)
T ss_dssp             EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCE
T ss_pred             EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence            4666798 9999999875    33  366777776664  677 8899999999997776443 4689999999999999


Q ss_pred             EEEEcC
Q 041513           80 WVVSGP   85 (294)
Q Consensus        80 ~vis~p   85 (294)
                      +++...
T Consensus       283 l~i~e~  288 (363)
T 3dp7_A          283 VYIMET  288 (363)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            999774

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.18  E-value=1.2e-06  Score=74.06  Aligned_cols=77  Identities=13%  Similarity=0.019  Sum_probs=60.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCCCcccEEEecCcCcccccChHHHHHHHHh--ccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR--VLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~R--VLKPGG~   79 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+.++|...++  +++++||+|++...+++...+...++.++.+  +|||||+
T Consensus        69 ~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~  148 (189)
T 3p9n_A           69 SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV  148 (189)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence            467789999999999875    44 4667777766553  5688999999988874433556689999999  9999999


Q ss_pred             EEEEcC
Q 041513           80 WVVSGP   85 (294)
Q Consensus        80 ~vis~p   85 (294)
                      |++..+
T Consensus       149 l~~~~~  154 (189)
T 3p9n_A          149 AVVERA  154 (189)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.18  E-value=1.1e-06  Score=80.18  Aligned_cols=75  Identities=12%  Similarity=0.025  Sum_probs=55.9

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCC-----CCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPY-----PSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPf-----pd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++|++.|+++.... ....+...+++     .+++||+|+|..+++|+.. +...+++++.|+| |||++++
T Consensus        69 ~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~l  146 (261)
T 3iv6_A           69 SVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRA  146 (261)
T ss_dssp             EEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEE
Confidence            5677899999999999875322 11223333333     2679999999999977653 3456999999999 9999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       147 S~~  149 (261)
T 3iv6_A          147 SVK  149 (261)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            985

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.17  E-value=1.4e-05  Score=68.06  Aligned_cols=73  Identities=11%  Similarity=-0.042  Sum_probs=58.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|+|++|++.|+++    ++ .+.+...+.........+||+|++..++ +   +...+++++.|+|||||++++.
T Consensus        66 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~-~---~~~~~l~~~~~~LkpgG~l~~~  141 (204)
T 3e05_A           66 RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSG-G---MLEEIIDAVDRRLKSEGVIVLN  141 (204)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCT-T---CHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCC-c---CHHHHHHHHHHhcCCCeEEEEE
Confidence            466789999999999875    44 3566667765444445789999999887 3   5668999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       142 ~~  143 (204)
T 3e05_A          142 AV  143 (204)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.15  E-value=1.3e-06  Score=80.23  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+| .+++.|+++    ++  .+.+...|....+++++ ||+|+|..+++||.++ ...+++++.|+|||||+++
T Consensus       191 ~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~  268 (335)
T 2r3s_A          191 EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVI  268 (335)
T ss_dssp             EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEE
Confidence            56777999 999999875    44  36777788777788766 9999999999776432 2579999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       269 i~e~  272 (335)
T 2r3s_A          269 VFDF  272 (335)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.14  E-value=1.2e-05  Score=69.58  Aligned_cols=71  Identities=8%  Similarity=-0.049  Sum_probs=55.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++|++.|+++    +++  +.+...+..........||+|++..++     +.. ++.++.|+|||||++++
T Consensus        79 ~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~  152 (204)
T 3njr_A           79 RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVA  152 (204)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEE
Confidence            466789999999999875    454  667777776633334679999988755     455 99999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +..
T Consensus       153 ~~~  155 (204)
T 3njr_A          153 NAV  155 (204)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            875

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.13  E-value=1.8e-06  Score=76.90  Aligned_cols=76  Identities=17%  Similarity=0.151  Sum_probs=57.1

Q ss_pred             eeccCCCcHHHHHHHHHc----------CC-CcEEEEccCCC-CC--CCCCcccEEEecCcCcccccC--------hHHH
Q 041513            9 SFAPLDVHEAQVQFALER----------GL-PAMVGLLSTYQ-LP--YPSRSFDVAHCSRCLVPWTSY--------DGLY   66 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----------gv-~~~~~v~d~~~-LP--fpd~sFD~V~~s~~l~h~~~d--------~~~~   66 (294)
                      .+.+.|+|+.|++.|+++          +. ++.+..+|+.. +|  |++++||.|++.+.- +|...        ...+
T Consensus        72 ~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~d-p~~k~~h~krr~~~~~~  150 (235)
T 3ckk_A           72 LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD-PHFKRTKHKWRIISPTL  150 (235)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC------------CCCHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCC-chhhhhhhhhhhhhHHH
Confidence            567789999999998753          33 46777788775 77  899999999876654 34211        1369


Q ss_pred             HHHHHhccCCCcEEEEEcC
Q 041513           67 LMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        67 L~Ei~RVLKPGG~~vis~p   85 (294)
                      ++++.|+|||||.|++...
T Consensus       151 l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          151 LAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             HHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHCCCCCEEEEEeC
Confidence            9999999999999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.12  E-value=1.6e-06  Score=73.38  Aligned_cols=76  Identities=12%  Similarity=0.078  Sum_probs=58.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC-CCCCcccEEEecCcCccc-----c---cChHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPW-----T---SYDGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~-----~---~d~~~~L~Ei~RV   73 (294)
                      .+.+.|+++.|++.|+++    ++  .+.+...|...++ +.+++||+|++...+.+.     .   .+...+++++.|+
T Consensus        49 ~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  128 (197)
T 3eey_A           49 RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMEL  128 (197)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHh
Confidence            567789999999999875    33  4667777877776 777999999988655221     1   1234699999999


Q ss_pred             cCCCcEEEEEc
Q 041513           74 LRPGGYWVVSG   84 (294)
Q Consensus        74 LKPGG~~vis~   84 (294)
                      |||||++++..
T Consensus       129 Lk~gG~l~~~~  139 (197)
T 3eey_A          129 LVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcCCCEEEEEE
Confidence            99999999986

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.11  E-value=2.8e-06  Score=72.50  Aligned_cols=93  Identities=15%  Similarity=0.073  Sum_probs=67.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++. +.+...|...  +.+++||+|++...+++    ...+++++.|+|||||+++++
T Consensus        85 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A           85 SVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEE
Confidence            567789999999999875    444 6676677644  45789999999987733    247999999999999999997


Q ss_pred             cCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513           84 GPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE  124 (294)
Q Consensus        84 ~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~  124 (294)
                      .....          .       ...+.++.+..+++.+..
T Consensus       159 ~~~~~----------~-------~~~~~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          159 GIDYL----------Q-------LPKIEQALAENSFQIDLK  182 (205)
T ss_dssp             EEEGG----------G-------HHHHHHHHHHTTEEEEEE
T ss_pred             ecCcc----------c-------HHHHHHHHHHcCCceEEe
Confidence            63210          1       123555666677776653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.10  E-value=2.8e-06  Score=72.66  Aligned_cols=71  Identities=14%  Similarity=0.024  Sum_probs=57.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|+|+.+++.|+++    ++ .+.+...|....+.++++||+|++..+++|.. +      ++.++|||||+++++
T Consensus       101 ~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~-~------~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          101 HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIP-T------ALMTQLDEGGILVLP  173 (210)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCC-T------HHHHTEEEEEEEEEE
T ss_pred             EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhh-H------HHHHhcccCcEEEEE
Confidence            466789999999999875    44 36677778777777789999999999995543 2      689999999999999


Q ss_pred             cCC
Q 041513           84 GPP   86 (294)
Q Consensus        84 ~pp   86 (294)
                      .++
T Consensus       174 ~~~  176 (210)
T 3lbf_A          174 VGE  176 (210)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            875

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.06  E-value=1.7e-06  Score=79.82  Aligned_cols=75  Identities=8%  Similarity=-0.059  Sum_probs=57.3

Q ss_pred             eeccCCCcHHHHHHHHHcC--C---CcEEEEccCCCCC------CCCCccc-----EEEecCcCcccccC---hHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG--L---PAMVGLLSTYQLP------YPSRSFD-----VAHCSRCLVPWTSY---DGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v---~~~~~v~d~~~LP------fpd~sFD-----~V~~s~~l~h~~~d---~~~~L~E   69 (294)
                      .+...|.|+.||+.|+++-  .   .+.+.++|...++      ..+++||     .|+++.+| ||..+   +..++++
T Consensus       107 rVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avL-H~l~d~~~p~~~l~~  185 (277)
T 3giw_A          107 RVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIV-HFVLDEDDAVGIVRR  185 (277)
T ss_dssp             EEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCG-GGSCGGGCHHHHHHH
T ss_pred             EEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhH-hcCCchhhHHHHHHH
Confidence            4666799999999998862  1   2567778877652      1146676     58888888 66655   4579999


Q ss_pred             HHhccCCCcEEEEEc
Q 041513           70 IDRVLRPGGYWVVSG   84 (294)
Q Consensus        70 i~RVLKPGG~~vis~   84 (294)
                      +.++|+|||+|+++.
T Consensus       186 l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          186 LLEPLPSGSYLAMSI  200 (277)
T ss_dssp             HHTTSCTTCEEEEEE
T ss_pred             HHHhCCCCcEEEEEe
Confidence            999999999999986

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.04  E-value=4.4e-06  Score=78.47  Aligned_cols=75  Identities=13%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCc--ccccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLV--PWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~--h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+| +|++.|+++    ++.  +.+..++.+.+++++++||+|+|..+.+  +.......++.++.|+|||||++
T Consensus        91 ~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l  169 (349)
T 3q7e_A           91 KVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI  169 (349)
T ss_dssp             EEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEE
Confidence            46677999 499988764    443  6788889999999999999999965432  34456778999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      +...
T Consensus       170 i~~~  173 (349)
T 3q7e_A          170 FPDR  173 (349)
T ss_dssp             ESCE
T ss_pred             cccc
Confidence            8543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.04  E-value=5.7e-06  Score=72.16  Aligned_cols=71  Identities=10%  Similarity=0.015  Sum_probs=50.0

Q ss_pred             eeccCCCcHHHHH----HHHHcCCCcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQ----FALERGLPAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq----~A~ergv~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+|+.|++    .|+++ .++.+.++|+..    .+++ ++||+|+|.... +  .+...+++|+.|+|||||+|
T Consensus        83 ~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~~~-~--~~~~~~l~~~~r~LkpgG~l  157 (210)
T 1nt2_A           83 IIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDIAQ-K--NQIEILKANAEFFLKEKGEV  157 (210)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECCCS-T--THHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEeccC-h--hHHHHHHHHHHHHhCCCCEE
Confidence            5678899998654    44443 245555666655    3565 899999987322 2  23334699999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      +++.
T Consensus       158 ~i~~  161 (210)
T 1nt2_A          158 VIMV  161 (210)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.04  E-value=1.7e-06  Score=84.19  Aligned_cols=74  Identities=14%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             eccCCCcHHHHHHHHHc-----------CC---CcEEEEccCCCCCCCC--CcccEEEecCcCcccccChHHHHHHHHhc
Q 041513           10 FAPLDVHEAQVQFALER-----------GL---PAMVGLLSTYQLPYPS--RSFDVAHCSRCLVPWTSYDGLYLMEIDRV   73 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er-----------gv---~~~~~v~d~~~LPfpd--~sFD~V~~s~~l~h~~~d~~~~L~Ei~RV   73 (294)
                      +.++|+|+.|++.|++.           |+   .+.+.++|...+||++  ..||+|++...+ + ..+....|.|+.|+
T Consensus       200 VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~Ei~Rv  277 (438)
T 3uwp_A          200 HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLKERFAN  277 (438)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHHHHHTT
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHHHHHHc
Confidence            67889999999888752           32   4677888999999875  579999987665 3 45666899999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||+|+++..
T Consensus       278 LKPGGrIVssE~  289 (438)
T 3uwp_A          278 MKEGGRIVSSKP  289 (438)
T ss_dssp             SCTTCEEEESSC
T ss_pred             CCCCcEEEEeec
Confidence            999999999864

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.03  E-value=6.8e-06  Score=77.38  Aligned_cols=74  Identities=20%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +.+++.|+++    ++  .+.+...|.. .|+|. .||+|++..++++|.++. ..+|+++.|+|||||+|+
T Consensus       228 ~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~  304 (369)
T 3gwz_A          228 RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLL  304 (369)
T ss_dssp             EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4566799 9999999874    33  3667777766 67777 899999999996665432 269999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       305 i~e~  308 (369)
T 3gwz_A          305 VIDN  308 (369)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.00  E-value=4.1e-06  Score=78.27  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccc----ccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW----TSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~----~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+...|+|+.|++.|+++    ++...+...+...  +.+++||+|+|...+++.    ..+...+++++.|+|||||.+
T Consensus       222 ~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l  299 (343)
T 2pjd_A          222 RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL  299 (343)
T ss_dssp             BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEE
Confidence            567789999999999875    4556666666544  447899999999998431    233457999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      ++..+
T Consensus       300 ~i~~~  304 (343)
T 2pjd_A          300 RIVAN  304 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.00  E-value=1.1e-05  Score=71.98  Aligned_cols=71  Identities=17%  Similarity=0.090  Sum_probs=58.3

Q ss_pred             eeccCCCcHHHHHHHHHc-----C--C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER-----G--L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-----g--v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+...|+|+.+++.|+++     +  . .+.+...|...+++++++||+|++..      .++..++.++.|+|||||++
T Consensus       126 ~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l  199 (280)
T 1i9g_A          126 QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVL  199 (280)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEE
Confidence            466779999999999875     3  2 46677778888888899999999832      24558999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      ++..+
T Consensus       200 ~~~~~  204 (280)
T 1i9g_A          200 MVYVA  204 (280)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99886

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.99  E-value=5.7e-06  Score=77.25  Aligned_cols=74  Identities=27%  Similarity=0.333  Sum_probs=57.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +.|++.|+++    ++  .+.+...|... +++.+ ||+|++..+++||.+.. ..+|+++.|+|||||+++
T Consensus       208 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~  284 (374)
T 1qzz_A          208 RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL  284 (374)
T ss_dssp             EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            4566799 9999999874    44  36677777544 45544 99999999997765432 379999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       285 i~e~  288 (374)
T 1qzz_A          285 VLDR  288 (374)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9765

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.99  E-value=4.2e-06  Score=72.05  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=58.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccCCCC-C-CCCCc-ccEEEecCcCcccccChHHHHHHH--HhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQL-P-YPSRS-FDVAHCSRCLVPWTSYDGLYLMEI--DRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~L-P-fpd~s-FD~V~~s~~l~h~~~d~~~~L~Ei--~RVLKP   76 (294)
                      .+.+.|+|+.|++.|+++    ++   .+.+..+|...+ + +++++ ||+|++...+ | ..+...++.++  .|+|||
T Consensus        78 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-~-~~~~~~~l~~~~~~~~Lkp  155 (201)
T 2ift_A           78 KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPF-H-FNLAEQAISLLCENNWLKP  155 (201)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCS-S-SCHHHHHHHHHHHTTCEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCC-C-CccHHHHHHHHHhcCccCC
Confidence            467789999999999874    44   466767775543 3 24788 9999998776 4 34455789999  789999


Q ss_pred             CcEEEEEcCCC
Q 041513           77 GGYWVVSGPPI   87 (294)
Q Consensus        77 GG~~vis~pp~   87 (294)
                      ||.|+++..+.
T Consensus       156 gG~l~i~~~~~  166 (201)
T 2ift_A          156 NALIYVETEKD  166 (201)
T ss_dssp             EEEEEEEEESS
T ss_pred             CcEEEEEECCC
Confidence            99999987543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.98  E-value=1.7e-05  Score=69.64  Aligned_cols=71  Identities=11%  Similarity=0.043  Sum_probs=58.5

Q ss_pred             eeccCCCcHHHHHHHHHc-----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER-----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+|+.+++.|+++     +. .+.+...|....++++++||+|++.     . .++..++.++.|+|||||++++
T Consensus       123 ~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~  196 (258)
T 2pwy_A          123 LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD-----L-MEPWKVLEKAALALKPDRFLVA  196 (258)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC-----C-cCHHHHHHHHHHhCCCCCEEEE
Confidence            466779999999999876     53 4667778888888999999999973     2 3455899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       197 ~~~  199 (258)
T 2pwy_A          197 YLP  199 (258)
T ss_dssp             EES
T ss_pred             EeC
Confidence            886

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.98  E-value=1.7e-05  Score=73.48  Aligned_cols=75  Identities=13%  Similarity=0.123  Sum_probs=56.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC-CCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+...|+ +.+++.|+++    ++  .+.+...|....+ +..+.||+|++..++|||.++ ...+|+++.|+|||||+|
T Consensus       205 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l  283 (352)
T 3mcz_A          205 TGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGAL  283 (352)
T ss_dssp             EEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEE
T ss_pred             eEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3445688 6788888764    43  3667777766665 245669999999999777543 257999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++..
T Consensus       284 ~i~e  287 (352)
T 3mcz_A          284 LILT  287 (352)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9976

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.98  E-value=4.9e-06  Score=72.16  Aligned_cols=71  Identities=10%  Similarity=-0.012  Sum_probs=55.9

Q ss_pred             eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+...|+|+.|++.|+++..   .+.+...+......++++||+|++..+++|+.       .++.|+|||||+++++.+
T Consensus        94 ~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A           94 KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred             EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEc
Confidence            46678999999999988632   56677777665333578999999999996543       479999999999999986


Q ss_pred             C
Q 041513           86 P   86 (294)
Q Consensus        86 p   86 (294)
                      +
T Consensus       167 ~  167 (231)
T 1vbf_A          167 V  167 (231)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.97  E-value=7.4e-06  Score=76.49  Aligned_cols=73  Identities=16%  Similarity=0.235  Sum_probs=59.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +.|++.|+++    ++  .+.+...|....|+++.  |+|++..+++||.++ ...+|+++.|+|||||+++
T Consensus       216 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~  292 (359)
T 1x19_A          216 DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLL  292 (359)
T ss_dssp             EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            4556689 8999999875    44  26777788887788765  999999999777542 4579999999999999998


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       293 i~e  295 (359)
T 1x19_A          293 ILD  295 (359)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            876

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.95  E-value=2.1e-05  Score=70.78  Aligned_cols=71  Identities=10%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             eeccCCCcHHHHHHHHHc-----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER-----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++     +. .+.+...|... ++++++||+|++     |. .++..+++++.|+|||||++++
T Consensus       137 ~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~-~~~~~~l~~~~~~LkpgG~l~i  209 (275)
T 1yb2_A          137 TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA-----DI-PDPWNHVQKIASMMKPGSVATF  209 (275)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE-----CC-SCGGGSHHHHHHTEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE-----cC-cCHHHHHHHHHHHcCCCCEEEE
Confidence            566779999999999875     43 36666677666 788889999998     22 3555899999999999999999


Q ss_pred             EcCC
Q 041513           83 SGPP   86 (294)
Q Consensus        83 s~pp   86 (294)
                      +.+.
T Consensus       210 ~~~~  213 (275)
T 1yb2_A          210 YLPN  213 (275)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            9863

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.95  E-value=1.1e-05  Score=72.20  Aligned_cols=72  Identities=17%  Similarity=0.048  Sum_probs=56.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCC---CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYP---SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfp---d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+...|+|+.|+++|+++    ++ ++.+..++++.++..   +++||+|+|..+-     +...++.++.|+|||||+|
T Consensus       106 ~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~-----~~~~ll~~~~~~LkpgG~l  180 (249)
T 3g89_A          106 ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVA-----PLCVLSELLLPFLEVGGAA  180 (249)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESSC-----CHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCcC-----CHHHHHHHHHHHcCCCeEE
Confidence            466789999999999874    55 467777888777754   5899999986432     4458999999999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      ++...
T Consensus       181 ~~~~g  185 (249)
T 3g89_A          181 VAMKG  185 (249)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88553

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.92  E-value=6.1e-06  Score=77.31  Aligned_cols=72  Identities=18%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecC---cCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSR---CLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~---~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+.+.|+|+ |++.|+++    ++  .+.+..++.+.+++++++||+|++..   ++ +...+...++.++.|+|||||.
T Consensus        89 ~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~  166 (340)
T 2fyt_A           89 KVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL-LFESMLDSVLYAKNKYLAKGGS  166 (340)
T ss_dssp             EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTB-TTTCHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhc-cCHHHHHHHHHHHHhhcCCCcE
Confidence            456678896 99988764    33  46777788999999999999999876   34 3334455799999999999999


Q ss_pred             EEE
Q 041513           80 WVV   82 (294)
Q Consensus        80 ~vi   82 (294)
                      ++.
T Consensus       167 lip  169 (340)
T 2fyt_A          167 VYP  169 (340)
T ss_dssp             EES
T ss_pred             EEc
Confidence            983

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.92  E-value=1.3e-05  Score=70.15  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=53.3

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCC----CCCCCCcccEEEecCcCcccccCh---HHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYD---GLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~---~~~L~Ei~RVLKPGG   78 (294)
                      .+.+.|+|+.|++.|+++.   ..+.+...++..    ++++ ++||+|++     + ..++   ..+++++.|+|||||
T Consensus       100 ~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-----~-~~~~~~~~~~l~~~~~~LkpgG  172 (230)
T 1fbn_A          100 IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE-----D-VAQPNQAEILIKNAKWFLKKGG  172 (230)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE-----C-CCSTTHHHHHHHHHHHHEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE-----e-cCChhHHHHHHHHHHHhCCCCc
Confidence            4667899999999998753   245666777777    7887 88999982     2 2333   568999999999999


Q ss_pred             EEEEE
Q 041513           79 YWVVS   83 (294)
Q Consensus        79 ~~vis   83 (294)
                      +++++
T Consensus       173 ~l~i~  177 (230)
T 1fbn_A          173 YGMIA  177 (230)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.91  E-value=8.8e-06  Score=74.89  Aligned_cols=74  Identities=18%  Similarity=-0.017  Sum_probs=57.3

Q ss_pred             eeccCCCcHHHHHHHHHcC------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALERG------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +.|++.|+++-      -.+.+...|... +++ +.||+|++..+++||.++. ..+++++.|+|||||+++
T Consensus       193 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~  269 (334)
T 2ip2_A          193 RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVV  269 (334)
T ss_dssp             EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            4566788 88888887752      246677777655 666 6799999999997775332 379999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       270 i~e~  273 (334)
T 2ip2_A          270 VIER  273 (334)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9864

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.90  E-value=3.7e-05  Score=63.20  Aligned_cols=69  Identities=7%  Similarity=-0.027  Sum_probs=56.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+...+... ++++++||+|++..+     .+...+++++.|+  |||+++++
T Consensus        59 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~  130 (183)
T 2yxd_A           59 FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVAN  130 (183)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEE
Confidence            566789999999999875    43 46666777665 788889999999877     4566899999999  99999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       131 ~~  132 (183)
T 2yxd_A          131 TI  132 (183)
T ss_dssp             ES
T ss_pred             ec
Confidence            75

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.89  E-value=1.1e-05  Score=72.55  Aligned_cols=72  Identities=11%  Similarity=0.005  Sum_probs=54.4

Q ss_pred             eccCCCcHHHHHHHHHcC--C-CcEEEEcc---CCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513           10 FAPLDVHEAQVQFALERG--L-PAMVGLLS---TYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg--v-~~~~~v~d---~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      +.+.|+|+.|++.|+++.  . ++.....+   .+..++..++||+|++....   ..+...++.|+.|+|||||+++++
T Consensus       105 V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~---~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          105 IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQ---PEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccC---ChhHHHHHHHHHHhccCCCEEEEE
Confidence            556799999999998753  2 34444444   34567888999999876433   345668999999999999999997


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       182 i  182 (233)
T 4df3_A          182 I  182 (233)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.87  E-value=1.9e-05  Score=65.35  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+|+.+++.|+++    ++  .+.+...+... ++++ +.||+|++..++.|    ...++.++.|+|+|||+++
T Consensus        57 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~l~~gG~l~  131 (192)
T 1l3i_A           57 RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRII  131 (192)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCchHH----HHHHHHHHHHhcCCCcEEE
Confidence            566779999999999874    44  45566666544 4444 68999999988733    4589999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       132 ~~~~  135 (192)
T 1l3i_A          132 VTAI  135 (192)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9875

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.86  E-value=3.2e-05  Score=68.91  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCC--CCCCcccEEEecCcCccc----c---------------c
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLP--YPSRSFDVAHCSRCLVPW----T---------------S   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~----~---------------~   61 (294)
                      .+.+.|+++.|++.|+++    ++.  +.+..+|...++  +++++||+|+|.-.+.+.    .               .
T Consensus        74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~  153 (259)
T 3lpm_A           74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMC  153 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------H
T ss_pred             cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccC
Confidence            577889999999999875    443  677777877665  668999999996444221    0               1


Q ss_pred             ChHHHHHHHHhccCCCcEEEEEcCC
Q 041513           62 YDGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        62 d~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      +...++.++.|+|||||+|++..++
T Consensus       154 ~~~~~l~~~~~~LkpgG~l~~~~~~  178 (259)
T 3lpm_A          154 TLEDTIRVAASLLKQGGKANFVHRP  178 (259)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             CHHHHHHHHHHHccCCcEEEEEEcH
Confidence            1246999999999999999997654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.85  E-value=5.7e-07  Score=78.77  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=59.5

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+.+.|+|+.|++.|+++    ++  .+.+.++|...++ ++++||+|++...++ +..+....+.++.|+|||||+++
T Consensus       101 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~-~~~~~~~~~~~~~~~L~pgG~~i  178 (241)
T 3gdh_A          101 MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG-GPDYATAETFDIRTMMSPDGFEI  178 (241)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS-SGGGGGSSSBCTTTSCSSCHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC-CcchhhhHHHHHHhhcCCcceeH
Confidence            3567889999999999875    44  4677778877776 678999999998884 45555568889999999999977


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       179 ~~~  181 (241)
T 3gdh_A          179 FRL  181 (241)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.85  E-value=3.4e-05  Score=67.86  Aligned_cols=70  Identities=19%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+|+.+++.|+++    +++  +.+...|... ++++++||+|++..      .++..++.++.|+|||||++++
T Consensus       120 ~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~  192 (255)
T 3mb5_A          120 RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIEEENVDHVILDL------PQPERVVEHAAKALKPGGFFVA  192 (255)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCCCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEE
T ss_pred             EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccCCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEE
Confidence            466779999999999876    543  5666677664 48889999999742      3455799999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       193 ~~~  195 (255)
T 3mb5_A          193 YTP  195 (255)
T ss_dssp             EES
T ss_pred             EEC
Confidence            876

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.84  E-value=2.5e-05  Score=65.35  Aligned_cols=71  Identities=11%  Similarity=-0.040  Sum_probs=55.5

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC--------hHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+|+.|++.    ...+.+.++|... ++++++||+|+|+..+++..+.        ...++.++.+.| |||.+
T Consensus        46 ~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l  119 (170)
T 3q87_B           46 TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGML  119 (170)
T ss_dssp             EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEE
T ss_pred             cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEE
Confidence            67788999999988    2345666778766 7888999999999888432222        247899999999 99999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++.+
T Consensus       120 ~~~~~  124 (170)
T 3q87_B          120 YLLVI  124 (170)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.84  E-value=5.6e-06  Score=73.07  Aligned_cols=76  Identities=11%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             eeeccCCCc-HHHHHHH---HHc----CC-CcEEEEccCCCCCCC-CCcccEEEecCcCc----ccccChHHHHHHHHhc
Q 041513            8 MSFAPLDVH-EAQVQFA---LER----GL-PAMVGLLSTYQLPYP-SRSFDVAHCSRCLV----PWTSYDGLYLMEIDRV   73 (294)
Q Consensus         8 ~s~ap~D~S-~~mlq~A---~er----gv-~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~----h~~~d~~~~L~Ei~RV   73 (294)
                      ..+.+.|+| +.|++.|   +++    ++ ++.+.+++++.+|.. .+.||.|++.+...    |...+...+|+|+.|+
T Consensus        49 ~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~  128 (225)
T 3p2e_A           49 TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADL  128 (225)
T ss_dssp             EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHh
Confidence            356788999 8888877   443    44 467777888888642 24555555544321    1222334789999999


Q ss_pred             cCCCcEEEEE
Q 041513           74 LRPGGYWVVS   83 (294)
Q Consensus        74 LKPGG~~vis   83 (294)
                      |||||+|++.
T Consensus       129 LkpGG~l~i~  138 (225)
T 3p2e_A          129 AKKEAHFEFV  138 (225)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9999999993

