Citrus Sinensis ID: 041515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760--
Protein Sequence
MISIPPSKRWRLTWFPLHDSRNKAKARRTRKQERRKTQSKMEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQKIRDQLEECRLENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Secondary Structure (PSIPRED)
ccccccccccccEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccHHHcHHccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHccHccHHHHHHHHHHHHHHccccHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEcc
Coil and Loop (DISEMBL)
misippskrwrltwfplhdsrNKAKARRTRKQERRKTQSKMEESEVILLNSlksggvsipadvssikdltseTLVSICGQSLNLIFNtmtfgtslphsmaEKFKICTDISSAIKNlgyigdisyykflypseEDLYKLIRFLVERLSELpkkvkvadgkgvdvrgninkstlegngetdldHQKIRDQLEecrlenelpqssnsedvasdsvsssrvqdynkndvtGVIRGKIKNHADNLQNRDESLMEAVTAktselcdpeEEYQLLKAAAEmafddshpteFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADlekqpkvaSRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNeirtsdgakrqqqkicgpvvAMTFNFVVSVGIILTnklvmgqvgfnfPIFLTVIHYAVAWILLAIFKAfsiipvsppaittpfsSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLAlmpwldppgvlfykwnlnnsSAIFISALLGFLLQWSGALALG
Flexible Loop (DISEMBL)
misippskrwrltwfplhdsrnkakarrtrkqerrktqskmeesevillnslksggvsiPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLselpkkvkvadgkgvdvrgninkstlegngetdldHQKIRDQLEECRLenelpqssnsedvasdsvsssrvqdynkndvtgvirgkiknhadnlqnrDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLseirkredeysklsadlekqpkvasrrsyierikeitknsrkvdtdiERILKEtrelqlesnsiqerlhrTYAVVDDMIFReakkdqsfeqvsekilatdrvRREIAEYEKKLaavasrslnvdKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEirtsdgakrqqQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Low Complexity Region (SEG)
MISIPPSKRWRLTWFPLHDSRNkakarrtrkqerrktqskMEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPkkvkvadgkgvdvRGNINKSTLEGNGETDLDHQKIRDQLEECRLENELPQssnsedvasdsvsssrvqdYNKNDVTGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDAlkesleekkrsleeslYANELEAQAkllklrevelerQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Disordered region (IsUnstruct)
*********WRLTWFPL*****************************ILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADG************************************************************************************************************LLKAAA*MAF****PTEFYLEQLDEQVGAKKHNLVELELQWDAL********************************************************************************************************QERLHRTYAVVDDMIFREA**********EKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTS*****QQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGAL***
Disordered Region (DISOPRED)
*******KRWRLTWFPL****************************VILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFN************AEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRF********************************************************************************************************************************************************************QWDALKESLE********************************************************************KEITKNSRKVDTDIERILKETR**********ERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKK*******************************************************AKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Disordered Region (DISEMBL)
MISIPPSKRWRLTWFPLHDS**********************ESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQKIRDQLEECRLE**********************QDYNKNDVTGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRT*********KICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Disordered Region (DISPRO)
*ISIPPSKRWRLTWFPLHDS***A********************E*IL*NSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVAD*KGVDVRGNIN*********TDLDHQKIRDQLEECR*****************************NDVTGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISIPPSKRWRLTWFPLHDSRNKAKARRTRKQERRKTQSKMEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQKIRDQLEECRLENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPKVASRRSYIERIKEITKNSRKVDTDxxxxxxxxxxxxxxxxxxxxxLHRTYAVVDDMIFREAKKDQSFEQVSEKILAxxxxxxxxxxxxxxxxxxxxxSLNxxxxxxxxxxxxxxxxxxxxxFHRDGRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	762	2.2.26 [Sep-21-2011]
Q8RXL8	357	Uncharacterized membrane	no	no	0.276	0.591	0.297	5e-20
P86182	627	Coiled-coil domain-contai	yes	no	0.259	0.315	0.308	2e-18
Q9JIG7	627	Coiled-coil domain-contai	yes	no	0.259	0.315	0.308	4e-18
O60826	627	Coiled-coil domain-contai	yes	no	0.253	0.307	0.301	7e-18
A7RNG8	644	Coiled-coil domain-contai	N/A	no	0.311	0.368	0.293	3e-16
Q1RMI8	595	Coiled-coil domain-contai	yes	no	0.139	0.178	0.379	1e-15
Q28G12	632	Coiled-coil domain-contai	no	no	0.139	0.167	0.388	2e-15
Q54MP2	637	Coiled-coil domain-contai	yes	no	0.300	0.359	0.273	2e-15
B0WTU5	571	Coiled-coil domain-contai	N/A	no	0.279	0.373	0.275	7e-15
Q4V909	639	Coiled-coil domain-contai	yes	no	0.259	0.309	0.294	2e-14

>sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1

 Score =  100 bits (249), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 14/225 (6%)

Query: 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAI---FKAFSIIPVSPPAITTPFSSLFALGV 601
            NK ++  +GF F   LT  H  V +  L +    K F   P  P A+          G+
Sbjct: 28  CNKALISTLGFTFATTLTSWHLLVTFCSLHVALWMKMFEHKPFDPRAV-------MGFGI 80

Query: 602 VMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVA 661
           +   + GL N SL  NSVGFYQM+K+A+ P  VL E + F K  S K   +L I+ +GV 
Sbjct: 81  LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQFSLTILLLGVG 140

Query: 662 VATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLAL 721
           +ATVTDL+ N+ G+++++  ++ + + +I+ + +Q++   ++  L++++ P     L   
Sbjct: 141 IATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQAITLFVT 200

Query: 722 MPWLDP----PGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG 762
            P+LD       V  +K+       I +S L+   + +S  L +G
Sbjct: 201 GPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTFLVIG 245

Arabidopsis thaliana (taxid: 3702)

>sp|P86182|CCD22_RAT Coiled-coil domain-containing protein 22 OS=Rattus norvegicus GN=Ccdc22 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 119/214 (55%), Gaps = 16/214 (7%)

Query: 293 VGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSE 352
           V +    L+ L  QW+  +  L  + R L +     ELE+  +L++++E+    ++   E
Sbjct: 407 VESSAQRLIHLASQWEKHRVPLLAEYRHLRKLQDCRELESSRRLVEIQELHQSVRAAAEE 466

Query: 353 IRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412
            R++E+ Y +L ++LE  PK  SR +Y +RI EI  N RK   +I +IL +T+ELQ E N
Sbjct: 467 ARRKEEVYKQLVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEIN 526

Query: 413 SIQERLHRTYAVVDDMIFREAKKD--------------QSFEQVSEKILATDRVRREIAE 458
           S+  +L RT+AV D+++F++AKKD              ++  Q+ + I  T  + RE+ +
Sbjct: 527 SLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRD 586

Query: 459 YEKKL-AAVASRSL-NVDKLQADVDVIMKENEFL 490
            E+++   +  ++L N++K+  D   + +EN  L
Sbjct: 587 LEEQIETEMGKKTLSNLEKICEDYRALRQENAGL 620

Rattus norvegicus (taxid: 10116)

>sp|Q9JIG7|CCD22_MOUSE Coiled-coil domain-containing protein 22 OS=Mus musculus GN=Ccdc22 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 117/214 (54%), Gaps = 16/214 (7%)

Query: 293 VGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSE 352
           V +    L+ L  QW+  +  L  + R L       ELE+  +L +++E+    ++   E
Sbjct: 407 VESSAQRLIHLASQWEKHRVPLLAEYRHLRRLQDCRELESSRRLAEIQELHHSVRAAAEE 466

Query: 353 IRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412
            R++E+ Y +L ++LE  PK  SR +Y +RI EI  N RK   +I +IL +T+ELQ E N
Sbjct: 467 ARRKEEVYKQLVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEIN 526

Query: 413 SIQERLHRTYAVVDDMIFREAKKD--------------QSFEQVSEKILATDRVRREIAE 458
           S+  +L RT+AV D+++F++AKKD              ++  Q+ + I  T  + RE+ +
Sbjct: 527 SLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRD 586

Query: 459 YEKKL-AAVASRSL-NVDKLQADVDVIMKENEFL 490
            E+++   +  ++L N++K+  D   + +EN  L
Sbjct: 587 LEEQIETEMGKKTLSNLEKICEDYRALRQENAGL 620

Mus musculus (taxid: 10090)

>sp|O60826|CCD22_HUMAN Coiled-coil domain-containing protein 22 OS=Homo sapiens GN=CCDC22 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 117/209 (55%), Gaps = 16/209 (7%)

Query: 298 HNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRE 357
             ++ L  QW+  +  L  + R L +     ELE+  +L +++E+    ++   E R++E
Sbjct: 412 QRVIHLAGQWEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKE 471

Query: 358 DEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417
           + Y +L ++LE  P+  SR +Y +RI EI  N RK   +I +IL +T+ELQ E NS+  +
Sbjct: 472 EVYKQLMSELETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGK 531

Query: 418 LHRTYAVVDDMIFREAKKD--------------QSFEQVSEKILATDRVRREIAEYEKKL 463
           L RT+AV D+++F++AKKD              ++  Q+ + I  T  + RE+ + E+++
Sbjct: 532 LDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQI 591

Query: 464 -AAVASRSL-NVDKLQADVDVIMKENEFL 490
              +  ++L N++K++ D   + +EN  L
Sbjct: 592 ETELGKKTLSNLEKIREDYRALRQENAGL 620

Homo sapiens (taxid: 9606)

>sp|A7RNG8|CCD22_NEMVE Coiled-coil domain-containing protein 22 homolog OS=Nematostella vectensis GN=v1g180167 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 249 EAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWD 308
           E VTA   +  + EE Y++ K   ++  D     E  + +L   V +    LV L  QW+
Sbjct: 381 EQVTATKVQNSEHEESYKVKKRTVDLLPD----AENNIAKLQGVVDSSSQRLVNLAQQWE 436

Query: 309 ALKESLEEKKRSLEESLYANEL-EAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL 367
             + +L ++ R L+  + AN++ E Q KL +++ +  + + V  E R ++D Y +L ++ 
Sbjct: 437 THRTALIDEYRELK-VINANKVSETQKKLEEIKSLREKMKEVAEETRGKDDLYKQLVSEY 495

Query: 368 EKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDD 427
           E+  +  +R +Y  RI EI  N +K   +I +IL +T+ +Q E N +  +L RT+ V D+
Sbjct: 496 ERMSRDVNRSAYTRRILEIVGNIKKQKEEINKILVDTKSVQKEINQLSGKLDRTFTVTDE 555

Query: 428 MIFREAKKDQS-----------FEQVSEKILA---TDRVRREIAEYEKKLAAVASRSL-- 471
           +IFR+AKKD++            E   E I A   T  + REI + E+++   + R+   
Sbjct: 556 LIFRDAKKDEACRKAYKYLASLHENCKELIQAVEDTGVIMREIRDLEEQIDTESQRNTAN 615

Query: 472 NVDKLQADVDVIMKENEFL 490
           N++++ AD   + +EN  L
Sbjct: 616 NLERITADHKQMKEENATL 634

Nematostella vectensis (taxid: 45351)

>sp|Q1RMI8|CCD22_BOVIN Coiled-coil domain-containing protein 22 OS=Bos taurus GN=CCDC22 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 2/108 (1%)

Query: 41  MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTS--LPHS 98
           MEE++ IL++SL+  G ++P DV +++  T+E +V    + L +I   +  G S  LP +
Sbjct: 1   MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLA 60

Query: 99  MAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146
           M+ +F++   ++ A  +LGY  ++ Y  FLYPSE DL  L+ FL ERL
Sbjct: 61  MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERL 108

Bos taurus (taxid: 9913)

>sp|Q28G12|CCD22_XENTR Coiled-coil domain-containing protein 22 OS=Xenopus tropicalis GN=ccdc22 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 2/108 (1%)

Query: 41  MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTM--TFGTSLPHS 98
           MEE + IL++SL+S G  +P DV SI+   +E +V    + L +I  ++  T    LP  
Sbjct: 1   MEEVDRILIHSLRSCGTEVPEDVQSIRQFNTELIVEAVVRCLRVINPSLGATLSHVLPPG 60

Query: 99  MAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146
           M+ +F+I T ++ A ++LGY G++ Y  FLY SE D+  L+ FL E+L
Sbjct: 61  MSARFRIGTSLAQACQDLGYPGEVGYQTFLYSSEPDIRALLIFLAEKL 108

Xenopus tropicalis (taxid: 8364)

>sp|Q54MP2|CCD22_DICDI Coiled-coil domain-containing protein 22 homolog OS=Dictyostelium discoideum GN=DDB_G0285813 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 137/249 (55%), Gaps = 20/249 (8%)

Query: 262 EEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSL 321
           E++Y++ K    +  DD+      L+ L  Q  +   NL+E+  +W+ +++ + EK RSL
Sbjct: 385 EKQYKIKKKTFSL-LDDAEGNMKELQSLCNQTSS---NLLEMSGEWEKVRKPIIEKYRSL 440

Query: 322 EESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIE 381
           ++       E ++KL +++E+ +  + ++SE+++++D++ +L    ++ PK ++R  Y  
Sbjct: 441 KDKQNNQADETKSKLDRIKEMRILIKKLVSEVQQKDDQFQQLQDQYKQAPKDSNRSQYTR 500

Query: 382 RIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS--- 438
           RI E  KN +K   DI+++L +T+ LQ E N+I +   RT+ +V D+++ +AKKDQ+   
Sbjct: 501 RILETVKNIKKQKVDIDKVLLDTKNLQKEINTITDTAVRTFELVKDLLYNDAKKDQTAKQ 560

Query: 439 -----------FEQVSEKILATDRVRREIAEYEKKLAAVASR--SLNVDKLQADVDVIMK 485
                      F+++ + I  T   +  I     K+  V+ +  +LN D++  D+  I  
Sbjct: 561 AIKSFAIIDDKFQKLFKTIDETGNFQNNILNLNSKIEHVSQKTNTLNSDRVVQDLKNIKS 620

Query: 486 ENEFLEQQF 494
           EN+ L +Q 
Sbjct: 621 ENQSLIKQI 629

Dictyostelium discoideum (taxid: 44689)

>sp|B0WTU5|CCD22_CULQU Coiled-coil domain-containing protein 22 homolog OS=Culex quinquefasciatus GN=CPIJ010681 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 16/229 (6%)

Query: 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREV 342
           E  + +L   +GA    + +L+ QWD  +  LE++             ++Q  + ++   
Sbjct: 339 EVNVRKLQGIIGAGGERMKKLQDQWDVHRIPLEQELEGYRVKHSDKLSQSQQIVDQIEAT 398

Query: 343 ELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILK 402
             + + V+ +++ +   +++L  +LEK  +  SR +Y  RI EI  N RK  TDI++IL+
Sbjct: 399 RHKSEEVMMDLQTKSAMHARLQKELEKLNRTVSRTAYTSRILEIVGNIRKQKTDIDKILQ 458

Query: 403 ETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILA-------------- 448
           +TR LQ E N+I  +L R + V DD+IFR AKKD+  ++  + ++               
Sbjct: 459 DTRTLQKEINTITGQLDRQFTVTDDLIFRNAKKDEHAKKAYKLLVTLHSDCAELMALVQE 518

Query: 449 TDRVRREIAEYEKKLAAVASR--SLNVDKLQADVDVIMKENEFLEQQFH 495
           T  V+REI + E ++    SR  + N+ ++  D+  +  E++ LE+   
Sbjct: 519 TGAVKREIRDLEDQIETERSRNTAANLAQICRDLAEMQSESQRLEESLR 567

Culex quinquefasciatus (taxid: 7176)

>sp|Q4V909|CCD22_DANRE Coiled-coil domain-containing protein 22 OS=Danio rerio GN=ccdc22 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 16/214 (7%)

Query: 293 VGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSE 352
           V +    +V+L  QW+  +  L ++ R L+E     E E+  KL +++++  + +    E
Sbjct: 419 VESSSKRVVQLASQWEKHRVPLIDEHRRLKELCSNRESESSRKLSEIKDLHDKIRQSAEE 478

Query: 353 IRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412
            +K+E  Y +L  + E   K  SR +Y  RI EI  N +K   +I +IL +T++LQ E N
Sbjct: 479 AKKKESLYKQLLTEFETLSKDVSRSAYTIRILEIVGNIKKQKEEITKILSDTKDLQKEIN 538

Query: 413 SIQERLHRTYAVVDDMIFREAKKDQSFE--------------QVSEKILATDRVRREIAE 458
            +  +L RT+AV D+++F++AKKD+S                Q+ + I  T  + REI +
Sbjct: 539 GLTGKLDRTFAVTDELVFKDAKKDESVRKSYKYLAALHENCTQLIQTIEDTGTIMREIRD 598

Query: 459 YEKKLAAVASRSL--NVDKLQADVDVIMKENEFL 490
            E+++     +    N++K+  D   I +EN  L
Sbjct: 599 LEEQIETENGKRTVSNLEKILEDYKAIRQENSAL 632

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	762
255563588	472	conserved hypothetical protein [Ricinus	0.580	0.936	0.575	1e-138
225461989	545	PREDICTED: coiled-coil domain-containing	0.601	0.840	0.516	1e-134
449461055	394	PREDICTED: uncharacterized membrane prot	0.353	0.682	0.821	1e-133
449461057	385	PREDICTED: uncharacterized membrane prot	0.347	0.688	0.833	1e-132
15241097	398	Nucleotide/sugar transporter family prot	0.347	0.665	0.830	1e-131
21593061	397	unknown [Arabidopsis thaliana]	0.347	0.667	0.830	1e-131
116831615	399	unknown [Arabidopsis thaliana]	0.347	0.664	0.830	1e-131
255563586	389	organic anion transporter, putative [Ric	0.347	0.681	0.807	1e-130
297796471	398	hypothetical protein ARALYDRAFT_495677 [	0.347	0.665	0.822	1e-130
225461987	383	PREDICTED: uncharacterized membrane prot	0.347	0.691	0.784	1e-124

>gi|255563588|ref|XP_002522796.1| conserved hypothetical protein [Ricinus communis] gi|223538034|gb|EEF39647.1| conserved hypothetical protein [Ricinus communis]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/471 (57%), Positives = 351/471 (74%), Gaps = 29/471 (6%)

Query: 47  ILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKIC 106
           ILL SL++ GVS+P +VSSI+D+  ETLVSI  Q LNL+  T TF +S P S+ +KFKIC
Sbjct: 5   ILLKSLQNAGVSVPGNVSSIRDMKPETLVSISAQCLNLLDQTTTFPSSFPDSLVDKFKIC 64

Query: 107 TDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDV--- 163
           TDI+ A+K LGYIGD++YYKFLYPSEEDL+KL+RFLVERLSEL   VK+ D K ++    
Sbjct: 65  TDIALAVKRLGYIGDMTYYKFLYPSEEDLFKLVRFLVERLSELSNAVKIPDLKDMNAIRI 124

Query: 164 ---RGNIN--KSTLEGNGETDLDHQKIRDQLEECRLENELPQSSNSEDVASDSVSSSRVQ 218
               G+ +  K  +E   +  LD    ++ L++  L+N  P+ S+  +V + S + SR  
Sbjct: 125 IKKDGSTDNLKDYMEKANDKGLDCNHHQENLKDLGLQNVEPEFSDP-NVDNASFTGSRTL 183

Query: 219 DYNKNDVTGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDD 278
            + K+ +TG     I + ++ LQN+ + L+E VTA+ SE+ + EEE+QLLKAA+EMAFDD
Sbjct: 184 SFGKDKLTG-----IADESEILQNQKKFLIEEVTARISEIQNLEEEFQLLKAASEMAFDD 238

Query: 279 SHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLK 338
            HP +FYLEQL++QV ++K N++EL+ QWDA ++ LEEKK SLEESLYAN  EA+ KL K
Sbjct: 239 QHPIDFYLEQLNDQVDSRKLNIMELDSQWDAFRKPLEEKKISLEESLYANIPEAREKLQK 298

Query: 339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIE 398
           LREVELER+S+LSEIR REDE+SKLS DL+KQ  + SR SYIERIKEITKNSRK D DIE
Sbjct: 299 LREVELERESILSEIR-REDEHSKLSVDLKKQSGLPSRTSYIERIKEITKNSRKQDADIE 357

Query: 399 RILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKD--------------QSFEQVSE 444
           RILKETRELQLESNSIQ+RLHRTY V+D+++FREAKK+              + FEQ+SE
Sbjct: 358 RILKETRELQLESNSIQDRLHRTYTVLDELVFREAKKEPVGRQAYRLLTSIHECFEQISE 417

Query: 445 KILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFH 495
           KIL TDR++RE+ E+EKKL A+A+RSLN+DKLQAD+D I KENE L+QQ  
Sbjct: 418 KILLTDRIQREMVEHEKKLTAMATRSLNIDKLQADLDAIRKENENLQQQLQ 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461989|ref|XP_002267477.1| PREDICTED: coiled-coil domain-containing protein 22 [Vitis vinifera] gi|296089961|emb|CBI39780.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/540 (51%), Positives = 353/540 (65%), Gaps = 82/540 (15%)

Query: 41  MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMA 100
           MEES+ ILL+SL S GVSIP  VSSI+DLT  +L SIC QSL+LI NT +F TSLP SMA
Sbjct: 1   MEESQEILLSSLASAGVSIPTSVSSIQDLTPTSLFSICAQSLSLIDNTTSFPTSLPDSMA 60

Query: 101 EKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKG 160
           E+FKICT+I+SA+K+LGY+GD+S++KFLYPSEEDLYKL+RFLVE+L E  +  K A G  
Sbjct: 61  ERFKICTEIASAVKSLGYMGDMSFHKFLYPSEEDLYKLVRFLVEKLPESSEGGKTAGGND 120

Query: 161 VDVRGNINKSTLEG----------NGETDLDHQKIRDQLEECRLENELPQSSNSE----- 205
           +  R  I +  L            N   DL    +  +L++ RL++E+ + S++E     
Sbjct: 121 IWAREKIKEDDLPSTSKHWMEKPDNQGVDLHFPNVGAKLKDLRLKSEVQEFSDNEAENES 180

Query: 206 ---------------DVASDSVSSSRVQDYNKNDVTGVIRG------------------- 231
                           VA   VS    QD +K ++  +  G                   
Sbjct: 181 GTRANKAYSIQQKMDGVAVVDVSIPGTQDLSKKELNSLENGTDLVEKSEDSRRDASGNEE 240

Query: 232 -------------------KIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAA 272
                              KIK+  + L+N+++ L+E V +K  E    EEEY LLK+A 
Sbjct: 241 MSTQRDDKNVLTSFQEQSLKIKSRIEMLRNQEKLLIEEVNSKNLESQHLEEEYNLLKSAM 300

Query: 273 EMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEA 332
           EM FDD HP + Y+EQL+E++ A K NLVELE QW+ L++ LEEKKRSLE S+YA    A
Sbjct: 301 EMEFDDQHPVDLYIEQLNERIEAGKRNLVELESQWETLRKPLEEKKRSLEGSVYATVPGA 360

Query: 333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRK 392
           Q KL KL+EVELE+QS+L EI+KRE+E+SKLSADLEKQPK+ SRRSYI+RI EITKNSRK
Sbjct: 361 QEKLQKLKEVELEKQSILYEIKKREEEHSKLSADLEKQPKLPSRRSYIQRITEITKNSRK 420

Query: 393 VDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKD--------------QS 438
            D DIERILK+TRELQLESNS+QER HRTYAVVD+ IFREAKKD              +S
Sbjct: 421 QDADIERILKDTRELQLESNSVQERHHRTYAVVDETIFREAKKDPVGRQAYMLLTSIHES 480

Query: 439 FEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDG 498
           FEQ++EKILATDR RRE+ E+E KLAA+ASRSLN++KLQAD+D I +ENE LEQ+   D 
Sbjct: 481 FEQIAEKILATDRTRREVTEHEAKLAAMASRSLNINKLQADLDAIRQENECLEQRLQDDS 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461055|ref|XP_004148259.1| PREDICTED: uncharacterized membrane protein At1g06890-like isoform 1 [Cucumis sativus] gi|449515193|ref|XP_004164634.1| PREDICTED: uncharacterized membrane protein At1g06890-like isoform 1 [Cucumis sativus]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/269 (82%), Positives = 253/269 (94%)

Query: 494 FHRDGRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQV 553
           +   GRALEEIRG+LYNE+RTSDGAKRQQQ+ CGPVVAMTFNF+V+VGII+ NKLVMG+V
Sbjct: 32  YKSTGRALEEIRGSLYNELRTSDGAKRQQQRYCGPVVAMTFNFMVAVGIIMANKLVMGRV 91

Query: 554 GFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTS 613
           GFNFPIFLT+IHY +AW LLAIFKA S++PVSPP  TTPFSSLF+LGVVM+FA+GLANTS
Sbjct: 92  GFNFPIFLTLIHYTIAWFLLAIFKALSLLPVSPPTKTTPFSSLFSLGVVMAFASGLANTS 151

Query: 614 LKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIF 673
           LKHNSVGFYQM+KIAVTPTIV +EFILF KTIS+KKVLAL++VS+GVA+ATVTDLEFN+F
Sbjct: 152 LKHNSVGFYQMAKIAVTPTIVFSEFILFKKTISFKKVLALSVVSIGVAIATVTDLEFNLF 211

Query: 674 GAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFY 733
           GA+IA+AWIIPSAINKILWSNLQQQ +WTALALMWKTTP+T+FFLLALMPWLDPPGVL +
Sbjct: 212 GALIAIAWIIPSAINKILWSNLQQQASWTALALMWKTTPITIFFLLALMPWLDPPGVLSF 271

Query: 734 KWNLNNSSAIFISALLGFLLQWSGALALG 762
           KW+L +S+AI ISALLGFLLQWSGALALG
Sbjct: 272 KWDLGSSTAILISALLGFLLQWSGALALG 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461057|ref|XP_004148260.1| PREDICTED: uncharacterized membrane protein At1g06890-like isoform 2 [Cucumis sativus] gi|449515195|ref|XP_004164635.1| PREDICTED: uncharacterized membrane protein At1g06890-like isoform 2 [Cucumis sativus]

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/265 (83%), Positives = 252/265 (95%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALEEIRG+LYNE+RTSDGAKRQQQ+ CGPVVAMTFNF+V+VGII+ NKLVMG+VGFNF
Sbjct: 27  GRALEEIRGSLYNELRTSDGAKRQQQRYCGPVVAMTFNFMVAVGIIMANKLVMGRVGFNF 86

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT+IHY +AW LLAIFKA S++PVSPP  TTPFSSLF+LGVVM+FA+GLANTSLKHN
Sbjct: 87  PIFLTLIHYTIAWFLLAIFKALSLLPVSPPTKTTPFSSLFSLGVVMAFASGLANTSLKHN 146

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KIAVTPTIV +EFILF KTIS+KKVLAL++VS+GVA+ATVTDLEFN+FGA+I
Sbjct: 147 SVGFYQMAKIAVTPTIVFSEFILFKKTISFKKVLALSVVSIGVAIATVTDLEFNLFGALI 206

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           A+AWIIPSAINKILWSNLQQQ +WTALALMWKTTP+T+FFLLALMPWLDPPGVL +KW+L
Sbjct: 207 AIAWIIPSAINKILWSNLQQQASWTALALMWKTTPITIFFLLALMPWLDPPGVLSFKWDL 266

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
            +S+AI ISALLGFLLQWSGALALG
Sbjct: 267 GSSTAILISALLGFLLQWSGALALG 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241097|ref|NP_200406.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|9758215|dbj|BAB08660.1| unnamed protein product [Arabidopsis thaliana] gi|91807050|gb|ABE66252.1| transporter-like [Arabidopsis thaliana] gi|110740390|dbj|BAF02090.1| hypothetical protein [Arabidopsis thaliana] gi|332009319|gb|AED96702.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 249/265 (93%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALEE+R +LYNE++TS+GAKRQQQ+ CGPVVAM+FNFVV+VGIIL NKLVMG+VGFNF
Sbjct: 27  GRALEELRSSLYNELKTSEGAKRQQQRFCGPVVAMSFNFVVAVGIILANKLVMGRVGFNF 86

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT+IHY VAWILLA FK+ S++P+SPP+ TTPFSSLF+LG VM+FA+GLANTSLKHN
Sbjct: 87  PIFLTLIHYTVAWILLAFFKSLSLLPMSPPSKTTPFSSLFSLGAVMAFASGLANTSLKHN 146

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KIAVTPTIVLAEF+LF KTIS  KV+ALA+VS+GVA+ATVTDLEFN+FGA++
Sbjct: 147 SVGFYQMAKIAVTPTIVLAEFVLFKKTISSTKVMALAVVSLGVAIATVTDLEFNLFGALV 206

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           AVAWIIPSAINKILWSNLQQQ NWTALALMWKTTP TVFFLLALMPWLDPPGVL +KW+L
Sbjct: 207 AVAWIIPSAINKILWSNLQQQANWTALALMWKTTPFTVFFLLALMPWLDPPGVLLFKWDL 266

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
            NSSAI ISALLGFLLQWSGALALG
Sbjct: 267 TNSSAILISALLGFLLQWSGALALG 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593061|gb|AAM65010.1| unknown [Arabidopsis thaliana]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 249/265 (93%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALEE+R +LYNE++TS+GAKRQQQ+ CGPVVAM+FNFVV+VGIIL NKLVMG+VGFNF
Sbjct: 26  GRALEELRSSLYNELKTSEGAKRQQQRFCGPVVAMSFNFVVAVGIILANKLVMGRVGFNF 85

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT+IHY VAWILLA FK+ S++P+SPP+ TTPFSSLF+LG VM+FA+GLANTSLKHN
Sbjct: 86  PIFLTLIHYTVAWILLAFFKSLSLLPMSPPSKTTPFSSLFSLGAVMAFASGLANTSLKHN 145

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KIAVTPTIVLAEF+LF KTIS  KV+ALA+VS+GVA+ATVTDLEFN+FGA++
Sbjct: 146 SVGFYQMAKIAVTPTIVLAEFVLFKKTISSTKVMALAVVSLGVAIATVTDLEFNLFGALV 205

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           AVAWIIPSAINKILWSNLQQQ NWTALALMWKTTP TVFFLLALMPWLDPPGVL +KW+L
Sbjct: 206 AVAWIIPSAINKILWSNLQQQANWTALALMWKTTPFTVFFLLALMPWLDPPGVLLFKWDL 265

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
            NSSAI ISALLGFLLQWSGALALG
Sbjct: 266 TNSSAILISALLGFLLQWSGALALG 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831615|gb|ABK28760.1| unknown [Arabidopsis thaliana]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 249/265 (93%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALEE+R +LYNE++TS+GAKRQQQ+ CGPVVAM+FNFVV+VGIIL NKLVMG+VGFNF
Sbjct: 27  GRALEELRSSLYNELKTSEGAKRQQQRFCGPVVAMSFNFVVAVGIILANKLVMGRVGFNF 86

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT+IHY VAWILLA FK+ S++P+SPP+ TTPFSSLF+LG VM+FA+GLANTSLKHN
Sbjct: 87  PIFLTLIHYTVAWILLAFFKSLSLLPMSPPSKTTPFSSLFSLGAVMAFASGLANTSLKHN 146

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KIAVTPTIVLAEF+LF KTIS  KV+ALA+VS+GVA+ATVTDLEFN+FGA++
Sbjct: 147 SVGFYQMAKIAVTPTIVLAEFVLFKKTISSTKVMALAVVSLGVAIATVTDLEFNLFGALV 206

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           AVAWIIPSAINKILWSNLQQQ NWTALALMWKTTP TVFFLLALMPWLDPPGVL +KW+L
Sbjct: 207 AVAWIIPSAINKILWSNLQQQANWTALALMWKTTPFTVFFLLALMPWLDPPGVLLFKWDL 266

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
            NSSAI ISALLGFLLQWSGALALG
Sbjct: 267 TNSSAILISALLGFLLQWSGALALG 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563586|ref|XP_002522795.1| organic anion transporter, putative [Ricinus communis] gi|223538033|gb|EEF39646.1| organic anion transporter, putative [Ricinus communis]

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/265 (80%), Positives = 249/265 (93%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALE++R ++Y+++RTS+GAKRQQQ+ CGP+VAMTFNF+V+VG+ILTNKLVMGQ+GFNF
Sbjct: 27  GRALEDLRSSVYSDLRTSEGAKRQQQRFCGPIVAMTFNFMVAVGVILTNKLVMGQIGFNF 86

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT IHY  AWILLAIFK  S++P+SPP+ TTPF+SLF+LGVVMSFA+GLAN SL HN
Sbjct: 87  PIFLTFIHYTTAWILLAIFKGLSLLPISPPSKTTPFTSLFSLGVVMSFASGLANASLNHN 146

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KIAVTPTIVLAEF+LF KTIS+KK+L+L +VS GVAVATVTDL+FN+FGA I
Sbjct: 147 SVGFYQMAKIAVTPTIVLAEFVLFRKTISHKKILSLVLVSAGVAVATVTDLQFNLFGACI 206

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           A+AWIIPSAINKILWSNLQQQ NWTALALMWKTTPVT+ FL+ALMPWLDPPGVLF+KWNL
Sbjct: 207 AIAWIIPSAINKILWSNLQQQANWTALALMWKTTPVTILFLVALMPWLDPPGVLFFKWNL 266

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
           +NSSA+FISALLGFLLQWSGALALG
Sbjct: 267 HNSSAVFISALLGFLLQWSGALALG 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796471|ref|XP_002866120.1| hypothetical protein ARALYDRAFT_495677 [Arabidopsis lyrata subsp. lyrata] gi|297311955|gb|EFH42379.1| hypothetical protein ARALYDRAFT_495677 [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/265 (82%), Positives = 248/265 (93%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALEE+R +LYNE++TS+GAKRQQQ+ CGPVVAM+FNF V+VGIIL NKLVMG+VGFNF
Sbjct: 27  GRALEELRSSLYNELKTSEGAKRQQQRFCGPVVAMSFNFFVAVGIILANKLVMGRVGFNF 86

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT+IHY VAWILLA FK+ S++P+SPP+ TTPFSSLF+LG VM+FA+GLANTSLKHN
Sbjct: 87  PIFLTLIHYTVAWILLAFFKSLSLLPMSPPSKTTPFSSLFSLGAVMAFASGLANTSLKHN 146

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KIAVTPTIVLAEF+LF KTIS  KV+ALA+VS+GVA+ATVTDLEFN+FGA++
Sbjct: 147 SVGFYQMAKIAVTPTIVLAEFVLFKKTISSTKVMALAVVSLGVAIATVTDLEFNLFGALV 206

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           AVAWIIPSAINKILWSNLQQQ NWTALALMWKTTP TVFFLLALMPWLDPPGVL +KW+L
Sbjct: 207 AVAWIIPSAINKILWSNLQQQANWTALALMWKTTPFTVFFLLALMPWLDPPGVLLFKWDL 266

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
            NSSAI +SALLGFLLQWSGALALG
Sbjct: 267 ANSSAILVSALLGFLLQWSGALALG 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461987|ref|XP_002267430.1| PREDICTED: uncharacterized membrane protein At1g06890 [Vitis vinifera] gi|296089960|emb|CBI39779.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/265 (78%), Positives = 242/265 (91%)

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
           GRALEE+R +LYNE+RTS+GAKRQQQ+ CGPVVAMTFNF+V+VGIIL NKLV+G++GFNF
Sbjct: 27  GRALEELRSSLYNELRTSEGAKRQQQRCCGPVVAMTFNFMVAVGIILANKLVLGKIGFNF 86

Query: 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
           PIFLT+IHY  AWI +AIFK  +++PVSPP+ TTPFSSLF LG VM+ +TGLANTSLK N
Sbjct: 87  PIFLTLIHYFTAWIFMAIFKGLALLPVSPPSKTTPFSSLFFLGAVMALSTGLANTSLKFN 146

Query: 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
           SVGFYQM+KI+VTPTIVLAEFIL  KT+S+KKVLAL++VS+GVA+ATV DLEFN+FGA I
Sbjct: 147 SVGFYQMAKISVTPTIVLAEFILLKKTVSFKKVLALSVVSIGVAIATVADLEFNMFGACI 206

Query: 678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
           A+ WIIPSAINKILWSNLQQQ NWTALALMWKTTPVT+FFLLALMPWLDPPG L + W++
Sbjct: 207 AILWIIPSAINKILWSNLQQQSNWTALALMWKTTPVTIFFLLALMPWLDPPGALSFVWDV 266

Query: 738 NNSSAIFISALLGFLLQWSGALALG 762
           +N+SAI ISALLGFLLQWSGALALG
Sbjct: 267 SNASAILISALLGFLLQWSGALALG 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	762
TAIR|locus:2178373	398	AT5G55950 [Arabidopsis thalian	0.347	0.665	0.830	4.7e-119
TAIR|locus:2175569	390	AT5G57100 "AT5G57100" [Arabido	0.372	0.728	0.6	2.7e-93
UNIPROTKB|O60826	627	CCDC22 "Coiled-coil domain-con	0.343	0.417	0.267	5.8e-32
MGI|MGI:1859608	627	Ccdc22 "coiled-coil domain con	0.313	0.381	0.280	7e-32
UNIPROTKB|A7RNG8	644	v1g180167 "Coiled-coil domain-	0.334	0.395	0.266	4.3e-31
UNIPROTKB|Q28G12	632	ccdc22 "Coiled-coil domain-con	0.313	0.378	0.248	3.7e-30
UNIPROTKB|Q6PA15	632	ccdc22 "Coiled-coil domain-con	0.265	0.319	0.261	3.3e-28
ZFIN|ZDB-GENE-050913-93	639	ccdc22 "coiled-coil domain con	0.316	0.377	0.267	5.5e-27
UNIPROTKB|B0WTU5	571	CPIJ010681 "Coiled-coil domain	0.312	0.416	0.269	5.9e-27
TAIR|locus:2033097	357	AT1G06890 [Arabidopsis thalian	0.311	0.663	0.301	1.3e-25

TAIR|locus:2178373 AT5G55950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 220/265 (83%), Positives = 249/265 (93%)

Query:   498 GRALEEIRGALYNEIRTSDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNF 557
             GRALEE+R +LYNE++TS+GAKRQQQ+ CGPVVAM+FNFVV+VGIIL NKLVMG+VGFNF
Sbjct:    27 GRALEELRSSLYNELKTSEGAKRQQQRFCGPVVAMSFNFVVAVGIILANKLVMGRVGFNF 86

Query:   558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617
             PIFLT+IHY VAWILLA FK+ S++P+SPP+ TTPFSSLF+LG VM+FA+GLANTSLKHN
Sbjct:    87 PIFLTLIHYTVAWILLAFFKSLSLLPMSPPSKTTPFSSLFSLGAVMAFASGLANTSLKHN 146

Query:   618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAII 677
             SVGFYQM+KIAVTPTIVLAEF+LF KTIS  KV+ALA+VS+GVA+ATVTDLEFN+FGA++
Sbjct:   147 SVGFYQMAKIAVTPTIVLAEFVLFKKTISSTKVMALAVVSLGVAIATVTDLEFNLFGALV 206

Query:   678 AVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNL 737
             AVAWIIPSAINKILWSNLQQQ NWTALALMWKTTP TVFFLLALMPWLDPPGVL +KW+L
Sbjct:   207 AVAWIIPSAINKILWSNLQQQANWTALALMWKTTPFTVFFLLALMPWLDPPGVLLFKWDL 266

Query:   738 NNSSAIFISALLGFLLQWSGALALG 762
              NSSAI ISALLGFLLQWSGALALG
Sbjct:   267 TNSSAILISALLGFLLQWSGALALG 291

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2175569 AT5G57100 "AT5G57100" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 174/290 (60%), Positives = 230/290 (79%)

Query:   476 LQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQ---KICGPVVAM 532
             L+ DV  I+K  +       R G+ALE++R +L+N  R+ +  KRQQQ   +ICGP VA+
Sbjct:    12 LRQDVKKILKRKD--SDAGER-GKALEDLRASLFNRFRSPETPKRQQQQQHRICGPTVAL 68

Query:   533 TFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTP 592
             TFNFVV++ II  NK V+  +GF FP+FLT IHY VA++L+A+ K+FS++P SPP+  + 
Sbjct:    69 TFNFVVAISIIFMNKWVLKNIGFEFPVFLTFIHYIVAYLLMALLKSFSLLPASPPSTKSS 128

Query:   593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLA 652
                L+ LG+VMS +TGLAN SLK+NSVGFYQM+KIAVTP+IV AEF+ + K +S+ KV++
Sbjct:   129 LLPLYTLGIVMSLSTGLANVSLKYNSVGFYQMAKIAVTPSIVFAEFLWYRKRVSFMKVVS 188

Query:   653 LAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTP 712
             L +VSVGVAVATVTDL+F++FGA +A AWIIPSA NKILWSN+QQ+ NWTALALMWKTTP
Sbjct:   189 LTVVSVGVAVATVTDLQFSLFGACVAFAWIIPSATNKILWSNMQQRENWTALALMWKTTP 248

Query:   713 VTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQWSGALALG 762
             +T+ FL++++P+LDPPG L + W+L N+SAI +SALLGF LQWSGALALG
Sbjct:   249 ITLLFLVSMIPFLDPPGALSFNWSLTNTSAILVSALLGFFLQWSGALALG 298

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|O60826 CCDC22 "Coiled-coil domain-containing protein 22" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
 Identities = 76/284 (26%), Positives = 134/284 (47%)

Query:   222 KNDVTGVIRGKIKNHADNLQNRDESLMEAVT-AKTSELCDPEEEYQL-LKAAAEMAFDDS 279
             +  + GV R   +  AD ++    S ++A +  + S+L   E E  L LK+ A     D 
Sbjct:   338 REQLEGVNRSIEEVEAD-MKTLGVSFVQAESECRHSKLSTAEREQALRLKSRAVELLPDG 396

Query:   280 HPTEFYLEQLDEQVGAKKHNLVELELQWDAXXXXXXXXXXXXXXXXYANELEAQAXXXXX 339
                   L +L   V      ++ L  QW+                    ELE+       
Sbjct:   397 TAN---LAKLQLVVENSAQRVIHLAGQWEKHRVPLLAEYRHLRKLQDCRELESSRRLAEI 453

Query:   340 XXXXXXXQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIER 399
                    ++   E R++E+ Y +L ++LE  P+  SR +Y +RI EI  N RK   +I +
Sbjct:   454 QELHQSVRAAAEEARRKEEVYKQLMSELETLPRDVSRLAYTQRILEIVGNIRKQKEEITK 513

Query:   400 ILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKD--------------QSFEQVSEK 445
             IL +T+ELQ E NS+  +L RT+AV D+++F++AKKD              ++  Q+ + 
Sbjct:   514 ILSDTKELQKEINSLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQT 573

Query:   446 ILATDRVRREIAEYEKKLAA-VASRSL-NVDKLQADVDVIMKEN 487
             I  T  + RE+ + E+++   +  ++L N++K++ D   + +EN
Sbjct:   574 IEDTGTIMREVRDLEEQIETELGKKTLSNLEKIREDYRALRQEN 617

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1859608 Ccdc22 "coiled-coil domain containing 22" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
 Identities = 73/260 (28%), Positives = 124/260 (47%)

Query:   246 SLMEAVT-AKTSELCDPEEEYQL-LKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVEL 303
             +L++  T  + SEL   E+E  L LK+       D       L +L   V +    L+ L
Sbjct:   361 NLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAAN---LAKLQLVVESSAQRLIHL 417

Query:   304 ELQWDAXXXXXXXXXXXXXXXXYANELEAQAXXXXXXXXXXXXQSVLSEIRKREDEYSKL 363
               QW+                    ELE+              ++   E R++E+ Y +L
Sbjct:   418 ASQWEKHRVPLLAEYRHLRRLQDCRELESSRRLAEIQELHHSVRAAAEEARRKEEVYKQL 477

Query:   364 SADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYA 423
              ++LE  PK  SR +Y +RI EI  N RK   +I +IL +T+ELQ E NS+  +L RT+A
Sbjct:   478 VSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFA 537

Query:   424 VVDDMIFREAKKD--------------QSFEQVSEKILATDRVRREIAEYEKKLAA-VAS 468
             V D+++F++AKKD              ++  Q+ + I  T  + RE+ + E+++   +  
Sbjct:   538 VTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQIETEMGK 597

Query:   469 RSL-NVDKLQADVDVIMKEN 487
             ++L N++K+  D   + +EN
Sbjct:   598 KTLSNLEKICEDYRALRQEN 617

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A7RNG8 v1g180167 "Coiled-coil domain-containing protein 22 homolog" [Nematostella vectensis (taxid:45351)]