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.84  E-value=1.4e-05  Score=68.79  Aligned_cols=76  Identities=9%  Similarity=-0.007  Sum_probs=58.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHh--ccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR--VLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~R--VLKPGG~~   80 (294)
                      .+...|+|+.|++.|+++    ++ .+.+.+.|... +++++++||+|++...+ |. .....+++++.+  +|||||++
T Consensus        79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l  156 (202)
T 2fpo_A           79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALI  156 (202)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEE
Confidence            567889999999999874    34 56677777655 67778899999998775 43 445578888865  69999999


Q ss_pred             EEEcCC
Q 041513           81 VVSGPP   86 (294)
Q Consensus        81 vis~pp   86 (294)
                      +++..+
T Consensus       157 ~i~~~~  162 (202)
T 2fpo_A          157 YVESEV  162 (202)
T ss_dssp             EEEEEG
T ss_pred             EEEECC
Confidence            998753

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.84  E-value=1.3e-05  Score=73.86  Aligned_cols=71  Identities=13%  Similarity=0.044  Sum_probs=57.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|++|++.|+++    +++ +.+...|....+.++++||+|++..+++|..       .++.++|||||+++++
T Consensus       102 ~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          102 LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEE
Confidence            367789999999999875    443 6677778777666678999999999996543       5789999999999998


Q ss_pred             cCC
Q 041513           84 GPP   86 (294)
Q Consensus        84 ~pp   86 (294)
                      ..+
T Consensus       175 ~~~  177 (317)
T 1dl5_A          175 INL  177 (317)
T ss_dssp             BCB
T ss_pred             ECC
Confidence            754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.83  E-value=1.2e-05  Score=74.78  Aligned_cols=75  Identities=25%  Similarity=0.315  Sum_probs=56.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +.|++.|+++    ++  .+.+...|... +++.+ ||+|++..+++||.+.. ..+++++.|+|||||+++
T Consensus       209 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~  285 (360)
T 1tw3_A          209 SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRIL  285 (360)
T ss_dssp             EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            3445677 8899998764    34  46677777544 45544 99999999997775432 379999999999999999


Q ss_pred             EEcCC
Q 041513           82 VSGPP   86 (294)
Q Consensus        82 is~pp   86 (294)
                      +..+.
T Consensus       286 i~e~~  290 (360)
T 1tw3_A          286 IHERD  290 (360)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            98753

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.82  E-value=2.3e-05  Score=66.53  Aligned_cols=71  Identities=14%  Similarity=0.065  Sum_probs=55.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.+++.|+++    +++ +.+...+...++ ++++||+|++.. +    .+...++.++.++|||||++++.
T Consensus        91 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~----~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A           91 HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F----ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c----CCHHHHHHHHHHhcCCCcEEEEE
Confidence            566789999999999874    443 667777777765 568999999753 2    34568999999999999999997


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       165 ~~  166 (207)
T 1jsx_A          165 KG  166 (207)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.82  E-value=4.6e-05  Score=68.45  Aligned_cols=76  Identities=9%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCccc------------c-----------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPW------------T-----------   60 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~------------~-----------   60 (294)
                      .+.+.|+|+.+++.|+++    +++ +.+.++|... ++++++||+|++...++..            .           
T Consensus       135 ~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g  213 (276)
T 2b3t_A          135 EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSG  213 (276)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcH
Confidence            566779999999999875    443 6666666554 4557899999997433211            1           


Q ss_pred             -cChHHHHHHHHhccCCCcEEEEEcC
Q 041513           61 -SYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        61 -~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                       .....++.++.++|||||++++..+
T Consensus       214 ~~~~~~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          214 MADIVHIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             THHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence             1234688999999999999999764

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.81  E-value=6.2e-06  Score=77.58  Aligned_cols=70  Identities=13%  Similarity=0.101  Sum_probs=55.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH--HHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG--LYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~--~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+ +.|++.|++. ..+.+...|... ++|+  ||+|++..+++||. ++.  .+|+++.|+|||||+|++..
T Consensus       235 ~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          235 KGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3455688 8999888763 246677777666 7775  99999999996664 444  79999999999999999985

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.81  E-value=4.1e-05  Score=72.85  Aligned_cols=106  Identities=10%  Similarity=0.022  Sum_probs=71.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC----CcEEEEccCCCCCCCCCcccEEEecCcCccc--c-cC-hHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL----PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW--T-SY-DGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv----~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~--~-~d-~~~~L~Ei~RVLKP   76 (294)
                      .+.+.|+|+.|++.|+++    ++    .+.+...|... ++++++||+|+|...+++.  . .. ...+++++.|+|||
T Consensus       248 ~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp  326 (375)
T 4dcm_A          248 KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  326 (375)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE
T ss_pred             EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC
Confidence            567789999999999874    33    35566677665 6788999999999888432  1 11 12589999999999


Q ss_pred             CcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeC
Q 041513           77 GGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRK  133 (294)
Q Consensus        77 GG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~K  133 (294)
                      ||+++++.+...      ++          ...++++..  ..+.+++.....|.+-
T Consensus       327 gG~l~iv~n~~~------~~----------~~~l~~~fg--~~~~~a~~~~F~V~~~  365 (375)
T 4dcm_A          327 NGELYIVANRHL------DY----------FHKLKKIFG--NCTTIATNNKFVVLKA  365 (375)
T ss_dssp             EEEEEEEEETTS------CH----------HHHHHHHHS--CCEEEEECSSEEEEEE
T ss_pred             CcEEEEEEECCc------CH----------HHHHHHhcC--CEEEEeeCCCEEEEEE
Confidence            999999874211      11          123443333  4666777777766663

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.81  E-value=3.5e-05  Score=71.34  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEec------CcCcccccC---------------
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCS------RCLVPWTSY---------------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s------~~l~h~~~d---------------   62 (294)
                      .+...|+|+.+++.|+++    |+ .+.+.+.|+..++..+++||+|++.      .++.+ .++               
T Consensus       145 ~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~-~p~~~~~~~~~~~~~~~~  223 (315)
T 1ixk_A          145 VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHK-NPERKWNRTMDDIKFCQG  223 (315)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC---------CCHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccC-ChhHhhcCCHHHHHHHHH
Confidence            466789999999999875    55 4667777887777667889999973      22311 111               


Q ss_pred             -hHHHHHHHHhccCCCcEEEEEcCC
Q 041513           63 -DGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        63 -~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                       ...+|.++.|+|||||++++++..
T Consensus       224 ~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          224 LQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCC
Confidence             147899999999999999998753

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.80  E-value=3.6e-06  Score=68.43  Aligned_cols=56  Identities=18%  Similarity=0.010  Sum_probs=45.4

Q ss_pred             CcEEEEccCCCCC--------CCCCcccEEEecCcCcccccCh-----------HHHHHHHHhccCCCcEEEEEcC
Q 041513           29 PAMVGLLSTYQLP--------YPSRSFDVAHCSRCLVPWTSYD-----------GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        29 ~~~~~v~d~~~LP--------fpd~sFD~V~~s~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+...+...++        +++++||+|++...+ |+....           ..+++++.|+|||||.++++.+
T Consensus        63 ~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           63 GVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             TEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEEcccccchhhhhhhccCCCCceeEEEECCCc-cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3556667877777        888999999998888 444443           5899999999999999999874

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.80  E-value=2.7e-05  Score=69.90  Aligned_cols=78  Identities=9%  Similarity=-0.007  Sum_probs=58.2

Q ss_pred             eeeccCCCcHHHHHHHHHcCCC---------cEEEEccCCCC-------CCCCCcccEEEecCcCc--------------
Q 041513            8 MSFAPLDVHEAQVQFALERGLP---------AMVGLLSTYQL-------PYPSRSFDVAHCSRCLV--------------   57 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~ergv~---------~~~~v~d~~~L-------Pfpd~sFD~V~~s~~l~--------------   57 (294)
                      ..+.+.|+++.|++.|+++-..         +.+...|...+       ++++++||+|+|.--+.              
T Consensus        61 ~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~  140 (260)
T 2ozv_A           61 AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAE  140 (260)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------
T ss_pred             CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHH
Confidence            4677889999999999885321         56777787766       47789999999973321              


Q ss_pred             --cc-ccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           58 --PW-TSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        58 --h~-~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                        |. ......+++++.++|||||+|++..+
T Consensus       141 a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          141 AHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             ------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence              11 12345789999999999999999765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.80  E-value=2.2e-05  Score=68.58  Aligned_cols=73  Identities=14%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             eeccCCCcHHHHHH----HHHcCCCcEEEEccCCC---CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQF----ALERGLPAMVGLLSTYQ---LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~----A~ergv~~~~~v~d~~~---LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|++.    |+++ ..+.+..+|...   +|+++++||+|++...   ..+....++.++.|+|||||+++
T Consensus       104 ~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~  179 (233)
T 2ipx_A          104 LVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA---QPDQTRIVALNAHTFLRNGGHFV  179 (233)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEE
Confidence            45677999776554    4443 356677777665   5677899999998644   11222346889999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      ++..
T Consensus       180 i~~~  183 (233)
T 2ipx_A          180 ISIK  183 (233)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.79  E-value=2e-05  Score=68.15  Aligned_cols=71  Identities=13%  Similarity=0.093  Sum_probs=56.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC------CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALER----GL------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      .+...|+|+.+++.|+++    +.      .+.+...+....+.+++.||+|++...+.+       ++.++.|+|||||
T Consensus       104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~-------~~~~~~~~LkpgG  176 (226)
T 1i1n_A          104 KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV-------VPQALIDQLKPGG  176 (226)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSS-------CCHHHHHTEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHH-------HHHHHHHhcCCCc
Confidence            567789999999999864    21      466777777766667889999999988743       3468999999999


Q ss_pred             EEEEEcCC
Q 041513           79 YWVVSGPP   86 (294)
Q Consensus        79 ~~vis~pp   86 (294)
                      +++++..+
T Consensus       177 ~lv~~~~~  184 (226)
T 1i1n_A          177 RLILPVGP  184 (226)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEEec
Confidence            99998764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.78  E-value=1.3e-05  Score=75.67  Aligned_cols=72  Identities=14%  Similarity=-0.002  Sum_probs=55.9

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+...|+ +.|++.|+++ ..+.+...|... |+|++  |+|++..++|||.++. ..+|+++.|+|||||++++...
T Consensus       229 ~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          229 NAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             EEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3455688 8888888654 246677777665 77765  9999999997776543 3689999999999999999764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.78  E-value=0.00014  Score=64.58  Aligned_cols=74  Identities=20%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CCCC--CCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LPYP--SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LPfp--d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      ..+...|+++.+++.|+++    ++.  +.+.++++.. ++..  .++||+|++...    ......++.++.|+|||||
T Consensus        89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG  164 (248)
T 3tfw_A           89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDAD----KPNNPHYLRWALRYSRPGT  164 (248)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSC----GGGHHHHHHHHHHTCCTTC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCc----hHHHHHHHHHHHHhcCCCe
Confidence            3567789999999999875    543  6677777544 4443  349999998643    2344479999999999999


Q ss_pred             EEEEEcC
Q 041513           79 YWVVSGP   85 (294)
Q Consensus        79 ~~vis~p   85 (294)
                      ++++...
T Consensus       165 ~lv~~~~  171 (248)
T 3tfw_A          165 LIIGDNV  171 (248)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9998653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.76  E-value=1.9e-05  Score=67.64  Aligned_cols=70  Identities=13%  Similarity=0.056  Sum_probs=53.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCC-CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+|+.+++.|+++    ++ .+.+...+... +++ +++||+|++..+++|..       .++.|+|||||++++
T Consensus       104 ~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~  175 (215)
T 2yxe_A          104 LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL-GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLM  175 (215)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG-CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEE
Confidence            466779999999999875    43 35566666533 333 67899999999996543       489999999999999


Q ss_pred             EcCC
Q 041513           83 SGPP   86 (294)
Q Consensus        83 s~pp   86 (294)
                      +.++
T Consensus       176 ~~~~  179 (215)
T 2yxe_A          176 PVGR  179 (215)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            8864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.76  E-value=1.3e-05  Score=76.03  Aligned_cols=73  Identities=19%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccc---cChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT---SYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~---~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+.+.|+| .|++.|+++    ++.  +.+..++.+.++++ ++||+|+|.... |+.   .....++.++.|+|||||+
T Consensus        88 ~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~-~~l~~e~~~~~~l~~~~~~LkpgG~  164 (376)
T 3r0q_C           88 KVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG-YFLLRESMFDSVISARDRWLKPTGV  164 (376)
T ss_dssp             EEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB-TTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh-hcccchHHHHHHHHHHHhhCCCCeE
Confidence            46677999 899998764    443  67788889999888 899999996644 332   4466799999999999999


Q ss_pred             EEEEc
Q 041513           80 WVVSG   84 (294)
Q Consensus        80 ~vis~   84 (294)
                      |+++.
T Consensus       165 li~~~  169 (376)
T 3r0q_C          165 MYPSH  169 (376)
T ss_dssp             EESSE
T ss_pred             EEEec
Confidence            98865

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.75  E-value=1.4e-05  Score=74.45  Aligned_cols=71  Identities=13%  Similarity=0.040  Sum_probs=56.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH--HHHHHHHhccCC---CcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG--LYLMEIDRVLRP---GGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~--~~L~Ei~RVLKP---GG~~vis   83 (294)
                      .+...|+ +.|++.|++.. .+.+...|... ++|+  ||+|++..++|||. ++.  .+|+++.|+|||   ||++++.
T Consensus       214 ~~~~~D~-~~~~~~a~~~~-~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          214 KCIVFDR-PQVVENLSGSN-NLTYVGGDMFT-SIPN--ADAVLLKYILHNWT-DKDCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             EEEEEEC-HHHHTTCCCBT-TEEEEECCTTT-CCCC--CSEEEEESCGGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             eEEEeeC-HHHHhhcccCC-CcEEEeccccC-CCCC--ccEEEeehhhccCC-HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            4667799 89999887642 36676777654 6664  99999999997774 444  799999999999   9999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       288 e~  289 (352)
T 1fp2_A          288 DM  289 (352)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.73  E-value=5.6e-06  Score=67.75  Aligned_cols=74  Identities=23%  Similarity=0.254  Sum_probs=55.4

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcEEEEccCCC-CCC-C--CCcccEEEecCcCcccccChHHHHHHHH--hccCCCcE
Q 041513           10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQ-LPY-P--SRSFDVAHCSRCLVPWTSYDGLYLMEID--RVLRPGGY   79 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~-LPf-p--d~sFD~V~~s~~l~h~~~d~~~~L~Ei~--RVLKPGG~   79 (294)
                      +.+.|+|+.|++.|+++    ++.+.+...|... ++. +  +++||+|++...+ |  ......++++.  |+|||||.
T Consensus        66 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~-~--~~~~~~~~~~~~~~~L~~gG~  142 (171)
T 1ws6_A           66 AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY-A--MDLAALFGELLASGLVEAGGL  142 (171)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT-T--SCTTHHHHHHHHHTCEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC-c--hhHHHHHHHHHhhcccCCCcE
Confidence            67789999999999874    3456777677554 332 1  3489999999777 3  34447778887  99999999


Q ss_pred             EEEEcCC
Q 041513           80 WVVSGPP   86 (294)
Q Consensus        80 ~vis~pp   86 (294)
                      ++++.++
T Consensus       143 ~~~~~~~  149 (171)
T 1ws6_A          143 YVLQHPK  149 (171)
T ss_dssp             EEEEEET
T ss_pred             EEEEeCC
Confidence            9998754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.72  E-value=5.8e-05  Score=65.71  Aligned_cols=71  Identities=15%  Similarity=0.061  Sum_probs=55.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++    ++  .+.+...+.....++++.||+|++..      .++..++.++.++|||||++++
T Consensus       115 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~  188 (248)
T 2yvl_A          115 EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV------REPWHYLEKVHKSLMEGAPVGF  188 (248)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS------SCGGGGHHHHHHHBCTTCEEEE
T ss_pred             EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC------cCHHHHHHHHHHHcCCCCEEEE
Confidence            566789999999999875    43  35566667666444778999999731      2455899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       189 ~~~  191 (248)
T 2yvl_A          189 LLP  191 (248)
T ss_dssp             EES
T ss_pred             EeC
Confidence            886

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.72  E-value=1.8e-05  Score=74.58  Aligned_cols=71  Identities=15%  Similarity=0.033  Sum_probs=55.8

Q ss_pred             eccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEcC
Q 041513           10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +...|+ +.|++.|+++ ..+.+...|... |+|++  |+|++..++|||.++ ...+|+++.|+|||||+|++...
T Consensus       228 ~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          228 GVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             EEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             EEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            445688 7888887654 356777778766 88865  999999999777643 34799999999999999999764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.71  E-value=1.2e-05  Score=66.79  Aligned_cols=75  Identities=11%  Similarity=-0.023  Sum_probs=56.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHH--HhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEI--DRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei--~RVLKP   76 (294)
                      .+.+.|+|+.|++.|+++    ++  .+.+..+|...    +++++++||+|++...+ + .......+.++  .|+|||
T Consensus        69 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~-~-~~~~~~~~~~l~~~~~L~~  146 (187)
T 2fhp_A           69 KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-A-KQEIVSQLEKMLERQLLTN  146 (187)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-G-GCCHHHHHHHHHHTTCEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCC-C-chhHHHHHHHHHHhcccCC
Confidence            567789999999999874    33  35676777544    23447899999998775 3 23455778888  999999


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      ||.+++..+
T Consensus       147 gG~l~~~~~  155 (187)
T 2fhp_A          147 EAVIVCETD  155 (187)
T ss_dssp             EEEEEEEEE
T ss_pred             CCEEEEEeC
Confidence            999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.70  E-value=2.7e-05  Score=67.67  Aligned_cols=69  Identities=13%  Similarity=0.110  Sum_probs=54.3

Q ss_pred             eeccCCCcHHHHHHHHHcC----------CCcEEEEccCCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERG----------LPAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------v~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      .+...|+++++++.|+++.          ..+.+...|... ++++ +.||+|++..+++|.       +.++.++||||
T Consensus       116 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~-------~~~~~~~Lkpg  187 (227)
T 1r18_A          116 RIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDT-------PTELINQLASG  187 (227)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSSC-------CHHHHHTEEEE
T ss_pred             EEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHHH-------HHHHHHHhcCC
Confidence            5677899999999998752          245666677655 5665 889999999988543       37899999999


Q ss_pred             cEEEEEcC
Q 041513           78 GYWVVSGP   85 (294)
Q Consensus        78 G~~vis~p   85 (294)
                      |++++...
T Consensus       188 G~lvi~~~  195 (227)
T 1r18_A          188 GRLIVPVG  195 (227)
T ss_dssp             EEEEEEES
T ss_pred             CEEEEEEe
Confidence            99999875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.70  E-value=3.6e-05  Score=71.52  Aligned_cols=73  Identities=16%  Similarity=0.106  Sum_probs=56.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcc--cccChHHHHHHHHhccCCCcEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVP--WTSYDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h--~~~d~~~~L~Ei~RVLKPGG~~   80 (294)
                      .+.+.|+| .|++.|+++    ++  .+.+..++.+.+++++++||+|+|....++  .......++.++.|+|||||++
T Consensus        63 ~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  141 (328)
T 1g6q_1           63 HVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             EEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEE
Confidence            45667888 588888764    44  366777889999999899999998754322  3345567999999999999999


Q ss_pred             EE
Q 041513           81 VV   82 (294)
Q Consensus        81 vi   82 (294)
                      +.
T Consensus       142 i~  143 (328)
T 1g6q_1          142 FP  143 (328)
T ss_dssp             ES
T ss_pred             EE
Confidence            84

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.70  E-value=3.5e-05  Score=70.96  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=55.4

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCCCCC--CCCcccEEEecCcCcccccCh----HHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQLPY--PSRSFDVAHCSRCLVPWTSYD----GLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~LPf--pd~sFD~V~~s~~l~h~~~d~----~~~L~Ei~RV   73 (294)
                      .+...|+++.+++.|+++.         ..+.+.+.|...++.  ++++||+|++.... ++....    ..+++++.|+
T Consensus       121 ~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~-~~~~~~~l~~~~~l~~~~~~  199 (304)
T 3bwc_A          121 HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTD-PAGPASKLFGEAFYKDVLRI  199 (304)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC----------CCHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCC-ccccchhhhHHHHHHHHHHh
Confidence            5667799999999998753         246677777666554  47899999997665 332221    4799999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||.|++...
T Consensus       200 LkpgG~lv~~~~  211 (304)
T 3bwc_A          200 LKPDGICCNQGE  211 (304)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCcEEEEecC
Confidence            999999999764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.69  E-value=8.2e-05  Score=70.27  Aligned_cols=75  Identities=15%  Similarity=0.027  Sum_probs=57.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE-E
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY-W   80 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~-~   80 (294)
                      .+...|+|+.|++.|+++    |+ .+.+..+|... +|. .+++||+|++...+++. . ...++.++.|+|||||+ +
T Consensus       197 ~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-~-~~~~l~~~~~~LkpgG~~~  274 (373)
T 2qm3_A          197 RIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-A-IRAFVGRGIATLKGPRCAG  274 (373)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-H-HHHHHHHHHHTBCSTTCEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-H-HHHHHHHHHHHcccCCeEE
Confidence            566789999999999875    55 56777788777 775 46799999998766332 2 45899999999999994 4


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++..
T Consensus       275 ~~~~~  279 (373)
T 2qm3_A          275 YFGIT  279 (373)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66553

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.68  E-value=8.8e-06  Score=67.62  Aligned_cols=75  Identities=5%  Similarity=-0.047  Sum_probs=55.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHH--hccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID--RVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~--RVLKPGG~   79 (294)
                      .+.+.|+|+.|++.|+++    ++.  +.+...|... ++..++.||+|++...+ +. ......+.++.  |+|||||.
T Consensus        56 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~-~~-~~~~~~~~~l~~~~~L~~gG~  133 (177)
T 2esr_A           56 AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY-AK-ETIVATIEALAAKNLLSEQVM  133 (177)
T ss_dssp             EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS-HH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC-Cc-chHHHHHHHHHhCCCcCCCcE
Confidence            567789999999999874    332  5666677554 45556789999998766 32 23346777777  99999999


Q ss_pred             EEEEcC
Q 041513           80 WVVSGP   85 (294)
Q Consensus        80 ~vis~p   85 (294)
                      +++..+
T Consensus       134 l~~~~~  139 (177)
T 2esr_A          134 VVCETD  139 (177)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.68  E-value=8.9e-06  Score=68.74  Aligned_cols=77  Identities=10%  Similarity=-0.032  Sum_probs=42.0

Q ss_pred             eeeccCCCcHHHHHHHHHcC----CCcEEEEccCCCCCCCC-----CcccEEEecCcCcccc------cC----------
Q 041513            8 MSFAPLDVHEAQVQFALERG----LPAMVGLLSTYQLPYPS-----RSFDVAHCSRCLVPWT------SY----------   62 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~~LPfpd-----~sFD~V~~s~~l~h~~------~d----------   62 (294)
                      ..+.+.|+|+.|++.|+++.    ..+.+.++|... ++++     ++||+|+|...+++..      ..          
T Consensus        55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~  133 (215)
T 4dzr_A           55 VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLAL  133 (215)
T ss_dssp             EEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC--------------------
T ss_pred             CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccc
Confidence            36778899999999998753    234455556555 6776     9999999965442211      10          


Q ss_pred             ---------hHHHHHHHHhccCCCcE-EEEEcC
Q 041513           63 ---------DGLYLMEIDRVLRPGGY-WVVSGP   85 (294)
Q Consensus        63 ---------~~~~L~Ei~RVLKPGG~-~vis~p   85 (294)
                               ...+++++.|+|||||+ +++..+
T Consensus       134 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          134 DGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             ----CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             cCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence                     04788999999999999 555443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.68  E-value=3.8e-05  Score=67.82  Aligned_cols=79  Identities=15%  Similarity=0.066  Sum_probs=55.9

Q ss_pred             eeeeccCCCcHHHHHHHHHc-------CC--C-------------------------cE-------------EEEccCCC
Q 041513            7 TMSFAPLDVHEAQVQFALER-------GL--P-------------------------AM-------------VGLLSTYQ   39 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~er-------gv--~-------------------------~~-------------~~v~d~~~   39 (294)
                      ...+.+.|+|+.|++.|+++       ++  .                         +.             +.+.|...
T Consensus        77 ~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~  156 (250)
T 1o9g_A           77 LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFD  156 (250)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeeccccc
Confidence            34678899999999999853       11  1                         33             66677554


Q ss_pred             CCC-----CCCcccEEEecCcCccccc--------ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           40 LPY-----PSRSFDVAHCSRCLVPWTS--------YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        40 LPf-----pd~sFD~V~~s~~l~h~~~--------d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ...     +.+.||+|+|...+++...        ....+++++.|+|||||+++++.+
T Consensus       157 ~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          157 PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            221     4458999999866543322        223799999999999999999654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.67  E-value=4.6e-05  Score=69.07  Aligned_cols=70  Identities=7%  Similarity=0.042  Sum_probs=56.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    ++.  +.+.++|+..++. +++||+|++...     .....++.++.|+|||||+|++
T Consensus       150 ~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~  223 (278)
T 2frn_A          150 KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEE
Confidence            467789999999999874    453  5677788888776 789999998533     2334799999999999999999


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       224 ~~  225 (278)
T 2frn_A          224 HN  225 (278)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.67  E-value=6.7e-05  Score=70.08  Aligned_cols=77  Identities=18%  Similarity=0.028  Sum_probs=59.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCccccc-------ChHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-------YDGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-------d~~~~L~Ei~RVLKP   76 (294)
                      .+.+.|+++.|++.|+++    |+ .+.+.+.|+..++.+.+.||+|+|.--+.....       ....+++++.|+|||
T Consensus       230 ~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp  309 (354)
T 3tma_A          230 PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP  309 (354)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC
Confidence            466789999999999875    45 477888999999988889999999543311111       124689999999999


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      ||++++..+
T Consensus       310 gG~l~i~t~  318 (354)
T 3tma_A          310 GGRVALLTL  318 (354)
T ss_dssp             TCEEEEEES
T ss_pred             CcEEEEEeC
Confidence            999999875

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.67  E-value=2.5e-05  Score=67.68  Aligned_cols=74  Identities=14%  Similarity=0.199  Sum_probs=53.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CCCCC-----CcccEEEecCcCcccccChHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LPYPS-----RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LPfpd-----~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP   76 (294)
                      .+...|+++.|++.|+++    ++.  +.+.++++.. ++...     ++||+|++....+++. +...++.++ |+|||
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~-~~Lkp  162 (221)
T 3u81_A           85 RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYL-PDTLLLEKC-GLLRK  162 (221)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHH-HHHHHHHHT-TCCCT
T ss_pred             EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccch-HHHHHHHhc-cccCC
Confidence            466779999999999874    442  6676777433 44322     7999999987774443 333577777 99999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||+|++..
T Consensus       163 gG~lv~~~  170 (221)
T 3u81_A          163 GTVLLADN  170 (221)
T ss_dssp             TCEEEESC
T ss_pred             CeEEEEeC
Confidence            99998865

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.66  E-value=5.1e-05  Score=67.00  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             eeccCCCcHHHHHHHHHc------------CC-CcEEEEccCCC-CC--CCCCcccEEEecCcCcccccC--------hH
Q 041513            9 SFAPLDVHEAQVQFALER------------GL-PAMVGLLSTYQ-LP--YPSRSFDVAHCSRCLVPWTSY--------DG   64 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er------------gv-~~~~~v~d~~~-LP--fpd~sFD~V~~s~~l~h~~~d--------~~   64 (294)
                      .+.+.|+|+.|++.|+++            ++ ++.+..+|+.. ++  |++++||.|+..+.- .|...        ..
T Consensus        75 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~-p~~k~~~~~~r~~~~  153 (246)
T 2vdv_E           75 LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPD-PHFKQRKHKARIITN  153 (246)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCC-CC------CSSCCCH
T ss_pred             CEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCC-cccccchhHHhhccH
Confidence            567789999999999763            54 46677778665 77  889999999854322 12100        03