 Score = 227 (85.0 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
 Identities = 75/281 (26%), Positives = 129/281 (45%)

Query:   230 RGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQL 289
             + +IK     LQ  +E     VTA   +  + EE Y++ K   ++  D     E  + +L
Sbjct:   366 KSEIKTMNAGLQQTNEQ----VTATKVQNSEHEESYKVKKRTVDLLPD----AENNIAKL 417

Query:   290 DEQVGAKKHNLVELELQWDAXXXXXXXXXXXXXXXXYANEL-EAQAXXXXXXXXXXXXQS 348
                V +    LV L  QW+                  AN++ E Q             + 
Sbjct:   418 QGVVDSSSQRLVNLAQQWETHRTALIDEYRELKVIN-ANKVSETQKKLEEIKSLREKMKE 476

Query:   349 VLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQ 408
             V  E R ++D Y +L ++ E+  +  +R +Y  RI EI  N +K   +I +IL +T+ +Q
Sbjct:   477 VAEETRGKDDLYKQLVSEYERMSRDVNRSAYTRRILEIVGNIKKQKEEINKILVDTKSVQ 536

Query:   409 LESNSIQERLHRTYAVVDDMIFREAKKDQS-----------FEQVSEKILA---TDRVRR 454
              E N +  +L RT+ V D++IFR+AKKD++            E   E I A   T  + R
Sbjct:   537 KEINQLSGKLDRTFTVTDELIFRDAKKDEACRKAYKYLASLHENCKELIQAVEDTGVIMR 596

Query:   455 EIAEYEKKLAAVASRSL--NVDKLQADVDVIMKENEFLEQQ 493
             EI + E+++   + R+   N++++ AD   + +EN  L ++
Sbjct:   597 EIRDLEEQIDTESQRNTANNLERITADHKQMKEENATLTKK 637

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q28G12 ccdc22 "Coiled-coil domain-containing protein 22" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 223 (83.6 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
 Identities = 64/258 (24%), Positives = 116/258 (44%)

Query:   246 SLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELEL 305
             S +E    +  + C+ +E+   +K  A     D+      L +L   V A  H +  L  
Sbjct:   368 SQVEGEVNEMRQSCEEKEKIVRVKKRAVELLPDADNN---LVKLQALVDASSHRMANLVG 424

Query:   306 QWDAXXXXXXXXXXXXXXXXYANELEAQAXXXXXXXXXXXXQSVLSEIRKREDEYSKLSA 365
             QW++                   E E+              +    E +++E+ Y +L +
Sbjct:   425 QWESHQVRLSEEYRELKRVQQEQEDESSRWMKDAKDLYEKIRGAADEAKRKEELYKQLLS 484

Query:   366 DLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVV 425
             + E  PK  SR +Y +RI EI  N +K   +I +IL +T+ELQ E N++  ++ RT+ V 
Sbjct:   485 EYESLPKEVSRAAYTQRILEIVSNIKKQKEEITKILSDTKELQKEINNLTGKVDRTFVVT 544

Query:   426 DDMIFREAKKDQ--------------SFEQVSEKILATDRVRREIAEYEKKLAAVASRSL 471
             D+++F++AKKD+              +  Q+ + I  T  + REI + E+++    ++  
Sbjct:   545 DELVFKDAKKDEPVRKAYKYLAALHENCSQLIQTIEDTGTILREIRDLEEQIETETTKKT 604

Query:   472 --NVDKLQADVDVIMKEN 487
               N+ K+  D   I +EN
Sbjct:   605 LSNLQKILEDYRAIKQEN 622

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6PA15 ccdc22 "Coiled-coil domain-containing protein 22" [Xenopus laevis (taxid:8355)]

 Score = 212 (79.7 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
 Identities = 57/218 (26%), Positives = 101/218 (46%)

Query:   286 LEQLDEQVGAKKHNLVELELQWDAXXXXXXXXXXXXXXXXYANELEAQAXXXXXXXXXXX 345
             L++L   V A    +  L  QW++                   E E+             
Sbjct:   405 LDKLQTLVDASAQRMANLIGQWESHQARLSDEYMELNRVQQEQEDESSRWMKDAKDLYEK 464

Query:   346 XQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETR 405
              Q    E +++E+ Y +L ++ E  PK  SR +Y +RI EI  N +K   +I +IL +T+
Sbjct:   465 IQGSADEAKRKEELYKQLLSEYESLPKEVSRAAYTQRILEIVSNIKKQKEEITKILSDTK 524

Query:   406 ELQLESNSIQERLHRTYAVVDDMIFREAKKDQ--------------SFEQVSEKILATDR 451
             ELQ E N++  ++ RT+ V D+++F++AKKD+              +  Q+ + I  T  
Sbjct:   525 ELQKEINNLTGKVDRTFVVTDELVFKDAKKDEPVRKAYKYLAALHENCSQLIQTIEDTGT 584

Query:   452 VRREIAEYEKKLAAVASRSL--NVDKLQADVDVIMKEN 487
             + REI + E+++    ++    N+ K+  D   I +EN
Sbjct:   585 ILREIRDLEEQIETETTKKTLSNLQKILEDYRAIKQEN 622

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050913-93 ccdc22 "coiled-coil domain containing 22" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 5.5e-27, Sum P(2) = 5.5e-27
 Identities = 70/262 (26%), Positives = 115/262 (43%)

Query:   254 KTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDAXXXX 313
             +T E+ + E E  +         D     E  L +L   V +    +V+L  QW+     
Sbjct:   382 QTREVTNAERENSV--KIKRQTIDLLPDAENNLLKLQSLVESSSKRVVQLASQWEKHRVP 439

Query:   314 XXXXXXXXXXXXYANELEAQAXXXXXXXXXXXXQSVLSEIRKREDEYSKLSADLEKQPKV 373
                            E E+              +    E +K+E  Y +L  + E   K 
Sbjct:   440 LIDEHRRLKELCSNRESESSRKLSEIKDLHDKIRQSAEEAKKKESLYKQLLTEFETLSKD 499

Query:   374 ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREA 433
              SR +Y  RI EI  N +K   +I +IL +T++LQ E N +  +L RT+AV D+++F++A
Sbjct:   500 VSRSAYTIRILEIVGNIKKQKEEITKILSDTKDLQKEINGLTGKLDRTFAVTDELVFKDA 559

Query:   434 KKDQSFEQVSEKILA---------------TDRVRREIAEYEKKLAAV-ASRSL-NVDKL 476
             KKD+S  + S K LA               T  + REI + E+++      R++ N++K+
Sbjct:   560 KKDESVRK-SYKYLAALHENCTQLIQTIEDTGTIMREIRDLEEQIETENGKRTVSNLEKI 618

Query:   477 QADVDVIMKENEFLEQQFHRDG 498
               D   I +EN  L  +  R+G
Sbjct:   619 LEDYKAIRQENSALAAKI-REG 639

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B0WTU5 CPIJ010681 "Coiled-coil domain-containing protein 22 homolog" [Culex quinquefasciatus (taxid:7176)]

 Score = 219 (82.2 bits), Expect = 5.9e-27, Sum P(2) = 5.9e-27
 Identities = 71/263 (26%), Positives = 129/263 (49%)

Query:   247 LMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQ 306
             L E   A   +L D ++    +K    +  +D  P E  + +L   +GA    + +L+ Q
Sbjct:   310 LCEVQRAAVGKLKDEKK----IKERTHILLED--P-EVNVRKLQGIIGAGGERMKKLQDQ 362

Query:   307 WDAXXXXXXXXXXXXXXXXYANEL-EAQAXXXXXXXXXXXXQSVLSEIRKREDEYSKLSA 365
             WD                 ++++L ++Q             + V+ +++ +   +++L  
Sbjct:   363 WDVHRIPLEQELEGYRVK-HSDKLSQSQQIVDQIEATRHKSEEVMMDLQTKSAMHARLQK 421

Query:   366 DLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVV 425
             +LEK  +  SR +Y  RI EI  N RK  TDI++IL++TR LQ E N+I  +L R + V 
Sbjct:   422 ELEKLNRTVSRTAYTSRILEIVGNIRKQKTDIDKILQDTRTLQKEINTITGQLDRQFTVT 481

Query:   426 DDMIFREAKKDQSFEQVSE----------KILA----TDRVRREIAEYEKKLAAVASRSL 471
             DD+IFR AKKD+  ++  +          +++A    T  V+REI + E ++    SR+ 
Sbjct:   482 DDLIFRNAKKDEHAKKAYKLLVTLHSDCAELMALVQETGAVKREIRDLEDQIETERSRNT 541

Query:   472 --NVDKLQADVDVIMKENEFLEQ 492
               N+ ++  D+  +  E++ LE+
Sbjct:   542 AANLAQICRDLAEMQSESQRLEE 564

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033097 AT1G06890 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 77/255 (30%), Positives = 132/255 (51%)

Query:   515 SDGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLA 574
             S+G K Q     G + A++ + V SV I++ NK ++  +GF F   LT  H  V +  L 
Sbjct:     2 SEGQKFQ----LGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLH 57

Query:   575 I---FKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTP 631
             +    K F   P  P A+          G++   + GL N SL  NSVGFYQM+K+A+ P
Sbjct:    58 VALWMKMFEHKPFDPRAV-------MGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIP 110

Query:   632 TIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKIL 691
               VL E + F K  S K   +L I+ +GV +ATVTDL+ N+ G+++++  ++ + + +I+
Sbjct:   111 CTVLLETLFFRKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIM 170

Query:   692 WSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDP----PGVLFYKWNLNNSSAIFISA 747
              + +Q++   ++  L++++ P     L    P+LD       V  +K+       I +S 
Sbjct:   171 TNTIQKKFKVSSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSC 230

Query:   748 LLGFLLQWSGALALG 762
             L+   + +S  L +G
Sbjct:   231 LISVSVNFSTFLVIG 245

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	762
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	3e-35
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	5e-24
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR00817	302	TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	1e-04
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
pfam05622	713	pfam05622, HOOK, HOOK protein	5e-04
cd06550	261	cd06550, TM_ABC_iron-siderophores_like, Transmembr	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
pfam08449	303	pfam08449, UAA, UAA transporter family	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score =  140 bits (355), Expect = 3e-35
 Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 22/249 (8%)

Query: 229 IRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQ 288
           +  +IK  A  ++  +E L   V  +  EL   EEEY++ K   E+  D  +     + +
Sbjct: 289 VLSEIKALASKIKQVNEEL-TTVRQENEEL---EEEYKIKKRTVELLPDAENN----VAK 340

Query: 289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQS 348
           L   V A    L+EL  QW+A +  L ++ RSL+E     E E Q +L +++++  + + 
Sbjct: 341 LQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEE 400

Query: 349 VLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQ 408
           + SE++ +E  Y +L  + E  PK  SR +Y  RI EI KN +K   DI++IL +TR LQ
Sbjct: 401 LESELQTKEQLYKQLLDEYENAPKSVSRSAYTRRILEIIKNIKKQKEDIDKILSDTRSLQ 460

Query: 409 LESNSIQERLHRTYAVVDDMIFREAKKDQS--------------FEQVSEKILATDRVRR 454
            E N+I  +L RT+ V D+++FR+AKKD+                 ++ E +  T  ++R
Sbjct: 461 KEINNITGKLDRTFTVTDELLFRDAKKDEHAKKAYKLLAALHENCSELIETVEETGNIKR 520

Query: 455 EIAEYEKKL 463
           EI + E+++
Sbjct: 521 EIRDLEEQI 529

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score =  106 bits (267), Expect = 5e-24
 Identities = 87/438 (19%), Positives = 177/438 (40%), Gaps = 44/438 (10%)

Query: 41  MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTM--TFGTSLPHS 98
           M+E++ I+++SL+  G  I  +V S+   T+E LV    + L +I   +      +LP S
Sbjct: 1   MDEADGIIIHSLRQIGCDIDEEVQSLSQFTTELLVRAVSRCLRVIDPDLGKDLPRTLPPS 60

Query: 99  MAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADG 158
           MA +F++ T ++ A +++GY G+I Y  FLYP+  ++  ++ FL+E+   LP++ +V   
Sbjct: 61  MAARFRVATSLAEACQDVGYRGEIGYQTFLYPNVAEIRAVLMFLLEK---LPRE-RVDAA 116

Query: 159 KGVDVRGNINKSTLEGNGETDLDHQKIRDQLEECRLENELPQSS----NSEDVASDSVSS 214
               V   ++ S L           +I   L+       +PQ          + S+S   
Sbjct: 117 DAEAVSQPLSSSQLLER--------RIAQSLKAQLKLPWVPQFCRVVVAPSLLESNSSRL 168

Query: 215 SRVQ----DYNKNDVTG---VIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQL 267
           S  Q    ++N   +       R ++   A     +        ++   +L D   +++L
Sbjct: 169 SFAQEWRLEWNSQGLEDYRKRKRQRLDQKAAEYLRQAAQAGTTGSSSADDLADLLSKFRL 228

Query: 268 LKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYA 327
                   F  +   E       E   A+     +   + +A  E+L+E+   LE S   
Sbjct: 229 DSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELESS--I 286

Query: 328 NELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEIT 387
            E+ ++ K L          S + ++ +      + + +LE++ K+  R   +  + +  
Sbjct: 287 EEVLSEIKALA---------SKIKQVNEELTTVRQENEELEEEYKIKKRTVEL--LPDAE 335

Query: 388 KNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKIL 447
            N  K+   +    +   EL  +  + +  L   Y  + +    +  + Q      +K+ 
Sbjct: 336 NNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKL- 394

Query: 448 ATDRVRREIAEYEKKLAA 465
                R +I E E +L  
Sbjct: 395 -----RNKIEELESELQT 407

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 67/315 (21%), Positives = 132/315 (41%), Gaps = 41/315 (13%)

Query: 179 DLDHQK--IRDQLEECRLENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKIKNH 236
           +L+ +   +RD+LEECR+       +++E+  S    +  +++  +         +++  
Sbjct: 318 ELEDRDEELRDRLEECRVA----AQAHNEEAESLREDADDLEERAE---------ELREE 364

Query: 237 ADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAK 296
           A  L++  E   EAV  +  E+ + EEE + L+     A  D    E +LE+L E+    
Sbjct: 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424

Query: 297 KHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREV--ELERQSVLSEIR 354
           +    ELE      +E +EE +  LE               K  E    +E    +  I 
Sbjct: 425 REREAELEATLRTARERVEEAEALLEAG-------------KCPECGQPVEGSPHVETIE 471

Query: 355 KREDEYSKLSADLEK-QPKVASRRSYIERIKEITKNSRKVDTDIERI-----LKETRELQ 408
           +  +   +L A+LE  + +V      +ER +++ +   +++   ER      L   R   
Sbjct: 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRET 531

Query: 409 LESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVAS 468
           +E     ER         ++   EA+ ++  E  +E     +  R E+AE   KLA +  
Sbjct: 532 IEEKR--ERAEELRERAAEL---EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586

Query: 469 RSLNVDKLQADVDVI 483
           R  ++++++  +  I
Sbjct: 587 RIESLERIRTLLAAI 601

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 23/256 (8%)

Query: 239 NLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKH 298
            L+   E L + + A  +E+   E++ Q+L+             E  LE+L+ ++     
Sbjct: 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 299 NLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358
            L ELE       E L+E+  SLE  L   ELEA+ + L+ R  ELE Q     +     
Sbjct: 338 ELAELE----EKLEELKEELESLEAEL--EELEAELEELESRLEELEEQ-----LETLRS 386

Query: 359 EYSKLSADLEKQPKVASRRSYIE-RIKEITKNSRKVDTDIERILK-----ETRELQLESN 412
           + ++L   +       +    +E R++ +     ++  +IE +LK     E +ELQ E  
Sbjct: 387 KVAQLELQIASL---NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443

Query: 413 SIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLN 472
            ++E L      ++ +     +  +  E+  + + A     RE+A+ + +L ++     N
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAA---ERELAQLQARLDSLERLQEN 500

Query: 473 VDKLQADVDVIMKENE 488
           ++     V  ++K   
Sbjct: 501 LEGFSEGVKALLKNQS 516

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 5/189 (2%)

Query: 555 FNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSL 614
           F +P F T+I  AV   L  +    S +P      +     L  + +V +     +N SL
Sbjct: 28  FPYPYFKTLISLAVG-SLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSL 86

Query: 615 KHNSVGFYQMSKIAVTP--TIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNI 672
              +V F    K A+ P  ++VL+ F L  +       L+L  +  GVA+A+ T+L FN 
Sbjct: 87  SKVAVSFTHTIK-AMEPFFSVVLSAFFL-GQEFPSTLWLSLLPIVGGVALASDTELSFNW 144

Query: 673 FGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF 732
            G + A+   I      I         +     L    + +++F L       + P  L 
Sbjct: 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLP 204

Query: 733 YKWNLNNSS 741
           + +    S 
Sbjct: 205 HGFMQAISG 213

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 42/237 (17%), Positives = 94/237 (39%), Gaps = 35/237 (14%)

Query: 299 NLVELELQWDALKESLEEKKRSLEESLYANELEAQAKL------LKLREVELERQSVLSE 352
           NL  LE   D L E        LE  L    LE QA+       LK    ELE   ++  
Sbjct: 187 NLDRLE---DILNE--------LERQL--KSLERQAEKAERYKELKAELRELELALLVLR 233

Query: 353 IRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412
           + +  +E  +L  +L++           E ++E+T   ++++  +E +  E  EL+ E  
Sbjct: 234 LEELREELEELQEELKE---------AEEELEELTAELQELEEKLEELRLEVSELEEEIE 284

Query: 413 SIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILAT----DRVRREIAEYEKKLAAVAS 468
            +Q+ L+     +  +  ++    +    +  ++       + +  ++ E  ++LA +  
Sbjct: 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344

Query: 469 RSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQKI 525
           +   + +    ++  ++E E   ++       LEE    L +++      + Q   +
Sbjct: 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV---AQLELQIASL 398

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 52.3 bits (125), Expect = 1e-06
 Identities = 48/256 (18%), Positives = 97/256 (37%), Gaps = 27/256 (10%)

Query: 261 PEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRS 320
           P ++Y  L   A M F          E L  +          +   +   K+ LE++ + 
Sbjct: 174 PLDQYTQL---ALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH 230

Query: 321 LEESLYANELEAQAKL---LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRR 377
           L E+L     ++ A L    + +E +L++Q +L ++R R +E     A LE+  +  +R 
Sbjct: 231 LREAL-QQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA 289

Query: 378 SYIERIKEITKNSRKVDTDIERILKETRE--------------LQLESNSIQE--RLHRT 421
                +    K   +++   +RI  E +                  + +SI+E  RL +T
Sbjct: 290 RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349

Query: 422 YAVVDDMIFREAKKDQSFEQVSEKILA-TDRVR---REIAEYEKKLAAVASRSLNVDKLQ 477
               +  I    +   S  ++S +    T  +    ++     +KL ++      + + Q
Sbjct: 350 LHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQ 409

Query: 478 ADVDVIMKENEFLEQQ 493
           A +D        L+ Q
Sbjct: 410 ATIDTRTSAFRDLQGQ 425

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 59/305 (19%), Positives = 118/305 (38%), Gaps = 51/305 (16%)

Query: 240 LQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAK--- 296
           L    E+L     A   +L   EEE + L              E  LE+L++++      
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287

Query: 297 -----KHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLL-------------K 338
                K  + ELE +  +L+ S+ EK+R LE+   A E  A+ +               +
Sbjct: 288 EQLRVKEKIGELEAEIASLERSIAEKERELED---AEERLAKLEAEIDKLLAEIEELERE 344

Query: 339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPK--------VASRR----SYIERIKEI 386
           + E    R  +  E  + ++E   L A+LE+  K        +   R         I E+
Sbjct: 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404

Query: 387 TKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKI 446
            +   ++  +++R+ +E  +L      I+ +++      +D      K++   EQ++  +
Sbjct: 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL 464

Query: 447 LATD----RVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALE 502
              +     ++ E    EK+L+ +      + + +A             ++  R GRA+E
Sbjct: 465 SKYEQELYDLKEEYDRVEKELSKLQRE---LAEAEAQARAS--------EERVRGGRAVE 513

Query: 503 EIRGA 507
           E+  A
Sbjct: 514 EVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 57/334 (17%), Positives = 135/334 (40%), Gaps = 31/334 (9%)

Query: 177  ETDLDHQKIRDQLEECRLENELPQ---SSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKI 233
                + + + D LEE R + E  +        ++A+      ++Q   +         ++
Sbjct: 692  SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE--LEEL 749

Query: 234  KNHADNLQ---NRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLD 290
            +   + LQ      E  +E++    ++L +  EE +  + A +   ++        E+  
Sbjct: 750  EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809

Query: 291  EQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYA-----NELEAQAKLLK--LREVE 343
            + +  +  +L +   + +   E LEE+   LEE L        ELE + + LK  L E+E
Sbjct: 810  DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 344  LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKE 403
             E++ +  E+++ E+E  +L  +L +             + E+ +   K+   +E +  +
Sbjct: 870  AEKEELEDELKELEEEKEELEEELREL---------ESELAELKEEIEKLRERLEELEAK 920

Query: 404  TRELQLESNSIQERLHRTY-----AVVDDMIFREAKKDQSFEQVSEKILAT-DRVRREIA 457
               L++E   ++E L   Y       ++  I R  ++ ++   V+ + +   + V     
Sbjct: 921  LERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYE 980

Query: 458  EYEKKLAAVASRSLNVDKLQADVDVIMKENEFLE 491
            E + +   +      + ++  ++D   +E  F E
Sbjct: 981  ELKSQREDLEEAKEKLLEVIEELDKEKRE-RFKE 1013

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 4e-06
 Identities = 57/268 (21%), Positives = 126/268 (47%), Gaps = 8/268 (2%)

Query: 261 PEEEYQLLKAAAEMA-FDDS-HPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKK 318
           PEE  +L++ AA ++ + +     E  LE+ +E +   +  L ELE Q + L+   E+ +
Sbjct: 154 PEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE 213

Query: 319 RSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL-EKQPKVASRR 377
           R  E      ELE    L KL+E+  E + +  E+ + E+E  +L  +L E + ++   +
Sbjct: 214 RYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELK 273

Query: 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQ 437
                ++E+ +   ++  ++  + +E  EL+ E + ++ERL      ++++  R  +  +
Sbjct: 274 ---SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 438 SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRD 497
             E + E++   + +  E+ +   +L          +KL A ++ + +  E L ++    
Sbjct: 331 KIEALKEELEERETLLEELEQLLAELEEAKEE--LEEKLSALLEELEELFEALREELAEL 388

Query: 498 GRALEEIRGALYNEIRTSDGAKRQQQKI 525
              L EIR  L    R  +  + + +++
Sbjct: 389 EAELAEIRNELEELKREIESLEERLERL 416

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 60/313 (19%)

Query: 232 KIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDE 291
           +++N  + L+ R E L E + A   EL    EE + L    E            L +L+E
Sbjct: 313 ELENELEELEERLEELKEKIEALKEEL----EERETLLEELEQL----------LAELEE 358

Query: 292 QVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLS 351
                     ELE +  AL E LEE   +L E L   E E      +L E++ E +S+  
Sbjct: 359 AKE-------ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 352 EIRKREDEYSKLSADLEKQ-------------------PKVASRRSYIERIKEITKNSRK 392
            + +  +    L  +L++                              +R+KE+ +   +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471

Query: 393 VDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRV 452
           +  +++R+ KE   L+   + ++     +  V   +   E+     +  V+E I    +V
Sbjct: 472 LQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELI----KV 527

Query: 453 RREIAEYEKKLAAVASRSLN---VDKLQADVDVIMKENEFLEQQFHRDGRA----LEEIR 505
           +    +YE  L A     L    V+  +     I    EFL++   + GRA    L+ I+
Sbjct: 528 KE---KYETALEAALGNRLQAVVVENEEVAKKAI----EFLKEN--KAGRATFLPLDRIK 578

Query: 506 GALYNEIRTSDGA 518
                +   + G 
Sbjct: 579 PLRSLKSDAAPGF 591

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 61/338 (18%), Positives = 123/338 (36%), Gaps = 46/338 (13%)

Query: 133 EDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQKIRDQLEEC 192
           E+L + I  L E+++EL K +     +       + +   +   E +   ++I    ++ 
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKE----LEELEEELEQLRKELEELSRQISALRKDL 735

Query: 193 -RLENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKIKNHADNLQNRDES---LM 248
            RLE E+ Q        S  ++    +     +       ++      ++  +     L 
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 249 EAVTAKTSELCDPEEEYQLLKAAA-------EMAFDDSHPTEFYLEQLDEQVGAKKHNLV 301
           E + A    L +   E  LL   A       E        TE  LE L+EQ+     ++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 302 ELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS 361
            L  + + L+E +EE +  LE             LL  R    E       +     E  
Sbjct: 856 SLAAEIEELEELIEELESELEA------------LLNERASLEEA------LALLRSELE 897

Query: 362 KLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRT 421
           +LS +L         R    +  E+ +   ++   + ++      L++  +++QERL   
Sbjct: 898 ELSEEL---------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

Query: 422 YAVV-DDMIFREAKKDQSFEQVSEKILATDRVRREIAE 458
           Y++  ++    E K +   E+   ++    R+  +I E
Sbjct: 949 YSLTLEEAEALENKIEDDEEEARRRL---KRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 66/269 (24%), Positives = 127/269 (47%), Gaps = 51/269 (18%)

Query: 286 LEQLDEQVGAKKHNLVELELQWDALKESLEEKK---RSLEES-------LYA-----NEL 330
           LE+L E++   +  L EL  +   L+E LEE +     LEE        LYA     + L
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300

Query: 331 EAQAKLLKLREVELERQSV-----LSEIRKREDEYSKLSADLEK-----QPKVASRRSYI 380
           E Q ++L+ R   LERQ       L E+  + DE ++  A+LE+     + ++ S  + +
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360

Query: 381 ERIKEITKNS----RKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKD 436
           E ++   +       +++  +E +  +  +L+L+  S+   + R           EA+ +
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL----------EARLE 410

Query: 437 QSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHR 496
           +  ++        +R+++EI E  KKL         + +LQA+++ + +E E L+++  R
Sbjct: 411 RLEDRR-------ERLQQEIEELLKKLE-----EAELKELQAELEELEEELEELQEELER 458

Query: 497 DGRALEEIRGALYNEIRTSDGAKRQQQKI 525
              ALEE+R  L    +  D A+R+  ++
Sbjct: 459 LEEALEELREELEEAEQALDAAERELAQL 487

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 68/289 (23%), Positives = 112/289 (38%), Gaps = 30/289 (10%)

Query: 227 GVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYL 286
           GVI G       ++  R   + E +  K  EL   EE+   L+ A      +       L
Sbjct: 659 GVITGGSAKTNSSILERRREIEE-LEEKIEEL---EEKIAELEKALAELRKE-------L 707

Query: 287 EQLDEQVGAKKHNLVELELQWDALKESLE--EKKRSLEESLYANELEAQAKLLKLREVEL 344
           E+L+E++   +  L EL  Q  AL++ L   E +    E   A   +   +L    E   
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKET 404
           ER   L E  +   E      +LE Q         IE++KE  K  R+   ++   L   
Sbjct: 768 ER---LEEAEEELAEAEAEIEELEAQ---------IEQLKEELKALREALDELRAELTLL 815

Query: 405 RELQLESNSIQERLHRTYAVVDDMI-FREAKKDQSFEQVSEKILATDRVRREIAEYEKKL 463
            E         E L R  A  +  +   E + ++  E +       + +   I E E +L
Sbjct: 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875

Query: 464 AAV----ASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGAL 508
            A+    AS    +  L+++++ + +E   LE +     R LEE+R  L
Sbjct: 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 37/228 (16%), Positives = 92/228 (40%), Gaps = 15/228 (6%)

Query: 286 LEQLDEQVGAKKHNLVELELQWDALKESLE----EKKRSLEESLYANELEAQAKLLKLRE 341
           L  L  ++G  +      E + +A +  L+    E++   +E   A +  A+A+   L  
Sbjct: 83  LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQE-LAR 141

Query: 342 VELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERIL 401
           +  + Q + + ++   ++  +L A  + Q   AS++       ++      +     +I 
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEA--QAQSLQASQKQLQASATQLKSQVLDLKLRSAQIE 199

Query: 402 KETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEK 461
           +E + L   +N+ Q R          +  R A   Q+ + + ++     +  ++IA   +
Sbjct: 200 QEAQNLATRANAAQARTEE-------LARRAAAAQQTAQAIQQRDAQISQKAQQIAARAE 252

Query: 462 KLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHR-DGRALEEIRGAL 508
           ++     +   ++  QA ++  + + E   Q + R   +A    RG +
Sbjct: 253 QIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQV 300

Length = 499

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 536 FVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSS 595
            + ++   L  +L               +   +   LL +   F +     P ++  +  
Sbjct: 164 LLWALYTALVKRLSR------LGPVTLALLLQLLLALLLLL-LFFLSGFGAPILSRAWLL 216

Query: 596 LFALGVVMSF-ATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALA 654
           L  LGV  +  A  L   +L+        +  +       L   +L  + +S  ++L  A
Sbjct: 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAA 276

Query: 655 IVSVGVAVAT 664
           +V +GV +A+
Sbjct: 277 LVVLGVLLAS 286

Length = 292

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 28/240 (11%)

Query: 177  ETDLDH---QKIRDQLEECRLE--------NELPQSSNSEDVASDSVSSSRVQDYNKNDV 225
            E  L H    +I+ +L +   E         E+ Q  N   +  + +     +   +   
Sbjct: 785  EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844

Query: 226  TGVIRGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFY 285
                   I+   +NL  + E L E +    + L D E     LK   +         E  
Sbjct: 845  LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904

Query: 286  LEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELE 345
            +E+L+ Q+  K+  L EL+ + +AL+E L E +    E     + E   + L L +V+ E
Sbjct: 905  IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-----DEEIPEEELSLEDVQAE 959

Query: 346  RQSVLSEIRKRE-------DEYSKLSADL----EKQPKV-ASRRSYIERIKEITKNSRKV 393
             Q V  EIR  E        EY ++   L    EK+ K+   R++ +ERI+E  K  R+V
Sbjct: 960  LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 83/420 (19%), Positives = 160/420 (38%), Gaps = 75/420 (17%)

Query: 124 YYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQ 183
             K L  + E L +L     E + EL +++        +++  + +   E         +
Sbjct: 373 LEKELEKALERLKQLE----EAIQELKEELAELSAALEEIQEELEELEKE--------LE 420

Query: 184 KIRDQLEECR-LENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKIKNHADNLQN 242
           ++  +LEE      +L +  N  +     ++        K  V G    +          
Sbjct: 421 ELERELEELEEEIKKLEEQINQLESKELMIAELAGAG-EKCPVCGQELPE---------E 470

Query: 243 RDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVE 302
            ++ L+E    +  EL   EEE    K  AE+  +         ++L E        L  
Sbjct: 471 HEKELLELYELELEEL---EEELSREKEEAELREEIEE----LEKELRELEEELIELLEL 523

Query: 303 LELQWDALKESLE------EKKRSLEESLYANELEAQAKLLKLREVELE----------- 345
            E   + L+E LE      E+   L+E L   +L+ + + L+ R  EL+           
Sbjct: 524 EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRT 583

Query: 346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETR 405
           R+  L E+R+R  E  K   +LE++          E ++ +  +  +   ++E   +E  
Sbjct: 584 RKEELEELRERLKELKKKLKELEER-----LSQLEELLQSLELSEAE--NELEEAEEELE 636

Query: 406 EL--QLESNSIQER--------LHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRV--- 452
               +L   +  E         L      ++  I RE ++ ++ EQ+ EK+   +++   
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEE 696

Query: 453 ----RREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGAL 508
               R E+ E  KKL  +      ++  +A+++ + KE E LE+        LEE+R  L
Sbjct: 697 LEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL----ELLEELREKL 752

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 45/244 (18%), Positives = 102/244 (41%), Gaps = 22/244 (9%)

Query: 286 LEQLDEQVGAK----KHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLRE 341
            E+L E +       K  + ELE Q   L E +E+   +LEE     EL+   KL +++E
Sbjct: 169 YEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEE-----ELKELKKLEEIQE 223

Query: 342 VELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERIL 401
            E E + +  EI   E+  ++L  + E+  ++ +R   IE ++   +  +  + ++  + 
Sbjct: 224 -EQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLE--LEALKIREEELRELE 280

Query: 402 KETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEK 461
           +   EL+ +   ++E        ++++           E++ E +     +   + + E+
Sbjct: 281 RLLEELEEKIERLEELERE----IEELEEELEGLRALLEELEELLEKLKSLEERLEKLEE 336

Query: 462 KLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQ 521
           KL  + S    + + +       +  + LE++       LEE+   L   +      +  
Sbjct: 337 KLEKLESELEELAEEK------NELAKLLEERLKELEERLEELEKELEKALERLKQLEEA 390

Query: 522 QQKI 525
            Q++
Sbjct: 391 IQEL 394

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 37/291 (12%)

Query: 236 HADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGA 295
           H + ++   E + E      +EL D EEE + ++   E A +D    E  +E+L+E    
Sbjct: 466 HVETIEEDRERVEEL----EAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEE---- 516

Query: 296 KKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRK 355
           ++ +L EL  +     E   E+   L E     E EA+ K     E E E +    E+ +
Sbjct: 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576

Query: 356 REDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN--- 412
              + ++L   +E   ++ +  + I   ++          +IER L+E RE   E N   
Sbjct: 577 LNSKLAELKERIESLERIRTLLAAIADAED----------EIER-LREKREALAELNDER 625

Query: 413 -----SIQERLHRTYAVVDDMIFREAKKD-----QSFEQVSEKILATDRVRREIAEYEKK 462
                  +ER     A  D+    EA++D     +  EQV EK+   D +R E  + + +
Sbjct: 626 RERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKL---DELREERDDLQAE 682

Query: 463 LAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIR 513
           + AV +    +++L+   + +    E LE   + +   LE + G L  E+R
Sbjct: 683 IGAVENELEELEELRERREALENRVEALE-ALYDEAEELESMYGDLRAELR 732

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 69/378 (18%), Positives = 151/378 (39%), Gaps = 32/378 (8%)

Query: 123 SYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDH 182
                L    ED+  L+  L E L EL K  ++ +    +      +  +E   E   + 
Sbjct: 189 ELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE----EQEEEELEQEIEALEERLAEL 244

Query: 183 QKIRDQLEECRLENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGVIRGKIKNHADNLQN 242
           ++ +++LEE +      +S   E     ++     +      +   +  KI+     L+ 
Sbjct: 245 EEEKERLEELKARLLEIESLELE-----ALKIREEELRELERLLEELEEKIER----LEE 295

Query: 243 RDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVE 302
            +  + E             E  + L    E   +     E  LE+L+E++   +  L E
Sbjct: 296 LEREIEELEEE--------LEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEE 347

Query: 303 LELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362
           L  + + L + LEE+ + LEE L   E E +  L +L+++E   Q +  E+ +      +
Sbjct: 348 LAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407

Query: 363 LSADLEKQPKVASRRSYIER-IKEITKNSRKVDTDIERILKETRELQLESN-----SIQE 416
           +  +LE+  K       +ER ++E+ +  +K++  I ++  +   +   +       +  
Sbjct: 408 IQEELEELEK---ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464

Query: 417 RLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVD-K 475
           +        + +   E + ++  E++S +      +R EI E EK+L  +    + +   
Sbjct: 465 QELPEEHEKELLELYELELEELEEELSREKEEA-ELREEIEELEKELRELEEELIELLEL 523

Query: 476 LQADVDVIMKENEFLEQQ 493
            +A  + + ++ E LE  
Sbjct: 524 EEALKEELEEKLEKLENL 541

Length = 908

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 47/227 (20%), Positives = 106/227 (46%), Gaps = 49/227 (21%)

Query: 292 QVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLS 351
           Q+G+KK+N   L+ Q + L+E                 LEA     +++  ELE++  L+
Sbjct: 235 QLGSKKYN--LLQSQLEQLQEENF-------------RLEAARDDYRIKCEELEKE--LA 277

Query: 352 EIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIE---RILKETRELQ 408
           E++ R DE + L+A+        + +  I+ ++E +  ++K++  +E   + L++  +L+
Sbjct: 278 ELQHRNDELTSLAAE------SQALKDEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLR 331

Query: 409 LESNSIQER----LHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLA 464
            +   ++ER    +  T  + +++    A + Q            +  +R++ E   KL+
Sbjct: 332 RQVKLLEERNAMYMQNTVQLEEELKKANAARGQ-----------LETYKRQVQELHAKLS 380

Query: 465 AVASRSLNVD----KLQADVDVIMKENEFLEQQFHRDG--RALEEIR 505
             + ++  ++    +L+  ++ + KE E L  +  RD      EE+R
Sbjct: 381 EESKKADKLEFEYKRLEEKLEALQKEKERLLAE--RDSLRETNEELR 425

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|119348 cd06550, TM_ABC_iron-siderophores_like, Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 34/185 (18%)

Query: 538 VSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLF 597
             +G++L   L +G   +    F      A+A ++L +     + P     I    S+ F
Sbjct: 38  ALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAFF 97

Query: 598 ALGVV-MSFATGLANTSLKHNSVG-FYQMSKIAVTPT-----IVLAEFILFSKT------ 644
           + GV+ +S  +  +   L     G    ++   +        +VL   +L S+       
Sbjct: 98  SAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157

Query: 645 ---------ISYKKV----LALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKIL 691
                    I+   +    L L  + V  AVA V        G I+ V  I P    ++ 
Sbjct: 158 DEDLAKSLGINVNLLRLLLLLLVALLVVAAVALV--------GVILFVGLIAPHLARRLF 209

Query: 692 WSNLQ 696
             + +
Sbjct: 210 GRSHR 214

PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy. Length = 261

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 59/305 (19%), Positives = 122/305 (40%), Gaps = 36/305 (11%)

Query: 230 RGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQL 289
             +I+N  D L       +   + K  E+   E+E + L+   E   +     E  L  L
Sbjct: 697 LRRIENRLDELS----QELSDASRKIGEI---EKEIEQLEQEEEKLKERLEELEEDLSSL 749

Query: 290 DEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANEL-----EAQAKLLKLREVEL 344
           ++++   K  L ELE + + L+E L + + +L + L A        E QA+L KL E   
Sbjct: 750 EQEIENVKSELKELEARIEELEEDLHKLEEALND-LEARLSHSRIPEIQAELSKLEEEVS 808

Query: 345 ERQSVLSEIRKREDE--YSKLSADLEKQPKVASRRSYIERIKEITK---NSRKVDTDIER 399
             ++ L EI ++ +     K   + E Q     R    E+IK I K   N      ++E 
Sbjct: 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868

Query: 400 ILKETR------------------ELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQ 441
            L+E                    EL+ +   ++ ++    A ++    R ++     E 
Sbjct: 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928

Query: 442 VSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRAL 501
           + E++   +  + E  E  ++  ++      + +++ ++  +   N    Q++    + L
Sbjct: 929 LEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL 988

Query: 502 EEIRG 506
           +E++ 
Sbjct: 989 DELKE 993

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 16/224 (7%)

Query: 310 LKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK 369
           LK   +E+K  L+E     + E  ++LLK  EV  E ++ + E+  +  E  +   DL +
Sbjct: 149 LKSKPKERKEILDELFGLEKYEKLSELLK--EVIKEAKAKIEELEGQLSELLEDIEDLLE 206

Query: 370 QPKVASR-RSYIERIKEITKNSRKVD--TDIERILKETRELQLESNSIQERLHRTYAVVD 426
             +   +    +E I+E  +          +E  L E  E +     ++ RL    ++  
Sbjct: 207 ALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLEL 266

Query: 427 DMIFREAKK----DQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDV 482
           + +    ++    ++  E++ EKI   + + REI E E++L         +  L  +++ 
Sbjct: 267 EALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE-------GLRALLEELEE 319

Query: 483 IMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQKIC 526
           ++++ + LE++  +    LE++   L       +   +  ++  
Sbjct: 320 LLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERL 363

Length = 908

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.7 bits (99), Expect = 0.001
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 23/123 (18%)

Query: 295 AKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIR 354
           AKK  + E + + + L  SLEE +R LE+   A E EA      L+E E  ++ +  +  
Sbjct: 507 AKKL-IGEDKEKLNELIASLEELERELEQ--KAEEAEA-----LLKEAEKLKEELEEKKE 558

Query: 355 KREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI 414
           K ++E  KL  + EK+             ++  K ++K     + I+KE R+LQ    + 
Sbjct: 559 KLQEEEDKLLEEAEKE------------AQQAIKEAKKE---ADEIIKELRQLQKGGYAS 603

Query: 415 QER 417
            + 
Sbjct: 604 VKA 606

Length = 782

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 33/212 (15%), Positives = 92/212 (43%), Gaps = 13/212 (6%)

Query: 312 ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQP 371
           + LEE+   LE  L   E E ++   +LR +E   + +  ++ + E +  +L  +L    
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL- 728

Query: 372 KVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFR 431
                     R++E+ +   +++ ++E + +   EL+ E  S++E L +    ++++  +
Sbjct: 729 -EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 432 EAKKDQSFEQVSEKILATDRVRREIAE-----------YEKKLAAVASRSLNVDKLQADV 480
                +  E++ E++   +R    +              E+++  +      +++   ++
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 481 DVIMKENEFLEQQFHRDGRALEEIRGALYNEI 512
           +  ++E E   ++   +   LE  +  L +E+
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDEL 879

Length = 1163

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 64/308 (20%)

Query: 236 HADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGA 295
           +   L+ R +   EA+ +  ++    EE+     A  E              +  E    
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQ------------KRAEAEAR 648

Query: 296 KKHNLVELELQW---------DALKESLEEKKRSLEESLYANELEAQAKLLKLREVELER 346
                  L+LQ          D L+ ++ E+K+  E  L   +L+AQ K L       ++
Sbjct: 649 TALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQL--RQLDAQLKQL-----LEQQ 701

Query: 347 QSVLSEIRKREDEYSKLSADLEKQPK----VASRRSYIERIKE-----ITKNSRKVDTDI 397
           Q+ L  ++   D++ +L    E+  K         + + ++        T+   ++    
Sbjct: 702 QAFLEALK---DDFRELR--TERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKE-- 754

Query: 398 ERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIA 457
              LK+  + +L S  +            + +    ++ +  E   E+I      R E+ 
Sbjct: 755 ---LKKQYDRELASLDVDP----------NTVKELKRQIEELETTIERI---AVRRPEVR 798

Query: 458 EYE----KKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIR 513
           EY     +      S       L   +  +    E L+Q+  R  +  +  R  L  E +
Sbjct: 799 EYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERK 858

Query: 514 TSDGAKRQ 521
             +    Q
Sbjct: 859 ALEKQLDQ 866

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 50/246 (20%), Positives = 83/246 (33%), Gaps = 56/246 (22%)

Query: 267 LLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKE------SLEEKKRS 320
           LL AA   A   +   +  L+Q+ +++ A +    ++  Q D   +      SLE +  S
Sbjct: 21  LLSAAVLAAAFSAAADDKQLKQIQKEIAALEK---KIREQQDQRAKLEKQLKSLETEIAS 77

Query: 321 LEESLYA-----NELEAQ-----AKLLKLREVELERQSVLSEI-----RKREDEYSKLSA 365
           LE  L        +L  Q     A+L  L   E E++  L+E      R   +    L  
Sbjct: 78  LEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPAL-L 136

Query: 366 DLEKQPKVASR---------RSYIERIKEITKNS---RKVDTDIERILKETRELQLESNS 413
              +  + + R          +  ERI  +         V  +I     E   L  E  +
Sbjct: 137 VSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRA 196

Query: 414 IQERLHRTYAVVDDMIFREAKK--------DQSFEQVSEKILA--TDRVRREIAEYEKKL 463
            Q +L +           E +K        + S +Q   + L     R++ EIA  E   
Sbjct: 197 QQAKLAQL---------LEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247

Query: 464 AAVASR 469
           A     
Sbjct: 248 AKAREA 253

Length = 420

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 543 ILTNKLVMGQVGFNFPIFLTVIH--YAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALG 600
           +L   ++  + G  F   LT     +     LL +     + P        P  +   + 
Sbjct: 17  VLQELIMTREYGSPFGNLLTFAQFLFISLVGLLYLLLFKKLKP-----RKIPLKTYVLIV 71