Q ss_pred             HHHHHHHhccCCCcEEEEEcC
Q 041513           65 LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .++.++.|+|||||+|++...
T Consensus       154 ~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          154 TLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             HHHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHHHcCCCCEEEEEec
Confidence            799999999999999999653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.65  E-value=2.3e-05  Score=68.91  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCC-CC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQ-LP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~-LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+...|++++|++.|+++    ++.   +.+.++++.. ++ +++++||+|++....    .+...++.++.|+|||||+
T Consensus        83 ~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~  158 (221)
T 3dr5_A           83 TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP----MDLKALVDAAWPLLRRGGA  158 (221)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCT----TTHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcH----HHHHHHHHHHHHHcCCCcE
Confidence            466779999999999874    444   5666666443 33 447899999987543    2344799999999999999


Q ss_pred             EEEEc
Q 041513           80 WVVSG   84 (294)
Q Consensus        80 ~vis~   84 (294)
                      +++..
T Consensus       159 lv~dn  163 (221)
T 3dr5_A          159 LVLAD  163 (221)
T ss_dssp             EEETT
T ss_pred             EEEeC
Confidence            99854

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.65  E-value=1.6e-05  Score=70.55  Aligned_cols=72  Identities=8%  Similarity=0.025  Sum_probs=55.3

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCC---CCCCC-cccEEEecCcCcccccChHHHHHHHHh-ccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQL---PYPSR-SFDVAHCSRCLVPWTSYDGLYLMEIDR-VLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~L---Pfpd~-sFD~V~~s~~l~h~~~d~~~~L~Ei~R-VLKPGG~~vis   83 (294)
                      .+.+.|+|++|++.|+.....+.+.++|...+   ++.++ +||+|++...  |  .+...+|.|+.| +|||||+|++.
T Consensus       111 ~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          111 QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS--C--SSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc--h--HhHHHHHHHHHHhhCCCCCEEEEE
Confidence            56677899999888875444577777887763   65444 7999998654  3  255689999998 99999999996


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       187 d  187 (236)
T 2bm8_A          187 D  187 (236)
T ss_dssp             S
T ss_pred             e
Confidence            5

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.65  E-value=1.9e-05  Score=68.25  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             eeccCCCcHHHHHHHHHc----C-----C-CcEEEEccCCCCC----CCCCcccEEEecCcCcccccChHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALER----G-----L-PAMVGLLSTYQLP----YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----g-----v-~~~~~v~d~~~LP----fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVL   74 (294)
                      .+...|+++.+++.|+++    +     . .+.+...|....+    ++++.||+|++...++|       ++.++.++|
T Consensus       111 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~-------~~~~~~~~L  183 (227)
T 2pbf_A          111 YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASE-------LPEILVDLL  183 (227)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSS-------CCHHHHHHE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHH-------HHHHHHHhc
Confidence            567789999999999875    3     2 4667777776665    66789999999988843       358899999


Q ss_pred             CCCcEEEEEcCC
Q 041513           75 RPGGYWVVSGPP   86 (294)
Q Consensus        75 KPGG~~vis~pp   86 (294)
                      ||||++++..++
T Consensus       184 kpgG~lv~~~~~  195 (227)
T 2pbf_A          184 AENGKLIIPIEE  195 (227)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CCCcEEEEEEcc
Confidence            999999998753

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.62  E-value=6.1e-05  Score=70.12  Aligned_cols=73  Identities=23%  Similarity=0.086  Sum_probs=50.9

Q ss_pred             eeccCCCcHHHHHHHHH--cCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALE--RGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~e--rgv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+...|+++ ++..++.  .+.  .+.+...|.. .++|  +||+|++..++|||.+.. ..+|+++.|+|||||+|++.
T Consensus       210 ~~~~~D~~~-~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~  285 (348)
T 3lst_A          210 QGVLLDRAE-VVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVI  285 (348)
T ss_dssp             EEEEEECHH-HHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEEEecCHH-HhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            345567754 4431111  122  3667777764 4555  899999999997776442 48999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       286 e~  287 (348)
T 3lst_A          286 DA  287 (348)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.59  E-value=0.00013  Score=65.52  Aligned_cols=70  Identities=14%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+|+.+++.|+++    ++  .+.+...|.... +++++||+|++..      .++..++.++.++|||||.+++
T Consensus       139 ~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~  211 (277)
T 1o54_A          139 KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV------PDPWNYIDKCWEALKGGGRFAT  211 (277)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEE
Confidence            566779999999999875    44  355666676655 7788999999732      3455899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       212 ~~~  214 (277)
T 1o54_A          212 VCP  214 (277)
T ss_dssp             EES
T ss_pred             EeC
Confidence            886

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.59  E-value=0.00018  Score=69.75  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=57.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCCCcccEEEe------cCcCcccccCh------------
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPSRSFDVAHC------SRCLVPWTSYD------------   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd~sFD~V~~------s~~l~h~~~d~------------   63 (294)
                      .+...|+|+.+++.++++    |+ .+.+.+.|...++  +++++||+|++      ..++ +-.++.            
T Consensus       286 ~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~-~~~pd~~~~~~~~~~~~l  364 (450)
T 2yxl_A          286 KIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTI-GKNPELRWRLREDKINEM  364 (450)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGT-TTSTTHHHHCCTTSHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeee-ccChhhhhhCCHHHHHHH
Confidence            466779999999999875    66 4666677877776  67789999995      2233 222221            


Q ss_pred             ----HHHHHHHHhccCCCcEEEEEcCC
Q 041513           64 ----GLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        64 ----~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                          ..+|.++.++|||||++++++-.
T Consensus       365 ~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          365 SQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence                46899999999999999998753

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.59  E-value=7.8e-05  Score=68.94  Aligned_cols=71  Identities=14%  Similarity=0.001  Sum_probs=50.6

Q ss_pred             eeccCCCcHHHHHHHHHcC----------------CCcEEEEccCCCC--CCCCCcccEEEecCcCcccccChHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG----------------LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYDGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------------v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei   70 (294)
                      .+...|+++.+++.|+++.                ..+.+...|...+  ++++++||+|++...      ++..++.++
T Consensus       132 ~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~  205 (336)
T 2b25_A          132 RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML------NPHVTLPVF  205 (336)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSS------STTTTHHHH
T ss_pred             eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCC------CHHHHHHHH
Confidence            4566799999999998741                2466777787666  678889999998532      223589999


Q ss_pred             HhccCCCcEEEEEcC
Q 041513           71 DRVLRPGGYWVVSGP   85 (294)
Q Consensus        71 ~RVLKPGG~~vis~p   85 (294)
                      .|+|||||.|++..+
T Consensus       206 ~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          206 YPHLKHGGVCAVYVV  220 (336)
T ss_dssp             GGGEEEEEEEEEEES
T ss_pred             HHhcCCCcEEEEEeC
Confidence            999999999998775

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.55  E-value=3e-05  Score=69.34  Aligned_cols=72  Identities=17%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+++.+++.|+++    ++.+.+...+... ++++++||+|++.... |.   ...++.++.|+|||||++++++
T Consensus       144 ~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~-~~---~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          144 KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA-EL---HAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH-HH---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcH-HH---HHHHHHHHHHHcCCCCEEEEEe
Confidence            567789999999999874    4455666666443 2567899999987655 32   3479999999999999999987


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      .
T Consensus       219 ~  219 (254)
T 2nxc_A          219 I  219 (254)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.53  E-value=5.5e-05  Score=66.15  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCc-ccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRS-FDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~s-FD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++    ++ .+.+...+. ..+++++. ||+|++..++.++.       .++.++|||||++++
T Consensus       116 ~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi  187 (235)
T 1jg1_A          116 DVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLII  187 (235)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEE
Confidence            466779999999999875    33 355656665 55666655 99999999885443       378999999999999


Q ss_pred             EcCC
Q 041513           83 SGPP   86 (294)
Q Consensus        83 s~pp   86 (294)
                      +.++
T Consensus       188 ~~~~  191 (235)
T 1jg1_A          188 PVGS  191 (235)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            8864

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.51  E-value=6.1e-05  Score=66.05  Aligned_cols=73  Identities=8%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-CC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ-LP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      ..+...|+++.|++.|+++    ++  .+.+..+++.. ++ ..+++||+|++....    .....+++++.|+|||||+
T Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~----~~~~~~l~~~~~~LkpgG~  171 (232)
T 3ntv_A           96 IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAK----AQSKKFFEIYTPLLKHQGL  171 (232)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETTS----SSHHHHHHHHGGGEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCcH----HHHHHHHHHHHHhcCCCeE
Confidence            3566789999999999874    44  46777777644 45 457899999976433    3445799999999999999


Q ss_pred             EEEEc
Q 041513           80 WVVSG   84 (294)
Q Consensus        80 ~vis~   84 (294)
                      |++..
T Consensus       172 lv~d~  176 (232)
T 3ntv_A          172 VITDN  176 (232)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            98854

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.49  E-value=6.6e-05  Score=65.34  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-CCCC--CCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ-LPYP--SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-LPfp--d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      ..+...|+++.+++.|+++    ++  .+.+...+... ++..  +++||+|++....    .+...++.++.++|||||
T Consensus        79 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG  154 (233)
T 2gpy_A           79 ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAK----GQYRRFFDMYSPMVRPGG  154 (233)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG----SCHHHHHHHHGGGEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCH----HHHHHHHHHHHHHcCCCe
Confidence            3567789999999999876    44  36666666554 3544  6889999987665    255689999999999999


Q ss_pred             EEEEEc
Q 041513           79 YWVVSG   84 (294)
Q Consensus        79 ~~vis~   84 (294)
                      ++++..
T Consensus       155 ~lv~~~  160 (233)
T 2gpy_A          155 LILSDN  160 (233)
T ss_dssp             EEEEET
T ss_pred             EEEEEc
Confidence            999974

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.49  E-value=5.6e-05  Score=70.77  Aligned_cols=74  Identities=12%  Similarity=0.021  Sum_probs=56.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|.|+ |++.|+++    ++  .+.+..++.+.++++ ++||+|++...++|+... ....+.++.|+|||||.++
T Consensus        75 ~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li  152 (348)
T 2y1w_A           75 KIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF  152 (348)
T ss_dssp             EEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence            455668885 88888764    44  366777888888876 579999999888776533 3478889999999999998


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      ++.
T Consensus       153 ~~~  155 (348)
T 2y1w_A          153 PTI  155 (348)
T ss_dssp             SCE
T ss_pred             Eec
Confidence            653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.49  E-value=0.00012  Score=65.04  Aligned_cols=112  Identities=16%  Similarity=0.081  Sum_probs=62.7

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEE-ccCCCC---CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGL-LSTYQL---PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v-~d~~~L---Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|++|++.|+++........ .+...+   .++...||.+.+..++.+.    ..+|.|+.|+|||||+|++..
T Consensus        62 ~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A           62 LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL----DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH----HHHHHHHHHhccCCCEEEEEE
Confidence            56778999999999987653322211 011111   1111123444444444332    479999999999999999975


Q ss_pred             CCCCccc----cCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513           85 PPISWKT----SYRGWERDAKDLQKEQISLENLATRLCWKKIAE  124 (294)
Q Consensus        85 pp~~~~~----~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~  124 (294)
                      .|..-..    ...|..++........+.+.++++..+|+....
T Consensus       138 ~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~  181 (232)
T 3opn_A          138 KPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL  181 (232)
T ss_dssp             CHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             CcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence            4322110    001222222222335567777888888876653

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.49  E-value=1.8e-05  Score=69.57  Aligned_cols=74  Identities=9%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+|+.|+++|+++    |+...+.+.+.... .+.+.||+|++..++||. ++...++..+.+.|||||.||--.
T Consensus        75 ~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A           75 IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence            566779999999999875    55534444554333 567889999999999555 666678889999999999887643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.47  E-value=0.00012  Score=63.32  Aligned_cols=73  Identities=10%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCC---CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLP---YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LP---fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.++++.   ..+.+...|.....   ..+++||+|++....   ......++.++.|+|||||++++
T Consensus       100 ~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~  176 (227)
T 1g8a_A          100 KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ---PTQAKILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS---TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCCC---HhHHHHHHHHHHHhcCCCCEEEE
Confidence            4566799999999887642   24667777766521   124689999976541   22222459999999999999999


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      +.
T Consensus       177 ~~  178 (227)
T 1g8a_A          177 AV  178 (227)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.42  E-value=6.9e-05  Score=64.18  Aligned_cols=71  Identities=13%  Similarity=0.090  Sum_probs=53.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+|+.|++.|+++    ++  .+.+..+++.. ++..++ ||+|++...    ..+...+++++.|+|||||+++
T Consensus        83 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~----~~~~~~~l~~~~~~LkpgG~lv  157 (210)
T 3c3p_A           83 RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD----VFNGADVLERMNRCLAKNALLI  157 (210)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT----TSCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC----hhhhHHHHHHHHHhcCCCeEEE
Confidence            566779999999999864    33  35666677543 465556 999998743    2345589999999999999999


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       158 ~~~  160 (210)
T 3c3p_A          158 AVN  160 (210)
T ss_dssp             EES
T ss_pred             EEC
Confidence            854

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.40  E-value=0.0003  Score=63.70  Aligned_cols=76  Identities=11%  Similarity=-0.062  Sum_probs=54.0

Q ss_pred             eeccCCC-cHHHHHHHHHcC---------C------CcEEEEccCCCC--CC----CCCcccEEEecCcCcccccChHHH
Q 041513            9 SFAPLDV-HEAQVQFALERG---------L------PAMVGLLSTYQL--PY----PSRSFDVAHCSRCLVPWTSYDGLY   66 (294)
Q Consensus         9 s~ap~D~-S~~mlq~A~erg---------v------~~~~~v~d~~~L--Pf----pd~sFD~V~~s~~l~h~~~d~~~~   66 (294)
                      .+...|+ |+.|++.|+++.         +      .+.+...+....  .+    +++.||+|+++.+++| ..+...+
T Consensus       104 ~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~~~~~l  182 (281)
T 3bzb_A          104 QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQAHDAL  182 (281)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GGGHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hHHHHHH
Confidence            4667899 899999997742         1      233433332111  12    4688999999999954 5566689


Q ss_pred             HHHHHhccC---C--CcEEEEEcC
Q 041513           67 LMEIDRVLR---P--GGYWVVSGP   85 (294)
Q Consensus        67 L~Ei~RVLK---P--GG~~vis~p   85 (294)
                      ++++.|+||   |  ||.++++..
T Consensus       183 l~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          183 LRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             HHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             HHHHHHHhcccCCCCCCEEEEEEE
Confidence            999999999   9  998877653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.40  E-value=0.00017  Score=61.96  Aligned_cols=73  Identities=25%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCC-CCCC-CC----CcccEEEecCcCcccccChHHHHHHHHhccC
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTY-QLPY-PS----RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLR   75 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~-~LPf-pd----~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLK   75 (294)
                      ..+...|+++.|++.|+++    ++.  +.+.++++. .++. +.    ++||+|++...    ..+...++.++.|+||
T Consensus        90 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~----~~~~~~~l~~~~~~L~  165 (225)
T 3tr6_A           90 GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD----KANTDLYYEESLKLLR  165 (225)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC----HHHHHHHHHHHHHhcC
Confidence            3567789999999999875    443  667677653 3332 21    78999996543    3345579999999999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||+|++..
T Consensus       166 pgG~lv~~~  174 (225)
T 3tr6_A          166 EGGLIAVDN  174 (225)
T ss_dssp             EEEEEEEEC
T ss_pred             CCcEEEEeC
Confidence            999999865

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.40  E-value=6.5e-05  Score=70.07  Aligned_cols=70  Identities=13%  Similarity=0.060  Sum_probs=53.6

Q ss_pred             eccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH--HHHHHHHhccCC---CcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG--LYLMEIDRVLRP---GGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~--~~L~Ei~RVLKP---GG~~vis~   84 (294)
                      +...|+ +.|++.|++. -.+.+...|... |++  .||+|++..++|||. ++.  .+|+++.|+|||   ||++++..
T Consensus       220 ~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          220 CTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN-DEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             EEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC-HHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             EEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC-HHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            445588 5888877653 236666677665 776  399999999996664 444  899999999999   99999976


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      .
T Consensus       294 ~  294 (358)
T 1zg3_A          294 I  294 (358)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.38  E-value=0.00024  Score=69.25  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=53.2

Q ss_pred             eeccCCCcHHHHHHH-------HHc----C--C-CcEEEEccCCCC--CC--CCCcccEEEecCcCcccccChHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFA-------LER----G--L-PAMVGLLSTYQL--PY--PSRSFDVAHCSRCLVPWTSYDGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A-------~er----g--v-~~~~~v~d~~~L--Pf--pd~sFD~V~~s~~l~h~~~d~~~~L~Ei   70 (294)
                      .+.+.|+++.|++.|       +++    |  . .+.+..++....  +|  ..++||+|+++.++  +..+...+|+|+
T Consensus       268 ~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el  345 (433)
T 1u2z_A          268 LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKI  345 (433)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHH
Confidence            366778888888777       553    4  2 355555543322  23  35789999987666  234566789999


Q ss_pred             HhccCCCcEEEEEcC
Q 041513           71 DRVLRPGGYWVVSGP   85 (294)
Q Consensus        71 ~RVLKPGG~~vis~p   85 (294)
                      .|+|||||++++..+
T Consensus       346 ~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          346 LQTAKVGCKIISLKS  360 (433)
T ss_dssp             HTTCCTTCEEEESSC
T ss_pred             HHhCCCCeEEEEeec
Confidence            999999999999753

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.35  E-value=0.00014  Score=65.55  Aligned_cols=79  Identities=9%  Similarity=-0.012  Sum_probs=57.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCC----CCCcccEEEec------CcCc-----------ccccC
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPY----PSRSFDVAHCS------RCLV-----------PWTSY   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPf----pd~sFD~V~~s------~~l~-----------h~~~d   62 (294)
                      .+...|+|+.+++.++++    |+ .+.+...|+..++.    +++.||+|++.      .++.           +....
T Consensus       110 ~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~  189 (274)
T 3ajd_A          110 TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLR  189 (274)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHH
Confidence            466789999999998875    55 46666777766655    36789999975      1221           11234


Q ss_pred             hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513           63 DGLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        63 ~~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                      ...++.++.++|||||++++++..+
T Consensus       190 ~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          190 QKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEECCC
Confidence            4679999999999999999987533

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.34  E-value=0.00035  Score=65.56  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCCC--CCCCCcccEEEecCcCcccc--cC--hHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWT--SY--DGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~--~d--~~~~L~Ei~RV   73 (294)
                      .+...|+|+.|++.|+++-         ..+.+.++|+...  .+++++||+|++.... ++.  ..  ...+++++.|+
T Consensus       146 ~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~-p~~~~~~l~~~~~l~~~~~~  224 (334)
T 1xj5_A          146 QIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSD-PIGPAKELFEKPFFQSVARA  224 (334)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCC-TTSGGGGGGSHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCC-ccCcchhhhHHHHHHHHHHh
Confidence            5667799999999998752         2466667775442  2457899999986542 221  11  24799999999


Q ss_pred             cCCCcEEEEEc
Q 041513           74 LRPGGYWVVSG   84 (294)
Q Consensus        74 LKPGG~~vis~   84 (294)
                      |||||.|++..
T Consensus       225 LkpgG~lv~~~  235 (334)
T 1xj5_A          225 LRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cCCCcEEEEec
Confidence            99999999975

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.31  E-value=0.00026  Score=68.17  Aligned_cols=76  Identities=18%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC--CCCCcccEEEe----c--CcCcccccCh-------------
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP--YPSRSFDVAHC----S--RCLVPWTSYD-------------   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP--fpd~sFD~V~~----s--~~l~h~~~d~-------------   63 (294)
                      .+...|+|+.+++.++++    |+.+.+...|...++  +++++||+|++    +  .++ +-.++.             
T Consensus       272 ~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~-~~~p~~~~~~~~~~~~~l~  350 (429)
T 1sqg_A          272 QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVI-RRHPDIKWLRRDRDIPELA  350 (429)
T ss_dssp             EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGT-TTCTTHHHHCCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCCccccc-CCCcchhhcCCHHHHHHHH
Confidence            466779999999988765    667777778887776  77789999995    2  222 212221             


Q ss_pred             ---HHHHHHHHhccCCCcEEEEEcC
Q 041513           64 ---GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 ---~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                         ..+|.++.++|||||++++++-
T Consensus       351 ~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          351 QLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence               3689999999999999999874

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.28  E-value=0.00027  Score=65.71  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=51.7

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccCh----HHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYD----GLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~----~~~L~Ei~RVL   74 (294)
                      .+...|+++.+++.|+++-         ..+.+...|+.. ++..+++||+|++...- |+....    ..+++++.|+|
T Consensus       134 ~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~l~t~~~l~~~~~~L  212 (314)
T 2b2c_A          134 KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSD-PVGPAESLFGQSYYELLRDAL  212 (314)
T ss_dssp             EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC--------------HHHHHHHHE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCC-CCCcchhhhHHHHHHHHHhhc
Confidence            5667799999999999852         134566666443 44467899999986543 433221    47899999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||.+++..
T Consensus       213 kpgG~lv~~~  222 (314)
T 2b2c_A          213 KEDGILSSQG  222 (314)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCCeEEEEEC
Confidence            9999999976

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.27  E-value=0.0003  Score=62.91  Aligned_cols=73  Identities=11%  Similarity=-0.017  Sum_probs=48.8

Q ss_pred             eeccCCCcHHHH----HHHHHcCCCcEEEEccCCCCC---CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQV----QFALERGLPAMVGLLSTYQLP---YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~ml----q~A~ergv~~~~~v~d~~~LP---fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+.|+    +.|+++ .++.+.++|+....   ...++||+|++....   .+....++..+.|+|||||+|+
T Consensus       103 ~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lv  178 (232)
T 3id6_C          103 KAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDML  178 (232)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEE
Confidence            466779999885    445554 35667777765432   124689999988654   2223234456667999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      ++..
T Consensus       179 isik  182 (232)
T 3id6_C          179 LVIK  182 (232)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9863

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.26  E-value=3.5e-05  Score=68.01  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCC---CCC---CCcccEEEecCcCcccc--------------c
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQL---PYP---SRSFDVAHCSRCLVPWT--------------S   61 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~L---Pfp---d~sFD~V~~s~~l~h~~--------------~   61 (294)
                      ..+.+.|+|+.|++.|+++    ++.  +.+..+|+...   +++   +++||+|+|.-.+++..              .
T Consensus        90 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~  169 (254)
T 2h00_A           90 WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPP  169 (254)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC------------------
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccC
Confidence            3577789999999999875    443  67777776542   565   37899999986553322              0


Q ss_pred             ChHHHHHHHHhccCCCcEEEEE
Q 041513           62 YDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        62 d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      ....++.++.|+|||||.+.+.
T Consensus       170 ~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          170 PSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             -------CTTTTHHHHTHHHHH
T ss_pred             CHHHHhhhHHHHEecCCEEEEE
Confidence            1124578999999999988765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.26  E-value=0.00039  Score=68.39  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=55.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCC-CCCcccEEEe----cC--cCc-------cccc--------
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPY-PSRSFDVAHC----SR--CLV-------PWTS--------   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPf-pd~sFD~V~~----s~--~l~-------h~~~--------   61 (294)
                      .+...|+|+.+++.++++    |+ .+.+.+.|+..++. .+++||.|++    +.  ++.       +|..        
T Consensus       144 ~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~  223 (479)
T 2frx_A          144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAA  223 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHH
Confidence            466789999999999875    55 45666778877764 5688999997    21  221       1111        


Q ss_pred             ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           62 YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        62 d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ....+|.++.|+|||||++++++-
T Consensus       224 ~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          224 TQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecc
Confidence            023589999999999999999874

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.25  E-value=0.00013  Score=67.41  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             eeccCCCcHHHHHHHHHcC----------CCcEEEEccCCC-CCCCCCcccEEEecCcCccc---ccC----hHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG----------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPW---TSY----DGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~---~~d----~~~~L~Ei   70 (294)
                      .+...|+++.|++.|+++-          ..+.+.++|+.. ++..+++||+|++.... |+   ...    ...+++++
T Consensus       103 ~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~~~~l~~~~~l~~~  181 (314)
T 1uir_A          103 KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD-PVGEDNPARLLYTVEFYRLV  181 (314)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC-CBSTTCGGGGGSSHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCC-cccccCcchhccHHHHHHHH
Confidence            5667799999999998742          235666677554 45567899999998665 54   211    24789999


Q ss_pred             HhccCCCcEEEEEc
Q 041513           71 DRVLRPGGYWVVSG   84 (294)
Q Consensus        71 ~RVLKPGG~~vis~   84 (294)
                      .|+|||||.|++..
T Consensus       182 ~~~LkpgG~lv~~~  195 (314)
T 1uir_A          182 KAHLNPGGVMGMQT  195 (314)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEEc
Confidence            99999999999964

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.24  E-value=0.00043  Score=63.47  Aligned_cols=76  Identities=12%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCccccc-----ChHHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTS-----YDGLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~-----d~~~~L~Ei~RV   73 (294)
                      .+...|+++.+++.|+++-         ..+.+.+.|+.. ++..+++||+|++...- ++..     ....+++++.|+
T Consensus       116 ~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~~l~~~~~l~~~~~~  194 (296)
T 1inl_A          116 KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD-PTAGQGGHLFTEEFYQACYDA  194 (296)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCC-cccCchhhhhHHHHHHHHHHh
Confidence            5667799999999998752         235666676443 45567889999985332 3221     124799999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||.|++...
T Consensus       195 LkpgG~lv~~~~  206 (296)
T 1inl_A          195 LKEDGVFSAETE  206 (296)
T ss_dssp             EEEEEEEEEECC
T ss_pred             cCCCcEEEEEcc
Confidence            999999999763

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.23  E-value=0.00011  Score=72.33  Aligned_cols=74  Identities=12%  Similarity=0.021  Sum_probs=56.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|+|+ |++.|+++    ++  .+.+..++...++++ +.||+|+|...++|+... ....+.++.|+|||||+++
T Consensus       183 ~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li  260 (480)
T 3b3j_A          183 KIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF  260 (480)
T ss_dssp             EEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence            456779998 99888764    44  367777888888776 579999998777565432 3467889999999999998


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       261 ~~~  263 (480)
T 3b3j_A          261 PTI  263 (480)
T ss_dssp             SCE
T ss_pred             EEe
Confidence            643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.22  E-value=4.6e-05  Score=69.72  Aligned_cols=53  Identities=13%  Similarity=0.002  Sum_probs=38.5

Q ss_pred             CcEEE--EccCCCCCCCCCcccEEEecCcCccc----ccChH--HHHHHHHhccCCCc--EEEEEc
Q 041513           29 PAMVG--LLSTYQLPYPSRSFDVAHCSRCLVPW----TSYDG--LYLMEIDRVLRPGG--YWVVSG   84 (294)
Q Consensus        29 ~~~~~--v~d~~~LPfpd~sFD~V~~s~~l~h~----~~d~~--~~L~Ei~RVLKPGG--~~vis~   84 (294)
                      ++.+.  ++|+..+|  +++||+|+|..+ .+.    .+...  .+|.++.|+|||||  .|++..
T Consensus       131 ~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          131 NLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             GGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            46676  67777765  789999999876 221    11111  37999999999999  999865

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.21  E-value=5.2e-05  Score=68.86  Aligned_cols=53  Identities=15%  Similarity=0.057  Sum_probs=38.5

Q ss_pred             CcEEE--EccCCCCCCCCCcccEEEecCcCcccc----cChH--HHHHHHHhccCCCc--EEEEEc
Q 041513           29 PAMVG--LLSTYQLPYPSRSFDVAHCSRCLVPWT----SYDG--LYLMEIDRVLRPGG--YWVVSG   84 (294)
Q Consensus        29 ~~~~~--v~d~~~LPfpd~sFD~V~~s~~l~h~~----~d~~--~~L~Ei~RVLKPGG--~~vis~   84 (294)
                      ++.+.  ++|+..+|  +++||+|+|..+ .+..    +...  .+|.++.|+|||||  .|++..
T Consensus       123 ~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          123 NIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             GGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            45666  67777765  789999999866 2211    1111  37999999999999  999865

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.20  E-value=0.00023  Score=59.95  Aligned_cols=42  Identities=12%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             CCCCcccEEEecCcCcccc----cCh-------HHHHHHHHhccCCCcEEEEEc
Q 041513           42 YPSRSFDVAHCSRCLVPWT----SYD-------GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        42 fpd~sFD~V~~s~~l~h~~----~d~-------~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +++++||+|+|..++ |+.    .+.       ..+++++.|+|||||.|++..
T Consensus       102 ~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          102 LQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             HTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            678899999998887 542    111       137899999999999999865

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.20  E-value=0.00032  Score=63.90  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccCh----HHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYD----GLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~----~~~L~Ei~RVL   74 (294)
                      .+...|+++.+++.|+++-         ..+.+.+.|+.. ++..+++||+|++.... ++....    ..+++++.|+|
T Consensus       104 ~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L  182 (283)
T 2i7c_A          104 NIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSD-PIGPAETLFNQNFYEKIYNAL  182 (283)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCC-TTTGGGGGSSHHHHHHHHHHE
T ss_pred             EEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCC-CCCcchhhhHHHHHHHHHHhc
Confidence            5667799999999999852         235666666543 33347889999986443 332221    47999999999


Q ss_pred             CCCcEEEEEcC
Q 041513           75 RPGGYWVVSGP   85 (294)
Q Consensus        75 KPGG~~vis~p   85 (294)
                      ||||.+++...
T Consensus       183 ~pgG~lv~~~~  193 (283)
T 2i7c_A          183 KPNGYCVAQCE  193 (283)
T ss_dssp             EEEEEEEEECC
T ss_pred             CCCcEEEEECC
Confidence            99999999864

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.18  E-value=0.00024  Score=66.41  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=54.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCCCC----CCCcccEEEecCc---------CcccccChHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQLPY----PSRSFDVAHCSRC---------LVPWTSYDGLYLM   68 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~LPf----pd~sFD~V~~s~~---------l~h~~~d~~~~L~   68 (294)
                      .+...|+|+.|++.|+++    ++.   +.+.+.|+..+..    .+++||+|++.--         +.++..+...++.
T Consensus       177 ~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~  256 (332)
T 2igt_A          177 EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  256 (332)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHH
Confidence            567789999999999875    443   5677777554321    1578999998321         1123334557999


Q ss_pred             HHHhccCCCcEEEEEc
Q 041513           69 EIDRVLRPGGYWVVSG   84 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~   84 (294)
                      ++.++|||||+|++..
T Consensus       257 ~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          257 ICREILSPKALGLVLT  272 (332)
T ss_dssp             HHHHTBCTTCCEEEEE
T ss_pred             HHHHhcCcCcEEEEEE
Confidence            9999999999987765

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.17  E-value=0.00033  Score=65.17  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL   74 (294)
                      .+...|+++++++.|+++-         ..+.+.+.|+.. ++..+++||+|++...- ++...    ...+++++.|+|
T Consensus       142 ~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~-p~~~~~~l~~~~~l~~~~~~L  220 (321)
T 2pt6_A          142 NIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSD-PIGPAETLFNQNFYEKIYNAL  220 (321)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCC-SSSGGGGGSSHHHHHHHHHHE
T ss_pred             EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcC-CCCcchhhhHHHHHHHHHHhc
Confidence            5667799999999998852         135566666443 34457889999986432 33211    147999999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||.+++..
T Consensus       221 kpgG~lv~~~  230 (321)
T 2pt6_A          221 KPNGYCVAQC  230 (321)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEc
Confidence            9999999965

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.17  E-value=0.00027  Score=66.19  Aligned_cols=75  Identities=13%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             eeccCCCcHHHHHHHHHcC-----CCcEEEEccCCCC--CCCCCcccEEEecCcCccccc----ChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERG-----LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTS----YDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg-----v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~----d~~~~L~Ei~RVLKPG   77 (294)
                      .+...|+++.|++.|+++-     -.+.+.+.|+...  .+++++||+|++.... ++..    ....+++++.|+||||
T Consensus       115 ~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~-~~~~~~~L~t~efl~~~~r~Lkpg  193 (317)
T 3gjy_A          115 RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA-GAITPQNFTTVEFFEHCHRGLAPG  193 (317)
T ss_dssp             EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST-TSCCCGGGSBHHHHHHHHHHEEEE
T ss_pred             EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC-ccccchhhhHHHHHHHHHHhcCCC
Confidence            4566799999999999862     2356667775543  3567899999986433 3211    1247999999999999


Q ss_pred             cEEEEEc
Q 041513           78 GYWVVSG   84 (294)
Q Consensus        78 G~~vis~   84 (294)
                      |.|++..
T Consensus       194 Gvlv~~~  200 (317)
T 3gjy_A          194 GLYVANC  200 (317)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999865

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.15  E-value=0.00041  Score=62.64  Aligned_cols=71  Identities=10%  Similarity=0.024  Sum_probs=56.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+++.+++.|+++    ++ ++.+..+|+..++. ++.||+|++....     +...++.++.|+|||||.++++
T Consensus       145 ~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~-----~~~~~l~~~~~~LkpgG~l~~s  218 (272)
T 3a27_A          145 LVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH-----KTHKFLDKTFEFLKDRGVIHYH  218 (272)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-----cHHHHHHHHHHHcCCCCEEEEE
Confidence            466779999999999874    44 45677778777655 6789999987554     4457999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       219 ~~  220 (272)
T 3a27_A          219 ET  220 (272)
T ss_dssp             EE
T ss_pred             Ec
Confidence            74

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.13  E-value=0.00015  Score=66.91  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=53.1

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL   74 (294)
                      .+...|+++.|++.|+++-         ..+.+...|+.. ++..+++||+|++.... ++...    ...+++++.|+|
T Consensus       121 ~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L  199 (304)
T 2o07_A          121 SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD-PMGPAESLFKESYYQLMKTAL  199 (304)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC------------CHHHHHHHHHE
T ss_pred             EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCC-CCCcchhhhHHHHHHHHHhcc
Confidence            4666799999999998752         235666677543 55567899999986544 33211    136899999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||.|++..
T Consensus       200 kpgG~lv~~~  209 (304)
T 2o07_A          200 KEDGVLCCQG  209 (304)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCeEEEEec
Confidence            9999999975

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.12  E-value=0.0002  Score=68.55  Aligned_cols=46  Identities=22%  Similarity=0.350  Sum_probs=38.1

Q ss_pred             CCCCCCCcccEEEecCcCcccccCh--------------------------------------HHHHHHHHhccCCCcEE
Q 041513           39 QLPYPSRSFDVAHCSRCLVPWTSYD--------------------------------------GLYLMEIDRVLRPGGYW   80 (294)
Q Consensus        39 ~LPfpd~sFD~V~~s~~l~h~~~d~--------------------------------------~~~L~Ei~RVLKPGG~~   80 (294)
                      .-.||+++||+|+++.+| ||..+.                                      ..+|+...|.|+|||++
T Consensus       143 ~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~m  221 (374)
T 3b5i_A          143 RRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAM  221 (374)
T ss_dssp             SCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            345899999999999999 897632                                      22588889999999999


Q ss_pred             EEEcC
Q 041513           81 VVSGP   85 (294)
Q Consensus        81 vis~p   85 (294)
                      +++..
T Consensus       222 vl~~~  226 (374)
T 3b5i_A          222 FLVCL  226 (374)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99873

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.11  E-value=0.00094  Score=62.47  Aligned_cols=70  Identities=21%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             CCCcHHHHHHHHHcC----C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEEEcC
Q 041513           13 LDVHEAQVQFALERG----L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        13 ~D~S~~mlq~A~erg----v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .|. +.+++.|+++.    . .+.+...|....|++  .+|+|++..+||+|.++. ..+|+++.++|+|||+++|...
T Consensus       209 ~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          209 FDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             EEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            354 67899998752    2 356666776555655  479999999998886543 3689999999999999999874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.11  E-value=0.00035  Score=68.57  Aligned_cols=77  Identities=25%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC-CCCCcccEEEe----cC--cCcc-------cccC--------
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP-YPSRSFDVAHC----SR--CLVP-------WTSY--------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP-fpd~sFD~V~~----s~--~l~h-------~~~d--------   62 (294)
                      .+...|+|+.+++.++++    |+.+.+...|+..++ +.+++||+|++    +.  ++.+       |..+        
T Consensus       128 ~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~  207 (464)
T 3m6w_A          128 LLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEV  207 (464)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHH
Confidence            456779999999999874    666666667766665 45789999994    21  2211       1110        


Q ss_pred             hHHHHHHHHhccCCCcEEEEEcC
Q 041513           63 DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        63 ~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ...+|.++.++|||||+|++++-
T Consensus       208 Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          208 QKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEES
T ss_pred             HHHHHHHHHHhcCCCcEEEEEec
Confidence            14689999999999999999874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.10  E-value=0.001  Score=62.89  Aligned_cols=74  Identities=15%  Similarity=-0.060  Sum_probs=53.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCccccc------C-hHHHHHHHHhccC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS------Y-DGLYLMEIDRVLR   75 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~------d-~~~~L~Ei~RVLK   75 (294)
                      .+.+.|+|+.|++.|+++    |+  .+.+.++|+..+|+++++||+|+|.--+.....      + -..+++++.|+| 
T Consensus       243 ~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-  321 (373)
T 3tm4_A          243 EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-  321 (373)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-
T ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-
Confidence            567889999999999875    55  578888999999999999999999644321111      1 146889999999 


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                       ||.+++..
T Consensus       322 -~g~~~~i~  329 (373)
T 3tm4_A          322 -EKRGVFIT  329 (373)
T ss_dssp             -EEEEEEEE
T ss_pred             -CCeEEEEE
Confidence             44444443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.09  E-value=0.00039  Score=59.72  Aligned_cols=73  Identities=15%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCC-C-CC---CCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQL-P-YP---SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~L-P-fp---d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      .+...|+++.+++.|+++    ++  .+.+.++++... + ++   .++||+|++....    .....++.++.|+||||
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~----~~~~~~l~~~~~~L~pg  160 (223)
T 3duw_A           85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADK----QNNPAYFEWALKLSRPG  160 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCG----GGHHHHHHHHHHTCCTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCc----HHHHHHHHHHHHhcCCC
Confidence            567789999999999864    44  366767765332 2 22   2679999987553    23347999999999999


Q ss_pred             cEEEEEcC
Q 041513           78 GYWVVSGP   85 (294)
Q Consensus        78 G~~vis~p   85 (294)
                      |++++...
T Consensus       161 G~lv~~~~  168 (223)
T 3duw_A          161 TVIIGDNV  168 (223)
T ss_dssp             CEEEEESC
T ss_pred             cEEEEeCC
Confidence            98888653

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.07  E-value=0.0016  Score=56.77  Aligned_cols=72  Identities=24%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CC--------------CCC--CcccEEEecCcCcccccChHH
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LP--------------YPS--RSFDVAHCSRCLVPWTSYDGL   65 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LP--------------fpd--~sFD~V~~s~~l~h~~~d~~~   65 (294)
                      .+...|+++.+++.|+++    ++.  +.+..++... ++              |++  ++||+|++....    .+...
T Consensus        87 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~----~~~~~  162 (239)
T 2hnk_A           87 KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK----ENYPN  162 (239)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG----GGHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH----HHHHH
Confidence            566779999999999875    442  5566665332 22              444  889999988554    23447


Q ss_pred             HHHHHHhccCCCcEEEEEc
Q 041513           66 YLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        66 ~L~Ei~RVLKPGG~~vis~   84 (294)
                      ++.++.++|||||++++..
T Consensus       163 ~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          163 YYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHcCCCeEEEEEc
Confidence            9999999999999999965

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.03  E-value=0.00024  Score=63.25  Aligned_cols=72  Identities=13%  Similarity=0.110  Sum_probs=53.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-CCC------CCCcccEEEecCcCcccccChHHHHHHHHhccC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ-LPY------PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLR   75 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-LPf------pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLK   75 (294)
                      .+...|+++.|++.|+++    ++  .+.+..+++.. ++.      ++++||+|++....    .+...++.++.|+||
T Consensus       106 ~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~Lk  181 (247)
T 1sui_A          106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK----DNYLNYHKRLIDLVK  181 (247)
T ss_dssp             EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS----TTHHHHHHHHHHHBC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch----HHHHHHHHHHHHhCC
Confidence            466779999999999874    44  35666666543 342      26899999987442    345589999999999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||++++..
T Consensus       182 pGG~lv~d~  190 (247)
T 1sui_A          182 VGGVIGYDN  190 (247)
T ss_dssp             TTCCEEEEC
T ss_pred             CCeEEEEec
Confidence            999999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.01  E-value=0.00047  Score=62.56  Aligned_cols=75  Identities=13%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             eeccCCCcHHHHHHHHHcC------C---CcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG------L---PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg------v---~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL   74 (294)
                      .+...|+++.+++.|++.-      .   .+.+...|+.. ++..+++||+|++.... ++...    ...+++++.|+|
T Consensus       101 ~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L  179 (275)
T 1iy9_A          101 KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTE-PVGPAVNLFTKGFYAGIAKAL  179 (275)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSS-CCSCCCCCSTTHHHHHHHHHE
T ss_pred             eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhc
Confidence            4566799999999998742      2   35666677544 45557899999986544 43221    247999999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||.|++..
T Consensus       180 ~pgG~lv~~~  189 (275)
T 1iy9_A          180 KEDGIFVAQT  189 (275)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCCcEEEEEc
Confidence            9999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.00  E-value=0.00034  Score=61.27  Aligned_cols=72  Identities=19%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCC----CCCCCC--CcccEEEecCcCcccccChHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTY----QLPYPS--RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~----~LPfpd--~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP   76 (294)
                      .+...|+++.+++.|+++    ++  .+.+.+.++.    .+++++  ++||+|++....    .+...++.++.|+|||
T Consensus        99 ~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~Lkp  174 (232)
T 3cbg_A           99 QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK----RNYPRYYEIGLNLLRR  174 (232)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG----GGHHHHHHHHHHTEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH----HHHHHHHHHHHHHcCC
Confidence            466779999999999874    44  2556666632    344444  889999977542    3445799999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||++++..
T Consensus       175 gG~lv~~~  182 (232)
T 3cbg_A          175 GGLMVIDN  182 (232)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEeC
Confidence            99999965

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.96  E-value=0.00094  Score=56.43  Aligned_cols=71  Identities=8%  Similarity=-0.025  Sum_probs=51.2

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+.++|...+|   ++||+|++...++|+... ...+++++.|+|  |+ ++++.+
T Consensus        76 ~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~~  147 (200)
T 1ne2_A           76 SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MW-IYSIGN  147 (200)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--EE-EEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--Cc-EEEEEc
Confidence            467789999999999987546777778877765   789999999998555432 236899999999  55 444443

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.89  E-value=0.00057  Score=61.82  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=51.0

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+...|++++|++.|+++-         ..+.+..+|+....   ++||+|++..      .++..+++++.|+|||||.
T Consensus        96 ~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~------~dp~~~~~~~~~~L~pgG~  166 (262)
T 2cmg_A           96 HIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ------EPDIHRIDGLKRMLKEDGV  166 (262)
T ss_dssp             EEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS------CCCHHHHHHHHTTEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC------CChHHHHHHHHHhcCCCcE
Confidence            5667799999999998642         13456566665544   8899999862      2444689999999999999


Q ss_pred             EEEEc
Q 041513           80 WVVSG   84 (294)
Q Consensus        80 ~vis~   84 (294)
                      +++..
T Consensus       167 lv~~~  171 (262)
T 2cmg_A          167 FISVA  171 (262)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99964

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.82  E-value=0.0014  Score=59.69  Aligned_cols=75  Identities=16%  Similarity=0.090  Sum_probs=53.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcc---cEEEecCcCc-----------ccc-------c
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSF---DVAHCSRCLV-----------PWT-------S   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sF---D~V~~s~~l~-----------h~~-------~   61 (294)
                      .+.+.|+|+.+++.|+++    ++.  +.+.++|... +++ ++|   |+|+|.--.+           |..       .
T Consensus       148 ~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~  225 (284)
T 1nv8_A          148 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGE  225 (284)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCC
Confidence            566789999999999875    443  6777777654 333 579   9999962110           110       1


Q ss_pred             ChHHHHHHHH-hccCCCcEEEEEcC
Q 041513           62 YDGLYLMEID-RVLRPGGYWVVSGP   85 (294)
Q Consensus        62 d~~~~L~Ei~-RVLKPGG~~vis~p   85 (294)
                      +...+++++. +.|+|||+|++..+
T Consensus       226 dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          226 DGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             TSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             cHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            2226899999 99999999998654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.79  E-value=0.00042  Score=61.53  Aligned_cols=72  Identities=13%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCC-CCC-----CCcccEEEecCcCcccccChHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQL-PYP-----SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~L-Pfp-----d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP   76 (294)
                      .+...|++++|++.|+++    ++  .+.+.++++... +..     +++||+|++...    ..+...++.++.|+|||
T Consensus        87 ~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~Lkp  162 (242)
T 3r3h_A           87 QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD----KTNYLNYYELALKLVTP  162 (242)
T ss_dssp             EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC----GGGHHHHHHHHHHHEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC----hHHhHHHHHHHHHhcCC
Confidence            355567777777777654    54  366777775443 322     589999998754    23445789999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||++++..
T Consensus       163 GG~lv~d~  170 (242)
T 3r3h_A          163 KGLIAIDN  170 (242)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEEC
Confidence            99999964

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.78  E-value=0.00024  Score=65.77  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=36.8

Q ss_pred             cEEEEc-cCCCCCCCCCcccEEEecCcCc--ccccChH---HHHHHHHhccCCCcEEEEEc
Q 041513           30 AMVGLL-STYQLPYPSRSFDVAHCSRCLV--PWTSYDG---LYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        30 ~~~~v~-d~~~LPfpd~sFD~V~~s~~l~--h~~~d~~---~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +.+... |...+  +.++||+|+|..+++  |+..+..   .+|.++.|+|||||.|++..
T Consensus       133 v~~~~~~D~~~l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          133 VRLQSGVDVFFI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             EEEECSCCTTTS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             eEEEeccccccC--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            445445 55554  467999999977652  2222222   47999999999999999865

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.77  E-value=0.0014  Score=56.25  Aligned_cols=72  Identities=18%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCC-C-CCC----CcccEEEecCcCcccccChHHHHHHHHhccCC
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQL-P-YPS----RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP   76 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~L-P-fpd----~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP   76 (294)
                      .+...|+++.+++.|+++    ++  .+.+...++... + +++    ++||+|++....    .....++.++.|+|||
T Consensus        96 ~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~----~~~~~~l~~~~~~L~p  171 (229)
T 2avd_A           96 RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADK----ENCSAYYERCLQLLRP  171 (229)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCS----TTHHHHHHHHHHHEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCH----HHHHHHHHHHHHHcCC
Confidence            466679999999999875    44  456666664322 1 221    789999986542    3345799999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||.+++..
T Consensus       172 gG~lv~~~  179 (229)
T 2avd_A          172 GGILAVLR  179 (229)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEEC
Confidence            99999965

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.72  E-value=0.00098  Score=63.34  Aligned_cols=100  Identities=9%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccCCC-CCC---CCCcccEEEecCcC--------cccccChHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQ-LPY---PSRSFDVAHCSRCL--------VPWTSYDGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~-LPf---pd~sFD~V~~s~~l--------~h~~~d~~~~L~E   69 (294)
                      .+...|+|+.|++.|+++    ++   .+.+.++|+.. ++.   ...+||+|++.--.        .+.......++.+
T Consensus       237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~  316 (385)
T 2b78_A          237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQ  316 (385)
T ss_dssp             EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHH
Confidence            466789999999999874    44   46677777544 332   24689999983211        1112222346788


Q ss_pred             HHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceE
Q 041513           70 IDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK  120 (294)
Q Consensus        70 i~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~  120 (294)
                      +.++|+|||+++++..+...         ..   ...++.+...+.....+
T Consensus       317 ~~~~L~pgG~l~~~~~~~~~---------~~---~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          317 GLEILSENGLIIASTNAANM---------TV---SQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             HHHTEEEEEEEEEEECCTTS---------CH---HHHHHHHHHHHTTCCCE
T ss_pred             HHHhcCCCcEEEEEeCCCcC---------CH---HHHHHHHHHHHHHcCCc
Confidence            89999999999998864322         11   23445565556555554

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.70  E-value=0.00039  Score=66.78  Aligned_cols=48  Identities=23%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             CCCCCCCCCcccEEEecCcCcccccChHHH---------------------------------------HHHHHhccCCC
Q 041513           37 TYQLPYPSRSFDVAHCSRCLVPWTSYDGLY---------------------------------------LMEIDRVLRPG   77 (294)
Q Consensus        37 ~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~---------------------------------------L~Ei~RVLKPG   77 (294)
                      -..-.||+++||+|+++.+| ||..+....                                       |+-..|.|+||
T Consensus       140 Fy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pG  218 (384)
T 2efj_A          140 FYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISR  218 (384)
T ss_dssp             TTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34567999999999999999 997554222                                       44448999999


Q ss_pred             cEEEEEcC
Q 041513           78 GYWVVSGP   85 (294)
Q Consensus        78 G~~vis~p   85 (294)
                      |+++++..
T Consensus       219 G~mvl~~~  226 (384)
T 2efj_A          219 GRMLLTFI  226 (384)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99999863

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.69  E-value=0.00069  Score=61.48  Aligned_cols=74  Identities=14%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             eeccCCCcHHHHHHHHHcC---------------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHH
Q 041513            9 SFAPLDVHEAQVQFALERG---------------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLM   68 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~   68 (294)
                      .+...|+++.+++.|+++-               ..+.+...|+.. ++. +++||+|++.... |+...    ...+++
T Consensus       100 ~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~  177 (281)
T 1mjf_A          100 EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTD-PVGPAKVLFSEEFYR  177 (281)
T ss_dssp             EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCC-CC-----TTSHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCC-CCCcchhhhHHHHHH
Confidence            5667799999999998752               124556666433 333 6889999986553 33221    246899


Q ss_pred             HHHhccCCCcEEEEEc
Q 041513           69 EIDRVLRPGGYWVVSG   84 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~   84 (294)
                      ++.|+|||||.+++..
T Consensus       178 ~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          178 YVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEc
Confidence            9999999999999975

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.68  E-value=0.00057  Score=63.09  Aligned_cols=54  Identities=17%  Similarity=0.031  Sum_probs=39.7

Q ss_pred             cEE-EEccCCCCCCCCCcccEEEecCcCcccc-----c------ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           30 AMV-GLLSTYQLPYPSRSFDVAHCSRCLVPWT-----S------YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        30 ~~~-~v~d~~~LPfpd~sFD~V~~s~~l~h~~-----~------d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+ .++|...++++ ++||+|+|.... ++.     +      ....+++++.|+|||||.|++...
T Consensus       107 v~~~i~gD~~~~~~~-~~fD~Vvsn~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          107 ADSTLIGDCATVHTA-NKWDLIISDMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             SSEEEESCGGGCCCS-SCEEEEEECCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEECccccCCcc-CcccEEEEcCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            456 77888888775 789999986442 221     1      123689999999999999999763

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.66  E-value=0.0016  Score=63.70  Aligned_cols=77  Identities=16%  Similarity=0.072  Sum_probs=53.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC-CCCCcccEEEecC---cCcccccCh----------------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP-YPSRSFDVAHCSR---CLVPWTSYD----------------   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP-fpd~sFD~V~~s~---~l~h~~~d~----------------   63 (294)
                      .+...|+|+.+++.++++    |+. +.+...|+..++ +.+++||+|++--   ..-.+..++                
T Consensus       132 ~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~  211 (456)
T 3m4x_A          132 LLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQK  211 (456)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHH
Confidence            456779999999998764    554 555566766654 3468999999621   111111111                


Q ss_pred             --HHHHHHHHhccCCCcEEEEEcC
Q 041513           64 --GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 --~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                        ..+|.++.++|||||++++++-
T Consensus       212 ~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          212 RQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEe
Confidence              2579999999999999999874

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.59  E-value=0.00028  Score=70.44  Aligned_cols=75  Identities=9%  Similarity=-0.018  Sum_probs=58.0

Q ss_pred             eeeccCCCcHHHHHHHHHc----C-CCcEEEEccCCCC--CCCCCcccEEEecCcCcccccChH--HHHHHHHhccCCCc
Q 041513            8 MSFAPLDVHEAQVQFALER----G-LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYDG--LYLMEIDRVLRPGG   78 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----g-v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~~--~~L~Ei~RVLKPGG   78 (294)
                      -.+.++|.|+.+|+.|+.+    | +++.+.+.+++.+  ++++++||+|+|..+++|.. ++.  ..+..+.+.|+++|
T Consensus        89 a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~-~~~~~~~~~~~~~tl~~~~  167 (569)
T 4azs_A           89 ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIV-HLHGIDEVKRLLSRLADVT  167 (569)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHH-HHHCHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhcCC-CHHHHHHHHHHHHHhcccc
Confidence            3677889999999998753    4 5678888888887  67889999999999997764 442  34556777788888


Q ss_pred             EEEEE
Q 041513           79 YWVVS   83 (294)
Q Consensus        79 ~~vis   83 (294)
                      ..++.
T Consensus       168 ~~~~~  172 (569)
T 4azs_A          168 QAVIL  172 (569)
T ss_dssp             SEEEE
T ss_pred             ceeeE
Confidence            76654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.58  E-value=0.00066  Score=59.80  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CC-C-----CCCcccEEEecCcCcccccChHHHHHHHHhccC
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LP-Y-----PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLR   75 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LP-f-----pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLK   75 (294)
                      .+...|+++.+++.|+++    |+.  +.+.++++.. ++ +     ++++||+|++...    ..+...+++++.++||
T Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~----~~~~~~~l~~~~~~L~  172 (237)
T 3c3y_A           97 KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD----KPNYIKYHERLMKLVK  172 (237)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc----hHHHHHHHHHHHHhcC
Confidence            456679999999999864    552  5666666443 23 2     2688999997633    2344579999999999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||++++..
T Consensus       173 pGG~lv~d~  181 (237)
T 3c3y_A          173 VGGIVAYDN  181 (237)
T ss_dssp             EEEEEEEEC
T ss_pred             CCeEEEEec
Confidence            999998864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.58  E-value=0.0031  Score=58.51  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-----------------HHH
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-----------------GLY   66 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-----------------~~~   66 (294)
                      ..+.+.|+++.+++.|+.+    |+.+.+..+|+.. +.+...||+|++.--+.++..+.                 ..+
T Consensus       160 ~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~  238 (344)
T 2f8l_A          160 VHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLF  238 (344)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHH
Confidence            5788999999999999874    6667777777554 34568899999987663332111                 147


Q ss_pred             HHHHHhccCCCcEEEEEcC
Q 041513           67 LMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        67 L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.++.+.|||||++++..|
T Consensus       239 l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          239 IEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             HHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCCEEEEEEC
Confidence            9999999999999999875

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.55  E-value=0.0017  Score=61.39  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCC----CCCcccEEEecCcCc--------ccccChHHHHHHH
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPY----PSRSFDVAHCSRCLV--------PWTSYDGLYLMEI   70 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPf----pd~sFD~V~~s~~l~--------h~~~d~~~~L~Ei   70 (294)
                      -.+...|+|+.+++.|+++    ++. +.+.++|+.....    .+++||+|++.--..        +.......++.++
T Consensus       232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~  311 (382)
T 1wxx_A          232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRA  311 (382)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHH
Confidence            4577889999999999875    443 6677777554321    267899999842110        1112334689999


Q ss_pred             HhccCCCcEEEEEcCCC
Q 041513           71 DRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        71 ~RVLKPGG~~vis~pp~   87 (294)
                      .++|+|||+++++..+.
T Consensus       312 ~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          312 IKLLKEGGILATASCSH  328 (382)
T ss_dssp             HHTEEEEEEEEEEECCT
T ss_pred             HHhcCCCCEEEEEECCC
Confidence            99999999999988643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.55  E-value=0.0026  Score=60.37  Aligned_cols=79  Identities=15%  Similarity=0.039  Sum_probs=56.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccCCCCCC----CCCcccEEEecCcC--------cccccChHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQLPY----PSRSFDVAHCSRCL--------VPWTSYDGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~LPf----pd~sFD~V~~s~~l--------~h~~~d~~~~L~E   69 (294)
                      .+...|+|+.+++.|+++    ++   .+.+..+|+.....    ....||+|++.--.        .+.......++.+
T Consensus       245 ~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~  324 (396)
T 3c0k_A          245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML  324 (396)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHH
Confidence            567789999999999874    56   46677777554321    25789999985311        1222344578999