Query: 601 VVMSFATGLANTSLKHNSVGFYQMSKIA-VTPTIVLAEFILFSKTISYKKVLALAIVSVG 659
                ++ L N +LK+ S   + + K   + P ++L   I   K  S  + L+  ++++G
Sbjct: 72  ATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILIY-GKRYSSLQYLSALLITLG 130

Query: 660 VAVAT 664
           V + T
Sbjct: 131 VIIFT 135

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 18/214 (8%)

Query: 299 NLVELELQWDALKESLEE---KKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRK 355
           NL E+  +     E LE+   +  ++EE +   E E +  L ++ E+  E   +  E+ K
Sbjct: 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK 225

Query: 356 REDEYSKLSADLEK----QPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLES 411
            E E  +L    E+    + ++ S      +++E  +   +   ++++ ++E  E   E 
Sbjct: 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285

Query: 412 NSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSL 471
             ++E+      + +   F E   D+  E   EK L+  R+  EI   E+++  +  +  
Sbjct: 286 KELKEKAEEYIKLSE---FYEEYLDELRE--IEKRLS--RLEEEINGIEERIKELEEKEE 338

Query: 472 NVDKLQADVDVIMKENEFLEQQFHRDGRALEEIR 505
            +++L+  +  + K  E LE+         EE +
Sbjct: 339 RLEELKKKLKELEKRLEELEE----RHELYEEAK 368

Length = 880

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 23/212 (10%)

Query: 297 KHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKR 356
           +  +V +E   D  +E   E+ R L   L     +    L KLR         L+ +R+ 
Sbjct: 27  ELGVVHIE---DLKEELSNERLRKLRSLL----TKLSEALDKLRSY----LPKLNPLREE 75

Query: 357 EDEYSKLSAD--LEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQ-LESNS 413
           + + S  S +  ++   +        + IKE+ +   +++ +I+ + +E   L+   +  
Sbjct: 76  KKKVSVKSLEELIKDVEEELE--KIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD 133

Query: 414 IQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNV 473
           +   L   +  V   +F     +   E++  K+ +       I+  +  +  V    + +
Sbjct: 134 LDLSLLLGFKYVS--VFVGTVPEDKLEEL--KLESDVENVEYISTDKGYVYVVV---VVL 186

Query: 474 DKLQADVDVIMKENEFLEQQFHRDGRALEEIR 505
            +L  +V+  +K+  F   +   +G   E IR
Sbjct: 187 KELSDEVEEELKKLGFERLELEEEGTPSELIR 218

Length = 646

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 50/251 (19%), Positives = 109/251 (43%), Gaps = 37/251 (14%)

Query: 286 LEQLDEQVGAKKHNLVELELQWDALKESLEEKK-----RSLEESL---YANELEAQAKLL 337
           L++++E+    +  L ELE       E ++ K+     + LEE L      ELE +A+  
Sbjct: 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527

Query: 338 -----KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRK 392
                KL +++ E +S+  E+ K E+   KL+   +K  ++    +  E +KE+ +   +
Sbjct: 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA--ELLKELEELGFE 585

Query: 393 VDTDIERILKETRELQLESNS----------IQERLHRTYAVVDDMIFREAKKDQSFEQV 442
              ++E  LKE      E              ++ L +    +D      A+ ++  E++
Sbjct: 586 SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645

Query: 443 SEKILAT---------DRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQ 493
            +++            + +R E  E  ++LA + +    +++L+   + I K  E L+++
Sbjct: 646 RKELEELEKKYSEEEYEELREEYLELSRELAGLRAE---LEELEKRREEIKKTLEKLKEE 702

Query: 494 FHRDGRALEEI 504
                +A +E+
Sbjct: 703 LEEREKAKKEL 713

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	762
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	100.0
KOG1937	521	consensus Uncharacterized conserved protein [Funct	100.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	100.0
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.96
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.93
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.89
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.87
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.83
KOG1582	367	consensus UDP-galactose transporter related protei	99.56
KOG1581	327	consensus UDP-galactose transporter related protei	99.55
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.54
KOG1580	337	consensus UDP-galactose transporter related protei	99.48
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.44
PLN00411	358	nodulin MtN21 family protein; Provisional	99.41
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.35
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.34
PRK11272	292	putative DMT superfamily transporter inner membran	99.3
PRK11689	295	aromatic amino acid exporter; Provisional	99.26
PRK15430	296	putative chloramphenical resistance permease RarD;	99.17
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.14
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.14
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.13
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.04
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.97
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.92
KOG2765	416	consensus Predicted membrane protein [Function unk	98.84
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.84
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.81
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.59
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.53
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.34
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.22
KOG2766	336	consensus Predicted membrane protein [Function unk	98.15
COG2962	293	RarD Predicted permeases [General function predict	98.14
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.11
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.09
COG2510	140	Predicted membrane protein [Function unknown]	97.83
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.76
PLN00411	358	nodulin MtN21 family protein; Provisional	97.65
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.6
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.54
PRK11272	292	putative DMT superfamily transporter inner membran	97.53
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.05
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.03
PHA02562	562	46 endonuclease subunit; Provisional	96.97
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.96
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.95
PRK11689	295	aromatic amino acid exporter; Provisional	96.91
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.84
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.83
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.82
PRK02224	880	chromosome segregation protein; Provisional	96.81
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.78
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.77
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.75
PRK03918	880	chromosome segregation protein; Provisional	96.74
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.68
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.67
PHA02562	562	46 endonuclease subunit; Provisional	96.66
PRK02224	880	chromosome segregation protein; Provisional	96.63
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.61
COG2076	106	EmrE Membrane transporters of cations and cationic	96.6
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.6
PRK11431	105	multidrug efflux system protein; Provisional	96.53
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.51
PRK01156	895	chromosome segregation protein; Provisional	96.49
PRK11637	428	AmiB activator; Provisional	96.47
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.47
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.45
PRK15430	296	putative chloramphenical resistance permease RarD;	96.45
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.44
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.42
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.39
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.39
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.36
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.31
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.31
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.25
PRK03918	880	chromosome segregation protein; Provisional	96.18
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.14
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.11
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.07
PRK01156	895	chromosome segregation protein; Provisional	96.01
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.93
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.93
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.86
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.85
PF13514	1111	AAA_27: AAA domain	95.75
PRK11637	428	AmiB activator; Provisional	95.72
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.65
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.56
PRK04778	569	septation ring formation regulator EzrA; Provision	95.55
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.46
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.45
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.37
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.13
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.01
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.84
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.79
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.72
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.61
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.6
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.51
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.41
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.38
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.35
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.32
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.21
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.1
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.0
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.92
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	93.89
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.8
PRK13499	345	rhamnose-proton symporter; Provisional	93.78
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	93.61
KOG2765	416	consensus Predicted membrane protein [Function unk	93.58
PRK04778	569	septation ring formation regulator EzrA; Provision	93.53
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.51
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.48
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.41
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.36
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.26
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.24
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.23
COG2962	293	RarD Predicted permeases [General function predict	92.84
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.63
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	92.63
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	92.58
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.55
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.54
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.46
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.46
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	92.44
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	92.42
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.42
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.36
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.35
KOG0964	1200	consensus Structural maintenance of chromosome pro	92.3
PRK04863	1486	mukB cell division protein MukB; Provisional	92.27
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.07
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.06
PRK09039	343	hypothetical protein; Validated	91.91
PRK04863	1486	mukB cell division protein MukB; Provisional	91.89
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	91.89
PRK10884	206	SH3 domain-containing protein; Provisional	91.63
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	91.41
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.31
KOG2922	335	consensus Uncharacterized conserved protein [Funct	91.28
KOG0979	1072	consensus Structural maintenance of chromosome pro	91.19
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.89
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.71
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.54
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	90.52
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.46
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	90.36
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.95
KOG4673	961	consensus Transcription factor TMF, TATA element m	89.92
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	89.83
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	89.54
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.42
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	89.4
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.32
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.3
PF13514	1111	AAA_27: AAA domain	89.13
PRK10929	1109	putative mechanosensitive channel protein; Provisi	89.11
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	88.95
KOG4572	1424	consensus Predicted DNA-binding transcription fact	88.87
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	88.85
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	88.21
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.02
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.88
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	87.85
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.78
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	87.74
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	87.53
PF15556	252	Zwint: ZW10 interactor	87.37
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	87.37
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	87.19
COG2510	140	Predicted membrane protein [Function unknown]	87.06
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.63
PRK12704	520	phosphodiesterase; Provisional	86.47
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	86.32
PF06730	219	FAM92: FAM92 protein; InterPro: IPR009602 This fam	86.15
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	86.06
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	85.92
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	85.84
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	85.58
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	85.47
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	85.35
PF05884	299	ZYG-11_interact: Interactor of ZYG-11; InterPro: I	85.31
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	85.3
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	85.27
PRK00106	535	hypothetical protein; Provisional	85.27
KOG1937	521	consensus Uncharacterized conserved protein [Funct	84.96
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	84.92
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	84.71
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.37
COG5185	622	HEC1 Protein involved in chromosome segregation, i	84.11
PRK12705	508	hypothetical protein; Provisional	83.9
KOG4421	637	consensus Uncharacterized conserved protein [Funct	83.68
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	83.56
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	83.56
PRK00409	782	recombination and DNA strand exchange inhibitor pr	83.5
PRK09343	121	prefoldin subunit beta; Provisional	83.44
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	83.35
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.64
cd09238	339	V_Alix_like_1 Protein-interacting V-domain of an u	82.42
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	82.37
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	82.33
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	82.31
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	81.83
KOG1962	216	consensus B-cell receptor-associated protein and r	81.73
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	81.29
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	81.16
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	81.06
PRK09039	343	hypothetical protein; Validated	81.02
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	80.84
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	80.83
KOG0018	1141	consensus Structural maintenance of chromosome pro	80.68
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	80.54
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	80.39
KOG0018	1141	consensus Structural maintenance of chromosome pro	80.33
PF09762	182	KOG2701: Coiled-coil domain-containing protein (DU	80.18
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	80.16
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.14

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=3.9e-102  Score=889.82  Aligned_cols=412  Identities=37%  Similarity=0.544  Sum_probs=354.6

Q ss_pred             hhhhhHHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCC--CCCCCCChhHHHHHHhhHHHHHHHHhcCC
Q 041515           41 MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTM--TFGTSLPHSMAEKFKICTDISSAIKNLGY  118 (762)
Q Consensus        41 MeE~D~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~--~l~~~lP~~msaRfr~~~~lA~a~k~~Gy  118 (762)
                      |||||+||||+|+|+||+||+||+||++||||++|++||+|||+|||+.  ++|++||++||||||+||+||+|||++||
T Consensus         1 Mee~d~ii~~~L~~~g~~~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~~~l~~~lP~~msaRfr~~~~lA~~~k~lGy   80 (594)
T PF05667_consen    1 MEEADEIIIHSLRQIGCDIPEDVQSLKQFTTELLVEAVVRCLRVIDPSLGSSLPRSLPPGMSARFRVGTSLAQACKELGY   80 (594)
T ss_pred             CcHHHHHHHHHHHHcCCcccCCcccHhhCCHHHHHHHHHHHHHHhCccccCCCcccCChHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999  69999999999999999999999999999


Q ss_pred             CCCCcccccccCChHHHHHHHHHHHHHhcCCCccccccC------CCccccccccccccccCCCCccchhhHHHHHHh--
Q 041515          119 IGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVAD------GKGVDVRGNINKSTLEGNGETDLDHQKIRDQLE--  190 (762)
Q Consensus       119 ~~digy~tfLY~~~~dlr~l~~fLiekLp~~p~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~--  190 (762)
                      |||||||||||||++|+|++|||||||||++..+....+      |.+..+.++|              ++.++++|+  
T Consensus        81 ~~digyq~fLYp~e~~~R~ll~fLiekLP~~~~~~~~~~~~~~~~~~~~~l~~~i--------------~~~i~~~l~~p  146 (594)
T PF05667_consen   81 RGDIGYQTFLYPNEKDLRRLLMFLIEKLPRENTSSADSDASKQPVGKSALLQRSI--------------AQAIREQLKAP  146 (594)
T ss_pred             CCCCcchhhccCChHHHHHHHHHHHHHCCccccccccchhhhhhHHHHHHHHHHH--------------HHHHHhhccCC
Confidence            999999999999999999999999999966632222221      5566677777              688999987  


Q ss_pred             ----hhhhcc--------CCCCCC---CCccccccc--CCchhhhcccC---CCcc-------ccccchhhhchhhh---
Q 041515          191 ----ECRLEN--------ELPQSS---NSEDVASDS--VSSSRVQDYNK---NDVT-------GVIRGKIKNHADNL---  240 (762)
Q Consensus       191 ----~c~~~~--------~~~~~~---~~~~~~~~~--~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~l---  240 (762)
                          +||...        .++|+.   +.|...+..  ..+.++++|+.   ||||       +++||.+++|+..+   
T Consensus       147 wvP~~cr~~~~~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~v~~Q~~~~~~~~~SlLe~naa~l~~~  226 (594)
T PF05667_consen  147 WVPPFCRPTMRRKQGSSSLKRFHSQPLSIPFSTSGREKPSPKELQEYYSRYLPPVTAQPPQAASRAPSLLECNAAELSAA  226 (594)
T ss_pred             CCChhhcccccccCCCcccccccCCCceeecccCCCcCCCChhHHHHHHhhCCCccccccccchhhhhHHhhcHHHHhhc
Confidence                799332        234543   233222211  12345555544   4443       23344443333221   


Q ss_pred             --------------------------------------------------------------------------------
Q 041515          241 --------------------------------------------------------------------------------  240 (762)
Q Consensus       241 --------------------------------------------------------------------------------  240 (762)
                                                                                                      
T Consensus       227 ~~~~~e~~~~g~~e~~~~K~~~l~~~l~e~lr~~~~~~~~~~~~~~s~~dl~~~l~~~~~~~~~k~s~f~~~ek~~~~~~  306 (594)
T PF05667_consen  227 QEWENEWNSQGLEEYRKRKQQRLQKRLAEQLRQAASASSDNHFRASSSDDLADVLHKFSGEAWDKGSRFTHSEKPQEAAP  306 (594)
T ss_pred             cchhhccccccchhhhHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHhccccccccccccccccchhhhhh
Confidence                                                                                            


Q ss_pred             ---------------------------hhHHHHH---------------------HHHHhhhhhcccCcHHHHHHHHHHH
Q 041515          241 ---------------------------QNRDESL---------------------MEAVTAKTSELCDPEEEYQLLKAAA  272 (762)
Q Consensus       241 ---------------------------~~~~~~l---------------------~~~~~~~~~~~~e~e~~~~~~~~~~  272 (762)
                                                 +.+++.+                     .+++++.+.+++++|+++.++++++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~  386 (594)
T PF05667_consen  307 AAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV  386 (594)
T ss_pred             ccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       0001111                     0222245567889999999999999


Q ss_pred             HHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          273 EMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSE  352 (762)
Q Consensus       273 e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e  352 (762)
                      ++|+|    +++||+||+++|+++++||.+|++|||+||.||++|||+|+++.+++..|+++++++||++|++++++.+|
T Consensus       387 ~lL~d----~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e  462 (594)
T PF05667_consen  387 ELLPD----AEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEE  462 (594)
T ss_pred             HHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999    99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515          353 IRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFRE  432 (762)
Q Consensus       353 ~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~  432 (762)
                      ++.|+++|+||+++|+++||++||++||+||+|||||||||++||+||+.|||+||||||+++|+|+|||+|+||+||+|
T Consensus       463 ~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrd  542 (594)
T PF05667_consen  463 IRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRD  542 (594)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccch--------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc
Q 041515          433 AKKDQS--------------FEQVSEKILATDRVRREIAEYEKKLAAVASRS  470 (762)
Q Consensus       433 akkd~~--------------~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~  470 (762)
                      ||||++              |++||++|++||+++|||||||+||+++++||
T Consensus       543 AKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~~kn  594 (594)
T PF05667_consen  543 AKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTESQKN  594 (594)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence            999994              99999999999999999999999999999986

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.7e-100  Score=810.51  Aligned_cols=428  Identities=29%  Similarity=0.447  Sum_probs=356.5

Q ss_pred             hhhhhHHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCCCCCC--CChhHHHHHHhhHHHHHHHHhcCC
Q 041515           41 MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTS--LPHSMAEKFKICTDISSAIKNLGY  118 (762)
Q Consensus        41 MeE~D~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~--lP~~msaRfr~~~~lA~a~k~~Gy  118 (762)
                      |||||+||||+|||+||+||+ ++++++||||+||+|||||||+|||+.++|++  ||++|++|||+||+||++||++||
T Consensus         1 MEEadriimh~lrq~g~sipp-~~~lseFTteqvveavvrcL~~Idps~q~~~s~llp~am~~Rfrla~siAq~ckdlgy   79 (521)
T KOG1937|consen    1 MEEADRIIMHALRQLGCSIPP-FEDLSEFTTEQVVEAVVRCLWKIDPSKQTISSYLLPKAMTTRFRLANSIAQYCKDLGY   79 (521)
T ss_pred             CcHHHHHHHHHHHHcCCCCCC-chhHhhcCHHHHHHHHHHHHHhcCccccccccccCchHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999987 99999999999999999999999999998887  888999999999999999999999


Q ss_pred             CCCCcccccccCChHHHHHHHHHHHHHhcCCCccccccCCCccccccccccccccCCCCccchhhHHHHHHh------hh
Q 041515          119 IGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQKIRDQLE------EC  192 (762)
Q Consensus       119 ~~digy~tfLY~~~~dlr~l~~fLiekLp~~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~------~c  192 (762)
                      |||+|||||||||++|+|++||||+|+||.++.+.    +....+.|.|              .+.++.|++      +|
T Consensus        80 rgD~gyqtfLypn~~dlR~ll~fLie~lp~dsQ~a----~~~~~l~rfl--------------~s~l~~ql~~pwvp~~~  141 (521)
T KOG1937|consen   80 RGDTGYQTFLYPNINDLRSLLIFLIEKLPADSQEA----VSLDQLHRFL--------------ESVLKHQLSQPWVPVYC  141 (521)
T ss_pred             CcccchhheecCCcccHHHHHHHHHhhCCcccccc----chHHHHHHHH--------------HHHHHHHhcCCCCchhh
Confidence            99999999999999999999999999996444433    4445555555              466777776      68


Q ss_pred             hhccC---CCCCC-------------CCccc-------cc---ccCCchhh-hcccC--------------CCcc---cc
Q 041515          193 RLENE---LPQSS-------------NSEDV-------AS---DSVSSSRV-QDYNK--------------NDVT---GV  228 (762)
Q Consensus       193 ~~~~~---~~~~~-------------~~~~~-------~~---~~~~~~~~-~~~~~--------------~~~~---~~  228 (762)
                      |.+..   ..|+.             +.|..       -+   ..+.+++| ++|.+              .|++   +.
T Consensus       142 r~~~~~kl~gFr~~ed~r~q~q~ld~q~pehfqq~~~~l~dpi~~sd~~~~ld~wg~~~~t~~df~f~~t~dPa~p~~p~  221 (521)
T KOG1937|consen  142 RIASRPKLEGFRDIEDNRNQEQKLDNQTPEHFQQCNAVLNDPIPNSDPRKWLDQWGNSSHTEKDFNFKLTDDPALPPKPI  221 (521)
T ss_pred             cccccccccccCcchhhHHHHHhhhhccHHHHHHHHHHhcCcccccchhhHHHHHhccCCccccccceecCCCCCCCccc
Confidence            85531   11111             11110       00   01122233 22211              2222   22


Q ss_pred             ccchhhhch---hhhhhH-------------HHHHHHHHhhhhhcccCcHHHHHHH----HHHHHHhcCCCCChhHHHHH
Q 041515          229 IRGKIKNHA---DNLQNR-------------DESLMEAVTAKTSELCDPEEEYQLL----KAAAEMAFDDSHPTEFYLEQ  288 (762)
Q Consensus       229 ~~~~~~~~~---~~l~~~-------------~~~l~~~~~~~~~~~~e~e~~~~~~----~~~~e~l~d~~~~~~~n~~k  288 (762)
                      ++.+...+.   +++.+.             .....++++.++++.++.+.+++..    .++++.++|    ++.|++|
T Consensus       222 ~~~passe~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~d----geayLaK  297 (521)
T KOG1937|consen  222 FAKPASSEEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDD----GEAYLAK  297 (521)
T ss_pred             cCCCccccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCC----hHhHHHH
Confidence            222221111   222211             2222477777777666666655544    455666666    9999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515          289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE  368 (762)
Q Consensus       289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~  368 (762)
                      |+.++..+.+++.+|++|||+||.||.++++.|++++.+.+.|..+ +.+|++++++++.+.+|++++++++++|..+++
T Consensus       298 L~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele  376 (521)
T KOG1937|consen  298 LMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELE  376 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998 899999999999999999999999999999999


Q ss_pred             cCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch----------
Q 041515          369 KQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS----------  438 (762)
Q Consensus       369 ~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~----------  438 (762)
                      ++|++++|..||+||+||+||||||++||.||++|||+||||+|+++++|+|+|+|+||++|++||||++          
T Consensus       377 ~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~  456 (521)
T KOG1937|consen  377 KLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTR  456 (521)
T ss_pred             cCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999994          


Q ss_pred             ----HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc--cchhhhhhhHHHHHHHhhhhhh
Q 041515          439 ----FEQVSEKILATDRVRREIAEYEKKLAAVASRS--LNVDKLQADVDVIMKENEFLEQ  492 (762)
Q Consensus       439 ----~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~--~nle~i~~D~~~i~~en~~~~s  492 (762)
                          |+||+++|++||+++||+||||.||+.|.+|+  +|||+|++||++|++||+.|.+
T Consensus       457 iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~  516 (521)
T KOG1937|consen  457 IHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFS  516 (521)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                99999999999999999999999999999999  9999999999999999997654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=100.00  E-value=8e-35  Score=311.72  Aligned_cols=245  Identities=33%  Similarity=0.527  Sum_probs=223.2