Q ss_pred             HHhccCCCcEEEEEcCCC
Q 041513           70 IDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        70 i~RVLKPGG~~vis~pp~   87 (294)
                      +.++|+|||+++++..+.
T Consensus       325 ~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          325 AIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             HHHTEEEEEEEEEEECCT
T ss_pred             HHHhcCCCcEEEEEeCCC
Confidence            999999999999988654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.51  E-value=0.00087  Score=68.86  Aligned_cols=78  Identities=18%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCC-CCCCCCcccEEEecCcC----------cccccChHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQ-LPYPSRSFDVAHCSRCL----------VPWTSYDGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~-LPfpd~sFD~V~~s~~l----------~h~~~d~~~~L~Ei   70 (294)
                      .+...|+|+.+++.|+++    ++.   +.+.++|+.. ++...++||+|++.--.          .+...+...++.++
T Consensus       564 ~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a  643 (703)
T 3v97_A          564 STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDL  643 (703)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHH
Confidence            366779999999999874    443   6677777554 55667899999984311          12223344689999


Q ss_pred             HhccCCCcEEEEEcCC
Q 041513           71 DRVLRPGGYWVVSGPP   86 (294)
Q Consensus        71 ~RVLKPGG~~vis~pp   86 (294)
                      .++|||||+|+++...
T Consensus       644 ~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          644 KRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             HHHEEEEEEEEEEECC
T ss_pred             HHhcCCCcEEEEEECC
Confidence            9999999999998864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.47  E-value=0.0014  Score=54.75  Aligned_cols=56  Identities=18%  Similarity=0.069  Sum_probs=38.6

Q ss_pred             cEEE-EccCCCCC--------CCCCcccEEEecCcCc---ccccCh-------HHHHHHHHhccCCCcEEEEEcC
Q 041513           30 AMVG-LLSTYQLP--------YPSRSFDVAHCSRCLV---PWTSYD-------GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        30 ~~~~-v~d~~~LP--------fpd~sFD~V~~s~~l~---h~~~d~-------~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+. .+|....+        +++++||+|+|..+++   |+..+.       ..+++++.|+|||||.|++...
T Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           72 ATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             CEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            4555 55544433        4567899999976542   222222       3789999999999999999864

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.45  E-value=0.0014  Score=62.38  Aligned_cols=47  Identities=28%  Similarity=0.416  Sum_probs=38.7

Q ss_pred             CCCCCCCCCcccEEEecCcCcccccChH---------------------------------HHHHHHHhccCCCcEEEEE
Q 041513           37 TYQLPYPSRSFDVAHCSRCLVPWTSYDG---------------------------------LYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        37 ~~~LPfpd~sFD~V~~s~~l~h~~~d~~---------------------------------~~L~Ei~RVLKPGG~~vis   83 (294)
                      -..-.||+++||+|+++.+| ||..+..                                 .+|+-..|.|+|||+++++
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            44568999999999999999 9975421                                 1378889999999999997


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       209 ~  209 (359)
T 1m6e_X          209 I  209 (359)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.32  E-value=0.0015  Score=59.48  Aligned_cols=70  Identities=17%  Similarity=0.074  Sum_probs=49.2

Q ss_pred             eeccCCCcHHHHHHHHHcC----C--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChH-HHH--------------
Q 041513            9 SFAPLDVHEAQVQFALERG----L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYL--------------   67 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L--------------   67 (294)
                      .+.+.|+++.|++.|+++.    .  .+.+..+|+..++++  +||+|+++..+ ||..+.. .++              
T Consensus        52 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~q  128 (285)
T 1zq9_A           52 KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQ  128 (285)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhh
Confidence            4667799999999998752    2  356777888888776  79999997655 5543221 111              


Q ss_pred             HHHH--hccCCCcEEE
Q 041513           68 MEID--RVLRPGGYWV   81 (294)
Q Consensus        68 ~Ei~--RVLKPGG~~v   81 (294)
                      +|+.  |+|||||.++
T Consensus       129 kEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          129 REFALRLVAKPGDKLY  144 (285)
T ss_dssp             HHHHHHHHCCTTCTTC
T ss_pred             HHHHHHHhcCCCCccc
Confidence            4553  7999999873

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.31  E-value=0.0017  Score=61.50  Aligned_cols=77  Identities=13%  Similarity=0.025  Sum_probs=54.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCC----CCCcccEEEecCcCc--------ccccChHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPY----PSRSFDVAHCSRCLV--------PWTSYDGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPf----pd~sFD~V~~s~~l~--------h~~~d~~~~L~Ei   70 (294)
                      .+.+.|+|+.+++.|+++    ++  .+.+..+|+..+..    ++++||+|++.--..        +...+...++.++
T Consensus       242 ~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~  321 (396)
T 2as0_A          242 EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAG  321 (396)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            566789999999999874    45  46677777554421    367899999843210        1113344689999


Q ss_pred             HhccCCCcEEEEEcC
Q 041513           71 DRVLRPGGYWVVSGP   85 (294)
Q Consensus        71 ~RVLKPGG~~vis~p   85 (294)
                      .++|||||+++++..
T Consensus       322 ~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          322 LNLVKDGGILVTCSC  336 (396)
T ss_dssp             HTTEEEEEEEEEEEC
T ss_pred             HHhcCCCcEEEEEEC
Confidence            999999999999875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.16  E-value=0.036  Score=46.52  Aligned_cols=70  Identities=10%  Similarity=0.058  Sum_probs=51.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++.+.+..+|...+|   ++||+|++...++++.. ....++.++.++|  ||.+++.
T Consensus        74 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A           74 EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            467789999999999875    335677778877764   48999999887744432 2346899999999  6655444

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=95.90  E-value=0.028  Score=51.65  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +...|+++.|+++++++    |++..+.+.|...-+ +...||+|++.-+++|..+......-++...|+|||.||--..
T Consensus       159 y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          159 YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence            34559999999999875    677777777644333 5677999999999955543332344499999999998875432


Q ss_pred             -CCCccccCCCcccChHHHHHHHHHHHHHHHhhce
Q 041513           86 -PISWKTSYRGWERDAKDLQKEQISLENLATRLCW  119 (294)
Q Consensus        86 -p~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW  119 (294)
                       .+.-        +++...+..+..++..+....|
T Consensus       238 ksl~G--------rs~gm~~~Y~~~~e~~~~~~g~  264 (281)
T 3lcv_B          238 KSLGQ--------RSKGMFQNYSQSFESQARERSC  264 (281)
T ss_dssp             C---------------CHHHHHHHHHHHHHHHHTC
T ss_pred             hhhcC--------CCcchhhHHHHHHHHHHHhcCC
Confidence             1221        2223334455667777766666

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=95.89  E-value=0.0051  Score=55.82  Aligned_cols=74  Identities=15%  Similarity=-0.024  Sum_probs=56.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+++.|++++++.    +.+..+.++|....|++. +||+|++.-+++|..+........+..-|+++|.++-.
T Consensus       128 ~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          128 SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSF  205 (253)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEc
Confidence            345679999999999875    567778888887777766 89999999888555333334555999999999766543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=95.82  E-value=0.013  Score=52.35  Aligned_cols=94  Identities=16%  Similarity=-0.033  Sum_probs=65.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++    ++  .+.+..+|......+++.||+|+.+...-.   -...++.+..+.|+++|+|++
T Consensus        47 ~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg~---lI~~IL~~~~~~l~~~~~lIl  123 (230)
T 3lec_A           47 FAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGGR---LIADILNNDIDKLQHVKTLVL  123 (230)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCchH---HHHHHHHHHHHHhCcCCEEEE
Confidence            567789999999999874    44  366777776666556568999886654411   223688889999999999999


Q ss_pred             EcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513           83 SGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE  124 (294)
Q Consensus        83 s~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~  124 (294)
                      +..-            ..       ..+.+.+...+|..+.+
T Consensus       124 qp~~------------~~-------~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A          124 QPNN------------RE-------DDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             EESS------------CH-------HHHHHHHHHTTEEEEEE
T ss_pred             ECCC------------Ch-------HHHHHHHHHCCCEEEEE
Confidence            8741            11       23555566667776654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.65  E-value=0.0051  Score=58.87  Aligned_cols=76  Identities=12%  Similarity=-0.052  Sum_probs=51.5

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcEEEEccCCCC-CCCCCcccEEEecCcCccc--------ccChHHHHHHHHhccCC
Q 041513           10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQL-PYPSRSFDVAHCSRCLVPW--------TSYDGLYLMEIDRVLRP   76 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~L-Pfpd~sFD~V~~s~~l~h~--------~~d~~~~L~Ei~RVLKP   76 (294)
                      +...|+|+.|++.|+++    ++...+.++|+... +...+.||+|++.--..+-        ..+...++.++.|+|||
T Consensus       239 V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~Lkp  318 (393)
T 4dmg_A          239 ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAE  318 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            66789999999999874    56655666775442 2223449999985321010        11223688999999999


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      ||+++++..
T Consensus       319 GG~Lv~~s~  327 (393)
T 4dmg_A          319 EGFLWLSSC  327 (393)
T ss_dssp             EEEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            999997663

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=95.60  E-value=0.024  Score=53.97  Aligned_cols=70  Identities=20%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             cCCCcHHHHHHHHH----cCC--CcEEEEccCCCCCCCCCcccEEEe---cCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513           12 PLDVHEAQVQFALE----RGL--PAMVGLLSTYQLPYPSRSFDVAHC---SRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        12 p~D~S~~mlq~A~e----rgv--~~~~~v~d~~~LPfpd~sFD~V~~---s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      +.|.|+ |++.|++    .|+  .+.+...+.+.+.+| ..||+|+|   ..++ .+......++....|.|||||.++-
T Consensus       111 ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l-~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          111 AVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGL-LHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             EEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTB-TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             EEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccc-cccchhhhHHHHHHhhCCCCceECC
Confidence            445553 6666654    455  366777788888887 57999998   3444 3334455788899999999999886


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      +.
T Consensus       188 ~~  189 (376)
T 4hc4_A          188 AS  189 (376)
T ss_dssp             CE
T ss_pred             cc
Confidence            43

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=95.57  E-value=0.012  Score=54.59  Aligned_cols=68  Identities=7%  Similarity=0.054  Sum_probs=52.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+|+.+++.|+++    ++  .+.+..+|+....   +.||+|++.--.     ....++.++.++|+|||.+++
T Consensus       218 ~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-----~~~~~l~~~~~~L~~gG~l~~  289 (336)
T 2yx1_A          218 KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-----FAHKFIDKALDIVEEGGVIHY  289 (336)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-----TGGGGHHHHHHHEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-----hHHHHHHHHHHHcCCCCEEEE
Confidence            566789999999999874    44  4677777876665   889999985321     123789999999999999998


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      +.
T Consensus       290 ~~  291 (336)
T 2yx1_A          290 YT  291 (336)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=95.37  E-value=0.023  Score=51.16  Aligned_cols=74  Identities=14%  Similarity=-0.072  Sum_probs=54.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++    |+.  +.+..+|......++..||+|+.+...-   +-...+|.+..+.|+++|+|++
T Consensus        47 ~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg---~lI~~IL~~~~~~L~~~~~lIl  123 (244)
T 3gnl_A           47 FAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG---TLIRTILEEGAAKLAGVTKLIL  123 (244)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCch---HHHHHHHHHHHHHhCCCCEEEE
Confidence            567789999999999875    553  5677777665555555699998765431   1123688899999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +..
T Consensus       124 q~~  126 (244)
T 3gnl_A          124 QPN  126 (244)
T ss_dssp             EES
T ss_pred             EcC
Confidence            873

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.29  E-value=0.016  Score=55.79  Aligned_cols=77  Identities=17%  Similarity=0.107  Sum_probs=56.6

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC---CcEEEEccCCCCCCCCCcccEEEecCcCccc--ccC--------------hH
Q 041513            8 MSFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW--TSY--------------DG   64 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~--~~d--------------~~   64 (294)
                      ..+.+.|+++.+++.|+.+    |+   ...+.++|+...+.. ..||+|++.--+.+.  ...              ..
T Consensus       209 ~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~  287 (445)
T 2okc_A          209 KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL  287 (445)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHH
Confidence            4678889999999999763    55   455666777666654 389999997544321  111              12


Q ss_pred             HHHHHHHhccCCCcEEEEEcC
Q 041513           65 LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .++.++.+.|||||++++..|
T Consensus       288 ~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          288 NFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCEEEEEEC
Confidence            689999999999999999876

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=95.25  E-value=0.035  Score=53.55  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=51.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++    ++.+.+..+|+..+.. + +||+|++.--.   ......+++.+ +.|+|||.++++.
T Consensus       314 ~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr---~g~~~~~~~~l-~~l~p~givyvsc  387 (425)
T 2jjq_A          314 NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPR---AGLHPRLVKRL-NREKPGVIVYVSC  387 (425)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCT---TCSCHHHHHHH-HHHCCSEEEEEES
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCc---cchHHHHHHHH-HhcCCCcEEEEEC
Confidence            566789999999999874    4556677788777643 2 89999985432   11122355555 4599999999998


Q ss_pred             CC
Q 041513           85 PP   86 (294)
Q Consensus        85 pp   86 (294)
                      .|
T Consensus       388 ~p  389 (425)
T 2jjq_A          388 NP  389 (425)
T ss_dssp             CH
T ss_pred             Ch
Confidence            65

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.11  E-value=0.02  Score=48.69  Aligned_cols=56  Identities=11%  Similarity=-0.073  Sum_probs=37.6

Q ss_pred             CcEEEEccCCCCCCC-----------CCcccEEEecCcCc---ccccC-------hHHHHHHHHhccCCCcEEEEEc
Q 041513           29 PAMVGLLSTYQLPYP-----------SRSFDVAHCSRCLV---PWTSY-------DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        29 ~~~~~v~d~~~LPfp-----------d~sFD~V~~s~~l~---h~~~d-------~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.++|....+..           .++||+|+|.....   ++..+       ...++.++.|+|||||.|++..
T Consensus        63 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           63 GVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             TCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            356667777665521           14899999965331   11111       2358899999999999999876

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=94.41  E-value=0.045  Score=52.21  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=53.8

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEec--CcCcccc--cChHHHHHHHHhccCC-
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCS--RCLVPWT--SYDGLYLMEIDRVLRP-   76 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s--~~l~h~~--~d~~~~L~Ei~RVLKP-   76 (294)
                      ..+.+.|+++.|++.|+++    |+  .+.+.+.|...++.++ +||+|+|.  +.. ...  .+...+.+++.++||+ 
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~-rl~~~~~l~~ly~~lg~~lk~~  341 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGE-RLEDEEAVRQLYREMGIVYKRM  341 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCC-SHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCcc-ccCCchhHHHHHHHHHHHHhcC
Confidence            4578889999999999874    55  3778888988888764 89999998  332 111  1223456666677766 


Q ss_pred             -CcEEEEEcC
Q 041513           77 -GGYWVVSGP   85 (294)
Q Consensus        77 -GG~~vis~p   85 (294)
                       ||.+++...
T Consensus       342 ~g~~~~iit~  351 (393)
T 3k0b_A          342 PTWSVYVLTS  351 (393)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEC
Confidence             888777654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=94.40  E-value=0.07  Score=47.28  Aligned_cols=93  Identities=17%  Similarity=-0.004  Sum_probs=62.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccC-CCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLST-YQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~-~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+++.+++.|+++    ++.  +.+..+|. +.++.. ..||+|+.+..--   .-...++.+..+.|+|+|+|+
T Consensus        41 ~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~Gg---~~i~~Il~~~~~~L~~~~~lV  116 (225)
T 3kr9_A           41 SAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITIAGMGG---RLIARILEEGLGKLANVERLI  116 (225)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEECH---HHHHHHHHHTGGGCTTCCEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEEcCCCh---HHHHHHHHHHHHHhCCCCEEE
Confidence            566789999999999874    553  56666664 344332 2699988765431   112368899999999999999


Q ss_pred             EEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513           82 VSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE  124 (294)
Q Consensus        82 is~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~  124 (294)
                      ++.. .           ..       ..+.+.+...+|..+.+
T Consensus       117 lq~~-~-----------~~-------~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A          117 LQPN-N-----------RE-------DDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             EEES-S-----------CH-------HHHHHHHHHTTEEEEEE
T ss_pred             EECC-C-----------CH-------HHHHHHHHHCCCEEEEE
Confidence            9764 1           11       23445556677876665

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=94.31  E-value=0.072  Score=51.10  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+.+.|+|++|++.|+++    ++ ++.+..+|+..    +|+++++||+|++.--.   ..- ..++..+.+ ++|++.
T Consensus       310 ~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr---~g~-~~~~~~l~~-~~p~~i  384 (433)
T 1uwv_A          310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR---AGA-AGVMQQIIK-LEPIRI  384 (433)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT---TCC-HHHHHHHHH-HCCSEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCC---ccH-HHHHHHHHh-cCCCeE
Confidence            566789999999999864    44 46777777655    56788899999975322   111 235555543 799999


Q ss_pred             EEEEcCCC
Q 041513           80 WVVSGPPI   87 (294)
Q Consensus        80 ~vis~pp~   87 (294)
                      ++++..|.
T Consensus       385 vyvsc~p~  392 (433)
T 1uwv_A          385 VYVSCNPA  392 (433)
T ss_dssp             EEEESCHH
T ss_pred             EEEECChH
Confidence            99998653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.09  E-value=0.085  Score=50.20  Aligned_cols=76  Identities=11%  Similarity=0.044  Sum_probs=55.2

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEec--CcCcccc--cChHHHHHHHHhccCC-
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCS--RCLVPWT--SYDGLYLMEIDRVLRP-   76 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s--~~l~h~~--~d~~~~L~Ei~RVLKP-   76 (294)
                      ..+.+.|+++.|++.|+++    |+  .+.+.+.|...++.++ +||+|+|.  +.. ...  .+...+.+++.++||+ 
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~-rl~~~~~l~~ly~~lg~~lk~~  334 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGE-RLLDDKAVDILYNEMGETFAPL  334 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTT-TTSCHHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhh-ccCCHHHHHHHHHHHHHHHhhC
Confidence            4578889999999999874    55  3677788888888764 89999997  332 111  1233577777778876 


Q ss_pred             -CcEEEEEcC
Q 041513           77 -GGYWVVSGP   85 (294)
Q Consensus        77 -GG~~vis~p   85 (294)
                       ||.+++..+
T Consensus       335 ~g~~~~iit~  344 (384)
T 3ldg_A          335 KTWSQFILTN  344 (384)
T ss_dssp             TTSEEEEEES
T ss_pred             CCcEEEEEEC
Confidence             888887764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=94.00  E-value=0.11  Score=47.52  Aligned_cols=56  Identities=14%  Similarity=-0.008  Sum_probs=40.5

Q ss_pred             CcEEEEccCCCCCCCCCcccEEEecCcCc---ccccChH--HHHHHHHhccCCC-cEEEEEc
Q 041513           29 PAMVGLLSTYQLPYPSRSFDVAHCSRCLV---PWTSYDG--LYLMEIDRVLRPG-GYWVVSG   84 (294)
Q Consensus        29 ~~~~~v~d~~~LPfpd~sFD~V~~s~~l~---h~~~d~~--~~L~Ei~RVLKPG-G~~vis~   84 (294)
                      ++.....+++...++.+.||+|+|-.+..   ++.+...  .+|..+.++|||| |.|++..
T Consensus       123 ~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV  184 (277)
T 3evf_A          123 NIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV  184 (277)
T ss_dssp             GGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            44445555566778889999999987652   2444332  2578889999999 9999976

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=93.67  E-value=0.17  Score=46.20  Aligned_cols=70  Identities=7%  Similarity=0.042  Sum_probs=51.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.++++    ++.  +.+..+|+..++. .+.||.|++..-     .....++.+..++|||||.+.+
T Consensus       150 ~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~  223 (278)
T 3k6r_A          150 KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEE
Confidence            355679999999999874    453  5566678777653 678999987632     2234688999999999999876


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       224 ~~  225 (278)
T 3k6r_A          224 HN  225 (278)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=93.58  E-value=0.00044  Score=61.15  Aligned_cols=75  Identities=9%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCC-CcccEEEecCcC-----------cccccChHHHH----HH
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPS-RSFDVAHCSRCL-----------VPWTSYDGLYL----ME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd-~sFD~V~~s~~l-----------~h~~~d~~~~L----~E   69 (294)
                      .+.+.|+|+.|++.|+++.   ..+.+..+|...+++++ ++| .|++..-.           .|+ ......+    .+
T Consensus        53 ~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~-~~~~~~lm~q~e~  130 (245)
T 1yub_A           53 QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFES-RASDIYLIVEEGF  130 (245)
T ss_dssp             EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHC-CCEEEEEEEESSH
T ss_pred             eEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCC-CCCeEEEEeeHHH
Confidence            4677899999999987753   23556677888999884 789 66664211           121 2233455    67


Q ss_pred             HHhccCCCcEEEEEcC
Q 041513           70 IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        70 i~RVLKPGG~~vis~p   85 (294)
                      +.|+|||||.+++..+
T Consensus       131 a~rll~~~G~l~v~~~  146 (245)
T 1yub_A          131 YKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             HHHHHCGGGSHHHHTT
T ss_pred             HHHHhCCCCchhhhhe
Confidence            9999999999887664

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.56  E-value=0.07  Score=48.48  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             cEEEEccCCC-CC-CCCCcccEEEecCcCc---cc----------------ccChHHHHHHHHhccCCCcEEEEEcCCCC
Q 041513           30 AMVGLLSTYQ-LP-YPSRSFDVAHCSRCLV---PW----------------TSYDGLYLMEIDRVLRPGGYWVVSGPPIS   88 (294)
Q Consensus        30 ~~~~v~d~~~-LP-fpd~sFD~V~~s~~l~---h~----------------~~d~~~~L~Ei~RVLKPGG~~vis~pp~~   88 (294)
                      ..+.++|... ++ +++++||+|++.==..   .+                ......++.|+.|+|||||.+++......
T Consensus        22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~  101 (297)
T 2zig_A           22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA  101 (297)
T ss_dssp             EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred             CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence            4566677443 33 6789999999973221   11                11112477899999999999998764321


Q ss_pred             ccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCC
Q 041513           89 WKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPT  135 (294)
Q Consensus        89 ~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~  135 (294)
                      ......+-...    ......+..+.+..+|....    ..||.|+.
T Consensus       102 ~~~~~~g~~~~----~~~~~~l~~~~~~~Gf~~~~----~iiW~K~~  140 (297)
T 2zig_A          102 VARRRFGRHLV----FPLHADIQVRCRKLGFDNLN----PIIWHKHT  140 (297)
T ss_dssp             EECC----EEE----ECHHHHHHHHHHHTTCEEEE----EEEEECC-
T ss_pred             cccccCCcccc----cccHHHHHHHHHHcCCeeec----cEEEeCCC
Confidence            10000000000    00112344455666776554    36899985

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.21  E-value=0.15  Score=47.07  Aligned_cols=96  Identities=16%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             cEEEEccCC-CCC-CCCCcccEEEecC--cCc-----------ccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCC
Q 041513           30 AMVGLLSTY-QLP-YPSRSFDVAHCSR--CLV-----------PWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYR   94 (294)
Q Consensus        30 ~~~~v~d~~-~LP-fpd~sFD~V~~s~--~l~-----------h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~   94 (294)
                      ..+..+|.. .|. +++++||+|++.=  ...           .|.......|.|+.|+|||||.+++......-...  
T Consensus        15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~--   92 (323)
T 1boo_A           15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV--   92 (323)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE--
T ss_pred             ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC--
Confidence            345556633 243 6789999999872  211           11122446899999999999999997642210000  


Q ss_pred             CcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCC
Q 041513           95 GWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTN  136 (294)
Q Consensus        95 ~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~  136 (294)
                      .. +...    ..+.+.++.+..+|....    ..||+|+..
T Consensus        93 ~~-~~~~----~~~~i~~~~~~~Gf~~~~----~iiW~k~~~  125 (323)
T 1boo_A           93 PA-RSIY----NFRVLIRMIDEVGFFLAE----DFYWFNPSK  125 (323)
T ss_dssp             EE-ECCH----HHHHHHHHHHTTCCEEEE----EEEEECSSC
T ss_pred             cc-cccc----hHHHHHHHHHhCCCEEEE----EEEEecCCC
Confidence            00 0000    112333455666676553    468998754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=92.99  E-value=0.074  Score=48.48  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccc
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT   60 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~   60 (294)
                      .+.+.|+++.|++.|+++    +. .+.+..+|+..++++  +||+|++.... ++.
T Consensus        66 ~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py-~~~  119 (299)
T 2h1r_A           66 KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPY-KIS  119 (299)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCG-GGH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCc-ccc
Confidence            567779999999999875    33 456666788777764  89999997665 554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=92.93  E-value=0.12  Score=49.06  Aligned_cols=77  Identities=12%  Similarity=0.065  Sum_probs=55.1

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc---cChHHHHHHHHhccCC--
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT---SYDGLYLMEIDRVLRP--   76 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~---~d~~~~L~Ei~RVLKP--   76 (294)
                      ..+.+.|+++.|++.|+++    |+  .+.+.+.|...++.+ .+||+|+|.--+..-.   .+...+.+++.++||+  
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence            4678899999999999874    55  367778888888775 4899999964432111   1223577777788887  


Q ss_pred             CcEEEEEcC
Q 041513           77 GGYWVVSGP   85 (294)
Q Consensus        77 GG~~vis~p   85 (294)
                      ||.+++...
T Consensus       337 g~~~~iit~  345 (385)
T 3ldu_A          337 NWSYYLITS  345 (385)
T ss_dssp             SCEEEEEES
T ss_pred             CCEEEEEEC
Confidence            888777653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=92.50  E-value=0.4  Score=44.03  Aligned_cols=76  Identities=8%  Similarity=-0.137  Sum_probs=49.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCC---CcccEEEe----c--CcCcc-----c----c-cCh-
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPS---RSFDVAHC----S--RCLVP-----W----T-SYD-   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd---~sFD~V~~----s--~~l~h-----~----~-~d~-   63 (294)
                      .+...|+++.+++.++++    |+ .+.+...|+..++...   ..||.|++    +  .++..     |    . .+. 
T Consensus       129 ~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~  208 (309)
T 2b9e_A          129 KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLH  208 (309)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHH
Confidence            466779999999998864    55 4566677777665432   57999996    2  12211     1    0 111 


Q ss_pred             ------HHHHHHHHhccCCCcEEEEEcC
Q 041513           64 ------GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 ------~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                            ..+|....+.|+ ||++++++-
T Consensus       209 ~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          209 ALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             HHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             HHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence                  136777888887 999999874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=92.39  E-value=0.24  Score=50.76  Aligned_cols=77  Identities=17%  Similarity=0.063  Sum_probs=52.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCC--CCCCCcccEEEec--CcCcccccCh--HH---HHHHHHh
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQL--PYPSRSFDVAHCS--RCLVPWTSYD--GL---YLMEIDR   72 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~L--Pfpd~sFD~V~~s--~~l~h~~~d~--~~---~L~Ei~R   72 (294)
                      ..|.+.|+++.|++.|+++    |+.  +.+.+.|...+  |+++++||+|+|.  +.. .+....  ..   .|.++.+
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~-Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGE-RLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC----CCHHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccc-cccchhHHHHHHHHHHHHHH
Confidence            4688899999999999874    564  57777887776  5555689999997  333 122111  12   4556666


Q ss_pred             ccCCCcEEEEEcC
Q 041513           73 VLRPGGYWVVSGP   85 (294)
Q Consensus        73 VLKPGG~~vis~p   85 (294)
                      .+.|||.+++..+
T Consensus       336 ~~~~g~~~~ilt~  348 (703)
T 3v97_A          336 NQFGGWNLSLFSA  348 (703)
T ss_dssp             HHCTTCEEEEEES
T ss_pred             hhCCCCeEEEEeC
Confidence            6779999888653

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=91.74  E-value=0.038  Score=51.80  Aligned_cols=73  Identities=21%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCc--c--------cccC----------------
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLV--P--------WTSY----------------   62 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~--h--------~~~d----------------   62 (294)
                      .+.+.|+++.+++.|    ..+.+.++|....+ +++.||+|++.--+.  +        ..++                
T Consensus        66 ~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (421)
T 2ih2_A           66 RFVGVEIDPKALDLP----PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKY  140 (421)
T ss_dssp             EEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTC
T ss_pred             eEEEEECCHHHHHhC----CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCc
Confidence            456677887777766    23556667766554 357899999952111  1        1011                