Q ss_pred             chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhH
Q 041515          516 DGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSS  595 (762)
Q Consensus       516 ~ga~~~~~~~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~  595 (762)
                      ++.++++++.++...++.+|+++|++.+++||++++.++|+||++++.+|+.++++...+.+.++..|..+.+.+.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~   85 (316)
T KOG1441|consen    6 EPASGQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRT   85 (316)
T ss_pred             cCcccccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHH
Confidence            34445666789999999999999999999999999988999999999999999999999999999888776667789999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHH
Q 041515          596 LFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFG  674 (762)
Q Consensus       596 l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G  674 (762)
                      ++|+|++++++++++|.|+.|+||||+|++|+ ++|+ ++++++++++|++++.++++++++++||++++++|.+||++|
T Consensus        86 llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa-~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G  164 (316)
T KOG1441|consen   86 LLPLGLVFCISHVLGNVSLSYVPVSFYQTIKA-LMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFG  164 (316)
T ss_pred             HHHHHHHHHHHHHhcchhhhccchhHHHHHHh-hcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHH
Confidence            99999999999999999999999999999996 5665 589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--hcCCCCHHHHHHHHHHHHHHHHH-HHHHhcCCccc---ccccCChhHHHHHHHHHH
Q 041515          675 AIIAVAWIIPSAINKILWSNLQ--QQGNWTALALMWKTTPVTVFFLL-ALMPWLDPPGV---LFYKWNLNNSSAIFISAL  748 (762)
Q Consensus       675 ~ilalls~l~~Al~~V~~kkll--k~~~lns~~Ll~y~~p~s~i~Ll-~~~~~~e~~~v---~~~~w~~~~~~~i~lsgv  748 (762)
                      ++.++++++..+++++++++++  ++.++|++++++|++|+++++++ |+....|+...   ...+|+.+++..++.+ +
T Consensus       165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v  243 (316)
T KOG1441|consen  165 FISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-V  243 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-H
Confidence            9999999999999999999999  46789999999999999999999 77777777665   4456888877777777 9


Q ss_pred             HHHHHHHHHHhhcC
Q 041515          749 LGFLLQWSGALALG  762 (762)
Q Consensus       749 lgf~ln~s~fl~Ig  762 (762)
                      ++|++|++.|++||
T Consensus       244 ~~f~~Nls~f~~ig  257 (316)
T KOG1441|consen  244 LAFLLNLSAFLVIG  257 (316)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999998

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-28  Score=256.97  Aligned_cols=235  Identities=19%  Similarity=0.281  Sum_probs=213.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHH
Q 041515          526 CGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSF  605 (762)
Q Consensus       526 ~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l  605 (762)
                      ..++++.++|+++|+.++++||++++.|+||.-+++..+|++++.+.+++++++|.+..++++++. .++++|+++++.+
T Consensus        11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~-~kk~~P~~~lf~~   89 (314)
T KOG1444|consen   11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT-AKKWFPVSLLFVG   89 (314)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH-HHHHccHHHHHHH
Confidence            577788999999999999999999999777777777779999999999999999999988886654 6789999999999


Q ss_pred             HHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHH
Q 041515          606 ATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPS  685 (762)
Q Consensus       606 ~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~  685 (762)
                      ++.++..|++|++||+|+++|+++..++++.+.+|+|.++++.+|+++..+.+|..+++.+|.+|+..||.|++.++++.
T Consensus        90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~  169 (314)
T KOG1444|consen   90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTT  169 (314)
T ss_pred             HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHH
Confidence            99999999999999999999986555678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cCC-hhHHHHHHHHHHHHHHHHHHHHhhc
Q 041515          686 AINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFY---KWN-LNNSSAIFISALLGFLLQWSGALAL  761 (762)
Q Consensus       686 Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~---~w~-~~~~~~i~lsgvlgf~ln~s~fl~I  761 (762)
                      +.+.++.++..+..+++.+.+++|++.++.++++++..+++.+.-+.+   +|. ..++..+++||++||+++|++|+|.
T Consensus       170 a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct  249 (314)
T KOG1444|consen  170 AAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCT  249 (314)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998889999999999999999999999988877552222   254 4578999999999999999999983

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.96  E-value=2.5e-28  Score=253.31  Aligned_cols=234  Identities=21%  Similarity=0.324  Sum_probs=199.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCC----CCCCCccchhHHHHHH
Q 041515          525 ICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPV----SPPAITTPFSSLFALG  600 (762)
Q Consensus       525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~----~~~~~~~~~~~l~plg  600 (762)
                      -+..++.+++||.+|+++.|++||.-.  +|+||++++.+|+++-+++..+.++....+.    .+.+++.+++++.|+|
T Consensus        14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta   91 (349)
T KOG1443|consen   14 RVLTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA   91 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh
Confidence            355566779999999999999999865  4999999999999999999888765443332    2345667788999999


Q ss_pred             HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHH
Q 041515          601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFS-KTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAV  679 (762)
Q Consensus       601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lg-ek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilal  679 (762)
                      ++.++++|++|+|+.|+++|+|+|.||+++.|+.+++ +.|| |+++|...+.+++|.+|++++++++.+|+..|+++++
T Consensus        92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs-~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~  170 (349)
T KOG1443|consen   92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFS-LIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVL  170 (349)
T ss_pred             hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHH
Confidence            9999999999999999999999999984344456666 5556 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHHHHHHhcCCcccc--cccCCh-------hHHHHHHHHH
Q 041515          680 AWIIPSAINKILWSNLQQQGN---WTALALMWKTTPVTVFFLLALMPWLDPPGVL--FYKWNL-------NNSSAIFISA  747 (762)
Q Consensus       680 ls~l~~Al~~V~~kkllk~~~---lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~--~~~w~~-------~~~~~i~lsg  747 (762)
                      ++++++|++|.+++.++++.+   -||+.++++.+|++.+.++|.++.+||+...  +..|+.       ..+..+.+.|
T Consensus       171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g  250 (349)
T KOG1443|consen  171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGG  250 (349)
T ss_pred             HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHH
Confidence            999999999999999997654   5899999999999999999999999997532  211211       3477889999


Q ss_pred             HHHHHHHHHHHhhc
Q 041515          748 LLGFLLQWSGALAL  761 (762)
Q Consensus       748 vlgf~ln~s~fl~I  761 (762)
                      +++|++.+|+|+++
T Consensus       251 ~laF~l~~sEflLl  264 (349)
T KOG1443|consen  251 LLAFLLEFSEFLLL  264 (349)
T ss_pred             HHHHHHHHHHHhee
Confidence            99999999999875

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=9e-27  Score=256.37  Aligned_cols=235  Identities=17%  Similarity=0.231  Sum_probs=200.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CccchhHHHHHHHHH
Q 041515          525 ICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPA-ITTPFSSLFALGVVM  603 (762)
Q Consensus       525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~-~~~~~~~l~plgl~~  603 (762)
                      .++.++.+++||.+|+..+++||++++.  ||||++++++|++++++++.+++..+..+.++.. ++.+++.++|+|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4788889999999999999999999997  8999999999999999888777766544433332 344678999999998


Q ss_pred             HHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHH
Q 041515          604 SFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWI  682 (762)
Q Consensus       604 ~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~  682 (762)
                      .+.....|+|++++++|+++++|+ +.|++ ++++++++|||++++++++++++++||++++.++.++++.|++++++|+
T Consensus       125 ~~~~~~~~~sl~~~svs~~~iika-~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~  203 (350)
T PTZ00343        125 LFVHFGAVISMGLGAVSFTHVVKA-AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSN  203 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH-hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHH
Confidence            877888899999999999999995 89975 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCCccc---c-c--c---cCCh-hHHHHHHHHH
Q 041515          683 IPSAINKILWSNLQQQG-----NWTALALMWKTTPVTVFFLLALMPWLDPPGV---L-F--Y---KWNL-NNSSAIFISA  747 (762)
Q Consensus       683 l~~Al~~V~~kkllk~~-----~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v---~-~--~---~w~~-~~~~~i~lsg  747 (762)
                      +++|+|+++.|+++++.     ++++.++.+|+.++++++++|+.++.|++..   + .  .   .|.. ..+..++.+|
T Consensus       204 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~  283 (350)
T PTZ00343        204 LGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSG  283 (350)
T ss_pred             HHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence            99999999999988654     4788888888999999999999887776421   1 0  0   1221 2455778899


Q ss_pred             HHHHHHHHHHHhhcC
Q 041515          748 LLGFLLQWSGALALG  762 (762)
Q Consensus       748 vlgf~ln~s~fl~Ig  762 (762)
                      +.+|+.|.++|++||
T Consensus       284 l~~~l~n~~~f~~l~  298 (350)
T PTZ00343        284 VWYYLYNEVAFYCLG  298 (350)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999986

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.93  E-value=7.7e-25  Score=235.79  Aligned_cols=199  Identities=19%  Similarity=0.201  Sum_probs=176.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHH
Q 041515          527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFA  606 (762)
Q Consensus       527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~  606 (762)
                      ...+.++.||++|++++++||++++.  |++|++++++|++++++++.+.+..+..+.++. .+..++.++|+|++++++
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~   78 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI-SSALLKLLLPVAIVHTIG   78 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999986  899999999999999988877755444443333 344788999999999999


Q ss_pred             HHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHH
Q 041515          607 TGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPS  685 (762)
Q Consensus       607 i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~  685 (762)
                      ++++|.|++|+++++++++++ +.|++ ++++++++|||++++.+++++++++|+++.+.++.++++.|+++++++++++
T Consensus        79 ~~~~~~~l~~~s~s~~~li~~-~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~  157 (302)
T TIGR00817        79 HVTSNVSLSKVAVSFTHTIKA-MEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF  157 (302)
T ss_pred             HHHHHHHHHhccHHHHHHHHh-cchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence            999999999999999999995 78875 8889999999999999999999999999988888888999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515          686 AINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPG  729 (762)
Q Consensus       686 Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~  729 (762)
                      |+|.++.++..+..+++++.+++|++++++++++|++.+.|++.
T Consensus       158 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~  201 (302)
T TIGR00817       158 VSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPP  201 (302)
T ss_pred             HHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchH
Confidence            99999999987655789999999999999999999888777643

specificities overlap.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9e-24  Score=216.22  Aligned_cols=236  Identities=17%  Similarity=0.248  Sum_probs=198.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCCCCc-cchhHHH
Q 041515          526 CGPVVAMTFNFVVSVGIILTNKLVMGQ--VGFNFPIFLTVIHYAVAWILLAIFKAF-----SIIPVSPPAIT-TPFSSLF  597 (762)
Q Consensus       526 ~~~~~ai~~~~v~Sv~ii~~NK~vl~~--~gF~~Pl~Lt~~q~l~a~ill~i~~~~-----~~~~~~~~~~~-~~~~~l~  597 (762)
                      ..+..+...|.++|++++|.||++++.  ....-|++++++|++++..++..+...     +.+..+..+-+ .-.+.++
T Consensus        27 ~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vl  106 (347)
T KOG1442|consen   27 KQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVL  106 (347)
T ss_pred             hchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhc
Confidence            344556667778999999999999997  456779999999999998887765432     22222222111 2356899


Q ss_pred             HHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecC---ccccHHH
Q 041515          598 ALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTD---LEFNIFG  674 (762)
Q Consensus       598 plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d---~~fs~~G  674 (762)
                      |+++++.+++.+.|.+|+|++|+||++-|+.++||++++.|+++|.+.+.....+++++++|..+..-.|   ..+++.|
T Consensus       107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~G  186 (347)
T KOG1442|consen  107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIG  186 (347)
T ss_pred             chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999988777   4689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc-cccccc--CChhHHHHHHHHHHHHH
Q 041515          675 AIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPP-GVLFYK--WNLNNSSAIFISALLGF  751 (762)
Q Consensus       675 ~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~-~v~~~~--w~~~~~~~i~lsgvlgf  751 (762)
                      +++++.|+++.|+..+++++.+.+.+---|.+.+|++..++++++|...+.+.. .++.|+  |...+|.++.+||++||
T Consensus       187 vifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF  266 (347)
T KOG1442|consen  187 VIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGF  266 (347)
T ss_pred             hHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999988766555678899999999999999988776553 466654  67789999999999999


Q ss_pred             HHHHHHHhhc
Q 041515          752 LLQWSGALAL  761 (762)
Q Consensus       752 ~ln~s~fl~I  761 (762)
                      .+|+.+++-|
T Consensus       267 ~mgyvTg~QI  276 (347)
T KOG1442|consen  267 AMGYVTGWQI  276 (347)
T ss_pred             HhhheeeEEE
Confidence            9999998754

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.87  E-value=5.4e-22  Score=197.84  Aligned_cols=229  Identities=19%  Similarity=0.245  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHH
Q 041515          528 PVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFAT  607 (762)
Q Consensus       528 ~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i  607 (762)
                      .+.+++.|+.+|+.+++.|||+++..||+.-..+.++|-+++.+.+.+++..|....+    .+..+.|+|.+++..+++
T Consensus         7 ~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR----~t~aK~WfpiSfLLv~MI   82 (309)
T COG5070           7 ELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR----LTKAKKWFPISFLLVVMI   82 (309)
T ss_pred             cchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee----hhhhhhhcCHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999888877652    345788999999999999


Q ss_pred             HHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc--------ccHHHHHHHH
Q 041515          608 GLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE--------FNIFGAIIAV  679 (762)
Q Consensus       608 ~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~--------fs~~G~ilal  679 (762)
                      ..+..||+|+++|.|+++|+.++.+++.++.+|||.+.+-....+.++|++..++++++|.+        +| -||+|..
T Consensus        83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~  161 (309)
T COG5070          83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMF  161 (309)
T ss_pred             HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEe
Confidence            99999999999999999999877788999999999999999999999999999999999973        34 6999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccc--cccCChhHHHHHHHHHHHHHHHHHHH
Q 041515          680 AWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVL--FYKWNLNNSSAIFISALLGFLLQWSG  757 (762)
Q Consensus       680 ls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~--~~~w~~~~~~~i~lsgvlgf~ln~s~  757 (762)
                      .+++.++++....++..+-.+.-.++.|||++.++.+.++.++.++|.|.--  ..++....+.++++||+.+++++|++
T Consensus       162 ~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s  241 (309)
T COG5070         162 TNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS  241 (309)
T ss_pred             hhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc
Confidence            9999999999988887765677889999999999999999999999987532  33344445789999999999999999


Q ss_pred             Hhhc
Q 041515          758 ALAL  761 (762)
Q Consensus       758 fl~I  761 (762)
                      -+|+
T Consensus       242 aWcv  245 (309)
T COG5070         242 AWCV  245 (309)
T ss_pred             ceeE
Confidence            8875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.83  E-value=6.6e-19  Score=190.28  Aligned_cols=225  Identities=19%  Similarity=0.237  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 041515          533 TFNFVVSVGIILTNKLVMGQ-VGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLAN  611 (762)
Q Consensus       533 ~~~~v~Sv~ii~~NK~vl~~-~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N  611 (762)
                      .+|..+.... +++..++.. ++.+||++++++|++++++...+.......   +.+++.+++++++.++++.++.+++|
T Consensus         7 ~i~~~~~~~g-~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
T PF08449_consen    7 GIFGGCCSYG-ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF---PKSRKIPLKKYAILSFLFFLASVLSN   82 (303)
T ss_pred             HHHHHHHHHH-HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---cCCCcChHHHHHHHHHHHHHHHHHHH
Confidence            3444444433 444555554 444589999999999999988876543331   12356689999999999999999999


Q ss_pred             hhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc----c------cHHHHHHHHHH
Q 041515          612 TSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE----F------NIFGAIIAVAW  681 (762)
Q Consensus       612 ~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~----f------s~~G~ilalls  681 (762)
                      .||+|+|+|+++++|++..+++++++++++|+|++++++++++++++|+++++.+|..    .      ...|+++.+++
T Consensus        83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~s  162 (303)
T PF08449_consen   83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLS  162 (303)
T ss_pred             HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHH
Confidence            9999999999999998544456888999999999999999999999999999987742    1      13399999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CC-cccccc-cCChhHHHHHHHHHHHHHHHHHHH
Q 041515          682 IIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWL--DP-PGVLFY-KWNLNNSSAIFISALLGFLLQWSG  757 (762)
Q Consensus       682 ~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~--e~-~~v~~~-~w~~~~~~~i~lsgvlgf~ln~s~  757 (762)
                      .+++|++.++++++.++++.+++++++|++.++++++++.++.+  +. .....+ .+++..+..+++.++.+++.+...
T Consensus       163 l~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i  242 (303)
T PF08449_consen  163 LLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFI  242 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877773  22 122222 134445667777777777666666


Q ss_pred             Hhhc
Q 041515          758 ALAL  761 (762)
Q Consensus       758 fl~I  761 (762)
                      |.++
T Consensus       243 ~~~~  246 (303)
T PF08449_consen  243 FYLI  246 (303)
T ss_pred             HHHH
Confidence            6553

; GO: 0055085 transmembrane transport

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2e-14  Score=147.68  Aligned_cols=210  Identities=16%  Similarity=0.202  Sum_probs=166.8

Q ss_pred             HHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 041515          543 ILTNKLVMGQVGFN-FPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGF  621 (762)
Q Consensus       543 i~~NK~vl~~~gF~-~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~  621 (762)
                      -.+..++++..||+ |-|.+|++|+++-..+.++-..  .+.  +-++..||+.+..++.+..++++++|-|+.|++.|.
T Consensus        59 Gy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~--~~~--~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPt  134 (367)
T KOG1582|consen   59 GYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ--LIQ--TKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPT  134 (367)
T ss_pred             HHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE--eec--ccceecchhHhhhhHhhhhhccccCcCccccccCcH
Confidence            35678999999996 9999999999987665554421  121  112456888899999999999999999999999999


Q ss_pred             HHHHHhhh-HHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc----cccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515          622 YQMSKIAV-TPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL----EFNIFGAIIAVAWIIPSAINKILWSNLQ  696 (762)
Q Consensus       622 ~qmlKsas-~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~----~fs~~G~ilalls~l~~Al~~V~~kkll  696 (762)
                      ..++|++. +|+. +...++-|+|+++..+++..++++|.++++..|.    +||..|+++.-++.++.|+-+..+++.+
T Consensus       135 QviFKccKliPVm-iggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m  213 (367)
T KOG1582|consen  135 QVIFKCCKLIPVM-IGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAM  213 (367)
T ss_pred             HHHHHhhhhhhhh-heeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999763 4444 4566888999999999999999999999999885    5899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-cccc----cccC-ChhHHHHHHHHHHHHHHHHHHH
Q 041515          697 QQGNWTALALMWKTTPVTVFFLLALMPWLDP-PGVL----FYKW-NLNNSSAIFISALLGFLLQWSG  757 (762)
Q Consensus       697 k~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~-~~v~----~~~w-~~~~~~~i~lsgvlgf~ln~s~  757 (762)
                      +.++-++.++++|.+.++++++++.+..+++ ...+    ..+| +....++..++|.+|....++-
T Consensus       214 ~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLal  280 (367)
T KOG1582|consen  214 KMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLAL  280 (367)
T ss_pred             hhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHH
Confidence            9888899999999999999999887776654 2222    2345 2233455556666665555443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.55  E-value=8.2e-13  Score=138.56  Aligned_cols=188  Identities=12%  Similarity=0.127  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-----------cCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHH
Q 041515          531 AMTFNFVVSVGIILTNKLVMGQ-----------VGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFAL  599 (762)
Q Consensus       531 ai~~~~v~Sv~ii~~NK~vl~~-----------~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~pl  599 (762)
                      +-++|++.++-.+++.--++++           -.|..|.++.++|-+++.++.+++......+   ++...||.++..+
T Consensus        13 ~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~---~~~~apl~~y~~i   89 (327)
T KOG1581|consen   13 ILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE---LSGVAPLYKYSLI   89 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc---CCCCCchhHHhHH
Confidence            3345555665555554444443           3688899999999999999987664332222   2234578888889


Q ss_pred             HHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc---------cc
Q 041515          600 GVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL---------EF  670 (762)
Q Consensus       600 gl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~---------~f  670 (762)
                      ++...++..++..||+|+|.|.++++||+-+.-+++...+++|+|+++..+++.+++.+||.+++.++.         ..
T Consensus        90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n  169 (327)
T KOG1581|consen   90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN  169 (327)
T ss_pred             HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence            999999999999999999999999999885444556788999999999999999999999999988643         25


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 041515          671 NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLAL  721 (762)
Q Consensus       671 s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~  721 (762)
                      +++|+.++.++.+++|+.+..++++.++++++++++|+|+|+++++..+..
T Consensus       170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~  220 (327)
T KOG1581|consen  170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY  220 (327)
T ss_pred             chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh
Confidence            699999999999999999999999999999999999999999999988765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.54  E-value=1.6e-12  Score=141.71  Aligned_cols=192  Identities=18%  Similarity=0.252  Sum_probs=151.6

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 041515          545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK--AFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFY  622 (762)
Q Consensus       545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~--~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~  622 (762)
                      .+.++-+. |+..|.+=+++-++.-+++-....  +.+.-+.... .+.+|.+++.+|++-.....+.+.|++|++++..
T Consensus        31 ~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~-~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~  108 (334)
T PF06027_consen   31 FSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKV-LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSV  108 (334)
T ss_pred             HHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhh-cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHH
Confidence            44555454 788899888777766554432221  1111111111 2335667888899988999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc---------ccHHHHHHHHHHHHHHHHHHHHHH
Q 041515          623 QMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE---------FNIFGAIIAVAWIIPSAINKILWS  693 (762)
Q Consensus       623 qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~---------fs~~G~ilalls~l~~Al~~V~~k  693 (762)
                      |++.+.++|++++++++++++|+++.+++|+++.++|++++.+.|..         -...|.++++++++++|+++++.+
T Consensus       109 ~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E  188 (334)
T PF06027_consen  109 QLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEE  188 (334)
T ss_pred             HhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence            99998899999999999999999999999999999999998887642         248999999999999999999999


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHH
Q 041515          694 NLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNS  740 (762)
Q Consensus       694 kllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~  740 (762)
                      ++.++  .+..+.+.....+++++..+...++|..++..+.|+...+
T Consensus       189 ~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~  233 (334)
T PF06027_consen  189 KLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVI  233 (334)
T ss_pred             Hhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhH
Confidence            98864  5678888888889988888888888887777777876543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2e-13  Score=137.89  Aligned_cols=175  Identities=14%  Similarity=0.170  Sum_probs=144.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH
Q 041515          554 GFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI  633 (762)
Q Consensus       554 gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~  633 (762)
                      .|.|.+.+.++|+.+..++.-++..++  +.... .+.+-+.+..+++-+.+.++.+|.+++|+|.|+..+-||+ -|+-
T Consensus        49 ~FTfalaLVf~qC~~N~vfAkvl~~ir--~~~~~-D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKSc-KPIP  124 (337)
T KOG1580|consen   49 KFTFALALVFFQCTANTVFAKVLFLIR--KKTEI-DNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSC-KPIP  124 (337)
T ss_pred             eehHHHHHHHHHHHHHHHHHHhheeec--ccccc-cCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccC-CCcc
Confidence            489999999999999999987664332  22122 1234556788999999999999999999999999999974 7764


Q ss_pred             -HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 041515          634 -VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE-------FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALA  705 (762)
Q Consensus       634 -vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~-------fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~  705 (762)
                       +++..++.+++++|+++++++++++||+++.+.+-.       -.-+|-++.++|..+.|+.+..++++...+.-++.+
T Consensus       125 VMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~  204 (337)
T KOG1580|consen  125 VMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS  204 (337)
T ss_pred             eeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh
Confidence             677788889999999999999999999999987532       235899999999999999999999988888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC-ccccc
Q 041515          706 LMWKTTPVTVFFLLALMPWLDP-PGVLF  732 (762)
Q Consensus       706 Ll~y~~p~s~i~Ll~~~~~~e~-~~v~~  732 (762)
                      ||+|++++|.+.|-...++++. |.++.
T Consensus       205 MM~~~NlwStL~Lg~g~lfTGElweF~y  232 (337)
T KOG1580|consen  205 MMFYTNLWSTLYLGAGLLFTGELWEFFY  232 (337)
T ss_pred             hHHHHHHHHHHHhhhhheehhhHHHHHH
Confidence            9999999999999877766543 55443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.44  E-value=2.3e-11  Score=127.55  Aligned_cols=197  Identities=17%  Similarity=0.144  Sum_probs=143.5

Q ss_pred             HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchhHHH
Q 041515          544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSVGFY  622 (762)
Q Consensus       544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsVs~~  622 (762)
                      +..|+.++. ..| |..+++.+++++.+++.++...+  +    +++ .+..++.+|.+ ++++..+.+.|++|++++..
T Consensus         6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~--~----~~~-~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~   76 (260)
T TIGR00950         6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRRR--P----PLK-RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA   76 (260)
T ss_pred             HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHhc--c----CHh-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            456888875 345 88899999998888877654433  1    122 34445556554 67888899999999999999


Q ss_pred             HHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041515          623 QMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD-LEFNIFGAIIAVAWIIPSAINKILWSNLQQQGN  700 (762)
Q Consensus       623 qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d-~~fs~~G~ilalls~l~~Al~~V~~kkllk~~~  700 (762)
                      +++. .+.|++ ++++.+++|||+++++++++++.++|+++....+ .+.+..|+++++++.++++++.++.++..++.+
T Consensus        77 ~ii~-~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~  155 (260)
T TIGR00950        77 ALLL-YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG  155 (260)
T ss_pred             HHHH-hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence            9998 489986 7888999999999999999999999998876543 456688999999999999999999998876555


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHHH
Q 041515          701 WTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQ  754 (762)
Q Consensus       701 lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~ln  754 (762)
                      .++..+..+...++.+++++.....+...    .++...|..+++.|+++.++.
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       156 PELLQFTGWVLLLGALLLLPFAWFLGPNP----QALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHHHHHH
Confidence            55555555667778777777766554332    123334444454554443333

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.41  E-value=4.2e-11  Score=132.55  Aligned_cols=196  Identities=17%  Similarity=0.145  Sum_probs=138.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CC-CCCCCCCCccchhHHHHHHHHHH
Q 041515          527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SI-IPVSPPAITTPFSSLFALGVVMS  604 (762)
Q Consensus       527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~-~~~~~~~~~~~~~~l~plgl~~~  604 (762)
                      .+..+++.-=++..++..+.|+.+.. |.+ |..++++|++++++++.++... +. .+.++. .+..+..++.+|++.+
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~-~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPL-SVSILSKIGLLGFLGS   89 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-hHHHHHHHHHHHHHHH
Confidence            34444445556777888888999974 787 8889999999998877655322 11 111111 1224456666776655


Q ss_pred             HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHH------hcccccHHHHHHHHHHHHhhheeeec-Cc--------
Q 041515          605 FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFIL------FSKTISYKKVLALAIVSVGVAVATVT-DL--------  668 (762)
Q Consensus       605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~------lgek~s~~~~lsLlli~~GV~la~~~-d~--------  668 (762)
                      +...+.+.+++|+|.+...++- ++.|++ ++++++|      ++||+++.+++++++.++|+++.... +.        
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~-~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~  168 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAIS-NITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP  168 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHH-HhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence            5666889999999999999997 589986 7778888      69999999999999999999886531 11        


Q ss_pred             ---------------ccc-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 041515          669 ---------------EFN-IFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDP  727 (762)
Q Consensus       669 ---------------~fs-~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~  727 (762)
                                     ..+ +.|.+++++++++||+|.++.++..+++. +...+.+++..++.+.+++.+.+.++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence                           112 45999999999999999999998876532 22344555555555555555555554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.35  E-value=3.9e-10  Score=121.74  Aligned_cols=213  Identities=12%  Similarity=0.193  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHH-HHH
Q 041515          528 PVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVM-SFA  606 (762)
Q Consensus       528 ~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~-~l~  606 (762)
                      .+.+.++|....+    ..|..+.+  ++ |..++++|++++++.+.+...   .+      +.+++.++..|++. .+.
T Consensus         9 ~l~~~~~Wg~~~~----~~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~---~~------~~~~~~~~~~g~~~~~~~   72 (299)
T PRK11453          9 ALLVVVVWGLNFV----VIKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVA---RP------KVPLNLLLGYGLTISFGQ   72 (299)
T ss_pred             HHHHHHHHhhhHH----HHHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhc---CC------CCchHHHHHHHHHHHHHH
Confidence            3444555544332    33887764  77 999999999997766544421   11      11234455556643 344


Q ss_pred             HHHHHhhhhc-chhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC---ccccHHHHHHHHHH
Q 041515          607 TGLANTSLKH-NSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD---LEFNIFGAIIAVAW  681 (762)
Q Consensus       607 i~l~N~SL~y-vsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d---~~fs~~G~ilalls  681 (762)
                      ..+...+++| +|.+...++- ++.|++ ++++++++||+++.++++++++.++|+++....+   ..+++.|.++++++
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~-~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~a  151 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVL-QAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAA  151 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHH-HhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHH
Confidence            4555678887 6888988886 478865 7889999999999999999999999999887542   23456899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccCChhHHHHHHHHHHHHHHHHHHH
Q 041515          682 IIPSAINKILWSNLQQQGN-WTALALMWKTTPVTVFFLLALMPWLDPPGVLF---YKWNLNNSSAIFISALLGFLLQWSG  757 (762)
Q Consensus       682 ~l~~Al~~V~~kkllk~~~-lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~---~~w~~~~~~~i~lsgvlgf~ln~s~  757 (762)
                      ++++|++.++.++..++.. .....+.++...++.+++++.+.+.+++....   .+++...|..+++-|+++..+.+.-
T Consensus       152 al~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l  231 (299)
T PRK11453        152 AFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGI  231 (299)
T ss_pred             HHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998754332 33344455655555555554444455432111   1245555666666665555554443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.34  E-value=5.9e-11  Score=124.81  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-----
Q 041515          595 SLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE-----  669 (762)
Q Consensus       595 ~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~-----  669 (762)
                      ++..-+++|++...+..+++.|++.+.||+++++.++++++++++++|++.+..+|+|+++.++|++++..++..     
T Consensus        19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~   98 (244)
T PF04142_consen   19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS   98 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence            455556779999999999999999999999999888889999999999999999999999999999998774421     


Q ss_pred             ------------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccc----c
Q 041515          670 ------------FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF----Y  733 (762)
Q Consensus       670 ------------fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~----~  733 (762)
                                  -.+.|+++++++++++|+.+++.++++|+.+.+-+.-....+.+|+++.++..++.|+..+..    .
T Consensus        99 ~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~  178 (244)
T PF04142_consen   99 SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFH  178 (244)
T ss_pred             cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchh
Confidence                        136899999999999999999999999987777666666777888888877766665533222    2


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHH
Q 041515          734 KWNLNNSSAIFISALLGFLLQWS  756 (762)
Q Consensus       734 ~w~~~~~~~i~lsgvlgf~ln~s  756 (762)
                      .|+...|..++..++.|.++.+.
T Consensus       179 G~~~~~~~~i~~~a~gGllva~v  201 (244)
T PF04142_consen  179 GYSWWVWIVIFLQAIGGLLVAFV  201 (244)
T ss_pred             hcchHHHHHHHHHHHhhHHHHHH
Confidence            47777788888888888776643

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.30  E-value=1e-09  Score=118.04  Aligned_cols=199  Identities=17%  Similarity=0.187  Sum_probs=137.7

Q ss_pred             HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHH-HHHHHHHHhhh-hcchhHH
Q 041515          544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVM-SFATGLANTSL-KHNSVGF  621 (762)
Q Consensus       544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~-~l~i~l~N~SL-~yvsVs~  621 (762)
                      ..-|+.+.+  .+ |..++++|++++.+++.++...+..+.  . ++..+...+.+|++. ++...+.++++ .+++++.
T Consensus        25 ~~~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~   98 (292)
T PRK11272         25 LVIRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRGHPL--P-TLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGI   98 (292)
T ss_pred             HHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhCCCC--C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence            345887764  66 999999999999888766543322221  1 233466667777764 46667778888 9999999


Q ss_pred             HHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec-CccccHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 041515          622 YQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT-DLEFNIFGAIIAVAWIIPSAINKILWSNLQQQG  699 (762)
Q Consensus       622 ~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~-d~~fs~~G~ilalls~l~~Al~~V~~kkllk~~  699 (762)
                      .+++- ++.|++ +++++ ++|||+++++++++++.++|+++...+ +.+.+..|.++++++.+++|++.++.++..++ 
T Consensus        99 a~~l~-~~~Pl~~~lla~-~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-  175 (292)
T PRK11272         99 AAVVV-ATVPLFTLCFSR-LFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPLP-  175 (292)
T ss_pred             HHHHH-HHHHHHHHHHHH-HhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            99887 589986 66776 479999999999999999999987643 34566789999999999999999998876432 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHHHH
Q 041515          700 NWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQW  755 (762)
Q Consensus       700 ~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~ln~  755 (762)
                        ++.....|...++.+.++++....+.+...  ..+...|..+++.|+++..+.+
T Consensus       176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        176 --VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHH
Confidence              234455566667777766665554432111  1123345555555555544444

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.26  E-value=1.7e-09  Score=116.64  Aligned_cols=164  Identities=16%  Similarity=0.070  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHH
Q 041515          527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFA  606 (762)
Q Consensus       527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~  606 (762)
                      ..+.++++|...    ....|..+..  ++ |..++++|++++.+++.++..   .+  .. ++..++.++..++.+++.
T Consensus         8 ~~l~a~~~Wg~~----~~~~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~---~~--~~-~~~~~~~~~~~~l~~~~~   74 (295)
T PRK11689          8 IGLIAILLWSTM----VGLIRGVSES--LG-PVGGAAMIYSVSGLLLLLTVG---FP--RL-RQFPKRYLLAGGLLFVSY   74 (295)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHcc--CC-hHHHHHHHHHHHHHHHHHHcc---cc--cc-ccccHHHHHHHhHHHHHH
Confidence            344556666533    3456988875  77 999999999999888776531   11  11 222333344444445666


Q ss_pred             HHHHHhhhhc----chhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-----------c
Q 041515          607 TGLANTSLKH----NSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE-----------F  670 (762)
Q Consensus       607 i~l~N~SL~y----vsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~-----------f  670 (762)
                      ..+.+.++.|    .+.+...++- ++.|++ ++++++++|||+++.+++++++.++|+++....+..           .
T Consensus        75 ~~~~~~a~~~~~~~~~a~~a~~l~-~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  153 (295)
T PRK11689         75 EICLALSLGYANTRRQAIEVGMVN-YLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS  153 (295)
T ss_pred             HHHHHHHHHHhhccccchHHHHHH-HHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc
Confidence            6666677755    4555666665 578976 788899999999999999999999999988765421           2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 041515          671 NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALAL  706 (762)
Q Consensus       671 s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~L  706 (762)
                      +..|.++++++++++|+|.++.++..+  +.++..+
T Consensus       154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~  187 (295)
T PRK11689        154 NPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITL  187 (295)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhH
Confidence            456999999999999999999998754  3455544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.17  E-value=3.4e-09  Score=114.33  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CCCCC-CC-CCCccchhHHHHHHHHHHHHHHH
Q 041515          533 TFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SIIPV-SP-PAITTPFSSLFALGVVMSFATGL  609 (762)
Q Consensus       533 ~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~~-~~-~~~~~~~~~l~plgl~~~l~i~l  609 (762)
                      +..++.+..-++. |++ .  +++ |..++++|++++.+++.+.... +..+. .+ ...+..+..++..++.++++..+
T Consensus        15 ~a~~~wg~~~~~~-k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (296)
T PRK15430         15 AAYFIWGIAPAYF-KLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLL   89 (296)
T ss_pred             HHHHHHHHHHHHH-HHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333 875 3  367 9999999999998766544322 11110 00 00111121222333446778899


Q ss_pred             HHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHH
Q 041515          610 ANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAIN  688 (762)
Q Consensus       610 ~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~  688 (762)
                      .++|++|+|++..+++- ++.|++ ++++++++|||+++++++++++.++|+++....+.+..    .+++++++++|+|
T Consensus        90 ~~~a~~~~~~~~a~~l~-~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~  164 (296)
T PRK15430         90 FIWAVNNHHMLEASLGY-FINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFY  164 (296)
T ss_pred             HHHHHhcCchHHHHHHH-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHH
Confidence            99999999999999997 689986 78889999999999999999999999998754322222    4678889999999


Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 041515          689 KILWSNLQQQGNWTALALMWKTTPVTVFFL  718 (762)
Q Consensus       689 ~V~~kkllk~~~lns~~Ll~y~~p~s~i~L  718 (762)
                      .++.++...+...+......|..+++++.+
T Consensus       165 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~  194 (296)
T PRK15430        165 GLVRKKIAVEAQTGMLIETMWLLPVAAIYL  194 (296)
T ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            999887643222233444445555555443

>TIGR00688 rarD rarD protein

Probab=99.14  E-value=7.1e-09  Score=109.22  Aligned_cols=143  Identities=14%  Similarity=0.116  Sum_probs=105.0

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCC-----CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcch
Q 041515          545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSII-----PVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNS  618 (762)
Q Consensus       545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~-----~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvs  618 (762)
                      +.|++ .+  ++ |..++++|++++++++.+.. ..+..     .....+++..+..+...|++++++..+...|++|++
T Consensus        20 ~~k~~-~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~   95 (256)
T TIGR00688        20 YSKLL-KP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGS   95 (256)
T ss_pred             HHHHh-cc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            35773 32  66 99999999999987765432 22211     000111121123355667778888899999999999


Q ss_pred             hHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515          619 VGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQ  696 (762)
Q Consensus       619 Vs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~~V~~kkll  696 (762)
                      ++..+++- ++.|++ ++++++++|||+++++++++++.++|+++....+.+.+    .+++++++++|+|.++.++..
T Consensus        96 ~~~a~~l~-~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~  169 (256)
T TIGR00688        96 SLEVSLGY-LINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALK  169 (256)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcC
Confidence            99999997 589986 78899999999999999999999999987654322222    357889999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.14  E-value=8.1e-09  Score=111.48  Aligned_cols=225  Identities=11%  Similarity=0.134  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHHcC--C---CCCCCCCC-----ccchhHHHHHH
Q 041515          532 MTFNFVVSVGIILTNKLVMGQVGFNF-PIFLTVIHYAVAWILLAIFKAFS--I---IPVSPPAI-----TTPFSSLFALG  600 (762)
Q Consensus       532 i~~~~v~Sv~ii~~NK~vl~~~gF~~-Pl~Lt~~q~l~a~ill~i~~~~~--~---~~~~~~~~-----~~~~~~l~plg  600 (762)
                      ++.-.+-+.++.++-+|.-...+++| |.+..++-=++-.+++.......  .   .+...+.+     +....++..-+
T Consensus        20 l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa   99 (345)
T KOG2234|consen   20 LIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA   99 (345)
T ss_pred             HHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence            33444556677777777766655554 77777666665555544332111  1   11111111     11123444446


Q ss_pred             HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecC-----------cc
Q 041515          601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTD-----------LE  669 (762)
Q Consensus       601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d-----------~~  669 (762)
                      ++|++..-+..+++.|++.++||+.-...+..++++..+++++|.++..|.++++.++|+++.-+..           .+
T Consensus       100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~  179 (345)
T KOG2234|consen  100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQ  179 (345)
T ss_pred             HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCccc
Confidence            6788877789999999999999999987677789999999999999999999999999999987311           12


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccc----ccCChhHHHHHHH
Q 041515          670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF----YKWNLNNSSAIFI  745 (762)
Q Consensus       670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~----~~w~~~~~~~i~l  745 (762)
                      ..+.|+..++++++++|+-++|.++++|..+.+.|---.-++.+|+++.+......|+..+..    +.|+...|+.++.
T Consensus       180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~  259 (345)
T KOG2234|consen  180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL  259 (345)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH
Confidence            358999999999999999999999999988877777666777888888887777777754422    3588888888888


Q ss_pred             HHHHHHHHHHH
Q 041515          746 SALLGFLLQWS  756 (762)
Q Consensus       746 sgvlgf~ln~s  756 (762)
                      .|+-|.++++.
T Consensus       260 ~a~gGLlvs~v  270 (345)
T KOG2234|consen  260 NAVGGLLVSLV  270 (345)
T ss_pred             HhccchhHHHH
Confidence            88877777654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.13  E-value=1.8e-08  Score=108.69  Aligned_cols=165  Identities=13%  Similarity=0.051  Sum_probs=117.7

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 041515          545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQM  624 (762)
Q Consensus       545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qm  624 (762)
                      +.|+.+..  ++ |..+.++|++++++++.++.+.+..+   .+ +..++.++..|+++++...+..+|++|+|++..++
T Consensus        30 ~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~~~---~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~  102 (293)
T PRK10532         30 LAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWRLR---FA-KEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA  102 (293)
T ss_pred             HHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHhcc---CC-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            57999885  77 99999999999988877654221111   11 23455677788888888888899999999999998


Q ss_pred             HHhhhHHHHH-HHHHHHhcccccHHHHHHHHHHHHhhheeeec--C-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041515          625 SKIAVTPTIV-LAEFILFSKTISYKKVLALAIVSVGVAVATVT--D-LEFNIFGAIIAVAWIIPSAINKILWSNLQQQGN  700 (762)
Q Consensus       625 lKsas~P~~v-ll~~l~lgek~s~~~~lsLlli~~GV~la~~~--d-~~fs~~G~ilalls~l~~Al~~V~~kkllk~~~  700 (762)
                      +- ++.|+++ +++    +++++.  +..+.+.++|+++....  + ...+..|.++++++.+++|+|.++.++..++  
T Consensus       103 l~-~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~--  173 (293)
T PRK10532        103 LE-FTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAE--  173 (293)
T ss_pred             HH-HHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            87 5899874 333    355554  44566678898876532  2 2356789999999999999999999988643  


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515          701 WTALALMWKTTPVTVFFLLALMPWLD  726 (762)
Q Consensus       701 lns~~Ll~y~~p~s~i~Ll~~~~~~e  726 (762)
                      .++..+. +...++.+.++++....+
T Consensus       174 ~~~~~~~-~~~~~~~~~l~~~~~~~~  198 (293)
T PRK10532        174 HGPATVA-IGSLIAALIFVPIGALQA  198 (293)
T ss_pred             CCchHHH-HHHHHHHHHHHHHHHHcc
Confidence            4555543 445666666666655543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.04  E-value=1.8e-07  Score=98.52  Aligned_cols=145  Identities=17%  Similarity=0.207  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HH
Q 041515          558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTP-FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VL  635 (762)
Q Consensus       558 Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~-~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vl  635 (762)
                      +....+.+++++.+........+.....+  ...+ +..++..++.+.....+.+.++.|++++..+++.+ +.|++ ++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~p~~~~~  112 (292)
T COG0697          36 FLFAAALRFLIAALLLLPLLLLEPRGLRP--ALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIG-LLPLFTAL  112 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHH
Confidence            45555558888877744343322211111  1122 23344444456777888899999999999999984 89976 66


Q ss_pred             HHH-HHhcccccHHHHHHHHHHHHhhheeeecCccc---cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 041515          636 AEF-ILFSKTISYKKVLALAIVSVGVAVATVTDLEF---NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMW  708 (762)
Q Consensus       636 l~~-l~lgek~s~~~~lsLlli~~GV~la~~~d~~f---s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~  708 (762)
                      +++ +++||++++.+++++++.++|++++...+...   +..|..+++++.+++|++.++.++..   ..++..+.+
T Consensus       113 ~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~  186 (292)
T COG0697         113 LAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS---RLGPVTLAL  186 (292)
T ss_pred             HHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHH
Confidence            675 66699999999999999999999999877654   36899999999999999999998775   455555555

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.97  E-value=4.1e-08  Score=102.29  Aligned_cols=188  Identities=19%  Similarity=0.229  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHHHHHHHHHHHc-------CCCC-CCCCCCcc--chh--HH
Q 041515          534 FNFVVSVGIILTNKLVMGQ-----VGFNFPIFLTVIHYAVAWILLAIFKAF-------SIIP-VSPPAITT--PFS--SL  596 (762)
Q Consensus       534 ~~~v~Sv~ii~~NK~vl~~-----~gF~~Pl~Lt~~q~l~a~ill~i~~~~-------~~~~-~~~~~~~~--~~~--~l  596 (762)
                      +..++++.-++..||.=+-     .||..|.+-+..-|+--+.-++++...       |... ........  |++  .+
T Consensus        10 imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lf   89 (372)
T KOG3912|consen   10 IMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLF   89 (372)
T ss_pred             hhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCccee
Confidence            3445666677788997553     568889877766665543333332211       1111 00000111  222  35


Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-------
Q 041515          597 FALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE-------  669 (762)
Q Consensus       597 ~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~-------  669 (762)
                      +|=+++-..+..+.+++|.+.+.|-|||+|.+.+.|+.+++..|++.+.+..+|+++..+++|++++++.|..       
T Consensus        90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~  169 (372)
T KOG3912|consen   90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYT  169 (372)
T ss_pred             cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcc
Confidence            5667776677778899999999999999999878888999999999999999999999999999999887642       