Q ss_pred             --hHHHHHHHHhccCCCcEEEEEcCC
Q 041513           63 --DGLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        63 --~~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                        ...++..+.++|||||++++..|.
T Consensus       141 ~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          141 NLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEEECh
Confidence              114688999999999999998863

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=91.32  E-value=0.099  Score=51.89  Aligned_cols=78  Identities=18%  Similarity=0.159  Sum_probs=55.6

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC------cEEEEccCCCCC-CCCCcccEEEecCcCcc--cc-----------cCh
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP------AMVGLLSTYQLP-YPSRSFDVAHCSRCLVP--WT-----------SYD   63 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~------~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h--~~-----------~d~   63 (294)
                      ..+.+.|+++.+++.|+.+    |+.      ..+.++|+...+ ++...||+|++.--+..  +.           ...
T Consensus       212 ~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~  291 (541)
T 2ar0_A          212 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ  291 (541)
T ss_dssp             TSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchH
Confidence            4688899999999999863    544      456666655443 45678999998643311  11           112


Q ss_pred             HHHHHHHHhccCCCcEEEEEcC
Q 041513           64 GLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 ~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ..++..+.+.|||||++++..|
T Consensus       292 ~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          292 LCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEEec
Confidence            2689999999999999999876

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.83  E-value=0.51  Score=41.83  Aligned_cols=21  Identities=10%  Similarity=0.047  Sum_probs=18.2

Q ss_pred             HHHHHHHHhccCCCcEEEEEc
Q 041513           64 GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        64 ~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      ...|.|+.|+|+|||.+++..
T Consensus        54 ~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A           54 YRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCeEEEEEc
Confidence            358899999999999998874

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=89.56  E-value=0.28  Score=43.15  Aligned_cols=44  Identities=9%  Similarity=0.074  Sum_probs=32.8

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCC-CcccEEEec
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPS-RSFDVAHCS   53 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd-~sFD~V~~s   53 (294)
                      .+.+.|+++.|++.|+++.   -.+.+..+|+..+++++ ..| .|++.
T Consensus        54 ~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~n  101 (244)
T 1qam_A           54 FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGN  101 (244)
T ss_dssp             EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred             eEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence            4667899999999998863   24667778899999885 456 44444

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=89.52  E-value=1.1  Score=41.32  Aligned_cols=72  Identities=19%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             cCCCcHHHHHHHHHc------C----CCcEEEEcc-CCCCCCCCCcccEEEecCcCccccc----ChHHHHHHHHhccCC
Q 041513           12 PLDVHEAQVQFALER------G----LPAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTS----YDGLYLMEIDRVLRP   76 (294)
Q Consensus        12 p~D~S~~mlq~A~er------g----v~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~----d~~~~L~Ei~RVLKP   76 (294)
                      -.|+.+++++.|++.      +    ..+.+...| ..-+--..++||+|+.-..= ....    ....+++.+.|.|+|
T Consensus       112 ~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~d-p~~~~~~L~t~eFy~~~~~~L~p  190 (294)
T 3o4f_A          112 MVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTD-PIGPGESLFTSAFYEGCKRCLNP  190 (294)
T ss_dssp             EEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCC-CCCTTCCSSCCHHHHHHHHTEEE
T ss_pred             EEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCC-cCCCchhhcCHHHHHHHHHHhCC
Confidence            348888999999863      1    235566666 44455567899999864321 1111    113699999999999


Q ss_pred             CcEEEEEc
Q 041513           77 GGYWVVSG   84 (294)
Q Consensus        77 GG~~vis~   84 (294)
                      ||.++.-.
T Consensus       191 ~Gv~v~q~  198 (294)
T 3o4f_A          191 GGIFVAQN  198 (294)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEec
Confidence            99999854

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=88.77  E-value=0.17  Score=47.99  Aligned_cols=71  Identities=15%  Similarity=0.122  Sum_probs=49.8

Q ss_pred             eeccCCCcHHHHHHHHHc-------------------CCC-cEEEEccCCCCCC-CCCcccEEEecCcCcccccChHHHH
Q 041513            9 SFAPLDVHEAQVQFALER-------------------GLP-AMVGLLSTYQLPY-PSRSFDVAHCSRCLVPWTSYDGLYL   67 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-------------------gv~-~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~~~d~~~~L   67 (294)
                      .+...|+++.+++.|+++                   ++. +.+...|+..+.. ..+.||+|++-    ++. ....++
T Consensus        73 ~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~lD----P~~-~~~~~l  147 (378)
T 2dul_A           73 EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLD----PFG-SPMEFL  147 (378)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEEC----CSS-CCHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhccCCCCEEEeC----CCC-CHHHHH
Confidence            366779999999999863                   444 5566666544321 14579999853    211 234789


Q ss_pred             HHHHhccCCCcEEEEEc
Q 041513           68 MEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        68 ~Ei~RVLKPGG~~vis~   84 (294)
                      ..+.+.|||||.++++.
T Consensus       148 ~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          148 DTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEEEe
Confidence            99999999999988874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=88.61  E-value=0.076  Score=61.64  Aligned_cols=43  Identities=16%  Similarity=0.281  Sum_probs=16.2

Q ss_pred             CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           41 PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        41 Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +|...+||+|+++.++ |-..+....|.++.++|||||++++..
T Consensus      1306 ~~~~~~ydlvia~~vl-~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1306 PGSLGKADLLVCNCAL-ATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             C-----CCEEEEECC---------------------CCEEEEEE
T ss_pred             cCCCCceeEEEEcccc-cccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            5567789999999999 766677789999999999999998865

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=88.48  E-value=0.48  Score=47.06  Aligned_cols=79  Identities=11%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             eeeeccCCCcHHHHHHHHHc----CCCcEE--EEccCCCC-CCCCCcccEEEec--CcCccccc----------------
Q 041513            7 TMSFAPLDVHEAQVQFALER----GLPAMV--GLLSTYQL-PYPSRSFDVAHCS--RCLVPWTS----------------   61 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~er----gv~~~~--~v~d~~~L-Pfpd~sFD~V~~s--~~l~h~~~----------------   61 (294)
                      ...+.+.|+++.+++.|+.+    |+...+  ..+|+... .+++..||+|++.  +....|..                
T Consensus       283 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~  362 (544)
T 3khk_A          283 QISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGE  362 (544)
T ss_dssp             GEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--
T ss_pred             hceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccc
Confidence            46789999999999999863    554333  44554433 3567899999995  22211211                


Q ss_pred             ----------ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           62 ----------YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        62 ----------d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                                ..-.++..+.+.|||||++++..|
T Consensus       363 ~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          363 KRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence                      011588999999999999999886

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=87.89  E-value=1.4  Score=38.28  Aligned_cols=68  Identities=7%  Similarity=-0.083  Sum_probs=45.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC----CcEEEEccCCC---------------CC--------C-CCCcccEEEecCcC
Q 041513            9 SFAPLDVHEAQVQFALER----GL----PAMVGLLSTYQ---------------LP--------Y-PSRSFDVAHCSRCL   56 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv----~~~~~v~d~~~---------------LP--------f-pd~sFD~V~~s~~l   56 (294)
                      .+.-.|.+++..+.|++.    |+    .+.+..+++..               ++        . ..+.||+|+.-.-.
T Consensus        53 ~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k  132 (202)
T 3cvo_A           53 HVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF  132 (202)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC
Confidence            445567888888888752    44    24555566432               22        2 24789999876532


Q ss_pred             cccccChHHHHHHHHhccCCCcEEEE
Q 041513           57 VPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        57 ~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                            ....+.++.+.|||||.+++
T Consensus       133 ------~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          133 ------RVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             ------HHHHHHHHHHHCSSCEEEEE
T ss_pred             ------chhHHHHHHHhcCCCeEEEE
Confidence                  12667778899999999965

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=87.21  E-value=0.26  Score=45.99  Aligned_cols=68  Identities=4%  Similarity=-0.029  Sum_probs=46.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCC--------------CcccEEEecCcCcccccChH-HH
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPS--------------RSFDVAHCSRCLVPWTSYDG-LY   66 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd--------------~sFD~V~~s~~l~h~~~d~~-~~   66 (294)
                      .+.+.|+|+.+++.|+++    ++ ++.+..+|+..+.  +..              ..||+|++.        .|. .+
T Consensus       237 ~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~d--------PPr~g~  308 (369)
T 3bt7_A          237 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD--------PPRSGL  308 (369)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEEC--------CCTTCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEEC--------cCcccc
Confidence            466779999999999864    45 4667666765431  222              379999753        221 24


Q ss_pred             HHHHHhccCCCcEEEEEc
Q 041513           67 LMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        67 L~Ei~RVLKPGG~~vis~   84 (294)
                      ..++.+.|+|+|.+++..
T Consensus       309 ~~~~~~~l~~~g~ivyvs  326 (369)
T 3bt7_A          309 DSETEKMVQAYPRILYIS  326 (369)
T ss_dssp             CHHHHHHHTTSSEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEE
Confidence            567888888999887765

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=87.13  E-value=0.41  Score=42.92  Aligned_cols=52  Identities=12%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             EEEEccCCC-CCCCCC----cccEEEec-CcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513           31 MVGLLSTYQ-LPYPSR----SFDVAHCS-RCLVPWTS-YDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        31 ~~~v~d~~~-LPfpd~----sFD~V~~s-~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+..+|+.. +|.-+.    .||+|+.- +.-..-.+ -...+|.++.|+|||||.|+.
T Consensus       153 ~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          153 DLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence            345566443 553332    79999973 22210001 013699999999999999985

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=86.71  E-value=0.83  Score=42.14  Aligned_cols=44  Identities=25%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CCCCcccEEEecC--cCc--------ccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           42 YPSRSFDVAHCSR--CLV--------PWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        42 fpd~sFD~V~~s~--~l~--------h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +++++||+|++.=  ...        .|.......|.|+.|+|+|||.+++...
T Consensus        54 l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           54 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            5688999999852  110        1111234688899999999999999764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=86.56  E-value=1.9  Score=42.81  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             eeeeccCCCcHHHHHHHHH----cCCC---cEEEEccCCCC--C-CCCCcccEEEec--CcCccccc-------------
Q 041513            7 TMSFAPLDVHEAQVQFALE----RGLP---AMVGLLSTYQL--P-YPSRSFDVAHCS--RCLVPWTS-------------   61 (294)
Q Consensus         7 t~s~ap~D~S~~mlq~A~e----rgv~---~~~~v~d~~~L--P-fpd~sFD~V~~s--~~l~h~~~-------------   61 (294)
                      ...+.+.|+++.+++.|+.    +|+.   ..+..+|+...  | ++...||+|++.  +.. .|..             
T Consensus       248 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~-~~~~~~~~~~d~rf~~~  326 (542)
T 3lkd_A          248 TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSA-KWSASSGFMDDPRFSPF  326 (542)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTC-CCCCCGGGGGSTTTGGG
T ss_pred             CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEEEecCCcCC-ccccchhhhhhhhhhhh
Confidence            3467888999999999976    3552   35666776555  4 567899999986  221 1210             


Q ss_pred             --------ChHHHHHHHHhccC-CCcEEEEEcCC
Q 041513           62 --------YDGLYLMEIDRVLR-PGGYWVVSGPP   86 (294)
Q Consensus        62 --------d~~~~L~Ei~RVLK-PGG~~vis~pp   86 (294)
                              ..-.++..+.+.|| |||++.+..|.
T Consensus       327 G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          327 GKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             SSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             hhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence                    01238999999999 99999988863

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=86.01  E-value=0.56  Score=44.75  Aligned_cols=71  Identities=10%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCC-C-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQL-P-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY   79 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~L-P-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~   79 (294)
                      .+...|+++.+++.+++.    ++.   +.+...|+..+ . ...+.||+|++--    +. .+..++..+.+.|+|||+
T Consensus        79 ~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP----~g-~~~~~l~~a~~~Lk~gGl  153 (392)
T 3axs_A           79 KAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP----FG-TPVPFIESVALSMKRGGI  153 (392)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC----SS-CCHHHHHHHHHHEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC----Cc-CHHHHHHHHHHHhCCCCE
Confidence            467789999999999874    553   55666664332 1 1246799998753    11 234689999999999999


Q ss_pred             EEEEc
Q 041513           80 WVVSG   84 (294)
Q Consensus        80 ~vis~   84 (294)
                      ++++.
T Consensus       154 l~~t~  158 (392)
T 3axs_A          154 LSLTA  158 (392)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88875

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=82.62  E-value=2  Score=40.37  Aligned_cols=76  Identities=16%  Similarity=0.072  Sum_probs=48.5

Q ss_pred             eccCCCcHHHHHHHHHc----CC-------CcEEEEccCCCCC-CCCCcccEEE----ecCc---Ccc--------ccc-
Q 041513           10 FAPLDVHEAQVQFALER----GL-------PAMVGLLSTYQLP-YPSRSFDVAH----CSRC---LVP--------WTS-   61 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-------~~~~~v~d~~~LP-fpd~sFD~V~----~s~~---l~h--------~~~-   61 (294)
                      +...|+|+.-++..+++    +.       .+.+...|+..++ +..+.||.|+    ||..   ...        +.. 
T Consensus       175 l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~  254 (359)
T 4fzv_A          175 LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKK  254 (359)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHH
Confidence            55679998877766542    22       3455556666553 4568899998    4541   111        110 


Q ss_pred             -------ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           62 -------YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        62 -------d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                             -...+|....+.|||||+++.|+=
T Consensus       255 ~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          255 ERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             HHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence                   012477788899999999999873

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=80.08  E-value=1.4  Score=36.16  Aligned_cols=46  Identities=9%  Similarity=0.140  Sum_probs=33.0

Q ss_pred             CCCCCCCCCcccEEEecCcCc-ccccChHHHHHHHHhccCCCcEEEE
Q 041513           37 TYQLPYPSRSFDVAHCSRCLV-PWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        37 ~~~LPfpd~sFD~V~~s~~l~-h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      ....-+|+++||.|+-.---- +...-+..++..+.+.|||||.|..
T Consensus        50 ~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           50 DGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             HTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             cCcccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence            455678899999998532111 1122345899999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.004

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 38  YQLPYPSRSFDVAHCSRCL----VPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSY 93
                     D    + CL        S+    L  I  +LRPGG+ ++ G         
Sbjct: 149 GAGSPAPLPADALVSAFCLEAVSPDLASFQR-ALDHITTLLRPGGHLLLIGALEESWYLA 207

Query: 94  RGWERDAKDLQKEQI 108
                    + +E++
Sbjct: 208 GEARLTVVPVSEEEV 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.3
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.27
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.24
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.19
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.15
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.08
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.05
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.98
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.91
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.9
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.87
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.83
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.82
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.81
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.77
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.64
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.61
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.41
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.38
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.36
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.25
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.24
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.23
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.2
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.17
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.16
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.12
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.12
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.12
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.08
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.05
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.04
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.96
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.92
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.9
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.86
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.85
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.78
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.74
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.63
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.51
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.46
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.41
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.25
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.18
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.92
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	96.8
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.39
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.31
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	95.84
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.84
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	94.98
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.55
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.54
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	93.94
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	93.78
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.13
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	92.72
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	92.01
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	90.74
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	90.46
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	90.26
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	90.07
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	89.07
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	87.98
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	87.7
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	87.55
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	87.28
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	87.24
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	87.12
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	86.56
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	85.68
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	84.76
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	83.08
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	82.88
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	82.13
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	81.24
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	80.27

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=2.1e-12  Score=112.09  Aligned_cols=76  Identities=22%  Similarity=0.318  Sum_probs=66.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    ++ .+.+.+++++.+||++++||+|+|..++ ||..++..+|+|+.|+|||||+++++
T Consensus        40 ~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          40 ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA-HHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeecee-ecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            467889999999999765    44 4677788999999999999999999999 55677889999999999999999997


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       119 ~~  120 (234)
T d1xxla_         119 DH  120 (234)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.27  E-value=2e-12  Score=110.88  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=64.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|+.|++.|+++    +. .+.+.+++.+.+||++++||+|+|..++ |+.+++..+|+|+.|+|||||+|++.
T Consensus        39 ~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l-~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          39 KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA-HHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc-cccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            456779999999999764    33 4678889999999999999999999999 55667889999999999999999997


Q ss_pred             c
Q 041513           84 G   84 (294)
Q Consensus        84 ~   84 (294)
                      .
T Consensus       118 ~  118 (231)
T d1vl5a_         118 D  118 (231)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=2.3e-12  Score=110.82  Aligned_cols=76  Identities=22%  Similarity=0.351  Sum_probs=65.5

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|++++... +..++++.+||++++||+|+|...+.|+..++..+|+|+.|+|||||+|+++.+
T Consensus        66 ~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          66 EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            5678899999999999998654 445789999999999999998754436677888999999999999999999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=6.2e-12  Score=106.67  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      .+.+.|+|++|++.|+++    +..+.+.++++..+|+++++||+|+|..+++|+. .+...+|+|+.|+|||||+|++.
T Consensus        61 ~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1          61 EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            567789999999999875    4567777789999999999999999999996653 24557999999999999999987


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .+
T Consensus       141 ~~  142 (226)
T d1ve3a1         141 FT  142 (226)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=1.5e-11  Score=104.15  Aligned_cols=72  Identities=26%  Similarity=0.297  Sum_probs=64.2

Q ss_pred             ccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           11 APLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        11 ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .++|+|+.|++.|++++  +.+.+++.+.+|+++++||+|+|..+|+| ..++..+|+|+.|+|||||++++..+
T Consensus        58 ~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h-~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          58 IGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICF-VDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             EEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGG-SSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEeCChhhcccccccc--ccccccccccccccccccccccccccccc-ccccccchhhhhhcCCCCceEEEEec
Confidence            35799999999999986  45677889999999999999999999955 46788999999999999999999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.08  E-value=5.4e-11  Score=106.00  Aligned_cols=76  Identities=24%  Similarity=0.291  Sum_probs=66.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++    |+  .+.+.+++++.+||++++||+|+|..+++|+ .++..+|+|+.|+|||||+|++
T Consensus        92 ~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~-~d~~~~l~~~~~~LkpgG~l~~  170 (282)
T d2o57a1          92 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAI  170 (282)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhc-cCHHHHHHHHHHhcCCCcEEEE
Confidence            567889999999999875    44  4677888999999999999999999999665 5777999999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       171 ~~~  173 (282)
T d2o57a1         171 TDP  173 (282)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            863

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.7e-11  Score=105.95  Aligned_cols=69  Identities=25%  Similarity=0.367  Sum_probs=62.4

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|+.|++.|+++...+.+.+++++.+||++++||+|++.++++|        ++|+.|+|||||+|+++.|
T Consensus       110 ~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         110 TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--------HHHHHHHhCCCcEEEEEee
Confidence            45677999999999999888888989999999999999999999888743        6899999999999999986

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.7e-10  Score=100.46  Aligned_cols=76  Identities=17%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ..+.+.|+|+.|++.|+++    |+.  +.+.++|.+.+ +++++||+|+|..+++|+ .++..+++|++|+|||||+++
T Consensus        57 ~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~-~d~~~~l~~~~r~LkPGG~l~  134 (245)
T d1nkva_          57 ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIML  134 (245)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEE
T ss_pred             CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEehhhcc-CCHHHHHHHHHHHcCcCcEEE
Confidence            3567889999999999875    553  67888888887 578999999999999655 466699999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       135 i~~~  138 (245)
T d1nkva_         135 IGEP  138 (245)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.91  E-value=5e-10  Score=100.25  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             eccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+.|+|+.|++.|+++    +.++.+.+.|+..+++++ +||+|+|..++ |+..++..+|+++.|+|||||++++..+
T Consensus        55 v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          55 YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAFL-LHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESCG-GGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehhh-hcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            55679999999999875    345677788999999864 79999999999 5566788999999999999999999875

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.9e-10  Score=97.71  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=78.1

Q ss_pred             eeccCCCcHHHHHHHHHcC----C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG----L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++||+.|+++.    . ...+.+++++.+++++++||+|+|..+++|+.++ ...+|+++.|+|||||+|++
T Consensus        85 ~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i  164 (222)
T d2ex4a1          85 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI  164 (222)
T ss_dssp             EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEE
Confidence            4667899999999999863    2 3467788999999999999999999999775432 23699999999999999999


Q ss_pred             EcCCCC----ccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecc
Q 041513           83 SGPPIS----WKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAER  125 (294)
Q Consensus        83 s~pp~~----~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~  125 (294)
                      +.+...    +......+.++       .+.+.++++.-+++.+...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~aGf~ii~~~  204 (222)
T d2ex4a1         165 KDNMAQEGVILDDVDSSVCRD-------LDVVRRIICSAGLSLLAEE  204 (222)
T ss_dssp             EEEEBSSSEEEETTTTEEEEB-------HHHHHHHHHHTTCCEEEEE
T ss_pred             EEcccccccccccCCceeeCC-------HHHHHHHHHHcCCEEEEEE
Confidence            863111    00000011122       2346667777777766543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=6.5e-10  Score=96.02  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=62.4

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc--cChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--SYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++||+.|+++    +..+.+.+++++.++++ +.||+|+|.+..+++.  ++...+|+++.|+|||||+|++
T Consensus        65 ~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1          65 EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            567889999999999875    56788888999999997 5899999986433443  2345799999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ..+
T Consensus       144 ~~~  146 (251)
T d1wzna1         144 DFP  146 (251)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.83  E-value=1.4e-09  Score=95.18  Aligned_cols=77  Identities=23%  Similarity=0.331  Sum_probs=62.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCC-CCCcccEEEecCcCcccccCh---HHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPY-PSRSFDVAHCSRCLVPWTSYD---GLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~~~d~---~~~L~Ei~RVLKPGG   78 (294)
                      .+.+.|+|+.||+.|++|    +.  .+.+.++|+...++ .+++||+|+|.++++|...+.   ..+|+++.|+|||||
T Consensus        49 ~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG  128 (252)
T d1ri5a_          49 EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG  128 (252)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCC
Confidence            467889999999999875    22  46677888877776 477999999999996655433   369999999999999


Q ss_pred             EEEEEcC
Q 041513           79 YWVVSGP   85 (294)
Q Consensus        79 ~~vis~p   85 (294)
                      +|+++.+
T Consensus       129 ~~i~~~~  135 (252)
T d1ri5a_         129 YFIMTVP  135 (252)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=2e-09  Score=92.35  Aligned_cols=78  Identities=15%  Similarity=0.057  Sum_probs=58.9

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      ..+.+.|+|++||+.|+++    +....+......-++++.+.||+|+|+.+++|.. +++..+|+|++|+|||||.|++
T Consensus        66 ~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_          66 VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence            3567889999999999875    2332332233344556667899999999995553 4566899999999999999999


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      +.+
T Consensus       146 ~~~  148 (225)
T d1im8a_         146 SEK  148 (225)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.81  E-value=1.6e-09  Score=93.33  Aligned_cols=75  Identities=16%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             eeccCCCcHHHHHHHHHcCC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHH-hccCCCcEEEEEcC
Q 041513            9 SFAPLDVHEAQVQFALERGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID-RVLRPGGYWVVSGP   85 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~-RVLKPGG~~vis~p   85 (294)
                      .+.+.|+|++|++.|+++.. .+.+..++.+.+++ +++||+|+|..+++| .+++..+|.|+. |+|||||+++++.|
T Consensus        44 ~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh-~~d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          44 DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEH-IDDPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGG-CSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEe-cCCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            46677999999999998754 45666677777776 588999999999955 568889999998 89999999999875

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.77  E-value=1.9e-09  Score=95.30  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             eeccCCCcHHHHHHHHHcC--CC-cEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERG--LP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|+|+.|++.|+++.  .+ +.+.+.+.+.+++++++||+|+|..+++|+.++ ...+|+++.|+|||||+|++..
T Consensus       118 ~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         118 TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            3556799999999999863  33 456778899999999999999999999776543 2368999999999999999976


Q ss_pred             C
Q 041513           85 P   85 (294)
Q Consensus        85 p   85 (294)
                      +
T Consensus       198 ~  198 (254)
T d1xtpa_         198 N  198 (254)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.64  E-value=1.7e-08  Score=87.26  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+.+.|.|++||+.|+++    +.++.+.++|...++++ ++||+|+|.. ++.|+.  ++...+|+++.|.|||||.|+
T Consensus        61 ~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          61 NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            466889999999999875    56788888898888874 6899999874 554443  234469999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +..+
T Consensus       140 ~~~~  143 (246)
T d1y8ca_         140 FDIN  143 (246)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.1e-09  Score=91.21  Aligned_cols=77  Identities=10%  Similarity=-0.032  Sum_probs=59.7

Q ss_pred             eeeccCCCcHHHHHHHHHcC-----CC-cEE--EEccCC------CCCCCCCcccEEEecCcCcccccChHHHHHHHHhc
Q 041513            8 MSFAPLDVHEAQVQFALERG-----LP-AMV--GLLSTY------QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRV   73 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg-----v~-~~~--~v~d~~------~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RV   73 (294)
                      ..+.+.|+|+.|++.|+++-     ++ +.+  ...+.+      ..++++++||+|+|.+++ |+.+++..+|+++.|+
T Consensus        71 ~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l-~~~~d~~~~l~~l~~~  149 (280)
T d1jqea_          71 INNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML-YYVKDIPATLKFFHSL  149 (280)
T ss_dssp             EEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCG-GGCSCHHHHHHHHHHT
T ss_pred             eEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccce-ecCCCHHHHHHHHHhh
Confidence            45678899999999998751     22 222  222222      357889999999999999 5667888999999999


Q ss_pred             cCCCcEEEEEcC
Q 041513           74 LRPGGYWVVSGP   85 (294)
Q Consensus        74 LKPGG~~vis~p   85 (294)
                      |||||++++..+
T Consensus       150 LkpgG~l~i~~~  161 (280)
T d1jqea_         150 LGTNAKMLIIVV  161 (280)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEe
Confidence            999999999763

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.61  E-value=2.4e-08  Score=83.89  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=60.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|++|++.|+++    +++ +.+.+.|...+++ +++||+|+|..+++|..... ..+++++.|+|||||++++
T Consensus        54 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  132 (198)
T d2i6ga1          54 DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI  132 (198)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            466789999999998753    555 4566678888876 68899999999996654332 3699999999999999999


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       133 ~~  134 (198)
T d2i6ga1         133 VA  134 (198)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.8e-08  Score=87.02  Aligned_cols=77  Identities=16%  Similarity=0.025  Sum_probs=57.7

Q ss_pred             eeccCCCcHHHHHHHHHcC--CCc---------------------------------EEEE----ccCCCCCCCCCcccE
Q 041513            9 SFAPLDVHEAQVQFALERG--LPA---------------------------------MVGL----LSTYQLPYPSRSFDV   49 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~~---------------------------------~~~v----~d~~~LPfpd~sFD~   49 (294)
                      .+.+.|+|+.||+.|+++.  ...                                 ....    .+....|+++++||+
T Consensus        76 ~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  155 (257)
T d2a14a1          76 DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADC  155 (257)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEE
T ss_pred             cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccE
Confidence            5788899999999998751  000                                 0011    123345788999999


Q ss_pred             EEecCcCccccc---ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           50 AHCSRCLVPWTS---YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        50 V~~s~~l~h~~~---d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      |++.++++|...   +...+++++.|+|||||+|+++..
T Consensus       156 i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         156 VLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             EEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence            999999977653   344699999999999999999873

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.38  E-value=2.1e-07  Score=75.98  Aligned_cols=77  Identities=6%  Similarity=-0.003  Sum_probs=59.3

Q ss_pred             eeeccCCCcHHHHHHHHHcC-----------------CCcEEEEccCCCCC-CCCCcccEEEecCcCcccccC-hHHHHH
Q 041513            8 MSFAPLDVHEAQVQFALERG-----------------LPAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSY-DGLYLM   68 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg-----------------v~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d-~~~~L~   68 (294)
                      ..+.+.|+|+.||+.|+++.                 ....+...+...++ ++..+||+|+++.+++|..++ ...+++
T Consensus        43 ~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~  122 (201)
T d1pjza_          43 YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQ  122 (201)
T ss_dssp             CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHH
Confidence            35678899999999999852                 22345556666665 456889999999999665432 347999


Q ss_pred             HHHhccCCCcEEEEEc
Q 041513           69 EIDRVLRPGGYWVVSG   84 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~   84 (294)
                      ++.|+|||||++++..
T Consensus       123 ~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_         123 HLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHHHHSCSEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEE
Confidence            9999999999988865

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.5e-07  Score=79.47  Aligned_cols=76  Identities=16%  Similarity=0.080  Sum_probs=60.7

Q ss_pred             eeccCCCcHHHHHHHHHcC----------------------CCcEEEEccCCCC-CCCCCcccEEEecCcCcccccCh-H
Q 041513            9 SFAPLDVHEAQVQFALERG----------------------LPAMVGLLSTYQL-PYPSRSFDVAHCSRCLVPWTSYD-G   64 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----------------------v~~~~~v~d~~~L-Pfpd~sFD~V~~s~~l~h~~~d~-~   64 (294)
                      .+.+.|+|+.+|+.|+++.                      ..+.+.++|...+ +...+.||+|+...+++|...+. .
T Consensus        69 ~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~  148 (229)
T d2bzga1          69 SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRK  148 (229)
T ss_dssp             EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHH
T ss_pred             cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhH
Confidence            5778899999999998752                      2355666775555 56789999999999997776443 4


Q ss_pred             HHHHHHHhccCCCcEEEEEc
Q 041513           65 LYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        65 ~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+++++.|+|||||++++..
T Consensus       149 ~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         149 CYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             HHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHhhcCCcceEEEEE
Confidence            69999999999999988865

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=5.6e-07  Score=77.07  Aligned_cols=75  Identities=11%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCCCcccEEEecCcCcccccCh--------HHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSYD--------GLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d~--------~~~L~Ei~RV   73 (294)
                      .+.+.|+++.+++.|.++    ++ ++.+..+|+..+.  |+++++|.|++.+.. +|....        ..+|.++.|+
T Consensus        55 ~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~-P~~k~~h~k~Rl~~~~~l~~~~r~  133 (204)
T d2fcaa1          55 NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD-PWPKKRHEKRRLTYSHFLKKYEEV  133 (204)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-CCCSGGGGGGSTTSHHHHHHHHHH
T ss_pred             cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc-ccchhhhcchhhhHHHHHHHHHHh
Confidence            567889999999998653    55 4666777887776  899999999998887 665432        3699999999


Q ss_pred             cCCCcEEEEEc
Q 041513           74 LRPGGYWVVSG   84 (294)
Q Consensus        74 LKPGG~~vis~   84 (294)
                      |||||.|++.+
T Consensus       134 LkpgG~l~i~T  144 (204)
T d2fcaa1         134 MGKGGSIHFKT  144 (204)
T ss_dssp             HTTSCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999999975

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=8.4e-07  Score=79.06  Aligned_cols=90  Identities=17%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             eccCCCcHHHHHHHHHc------C--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513           10 FAPLDVHEAQVQFALER------G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er------g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      +...|+++++++.|+++      +  ....+.+.|....+|++++||.|++     |. .+|..++.++.|+|||||+++
T Consensus       124 V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dl-p~P~~~l~~~~~~LkpGG~lv  197 (264)
T d1i9ga_         124 VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DM-LAPWEVLDAVSRLLVAGGVLM  197 (264)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ES-SCGGGGHHHHHHHEEEEEEEE
T ss_pred             EEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE-----ec-CCHHHHHHHHHhccCCCCEEE
Confidence            44569999999999873      1  2456777888889999999999985     33 466689999999999999999


Q ss_pred             EEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEe
Q 041513           82 VSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKK  121 (294)
Q Consensus        82 is~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~  121 (294)
                      +..|-+                .+.++.++.+.....|..
T Consensus       198 ~~~P~i----------------~Qv~~~~~~l~~~~~f~~  221 (264)
T d1i9ga_         198 VYVATV----------------TQLSRIVEALRAKQCWTE  221 (264)
T ss_dssp             EEESSH----------------HHHHHHHHHHHHHSSBCC
T ss_pred             EEeCcc----------------ChHHHHHHHHHHcCCeec
Confidence            988732                355666666654555644

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.4e-07  Score=81.31  Aligned_cols=75  Identities=13%  Similarity=0.011  Sum_probs=55.2

Q ss_pred             eeccCCCcHHHHHHHHHcC----CCcEEEEcc--CCCCCCCCCcccEEE-----ecCcCcccccChHHHHHHHHhccCCC
Q 041513            9 SFAPLDVHEAQVQFALERG----LPAMVGLLS--TYQLPYPSRSFDVAH-----CSRCLVPWTSYDGLYLMEIDRVLRPG   77 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg----v~~~~~v~d--~~~LPfpd~sFD~V~-----~s~~l~h~~~d~~~~L~Ei~RVLKPG   77 (294)
                      ++..+|+|+.|++.|+++.    ..+.....+  ....++++++||.|+     +...++|+ .+...+++|+.|+||||
T Consensus        78 ~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpG  156 (229)
T d1zx0a1          78 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPG  156 (229)
T ss_dssp             EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEE
T ss_pred             eEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCC
Confidence            5677899999999998863    233344443  334578899999987     35555443 35568999999999999


Q ss_pred             cEEEEEc
Q 041513           78 GYWVVSG   84 (294)
Q Consensus        78 G~~vis~   84 (294)
                      |+|++..
T Consensus       157 G~~~~~~  163 (229)
T d1zx0a1         157 GVLTYCN  163 (229)
T ss_dssp             EEEEECC
T ss_pred             cEEEEEe
Confidence            9998854

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.20  E-value=6.8e-07  Score=74.88  Aligned_cols=76  Identities=16%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      ++...|+|+.+++.|+++    ++   .+.+...|... ++++++||+|+|...+++..+....+++++.|+|||||+++
T Consensus        76 ~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~  154 (194)
T d1dusa_          76 STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW  154 (194)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEE
Confidence            345569999999999874    33   35666667655 67899999999998884433334578999999999999998


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      +...
T Consensus       155 i~~~  158 (194)
T d1dusa_         155 VVIQ  158 (194)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1.8e-07  Score=83.05  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=53.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-----CcEEEEccCC----CCCCCCCcccEEEecC-cCccccc------ChHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL-----PAMVGLLSTY----QLPYPSRSFDVAHCSR-CLVPWTS------YDGLYLM   68 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-----~~~~~v~d~~----~LPfpd~sFD~V~~s~-~l~h~~~------d~~~~L~   68 (294)
                      .+.+.|+|++||+.|+++    +.     ...+..++..    .+|+ .++||+|+|.. ++.|+.+      +...+|+
T Consensus        80 ~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~  158 (292)
T d1xvaa_          80 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALK  158 (292)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHH
T ss_pred             eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHH
Confidence            567889999999999864    22     1223233321    2333 56899999865 6766543      2346999


Q ss_pred             HHHhccCCCcEEEEEcC
Q 041513           69 EIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~p   85 (294)
                      ++.|+|||||+|++..+
T Consensus       159 ~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         159 NIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHHTEEEEEEEEEEEE
T ss_pred             HHHHHcCcCcEEEEeec
Confidence            99999999999999764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.6e-07  Score=80.39  Aligned_cols=47  Identities=23%  Similarity=0.227  Sum_probs=38.9

Q ss_pred             CCCCCCCcccEEEecCcCcccccC---hHHHHHHHHhccCCCcEEEEEcC
Q 041513           39 QLPYPSRSFDVAHCSRCLVPWTSY---DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        39 ~LPfpd~sFD~V~~s~~l~h~~~d---~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      ..+++.++||+|+|.+|++|...+   ...+++++.|+|||||+|++...
T Consensus       150 ~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         150 AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence            345667899999999999776544   35699999999999999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=1.7e-06  Score=77.22  Aligned_cols=74  Identities=9%  Similarity=0.017  Sum_probs=56.7

Q ss_pred             eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..+.++|+|++|++.|+++    ++.  +.+...+...+   +++||.|++..+++|+... -..+|+++.|+|||||++
T Consensus        76 ~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~  152 (280)
T d2fk8a1          76 VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM  152 (280)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred             eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceE
Confidence            3577889999999999875    443  33333444433   5789999999999887643 357999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++..
T Consensus       153 ~i~~  156 (280)
T d2fk8a1         153 TVQS  156 (280)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9854

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=3.5e-07  Score=80.96  Aligned_cols=71  Identities=17%  Similarity=0.146  Sum_probs=55.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++    ++...+.+.+... ++++++||+|++.... |   ....++.++.|+|||||+|++|+
T Consensus       144 ~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~-~---~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         144 KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA-E---LHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH-H---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccc-c---cHHHHHHHHHHhcCCCcEEEEEe
Confidence            456789999999999863    6777777766443 4678899999987554 2   23468899999999999999986

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=1.6e-06  Score=78.08  Aligned_cols=73  Identities=10%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccC--------hHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RVL   74 (294)
                      .+.++++|++|++.|+++    ++.  +.+...   ..++++++||.|+|..++.|..+.        -..+++++.|+|
T Consensus        86 ~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~---d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~L  162 (291)
T d1kpia_          86 NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ---GWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT  162 (291)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC---CGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTS
T ss_pred             ceeeccchHHHHHHHHHHHHhhccchhhhhhhh---cccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhC
Confidence            566789999999998765    443  333333   345778999999999999998642        357999999999


Q ss_pred             CCCcEEEEEc
Q 041513           75 RPGGYWVVSG   84 (294)
Q Consensus        75 KPGG~~vis~   84 (294)
                      ||||++++..
T Consensus       163 kpgG~~~l~~  172 (291)
T d1kpia_         163 PDDGRMLLHT  172 (291)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCCceEEEE
Confidence            9999999864

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.08  E-value=2.8e-06  Score=73.83  Aligned_cols=75  Identities=11%  Similarity=0.049  Sum_probs=56.8

Q ss_pred             eeccCCCcHHHHHHHHHcC--C-CcEEEEcc-CCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERG--L-PAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v-~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++.  . .......+ ....++.+..||++++...+ |+.+++..++.++.|+|||||+++++.
T Consensus       100 ~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         100 IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV-AQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc-cchHHHHHHHHHHHHhcccCceEEEEe
Confidence            4677899999999998763  2 23344444 44445778888888777666 556677789999999999999999986

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.05  E-value=1.5e-06  Score=74.43  Aligned_cols=75  Identities=9%  Similarity=-0.083  Sum_probs=54.6

Q ss_pred             eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCcccEEEecC-cCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFDVAHCSR-CLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD~V~~s~-~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+.+.|+|+.|++.|+++.   -.+.+...++...+.+...+|.|.+.+ .+ +...+...+++|+.|+|||||+++++.
T Consensus        82 ~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_          82 IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-AQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc-cChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            4678899999999987642   245566677777766666666554332 34 334456689999999999999999975

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.04  E-value=4.9e-06  Score=70.98  Aligned_cols=75  Identities=16%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC--CCCCcccEEEecCcCcccccCh--------HHHHHHHHhc
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSYD--------GLYLMEIDRV   73 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d~--------~~~L~Ei~RV   73 (294)
                      .+.+.|+++.++..|.++    ++ ++.+..+++..+.  |+++++|.|++.+.- +|....        ..+|.++.|+
T Consensus        57 ~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd-Pw~K~~h~krRl~~~~~l~~~~~~  135 (204)
T d1yzha1          57 NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD-PWPKKRHEKRRLTYKTFLDTFKRI  135 (204)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-CCCSGGGGGGSTTSHHHHHHHHHH
T ss_pred             ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc-cccchhhhhhhhhHHHHHHHHHHh
Confidence            567789999999998653    55 4667777887775  899999999988776 665432        3799999999


Q ss_pred             cCCCcEEEEEc
Q 041513           74 LRPGGYWVVSG   84 (294)
Q Consensus        74 LKPGG~~vis~   84 (294)
                      |||||.|++.+
T Consensus       136 LkpgG~l~i~T  146 (204)
T d1yzha1         136 LPENGEIHFKT  146 (204)
T ss_dssp             SCTTCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999999865

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=6.3e-06  Score=73.79  Aligned_cols=74  Identities=12%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEE
Q 041513            8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYW   80 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~   80 (294)
                      ..+.++++|++|++.|+++    |+  .+.+..+|...+|   ++||.|++..++.|+.. +-..+++++.|+|||||.+
T Consensus        86 ~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~  162 (285)
T d1kpga_          86 VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM  162 (285)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred             cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcE
Confidence            3677789999999999875    32  3455566666554   68999999999999754 3458999999999999999


Q ss_pred             EEEc
Q 041513           81 VVSG   84 (294)
Q Consensus        81 vis~   84 (294)
                      ++..
T Consensus       163 ~l~~  166 (285)
T d1kpga_         163 LLHT  166 (285)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9843

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.92  E-value=2.2e-06  Score=74.56  Aligned_cols=72  Identities=26%  Similarity=0.342  Sum_probs=51.2

Q ss_pred             ccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEEE
Q 041513           11 APLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis   83 (294)
                      ...|+ ++|++.|+++    ++  .+.+...|... +.+ .+||+|+++.++|||.++. ..+|+++.|+|||||+|++.
T Consensus       108 ~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         108 TVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             EEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence            34566 4577777653    43  35566666433 333 5699999999997775432 36899999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      ..
T Consensus       185 e~  186 (253)
T d1tw3a2         185 ER  186 (253)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.90  E-value=5.6e-06  Score=68.73  Aligned_cols=73  Identities=16%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|.+++|++.|+++    ++  .+.+.++++..++++...||.|++.....|    ...++.++.+.|||||++++
T Consensus        57 ~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_          57 RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEE
Confidence            345679999999999874    44  466777888888888999999999877633    34799999999999999998


Q ss_pred             EcC
Q 041513           83 SGP   85 (294)
Q Consensus        83 s~p   85 (294)
                      ...
T Consensus       133 ~~~  135 (186)
T d1l3ia_         133 TAI  135 (186)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=1.2e-05  Score=70.85  Aligned_cols=69  Identities=10%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             eccCCCcHHHHHHHHHc----C-C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513           10 FAPLDVHEAQVQFALER----G-L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----g-v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      +...|.++++++.|+++    + . .+.+...|.... +++++||+|++.      ..++..++.++.|+|||||+|++.
T Consensus       113 V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld------~p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         113 LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD------IPDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC------CSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec------CCchHHHHHHHHHhcCCCceEEEE
Confidence            45569999999999874    2 2 456666776654 678999999863      235558999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .|
T Consensus       186 ~P  187 (250)
T d1yb2a1         186 LP  187 (250)
T ss_dssp             ES
T ss_pred             eC
Confidence            87

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.2e-06  Score=77.99  Aligned_cols=75  Identities=15%  Similarity=0.050  Sum_probs=57.3

Q ss_pred             eeccCCCcHHHHHHHHHc-----------C---CCcEEEEccCCCCCCCCCccc--EEEecCcCcccccChHHHHHHHHh
Q 041513            9 SFAPLDVHEAQVQFALER-----------G---LPAMVGLLSTYQLPYPSRSFD--VAHCSRCLVPWTSYDGLYLMEIDR   72 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er-----------g---v~~~~~v~d~~~LPfpd~sFD--~V~~s~~l~h~~~d~~~~L~Ei~R   72 (294)
                      .+.+.|+|+.|++.|++.           |   .++.+.++|...+||.+..||  +|++ ..+.|+ .+...+|.|+.|
T Consensus       177 ~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~-~~~~f~-~~~~~~l~e~~r  254 (328)
T d1nw3a_         177 HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFV-NNFAFG-PEVDHQLKERFA  254 (328)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEE-CCTTTC-HHHHHHHHHHHT
T ss_pred             eEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcceEEEE-cceecc-hHHHHHHHHHHH
Confidence            356789999999998653           1   357788889999999888775  4554 455343 456689999999


Q ss_pred             ccCCCcEEEEEcC
Q 041513           73 VLRPGGYWVVSGP   85 (294)
Q Consensus        73 VLKPGG~~vis~p   85 (294)
                      +|||||+++...+
T Consensus       255 ~LKpGg~iv~~~~  267 (328)
T d1nw3a_         255 NMKEGGRIVSSKP  267 (328)
T ss_dssp             TCCTTCEEEESSC
T ss_pred             hCCCCcEEEEecc
Confidence            9999999988653

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.78  E-value=7.9e-06  Score=71.45  Aligned_cols=74  Identities=27%  Similarity=0.321  Sum_probs=51.8

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-C-cEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL-P-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v   81 (294)
                      .+...|+ +++++.|+++    ++ . +.+...+.. .|+| ..||+|++.++||||.++. ..+|+++.|+|||||+|+
T Consensus       107 ~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~-~~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~ll  183 (256)
T d1qzza2         107 RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFF-KPLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL  183 (256)
T ss_dssp             EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecc-cccc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeE
Confidence            3445687 5678777653    43 2 344444433 2555 4599999999998876443 358999999999999999


Q ss_pred             EEcC
Q 041513           82 VSGP   85 (294)
Q Consensus        82 is~p   85 (294)
                      |...
T Consensus       184 I~d~  187 (256)
T d1qzza2         184 VLDR  187 (256)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.74  E-value=9e-06  Score=69.40  Aligned_cols=68  Identities=13%  Similarity=0.069  Sum_probs=53.7

Q ss_pred             eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +...|+++++++.|+++    ++ +..+.+.+....++.+++||+|++..++.|..       .++.++|||||++++..
T Consensus       103 V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         103 VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred             EEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence            55679999999999875    34 45566677778888889999999999985432       35778999999999854

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.63  E-value=2.4e-05  Score=65.59  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             eeeccCCCcHHHHHHHHHc--------CCC----------------------------cEEEEcc-CCCCCCCCCcccEE
Q 041513            8 MSFAPLDVHEAQVQFALER--------GLP----------------------------AMVGLLS-TYQLPYPSRSFDVA   50 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~er--------gv~----------------------------~~~~v~d-~~~LPfpd~sFD~V   50 (294)
                      +.|-+.|+|+.+|+.|++-        +++                            +.+...+ ....+.+.+.||+|
T Consensus        57 ~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI  136 (193)
T d1af7a2          57 WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAI  136 (193)
T ss_dssp             EEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEE
T ss_pred             eEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEE
Confidence            4688899999999999742        110                            0111122 12223456889999


Q ss_pred             EecCcCcccccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513           51 HCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        51 ~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +|..+|+++.+.. ..+++.+++.|+|||+|++..
T Consensus       137 ~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         137 FCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             EECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             EeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9999997665432 469999999999999988754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=8.5e-05  Score=65.55  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             eccCCCcHHHHHHHHHc----CC-CcE-EEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513           10 FAPLDVHEAQVQFALER----GL-PAM-VGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS   83 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-~~~-~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis   83 (294)
                      +...|.|++|++.|+++    ++ ... +...+ -...++...||.|+.     | ..++..++.++.|+|||||+|++.
T Consensus       131 V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d-~~~~~~~~~~D~V~~-----d-~p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         131 VFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-ISEGFDEKDVDALFL-----D-VPDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-GGGCCSCCSEEEEEE-----C-CSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHhccccCcEEEecc-ccccccccceeeeEe-----c-CCCHHHHHHHHHhhcCCCCEEEEE
Confidence            45679999999999874    33 233 33333 234577888999863     3 346668999999999999999998


Q ss_pred             cC
Q 041513           84 GP   85 (294)
Q Consensus        84 ~p   85 (294)
                      .|
T Consensus       204 ~P  205 (266)
T d1o54a_         204 CP  205 (266)
T ss_dssp             ES
T ss_pred             eC
Confidence            87

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0001  Score=66.93  Aligned_cols=92  Identities=15%  Similarity=0.025  Sum_probs=60.5

Q ss_pred             eccCCCcHHHHHHHHHcC----------------CCcEEEEccCCCC--CCCCCcccEEEecCcCcccccChHHHHHHHH
Q 041513           10 FAPLDVHEAQVQFALERG----------------LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYDGLYLMEID   71 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg----------------v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~   71 (294)
                      +...|+++++++.|+++-                -.+.+...|....  .+++.+||.|+.-     . .+|..++.++.
T Consensus       126 V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD-----~-p~P~~~l~~~~  199 (324)
T d2b25a1         126 VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD-----M-LNPHVTLPVFY  199 (324)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEEC-----S-SSTTTTHHHHG
T ss_pred             EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeec-----C-cCHHHHHHHHH
Confidence            455699999999998641                1355666665544  3567899999852     2 24447999999


Q ss_pred             hccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHH-hhceEeee
Q 041513           72 RVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLAT-RLCWKKIA  123 (294)
Q Consensus        72 RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~-~lcW~~v~  123 (294)
                      |+|||||+|++..|-+                .+.++.++.|-. .+.|..+.
T Consensus       200 ~~LKpGG~lv~~~P~i----------------~Qv~~~~~~l~~~~~~f~~i~  236 (324)
T d2b25a1         200 PHLKHGGVCAVYVVNI----------------TQVIELLDGIRTCELALSCEK  236 (324)
T ss_dssp             GGEEEEEEEEEEESSH----------------HHHHHHHHHHHHHTCCEEEEE
T ss_pred             HhccCCCEEEEEeCCH----------------HHHHHHHHHHHHcCCCceeeE
Confidence            9999999999988732                456666666643 45676554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=5.6e-05  Score=64.93  Aligned_cols=69  Identities=12%  Similarity=0.049  Sum_probs=54.2

Q ss_pred             eeccCCCcHHHHHHHHHc----C------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALER----G------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----g------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      .+...|.++++++.|+++    +      ....+...|....+++++.||+|++..++.|.       ..++.+.|||||
T Consensus       103 ~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~i-------p~~l~~~LkpGG  175 (224)
T d1i1na_         103 KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGG  175 (224)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEE
T ss_pred             eEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhhc-------CHHHHhhcCCCc
Confidence            456679999999999764    2      13556677888888889999999999988442       246789999999


Q ss_pred             EEEEEc
Q 041513           79 YWVVSG   84 (294)
Q Consensus        79 ~~vis~   84 (294)
                      ++++..
T Consensus       176 ~LV~pv  181 (224)
T d1i1na_         176 RLILPV  181 (224)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999965

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00013  Score=65.55  Aligned_cols=72  Identities=17%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             eccCCCcHHHHHHHHH----cCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc--cChHHHHHHHHhccCCCcEEE
Q 041513           10 FAPLDVHEAQVQFALE----RGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--SYDGLYLMEIDRVLRPGGYWV   81 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~e----rgv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--~d~~~~L~Ei~RVLKPGG~~v   81 (294)
                      +...|.|+ |++.|++    .+.  .+.+..++...+++++++||+|++....++..  .....++.++.|+|||||.++
T Consensus        64 V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          64 VIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            34456664 5555544    343  46677788999999999999999976653332  345568999999999999986


Q ss_pred             E
Q 041513           82 V   82 (294)
Q Consensus        82 i   82 (294)
                      =
T Consensus       143 P  143 (328)
T d1g6q1_         143 P  143 (328)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.18  E-value=0.00019  Score=61.87  Aligned_cols=73  Identities=10%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             eeccCCCcHHHHHHHHHcC--CC-cEEEEccC---CCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALERG--LP-AMVGLLST---YQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg--v~-~~~~v~d~---~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+.+.|+|+.|++.|+++.  .. ......++   +..+.....+|+|++.  + +..++...++.++.|+|||||++++
T Consensus       100 ~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~-~~~~~~~~~l~~~~~~LkpgG~lvi  176 (227)
T d1g8aa_         100 KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED--V-AQPTQAKILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC--C-CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE--c-cccchHHHHHHHHHHhcccCCeEEE
Confidence            4566799999999998752  22 33333443   3445556789998874  3 2344566899999999999999999


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      +.
T Consensus       177 ~~  178 (227)
T d1g8aa_         177 AV  178 (227)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00049  Score=60.92  Aligned_cols=73  Identities=15%  Similarity=-0.055  Sum_probs=52.5

Q ss_pred             eccCCCcHHHHHHHH---HcCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC--hHHHHHHHHhccCCCcEEEE
Q 041513           10 FAPLDVHEAQVQFAL---ERGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--DGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~---ergv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      +...|.|+.|++.++   +.+.  .+.+...+.+.+++++.+||+|+|....++....  ...++....|+|||||+++-
T Consensus        61 V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            455588888765443   3343  4667778899999999999999997665333322  33577778999999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.0014  Score=58.13  Aligned_cols=62  Identities=15%  Similarity=0.043  Sum_probs=46.3

Q ss_pred             HHHHHcCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc--cChHHHHHHHHhccCCCcEEEE
Q 041513           21 QFALERGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--SYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus        21 q~A~ergv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      +.+++.+.  .+.+...+.+.++++.++||+|++....++..  .....++.++.|+|||||.++-
T Consensus        73 ~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          73 KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            33344454  36677788999999999999999876653322  2345799999999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.39  E-value=0.0014  Score=56.14  Aligned_cols=69  Identities=10%  Similarity=-0.011  Sum_probs=50.2

Q ss_pred             eeccCCCcHHHHHHHHHc--C-CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513            9 SFAPLDVHEAQVQFALER--G-LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er--g-v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      .+...|.++++++.|+++  . .++.+...|......+.+.||.|++..++.+.   +    .++.+.|||||++++-.
T Consensus        94 ~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~i---p----~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_          94 KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTL---L----CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSC---C----HHHHHTEEEEEEEEEEE
T ss_pred             ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhhh---h----HHHHHhcCCCCEEEEEE
Confidence            355679999999999875  2 35566666655544456889999999888443   2    34567899999998843

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.00079  Score=62.76  Aligned_cols=74  Identities=7%  Similarity=-0.059  Sum_probs=47.8

Q ss_pred             eccCCCcHHHHHHHHHcC-----------C---CcEEE-EccCCCCCCCC---CcccEEEecCcCcccccChHHHHHHHH
Q 041513           10 FAPLDVHEAQVQFALERG-----------L---PAMVG-LLSTYQLPYPS---RSFDVAHCSRCLVPWTSYDGLYLMEID   71 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg-----------v---~~~~~-v~d~~~LPfpd---~sFD~V~~s~~l~h~~~d~~~~L~Ei~   71 (294)
                      +.+.|+|+.|++.|+++.           .   ...+. ..+....++.+   ..+|+|++. ++ ++.++...+|.|+.
T Consensus       243 v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~in-n~-~f~~~l~~~L~ei~  320 (406)
T d1u2za_         243 SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVN-NF-LFDEDLNKKVEKIL  320 (406)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEEC-CT-TCCHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEe-cc-cCchHHHHHHHHHH
Confidence            568899999999998642           1   12222 22222222222   245777765 44 34455668999999


Q ss_pred             hccCCCcEEEEEcC
Q 041513           72 RVLRPGGYWVVSGP   85 (294)
Q Consensus        72 RVLKPGG~~vis~p   85 (294)
                      |+|||||+|+.+.+
T Consensus       321 r~LKPGGrIVs~~~  334 (406)
T d1u2za_         321 QTAKVGCKIISLKS  334 (406)
T ss_dssp             TTCCTTCEEEESSC
T ss_pred             HhcCCCcEEEEecc
Confidence            99999999988653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.84  E-value=0.0025  Score=54.33  Aligned_cols=69  Identities=12%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             eeccCCCcHHHHHHHHHc---------C-CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513            9 SFAPLDVHEAQVQFALER---------G-LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er---------g-v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      .+...|.+++++++|+++         + .++.+...|......+.+.||.|++..++.+.   +    ..+.+.|||||
T Consensus       112 ~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~---p----~~l~~~Lk~gG  184 (223)
T d1r18a_         112 RIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDT---P----TELINQLASGG  184 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSC---C----HHHHHTEEEEE
T ss_pred             EEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceeeEEEEeechhc---h----HHHHHhcCCCc
Confidence            356679999999999764         1 25667778877777778899999999888432   2    24678999999


Q ss_pred             EEEEEc
Q 041513           79 YWVVSG   84 (294)
Q Consensus        79 ~~vis~   84 (294)
                      ++++-.
T Consensus       185 ~lV~pv  190 (223)
T d1r18a_         185 RLIVPV  190 (223)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998854

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.0011  Score=59.31  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC----CCCCCCcccEEEecC-cCccccc-------ChHHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ----LPYPSRSFDVAHCSR-CLVPWTS-------YDGLYLMEID   71 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~----LPfpd~sFD~V~~s~-~l~h~~~-------d~~~~L~Ei~   71 (294)
                      ++...|+|+.+++.|+++    |+ ++.+.+.|+..    ++.....||+|++-- ++..-..       +-..++..+.
T Consensus       169 ~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~  248 (318)
T d1wxxa2         169 EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAI  248 (318)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHH
T ss_pred             cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHH
Confidence            566789999999999864    55 45666666433    455678999999742 1111111       1124788899


Q ss_pred             hccCCCcEEEEEcC
Q 041513           72 RVLRPGGYWVVSGP   85 (294)
Q Consensus        72 RVLKPGG~~vis~p   85 (294)
                      ++|||||.++++..
T Consensus       249 ~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         249 KLLKEGGILATASC  262 (318)
T ss_dssp             HTEEEEEEEEEEEC
T ss_pred             HHcCCCCEEEEEeC
Confidence            99999999999773

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.029  Score=49.06  Aligned_cols=76  Identities=9%  Similarity=0.127  Sum_probs=52.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcc------------ccc----------
Q 041513            9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVP------------WTS----------   61 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h------------~~~----------   61 (294)
                      .+...|+|+..++.|++.    ++. +.+...|... +++++.||+|+|.-=.+.            +.+          
T Consensus       134 ~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dG  212 (274)
T d2b3ta1         134 EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSG  212 (274)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHH
T ss_pred             eeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhccccccc
Confidence            566679999999999874    453 6666666432 567889999999732211            100          


Q ss_pred             --ChHHHHHHHHhccCCCcEEEEEcC
Q 041513           62 --YDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        62 --d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                        .-..++.+..+.|+|||.+++-..
T Consensus       213 l~~~~~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         213 MADIVHIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             THHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             chHHHHHHHHHHHhcCCCCEEEEEEC
Confidence              012378899999999999999654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.55  E-value=0.0035  Score=56.08  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCC----CCCCCCCcccEEEecC-cCcccccC-------hHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTY----QLPYPSRSFDVAHCSR-CLVPWTSY-------DGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~----~LPfpd~sFD~V~~s~-~l~h~~~d-------~~~~L~Ei   70 (294)
                      .+...|+|+.+++.|+++    |+  .+.+.+.|+.    .++.....||+|++-- ++.....+       -..++...
T Consensus       170 ~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a  249 (324)
T d2as0a2         170 EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAG  249 (324)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHH
Confidence            466779999999999874    55  3456666633    3455678999999732 11111111       12378888


Q ss_pred             HhccCCCcEEEEEcC
Q 041513           71 DRVLRPGGYWVVSGP   85 (294)
Q Consensus        71 ~RVLKPGG~~vis~p   85 (294)
                      .++|||||.|+++..
T Consensus       250 ~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         250 LNLVKDGGILVTCSC  264 (324)
T ss_dssp             HTTEEEEEEEEEEEC
T ss_pred             HHHcCCCcEEEEEeC
Confidence            999999999999873

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.54  E-value=0.011  Score=50.07  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=50.1

Q ss_pred             eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513           10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      +...|.++.+++.|+++    ++ ++.+..+|......+.+.||.|++..++.+.   |..    +..-|||||++++-.
T Consensus       104 V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~i---p~~----l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         104 VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI---PEP----LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC---CHH----HHHTEEEEEEEEEEE
T ss_pred             eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccC---CHH----HHHhcCCCCEEEEEE
Confidence            45568889999999864    44 4667777776666678899999999888432   322    445799999999854

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.94  E-value=0.016  Score=49.63  Aligned_cols=53  Identities=13%  Similarity=0.119  Sum_probs=39.2

Q ss_pred             cEEEEccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcC
Q 041513           30 AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        30 ~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+...|.. -++|  ..|+++++++||+|.++.. .+|+.+++.|+|||.+++...
T Consensus       126 i~~~~gd~~-~~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         126 IEHVGGDMF-ASVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             EEEEECCTT-TCCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEecCCcc-cccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            444445532 2444  3499999999988865433 589999999999999999873

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=93.78  E-value=0.022  Score=50.73  Aligned_cols=77  Identities=9%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccCC----CCCCCCCcccEEEec---Cc-----CcccccChHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTY----QLPYPSRSFDVAHCS---RC-----LVPWTSYDGLYLME   69 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~----~LPfpd~sFD~V~~s---~~-----l~h~~~d~~~~L~E   69 (294)
                      ++...|+|+.+++.|+++    ++   ...+...|+.    .+.-....||+|++-   +.     +.....+-..++..
T Consensus       169 ~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~  248 (317)
T d2b78a2         169 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQ  248 (317)
T ss_dssp             EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHH
T ss_pred             eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHH
Confidence            345669999999999864    44   3556666642    223346789999973   11     11111222358888


Q ss_pred             HHhccCCCcEEEEEcC
Q 041513           70 IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        70 i~RVLKPGG~~vis~p   85 (294)
                      ..++|+|||.++++..
T Consensus       249 a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         249 GLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHTEEEEEEEEEEEC
T ss_pred             HHHHcCCCCEEEEEeC
Confidence            9999999999999875

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.13  E-value=0.054  Score=44.81  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             CCCCcccEEEecCc--C--ccc---------ccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           42 YPSRSFDVAHCSRC--L--VPW---------TSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        42 fpd~sFD~V~~s~~--l--~h~---------~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +|++|+|+|+++==  .  ..+         ...-...+.|+.|+|+|||.+++...
T Consensus        19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~   75 (256)
T d1g60a_          19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT   75 (256)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence            57889999987621  1  011         11122478899999999999887653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.72  E-value=0.021  Score=47.91  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=45.6

Q ss_pred             ccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-C-----CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513           11 APLDVHEAQVQFALER----GL--PAMVGLLSTYQ-L-----PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus        11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-L-----Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      ...|.++.+++.|++.    |+  .+.+..+++.. +     .+..+.||+|+.-..-  -.......+.+..|+|||||
T Consensus        85 ~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~--~~~~~~~~l~~~~~lLkpGG  162 (214)
T d2cl5a1          85 LTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWK--DRYLPDTLLLEKCGLLRKGT  162 (214)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCG--GGHHHHHHHHHHTTCEEEEE
T ss_pred             EEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccc--cccccHHHHHHHhCccCCCc
Confidence            3458889999998753    55  35666666332 2     2456789999976322  11112246888999999999


Q ss_pred             EEEE
Q 041513           79 YWVV   82 (294)
Q Consensus        79 ~~vi   82 (294)
                      .+++
T Consensus       163 vIv~  166 (214)
T d2cl5a1         163 VLLA  166 (214)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7655

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.01  E-value=0.1  Score=44.85  Aligned_cols=70  Identities=7%  Similarity=0.040  Sum_probs=51.3

Q ss_pred             eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513            9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV   82 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi   82 (294)
                      .+...|+++.+++.|+++    ++  .+.+..+|+..++. .+.||.|++..-     .....++.+..++|||||.+.+
T Consensus       132 ~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~  205 (260)
T d2frna1         132 KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHY  205 (260)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred             EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEE
Confidence            355679999999999864    44  35666778777654 678999986522     1234688999999999999876


Q ss_pred             Ec
Q 041513           83 SG   84 (294)
Q Consensus        83 s~   84 (294)
                      ..
T Consensus       206 ~~  207 (260)
T d2frna1         206 HN  207 (260)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.74  E-value=0.063  Score=44.22  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=53.7

Q ss_pred             eeeccCCCcHHHHHHHHHcC----CCcEEEEccCCCC-----CCCCCcccEEEecCcCccc--------ccChHHHHHHH
Q 041513            8 MSFAPLDVHEAQVQFALERG----LPAMVGLLSTYQL-----PYPSRSFDVAHCSRCLVPW--------TSYDGLYLMEI   70 (294)
Q Consensus         8 ~s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~~L-----Pfpd~sFD~V~~s~~l~h~--------~~d~~~~L~Ei   70 (294)
                      ..+.+.|.+++|++.|+++.    ..+.+.......+     .+..++||.|+.-..+..+        ......+|.+.
T Consensus        48 ~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a  127 (192)
T d1m6ya2          48 CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKA  127 (192)
T ss_dssp             CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHG
T ss_pred             CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHH
Confidence            35677899999999999863    2455555544333     4556899999866544111        11223589999


Q ss_pred             HhccCCCcEEEEEc
Q 041513           71 DRVLRPGGYWVVSG   84 (294)
Q Consensus        71 ~RVLKPGG~~vis~   84 (294)
                      .++|+|||.+++..
T Consensus       128 ~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2         128 EDLLNPGGRIVVIS  141 (192)
T ss_dssp             GGGEEEEEEEEEEE
T ss_pred             HHhcCCCCeeeeec
Confidence            99999999998865

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.46  E-value=0.11  Score=45.04  Aligned_cols=74  Identities=14%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             eccCCCcHHHHHHHHHcC---------------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccC----hHHHHHHH
Q 041513           10 FAPLDVHEAQVQFALERG---------------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEI   70 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg---------------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei   70 (294)
                      +.-.|+.+++++.|++--               -.+.+...|+...--.++.||+|++-..- +....    -..+++.+
T Consensus        98 v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~-~~~~~~~L~t~eF~~~~  176 (276)
T d1mjfa_          98 VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTD-PVGPAKVLFSEEFYRYV  176 (276)
T ss_dssp             EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCC-CC-----TTSHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCEEEEeCCC-CCCCcccccCHHHHHhh
Confidence            334589999999998621               12455556643221236789999864322 22111    13689999


Q ss_pred             HhccCCCcEEEEEc
Q 041513           71 DRVLRPGGYWVVSG   84 (294)
Q Consensus        71 ~RVLKPGG~~vis~   84 (294)
                      .|.|+|||.++.-.
T Consensus       177 ~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         177 YDALNNPGIYVTQA  190 (276)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HhhcCCCceEEEec
Confidence            99999999998854

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.26  E-value=0.057  Score=47.97  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=48.9

Q ss_pred             eeccCCCcHHHHHHHHHc----CC---CcEEEEccCCC----CCCCCCcccEEEec---CcC----ccc--ccChHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQ----LPYPSRSFDVAHCS---RCL----VPW--TSYDGLYLM   68 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~----LPfpd~sFD~V~~s---~~l----~h~--~~d~~~~L~   68 (294)
                      ++...|.|+.+++.|++.    ++   .+.+.+.|+..    +....+.||+|++-   +..    ..|  .++...++.
T Consensus       156 ~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~  235 (309)
T d2igta1         156 EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  235 (309)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHH
Confidence            455679999999999874    44   35666666432    22346789999972   211    011  122335667


Q ss_pred             HHHhccCCCcEEEEEc
Q 041513           69 EIDRVLRPGGYWVVSG   84 (294)
Q Consensus        69 Ei~RVLKPGG~~vis~   84 (294)
                      .+.++|+|||.++++.
T Consensus       236 ~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         236 ICREILSPKALGLVLT  251 (309)
T ss_dssp             HHHHTBCTTCCEEEEE
T ss_pred             HHHHhcCCCCCEEEEe
Confidence            7889999999766543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.07  E-value=0.14  Score=43.43  Aligned_cols=54  Identities=15%  Similarity=0.081  Sum_probs=39.5

Q ss_pred             CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCC---cEEEEEcC
Q 041513           29 PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPG---GYWVVSGP   85 (294)
Q Consensus        29 ~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPG---G~~vis~p   85 (294)
                      .+.+...|... |.|  .+|++++.++||+|.++. ..+|+.+++.|+||   |++++...
T Consensus       124 rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         124 NLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             TEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             ceEEEecCccc-CCC--CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            34555555432 333  579999999998887654 35899999999999   77888753

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.27  Score=41.05  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             ccCCCcHHHHHHHHHc----CC--CcEEEEccCC-CCC-----CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513           11 APLDVHEAQVQFALER----GL--PAMVGLLSTY-QLP-----YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG   78 (294)
Q Consensus        11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~-~LP-----fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG   78 (294)
                      .-.|.+++..+.|++.    |+  .+.+.++++. .++     ..+++||+|+.-.    ....-...+.++.+.|+|||
T Consensus        88 ~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GG  163 (219)
T d2avda1          88 VTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGG  163 (219)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEE
T ss_pred             EEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCc
Confidence            3346777888888753    44  3455555532 222     3467899999763    33344478899999999999


Q ss_pred             EEEEEc
Q 041513           79 YWVVSG   84 (294)
Q Consensus        79 ~~vis~   84 (294)
                      .+++-.
T Consensus       164 vii~Dn  169 (219)
T d2avda1         164 ILAVLR  169 (219)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            998853

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=87.98  E-value=0.29  Score=42.26  Aligned_cols=77  Identities=14%  Similarity=0.045  Sum_probs=45.5

Q ss_pred             eeccCCCcHHHHHHHHHc----CCC--cEEEEcc-CCCCCCCCCcccEEEecCcCcc----------cc--------cCh
Q 041513            9 SFAPLDVHEAQVQFALER----GLP--AMVGLLS-TYQLPYPSRSFDVAHCSRCLVP----------WT--------SYD   63 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h----------~~--------~d~   63 (294)
                      .+...|+|+..++.|+++    ++.  ..+...+ ...++...+.||+|+|.==.+.          +.        .+.
T Consensus       135 ~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dG  214 (271)
T d1nv8a_         135 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDG  214 (271)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTS
T ss_pred             eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccch
Confidence            455679999999999874    443  2333344 2333434578999999721100          00        111


Q ss_pred             HHHHHH-HHhccCCCcEEEEEcC
Q 041513           64 GLYLME-IDRVLRPGGYWVVSGP   85 (294)
Q Consensus        64 ~~~L~E-i~RVLKPGG~~vis~p   85 (294)
                      ..++++ +.+.|+|||.+++-..
T Consensus       215 l~~~r~i~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         215 LDFYREFFGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             CHHHHHHHHHCCCTTCEEEEECC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEC
Confidence            122222 5678999999888654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=87.70  E-value=0.16  Score=44.87  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             eeccCCCcHHHHHHHHHc------C----CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC-------hHHHHHHH
Q 041513            9 SFAPLDVHEAQVQFALER------G----LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY-------DGLYLMEI   70 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~er------g----v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d-------~~~~L~Ei   70 (294)
                      .+.-.|+.+++++.|++.      +    ..+.+...|+.. +.-.++.||+|++-..= ++..+       -..+++.+
T Consensus       103 ~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~d-p~~~~~~~~~L~t~eF~~~~  181 (312)
T d1uira_         103 KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD-PVGEDNPARLLYTVEFYRLV  181 (312)
T ss_dssp             EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC-CBSTTCGGGGGSSHHHHHHH
T ss_pred             eEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCC-cccccchhhhhhhHHHHHHH
Confidence            344558999999999864      1    134555566332 23346789999964321 12111       13689999


Q ss_pred             HhccCCCcEEEEEc
Q 041513           71 DRVLRPGGYWVVSG   84 (294)
Q Consensus        71 ~RVLKPGG~~vis~   84 (294)
                      .|.|+|||.|+.-.
T Consensus       182 ~~~L~p~Gvlv~~~  195 (312)
T d1uira_         182 KAHLNPGGVMGMQT  195 (312)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHhcCCCceEEEec
Confidence            99999999998854

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.55  E-value=0.27  Score=41.21  Aligned_cols=53  Identities=13%  Similarity=0.068  Sum_probs=37.3

Q ss_pred             cEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEcC
Q 041513           30 AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        30 ~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      +.+...|.. -|+|.  .|+++...++|+|.++ ...+|+++.+.|+|||.+++...
T Consensus       126 ~~~~~~d~~-~~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         126 VEHVGGDMF-VSIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             EEEEECCTT-TCCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             eEEeccccc-ccCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence            344444432 24443  5778889999777643 33699999999999999999763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.28  E-value=0.63  Score=40.32  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=49.8

Q ss_pred             eccCCCcHHHHHHHHHc---------CCCcEEEEccC-CCC-CCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513           10 FAPLDVHEAQVQFALER---------GLPAMVGLLST-YQL-PYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL   74 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er---------gv~~~~~v~d~-~~L-Pfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL   74 (294)
                      +.-.|+.+++++.|++-         .....+...|+ +-+ -.+++.||+|+.-..- .....    ...+++.+.|.|
T Consensus       107 i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~d-p~~~~~~L~t~eF~~~~~~~L  185 (290)
T d1xj5a_         107 IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSD-PIGPAKELFEKPFFQSVARAL  185 (290)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCC-TTSGGGGGGSHHHHHHHHHHE
T ss_pred             eEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCCC-CCCcchhhCCHHHHHHHHHhc
Confidence            44558899999999873         12355555652 223 2456789999964221 21111    135999999999


Q ss_pred             CCCcEEEEEcC
Q 041513           75 RPGGYWVVSGP   85 (294)
Q Consensus        75 KPGG~~vis~p   85 (294)
                      +|||.++.-..
T Consensus       186 ~~~Gi~v~q~~  196 (290)
T d1xj5a_         186 RPGGVVCTQAE  196 (290)
T ss_dssp             EEEEEEEEECC
T ss_pred             CCCcEEEEecC
Confidence            99999999764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.24  E-value=0.12  Score=43.09  Aligned_cols=45  Identities=29%  Similarity=0.570  Sum_probs=32.0

Q ss_pred             CCCCCcccEEEecC----cCccc------ccChHHHHHHHHhccCCCcEEEEEcC
Q 041513           41 PYPSRSFDVAHCSR----CLVPW------TSYDGLYLMEIDRVLRPGGYWVVSGP   85 (294)
Q Consensus        41 Pfpd~sFD~V~~s~----~l~h~------~~d~~~~L~Ei~RVLKPGG~~vis~p   85 (294)
                      -+|++|+|+|+++=    ....|      .+.....+.|+.|+|||||.+++...
T Consensus        18 ~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_          18 KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            36899999999863    11111      11234578899999999999998763

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.12  E-value=0.5  Score=41.26  Aligned_cols=75  Identities=12%  Similarity=0.035  Sum_probs=48.5

Q ss_pred             eccCCCcHHHHHHHHHcC---------CCcEEEEccC-CCCCCCCCcccEEEecCcCcccc-----cChHHHHHHHHhcc
Q 041513           10 FAPLDVHEAQVQFALERG---------LPAMVGLLST-YQLPYPSRSFDVAHCSRCLVPWT-----SYDGLYLMEIDRVL   74 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg---------v~~~~~v~d~-~~LPfpd~sFD~V~~s~~l~h~~-----~d~~~~L~Ei~RVL   74 (294)
                      +.-.|+.+++++.|++.-         ..+.+...|+ +-+.-.++.||+|++-..- +..     -....+++.+.|.|
T Consensus       116 i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d-p~~~~~~~L~t~efy~~~~~~L  194 (295)
T d1inla_         116 AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD-PTAGQGGHLFTEEFYQACYDAL  194 (295)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHE
T ss_pred             EEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCC-CCcCchhhhccHHHHHHHHhhc
Confidence            445588899999998731         2345555652 2233346789999964322 211     11246999999999


Q ss_pred             CCCcEEEEEcC
Q 041513           75 RPGGYWVVSGP   85 (294)
Q Consensus        75 KPGG~~vis~p   85 (294)
                      +|||.|+.-..
T Consensus       195 ~~~Gi~v~q~~  205 (295)
T d1inla_         195 KEDGVFSAETE  205 (295)
T ss_dssp             EEEEEEEEECC
T ss_pred             CCCcEEEEecC
Confidence            99999998653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=86.56  E-value=0.59  Score=40.32  Aligned_cols=81  Identities=16%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             ceeeeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-----------------h
Q 041513            5 ILTMSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-----------------D   63 (294)
Q Consensus         5 v~t~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-----------------~   63 (294)
                      .....+.+.|+++.+++.|+..    +........+... ..+...||+|++.-=+......                 .
T Consensus       144 ~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~  222 (328)
T d2f8la1         144 DVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAH  222 (328)
T ss_dssp             SCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHH
T ss_pred             CccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccccCCCCCCCccchhhhhcchhcccCcchHH
Confidence            3456788899999999999753    4566665555332 3456789999987322111100                 1


Q ss_pred             HHHHHHHHhccCCCcEEEEEcCC
Q 041513           64 GLYLMEIDRVLRPGGYWVVSGPP   86 (294)
Q Consensus        64 ~~~L~Ei~RVLKPGG~~vis~pp   86 (294)
                      ..++..+.+.|+|||++++..|.
T Consensus       223 ~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         223 FLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHhcCCCCceEEEecC
Confidence            13688899999999999888863

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=85.68  E-value=0.21  Score=39.76  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             cCCCcHHHHHHHHHc----CCCcEEEEccCC----CCCCCCCcccEEEecCcCcccccChHHHHHHH--HhccCCCcEEE
Q 041513           12 PLDVHEAQVQFALER----GLPAMVGLLSTY----QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEI--DRVLRPGGYWV   81 (294)
Q Consensus        12 p~D~S~~mlq~A~er----gv~~~~~v~d~~----~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei--~RVLKPGG~~v   81 (294)
                      ..|.++.+++.|++.    ++...+...+..    ........||+|++-==+   ..+....+.++  ...|+|||+++
T Consensus        68 ~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY---~~~~~~~l~~l~~~~ll~~~g~iv  144 (171)
T d1ws6a1          68 LVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY---AMDLAALFGELLASGLVEAGGLYV  144 (171)
T ss_dssp             EECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT---TSCTTHHHHHHHHHTCEEEEEEEE
T ss_pred             hcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc---ccCHHHHHHHHHHcCCcCCCeEEE
Confidence            479999999999764    555554444322    234566789999985222   11222444444  35899999988


Q ss_pred             EEc
Q 041513           82 VSG   84 (294)
Q Consensus        82 is~   84 (294)
                      +..
T Consensus       145 ie~  147 (171)
T d1ws6a1         145 LQH  147 (171)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.76  E-value=0.53  Score=40.79  Aligned_cols=74  Identities=14%  Similarity=0.157  Sum_probs=47.0

Q ss_pred             eccCCCcHHHHHHHHHcC---------CCcEEEEccC-CCCCCCCCcccEEEecCcCccccc----ChHHHHHHHHhccC
Q 041513           10 FAPLDVHEAQVQFALERG---------LPAMVGLLST-YQLPYPSRSFDVAHCSRCLVPWTS----YDGLYLMEIDRVLR   75 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~erg---------v~~~~~v~d~-~~LPfpd~sFD~V~~s~~l~h~~~----d~~~~L~Ei~RVLK   75 (294)
                      +.-.|+.+++++.|++--         ....+...|+ +-+--..+.||+|++-..- ....    .-..+++.+.|.|+
T Consensus       105 v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~-p~~~~~~L~t~eF~~~~~~~L~  183 (285)
T d2o07a1         105 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD-PMGPAESLFKESYYQLMKTALK  183 (285)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC------------CHHHHHHHHHEE
T ss_pred             eeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC-CCCcccccccHHHHHHHHHhcC
Confidence            334588889999998641         2355555662 2222346789999975321 1111    11258999999999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||.+++-.
T Consensus       184 ~~Gi~v~q~  192 (285)
T d2o07a1         184 EDGVLCCQG  192 (285)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCeEEEec
Confidence            999999865

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=83.08  E-value=0.81  Score=39.25  Aligned_cols=74  Identities=14%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             eccCCCcHHHHHHHHHc-----C----CCcEEEEccCC-CCCCCCCcccEEEecCcCccccc----ChHHHHHHHHhccC
Q 041513           10 FAPLDVHEAQVQFALER-----G----LPAMVGLLSTY-QLPYPSRSFDVAHCSRCLVPWTS----YDGLYLMEIDRVLR   75 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~er-----g----v~~~~~v~d~~-~LPfpd~sFD~V~~s~~l~h~~~----d~~~~L~Ei~RVLK   75 (294)
                      +.-.|+.+++++.|++-     +    ..+.+...|+. -+--.++.||+|+.-..- +...    ....+++.+.|.|+
T Consensus       102 i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~-p~~~~~~L~t~eFy~~~~~~L~  180 (274)
T d1iy9a_         102 ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTE-PVGPAVNLFTKGFYAGIAKALK  180 (274)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSS-CCSCCCCCSTTHHHHHHHHHEE
T ss_pred             EEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCC-CCCcchhhccHHHHHHHHhhcC
Confidence            33458888999999874     2    13455556633 233346789999865322 1111    12369999999999


Q ss_pred             CCcEEEEEc
Q 041513           76 PGGYWVVSG   84 (294)
Q Consensus        76 PGG~~vis~   84 (294)
                      |||.|+.-.
T Consensus       181 ~~Gv~v~q~  189 (274)
T d1iy9a_         181 EDGIFVAQT  189 (274)
T ss_dssp             EEEEEEEEC
T ss_pred             CCceEEEec
Confidence            999999865

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.88  E-value=1.1  Score=38.95  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=50.0

Q ss_pred             eccCCCcHHHHHHHHH----cCCC-cEEEEccCCCCCCCCCcccEEEe----cC--cCcc-----cccC----------h
Q 041513           10 FAPLDVHEAQVQFALE----RGLP-AMVGLLSTYQLPYPSRSFDVAHC----SR--CLVP-----WTSY----------D   63 (294)
Q Consensus        10 ~ap~D~S~~mlq~A~e----rgv~-~~~~v~d~~~LPfpd~sFD~V~~----s~--~l~h-----~~~d----------~   63 (294)
                      +...|.++.-++..++    .|+. +.....|...++..+..||.|++    |.  ++..     |...          .
T Consensus       144 i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q  223 (313)
T d1ixka_         144 IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQ  223 (313)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHH
T ss_pred             eeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHH
Confidence            3445888888877654    2554 44444567777777889999985    32  1211     1111          1


Q ss_pred             HHHHHHHHhccCCCcEEEEEcCCC
Q 041513           64 GLYLMEIDRVLRPGGYWVVSGPPI   87 (294)
Q Consensus        64 ~~~L~Ei~RVLKPGG~~vis~pp~   87 (294)
                      ..+|....+.|||||+++.|+=.+
T Consensus       224 ~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         224 MRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHhhhheeCCCcEEEEeeccC
Confidence            236778889999999999988433

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.13  E-value=0.9  Score=39.91  Aligned_cols=76  Identities=14%  Similarity=0.078  Sum_probs=47.4

Q ss_pred             eeccCCCcHHHHHHHHHcC---------CCcEEEEccC-CCCCCCCCcccEEEecCcCccccc----ChHHHHHHHHhcc
Q 041513            9 SFAPLDVHEAQVQFALERG---------LPAMVGLLST-YQLPYPSRSFDVAHCSRCLVPWTS----YDGLYLMEIDRVL   74 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~-~~LPfpd~sFD~V~~s~~l~h~~~----d~~~~L~Ei~RVL   74 (294)
                      .+.-.|+.+++++.|++--         ....+...|+ +-+--..+.||+|++-..- ....    ....+++.+.|.|
T Consensus       132 ~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~d-p~~~~~~L~t~eFy~~~~~~L  210 (312)
T d2b2ca1         132 KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSD-PVGPAESLFGQSYYELLRDAL  210 (312)
T ss_dssp             EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC--------------HHHHHHHHE
T ss_pred             eEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCC-CCCcchhhhhHHHHHHHHhhc
Confidence            3445588999999998742         1234444552 2223346789999975322 1111    1135899999999


Q ss_pred             CCCcEEEEEcC
Q 041513           75 RPGGYWVVSGP   85 (294)
Q Consensus        75 KPGG~~vis~p   85 (294)
                      +|||.++.-..
T Consensus       211 ~~~Gi~v~q~~  221 (312)
T d2b2ca1         211 KEDGILSSQGE  221 (312)
T ss_dssp             EEEEEEEEECC
T ss_pred             CCCcEEEEecC
Confidence            99999999764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=81.24  E-value=0.65  Score=41.68  Aligned_cols=44  Identities=27%  Similarity=0.450  Sum_probs=33.1

Q ss_pred             CCCCCCcccEEEecCcCcccccC---------------------------------hHHHHHHHHhccCCCcEEEEEc
Q 041513           40 LPYPSRSFDVAHCSRCLVPWTSY---------------------------------DGLYLMEIDRVLRPGGYWVVSG   84 (294)
Q Consensus        40 LPfpd~sFD~V~~s~~l~h~~~d---------------------------------~~~~L~Ei~RVLKPGG~~vis~   84 (294)
                      =-||++|.+++||+.++ ||...                                 ...+|+-=.+-|+|||+++++.
T Consensus       133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            34899999999999999 88531                                 1124555556788999999975

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.27  E-value=0.68  Score=37.91  Aligned_cols=42  Identities=10%  Similarity=0.079  Sum_probs=34.6

Q ss_pred             eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEec
Q 041513            9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCS   53 (294)
Q Consensus         9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s   53 (294)
                      ++.+.|+++.+++.|+++...+.+.++|...++   +.||+|++.
T Consensus        73 ~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N  114 (197)
T d1ne2a_          73 SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN  114 (197)
T ss_dssp             EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred             cccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence            466779999999999987767788888877654   679999986