Q ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 041515          670 ---FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLAL  721 (762)
Q Consensus       670 ---fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~  721 (762)
                         --..|..+.+++-+..|++.++-++.+++++.+|.+.+.|-..++++++..+
T Consensus       170 d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL  224 (372)
T KOG3912|consen  170 DYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLL  224 (372)
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHH
Confidence               2378999999999999999999999999999999999999999997766443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.92  E-value=7.4e-09  Score=107.66  Aligned_cols=191  Identities=13%  Similarity=0.117  Sum_probs=144.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcc-hhHHHHHHHhhhHHH-HHH
Q 041515          558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN-SVGFYQMSKIAVTPT-IVL  635 (762)
Q Consensus       558 Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yv-sVs~~qmlKsas~P~-~vl  635 (762)
                      -.++|+.||++.++-..+..  ..+  ...+.+.|.+.++..-.+|....+.+|.+++|. |+|.+.++|| ..++ .++
T Consensus        33 gNLITFaqFlFia~eGlif~--skf--~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRs-gsll~nM~  107 (330)
T KOG1583|consen   33 GNLITFAQFLFIATEGLIFT--SKF--FTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRS-GSLLANMI  107 (330)
T ss_pred             eeehHHHHHHHHHHhceeee--ccc--cccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEec-CcHHHHHH
Confidence            46899999998777665552  112  122245677777777777778888999999985 9999999997 4555 589


Q ss_pred             HHHHHhcccccHHHHHHHHHHHHhhheeeecCc---c--------------cc--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515          636 AEFILFSKTISYKKVLALAIVSVGVAVATVTDL---E--------------FN--IFGAIIAVAWIIPSAINKILWSNLQ  696 (762)
Q Consensus       636 l~~l~lgek~s~~~~lsLlli~~GV~la~~~d~---~--------------fs--~~G~ilalls~l~~Al~~V~~kkll  696 (762)
                      ..+++.|+++|..++.|++++++|++++++...   .              +-  .+|+.+..++.+.+|.-+++++...
T Consensus       108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y  187 (330)
T KOG1583|consen  108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY  187 (330)
T ss_pred             HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887321   0              11  4699999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH-HhcCCccc-c--------cccC-ChhHHHHHHHHHHHHHHH
Q 041515          697 QQGNWTALALMWKTTPVTVFFLLALM-PWLDPPGV-L--------FYKW-NLNNSSAIFISALLGFLL  753 (762)
Q Consensus       697 k~~~lns~~Ll~y~~p~s~i~Ll~~~-~~~e~~~v-~--------~~~w-~~~~~~~i~lsgvlgf~l  753 (762)
                      ++++-++-+.++|+..++.+++++.. .+...+.. +        ..+. -+..|..++.+++.-++.
T Consensus       188 ~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~C  255 (330)
T KOG1583|consen  188 QKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFC  255 (330)
T ss_pred             HHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999998887543 12111111 0        0111 234688888888776653

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.84  E-value=3e-08  Score=107.10  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc--------ccc
Q 041515          600 GVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL--------EFN  671 (762)
Q Consensus       600 gl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~--------~fs  671 (762)
                      +.+..+...+.|.||.|.+|+..+++-|++.-|+.+++.+|-++++++.+.+++++.++||++++.+|.        +-.
T Consensus       166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~  245 (416)
T KOG2765|consen  166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP  245 (416)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence            333446677889999999999999998766667777777777899999999999999999999999865        234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515          672 IFGAIIAVAWIIPSAINKILWSNLQQQG--NWTALALMWKTTPVTVFFLLALMPWLD  726 (762)
Q Consensus       672 ~~G~ilalls~l~~Al~~V~~kkllk~~--~lns~~Ll~y~~p~s~i~Ll~~~~~~e  726 (762)
                      ..|.++++++++.+|+|.++.++...+.  ++|--.+.-|..++.++++.|...+.+
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~  302 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD  302 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            8999999999999999999999887554  466555566788888777776555443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.84  E-value=6.1e-07  Score=96.08  Aligned_cols=102  Identities=16%  Similarity=0.102  Sum_probs=84.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc-cc
Q 041515          593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL-EF  670 (762)
Q Consensus       593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~-~f  670 (762)
                      +..++..++...+...+.+.++++.+++...++-. +.|++ ++++++++||+++++.+++++++++|+++....+. ..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~  141 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLAR-SSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQH  141 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHh-hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence            33344455556778888899999999999999974 67876 78899999999999999999999999988765432 35


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515          671 NIFGAIIAVAWIIPSAINKILWSNL  695 (762)
Q Consensus       671 s~~G~ilalls~l~~Al~~V~~kkl  695 (762)
                      +..|+.+++++++++|+|.++.++.
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~  166 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAA  166 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccc
Confidence            6679999999999999999987665

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.81  E-value=1.7e-08  Score=97.57  Aligned_cols=89  Identities=27%  Similarity=0.396  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-------C--ChhH
Q 041515          674 GAIIAVAWIIPSAINKILWSNLQQQ-----GNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYK-------W--NLNN  739 (762)
Q Consensus       674 G~ilalls~l~~Al~~V~~kkllk~-----~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~-------w--~~~~  739 (762)
                      |++++++|+++.|+++++.++++++     .+.+++++++|+++++++++++.+++.|++......       +  ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            8999999999999999999999987     689999999999999999999999999987643321       1  2356


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 041515          740 SSAIFISALLGFLLQWSGALALG  762 (762)
Q Consensus       740 ~~~i~lsgvlgf~ln~s~fl~Ig  762 (762)
                      +..++++|+++|++|+++|++|+
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~  103 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIK  103 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            88999999999999999999985

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.59  E-value=6.6e-06  Score=88.85  Aligned_cols=167  Identities=14%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCCCCCCCCccchhHHHHHHHHHHHH
Q 041515          528 PVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIPVSPPAITTPFSSLFALGVVMSFA  606 (762)
Q Consensus       528 ~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~~~~~~~~~~~~~l~plgl~~~l~  606 (762)
                      .+.++++|....+..    |.+.   +++.|.++   ++.++++++.+.. ..+ .|.  ......+..-+..|++++..
T Consensus         6 ~lia~~~wGs~g~~~----k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~-~~~--~~~~~~~~~g~l~G~~w~ig   72 (290)
T TIGR00776         6 ALIPALFWGSFVLIN----VKIG---GGPYSQTL---GTTFGALILSIAIAIFV-LPE--FWALSIFLVGLLSGAFWALG   72 (290)
T ss_pred             HHHHHHHHhhhHHHH----hccC---CCHHHHHH---HHHHHHHHHHHHHHHHh-CCc--ccccHHHHHHHHHHHHHHhh
Confidence            344566665554333    5544   46655554   3555555444332 222 111  11111111222334446666


Q ss_pred             HHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHH----HHHHHHHHHhhheeeecCcc-------cc-HH
Q 041515          607 TGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKK----VLALAIVSVGVAVATVTDLE-------FN-IF  673 (762)
Q Consensus       607 i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~----~lsLlli~~GV~la~~~d~~-------fs-~~  673 (762)
                      ..+...|.+|++++....+-+...|++ ++.+.+++||+.+.+.    +++++++++|+++.+..+.+       .+ ..
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~  152 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK  152 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh
Confidence            678888999999999987764344544 6789999999999999    99999999999998764322       34 78


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 041515          674 GAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTT  711 (762)
Q Consensus       674 G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~  711 (762)
                      |+++++++.++++.|.+..+..    ..+|....+.+.
T Consensus       153 Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~  186 (290)
T TIGR00776       153 GILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQA  186 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHH
Confidence            9999999999999999998754    367777644443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.53  E-value=5e-07  Score=83.13  Aligned_cols=117  Identities=17%  Similarity=0.322  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchh
Q 041515          542 IILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKA-FSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSV  619 (762)
Q Consensus       542 ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsV  619 (762)
                      ..+++|...++  ++ |..+++++++++.+ +.++.. .+..+.... ....+..++.++++ .+++..+.+.++++.++
T Consensus         6 ~~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   80 (126)
T PF00892_consen    6 YSVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNL-SPRQWLWLLFLGLLGTALAYLLYFYALKYISA   80 (126)
T ss_pred             HHHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCC-ChhhhhhhhHhhccceehHHHHHHHHHHhcch
Confidence            34567888875  67 89999999999986 333321 111111122 22234556667776 57899999999999999


Q ss_pred             HHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheee
Q 041515          620 GFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVAT  664 (762)
Q Consensus       620 s~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~  664 (762)
                      +..+++.. +.|++ ++++++++||++++.++++++++++|++++.
T Consensus        81 ~~~~~~~~-~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   81 SIVSILQY-LSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999995 78876 7889999999999999999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.34  E-value=3.3e-07  Score=95.14  Aligned_cols=189  Identities=15%  Similarity=0.182  Sum_probs=125.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCccchhHHHHHHHHHH
Q 041515          526 CGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPV-SPPAITTPFSSLFALGVVMS  604 (762)
Q Consensus       526 ~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~-~~~~~~~~~~~l~plgl~~~  604 (762)
                      .+.+...+. |.++.++++..|.+..+     |..+...++++-.+..+.+.-....+. .|...|.   .++.-|++-.
T Consensus        38 ~gl~l~~vs-~ff~~~~vv~t~~~e~~-----p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~---~LiLRg~mG~  108 (346)
T KOG4510|consen   38 LGLLLLTVS-YFFNSCMVVSTKVLEND-----PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRK---WLILRGFMGF  108 (346)
T ss_pred             cCceehhhH-HHHhhHHHhhhhhhccC-----hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEE---EEEeehhhhh
Confidence            444444444 56777888887877643     888888887666655554421111111 1222232   2344566666


Q ss_pred             HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee-----cCc---------c
Q 041515          605 FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV-----TDL---------E  669 (762)
Q Consensus       605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~-----~d~---------~  669 (762)
                      .++.+..+|++|+|++=+.++- ++.|++ .++++.++||+++....++..+.+.||++..-     ||.         +
T Consensus       109 tgvmlmyya~~~mslaDA~vIt-FssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~  187 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVIT-FSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE  187 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEE-ecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc
Confidence            7777889999999999999987 789965 89999999999999999999999999999764     221         2


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515          670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLD  726 (762)
Q Consensus       670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e  726 (762)
                      .+..|.+.++.+++..|---+..+++.+  +.+..-.+.|...++.+.-++.....+
T Consensus       188 ~~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig  242 (346)
T KOG4510|consen  188 YDIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIG  242 (346)
T ss_pred             ccCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhcc
Confidence            3567888888877776665566676654  345444455555555555444333333

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.22  E-value=0.00014  Score=75.73  Aligned_cols=170  Identities=16%  Similarity=0.068  Sum_probs=117.8

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 041515          545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQM  624 (762)
Q Consensus       545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qm  624 (762)
                      +-|.+|-.  +. |.-+++++..++++++..+.+....   +++ +..+..+++.|+..+++..+.+.|+..+|.+....
T Consensus        30 ~Ak~LFP~--vG-~~g~t~lRl~~aaLIll~l~RPwr~---r~~-~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVA  102 (292)
T COG5006          30 FAKSLFPL--VG-AAGVTALRLAIAALILLALFRPWRR---RLS-KPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVA  102 (292)
T ss_pred             HHHHHccc--cC-hhhHHHHHHHHHHHHHHHHhhHHHh---ccC-hhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence            34666543  44 8889999999999887766432111   122 23466788999999999999999999999999988


Q ss_pred             HHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeec--C-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 041515          625 SKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVT--D-LEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNW  701 (762)
Q Consensus       625 lKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~--d-~~fs~~G~ilalls~l~~Al~~V~~kkllk~~~l  701 (762)
                      +- ++-|+.+.   ++..++..--.|+++.  +.|..+..-.  + -+.|..|.++++++..||++|-+..++.-+  ..
T Consensus       103 iE-F~GPL~vA---~~~sRr~~d~vwvaLA--vlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~  174 (292)
T COG5006         103 IE-FTGPLAVA---LLSSRRLRDFVWVALA--VLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AE  174 (292)
T ss_pred             hh-hccHHHHH---HHhccchhhHHHHHHH--HHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cC
Confidence            87 78887631   3334555545555554  4554443332  2 367999999999999999999999888764  34


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515          702 TALALMWKTTPVTVFFLLALMPWLDPPG  729 (762)
Q Consensus       702 ns~~Ll~y~~p~s~i~Ll~~~~~~e~~~  729 (762)
                      ++..-+.+-..++.++.+|++..-.++.
T Consensus       175 ~g~~g~a~gm~vAaviv~Pig~~~ag~~  202 (292)
T COG5006         175 HGTAGVAVGMLVAALIVLPIGAAQAGPA  202 (292)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhhhcchh
Confidence            4445555566677777777776544433

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.15  E-value=4.9e-07  Score=93.30  Aligned_cols=192  Identities=15%  Similarity=0.162  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 041515          538 VSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN  617 (762)
Q Consensus       538 ~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yv  617 (762)
                      ++.+..++|-++-.. +-+-|..=+++-+..-+++-.....++. +.    -...|++++.++++-.-+..+--.+++|.
T Consensus        29 ~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~----~~~~~~hYilla~~DVEaNy~vV~AyQyT  102 (336)
T KOG2766|consen   29 LITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-KY----IKAKWRHYILLAFVDVEANYFVVKAYQYT  102 (336)
T ss_pred             HHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-HH----HHHHHHHhhheeEEeecccEEEeeehhhc
Confidence            444556677776554 4566766555554443333222222221 11    12245667777766544444455789999


Q ss_pred             hhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc--------ccHHHHHHHHHHHHHHHHHH
Q 041515          618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE--------FNIFGAIIAVAWIIPSAINK  689 (762)
Q Consensus       618 sVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~--------fs~~G~ilalls~l~~Al~~  689 (762)
                      +..-.+.+-+..+|.+++++|+|++.|+.+.++.++++.++||+++.+.|..        ....|.+++++++-++|+.+
T Consensus       103 smtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSN  182 (336)
T KOG2766|consen  103 SMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSN  182 (336)
T ss_pred             chHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeecc
Confidence            9999999987789999999999999999999999999999999999887742        23679999999999999999


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChh
Q 041515          690 ILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLN  738 (762)
Q Consensus       690 V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~  738 (762)
                      +.-+.+.+  +.+-.++|....+++.++-.+= +++|...+....|+..
T Consensus       183 v~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~  228 (336)
T KOG2766|consen  183 VSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSA  228 (336)
T ss_pred             ccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHH
Confidence            98777765  5788888888888887776655 5667666655566643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.14  E-value=0.00021  Score=76.00  Aligned_cols=167  Identities=13%  Similarity=0.102  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH-cCCCC-CCCCCCccc--hhHHHHHHHH
Q 041515          527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKA-FSIIP-VSPPAITTP--FSSLFALGVV  602 (762)
Q Consensus       527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~-~~~~~~~~~--~~~l~plgl~  602 (762)
                      +.++++..|+..+. +-++-|++-.   .+ |.-+...|.+.++.++.+... .+..+ .... .+.|  +..+...+++
T Consensus         8 Gil~~l~Ay~lwG~-lp~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~-~~~p~~~~~~~l~a~l   81 (293)
T COG2962           8 GILLALLAYLLWGL-LPLYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQL-LKQPKTLLMLALTALL   81 (293)
T ss_pred             hhHHHHHHHHHHHH-HHHHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhCcHHHHHHHHHHHH
Confidence            55666666666554 3456688754   45 778888888888777655432 11111 0000 1111  2233334444


Q ss_pred             HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHH
Q 041515          603 MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAW  681 (762)
Q Consensus       603 ~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls  681 (762)
                      .+++-+..-+|..+-.+--..+=. +..|.+ +++..+|+|||+++.+++++++..+||..-++.-.++++....+++  
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY-~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~--  158 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGY-FINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALAL--  158 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH--
Confidence            445555555555553333333333 468987 8889999999999999999999999999999988889988777765  


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 041515          682 IIPSAINKILWSNLQQQGNWTALALMW  708 (762)
Q Consensus       682 ~l~~Al~~V~~kkllk~~~lns~~Ll~  708 (762)
                        ++++|... +|.   .++++.+-+.
T Consensus       159 --sf~~Ygl~-RK~---~~v~a~~g~~  179 (293)
T COG2962         159 --SFGLYGLL-RKK---LKVDALTGLT  179 (293)
T ss_pred             --HHHHHHHH-HHh---cCCchHHhHH
Confidence              78899887 433   3466555443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.11  E-value=9.9e-06  Score=75.10  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=64.3

Q ss_pred             cchhHHHHHHHHHH-HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc
Q 041515          591 TPFSSLFALGVVMS-FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL  668 (762)
Q Consensus       591 ~~~~~l~plgl~~~-l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~  668 (762)
                      .++..++..|++.. ++..+..+|++|.+ +...++.+ +.|++ ++++.+++||+++++++++++++++|++++.++|.
T Consensus        32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~-~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFS-LSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            34555666677654 88899999999999 67777774 78876 78999999999999999999999999999988775


Q ss_pred             c
Q 041515          669 E  669 (762)
Q Consensus       669 ~  669 (762)
                      +
T Consensus       110 ~  110 (113)
T PF13536_consen  110 T  110 (113)
T ss_pred             c
Confidence            4

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.09  E-value=1e-05  Score=80.75  Aligned_cols=111  Identities=18%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc--c
Q 041515          592 PFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL--E  669 (762)
Q Consensus       592 ~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~--~  669 (762)
                      .+.+..|++++.++...+-..+|+.++.+-.+.+-.+-..|+.+++++++|.++..-+++++++.+.|+++.++.|-  .
T Consensus        52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a  131 (290)
T KOG4314|consen   52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA  131 (290)
T ss_pred             eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence            45567788888888888888999999999998887655567778899999999999999999999999999998774  4


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 041515          670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWT  702 (762)
Q Consensus       670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~ln  702 (762)
                      .++.|+..+++|.++.|+|.++-|...-..++.
T Consensus       132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G  164 (290)
T KOG4314|consen  132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFG  164 (290)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch
Confidence            679999999999999999999998877544443

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.83  E-value=0.00029  Score=66.35  Aligned_cols=129  Identities=14%  Similarity=0.131  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCCCC-CCCCccchhHHHHHHHHHHHHHHH
Q 041515          532 MTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIPVS-PPAITTPFSSLFALGVVMSFATGL  609 (762)
Q Consensus       532 i~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~~~-~~~~~~~~~~l~plgl~~~l~i~l  609 (762)
                      .++-.++.....++-|.-+..  .. |.+-++++.++..+++..+. ..|....+ .. ....|..+..-|+..+++-.+
T Consensus         8 ALLsA~fa~L~~iF~KIGl~~--vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGla~glswl~   83 (140)
T COG2510           8 ALLSALFAGLTPIFAKIGLEG--VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGLAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHHHHHHHHHH
Confidence            333344445556778988874  55 88899999999888877654 33433322 12 223455566667667778888


Q ss_pred             HHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          610 ANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       610 ~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      -..+++.-.+|-..-+-. +.|+ +++++++|+||++|...|++++++++|+++.+.
T Consensus        84 Yf~ALk~G~as~VvPldk-~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          84 YFRALKKGKASRVVPLDK-TSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHhcCCcceEEEccc-ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            888998888877665554 4565 589999999999999999999999999998764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.76  E-value=0.00078  Score=70.68  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=80.8

Q ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchhHH
Q 041515          543 ILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSVGF  621 (762)
Q Consensus       543 i~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsVs~  621 (762)
                      .++.|......+-+ +..+..++++++.+++.+.......+. .. ....+..++.++++ ..+...+.+.++++.+++.
T Consensus       144 ~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  220 (260)
T TIGR00950       144 TVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNP-QA-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA  220 (260)
T ss_pred             HHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence            34567666542222 445555788888877765543321111 11 12234445556665 4578888899999999999


Q ss_pred             HHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhh
Q 041515          622 YQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVA  661 (762)
Q Consensus       622 ~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~  661 (762)
                      .+++. .+.|++ ++++++++||++++..+++++++++|+.
T Consensus       221 ~s~~~-~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       221 ASILA-LAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            99998 588976 7889999999999999999999999974

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.65  E-value=0.001  Score=74.15  Aligned_cols=122  Identities=11%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CCCCCCC--CCCccchhHHHHHHHHHHHHHHHHHhhhhc
Q 041515          540 VGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SIIPVSP--PAITTPFSSLFALGVVMSFATGLANTSLKH  616 (762)
Q Consensus       540 v~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~~~~--~~~~~~~~~l~plgl~~~l~i~l~N~SL~y  616 (762)
                      +..++. |.+...  ++.+..+++++++++.+.+.+.... ...+...  ......+..++..+++.++..++.|+++++
T Consensus       203 ~~~il~-~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~  279 (358)
T PLN00411        203 VSFILQ-AHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRH  279 (358)
T ss_pred             HHHHHH-HHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333343 444443  5655677888888877665443221 1011100  001111122444455555677789999999


Q ss_pred             chhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          617 NSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       617 vsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .+.+...+.- ...|++ ++++++++||++++..+++.+++++|+.++..
T Consensus       280 ~ga~~as~~~-~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        280 KGPLYLAIFK-PLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             cCchHHHHHH-hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            9999999998 589987 88899999999999999999999999988764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.60  E-value=0.0017  Score=62.53  Aligned_cols=133  Identities=15%  Similarity=0.121  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHHHHHHHHHHHc-CCCC---C-CCCC------Cccchh
Q 041515          531 AMTFNFVVSVGIILTNKLVMGQ-----VGFNFPIFLTVIHYAVAWILLAIFKAF-SIIP---V-SPPA------ITTPFS  594 (762)
Q Consensus       531 ai~~~~v~Sv~ii~~NK~vl~~-----~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~---~-~~~~------~~~~~~  594 (762)
                      +++..+..+ .-.++.|.++..     .+++ |+.+..+-..++++++.+.... ....   . ....      ....+.
T Consensus         5 ~l~s~~~~a-l~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T PF03151_consen    5 ALASSLFSA-LRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF   82 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence            334444444 444455666665     4566 7777777777777776665321 1111   0 0000      112344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          595 SLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       595 ~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .++..|++..+....+...++++|.-+++++.+...+++.+++.+++|+++++..++|+++.++|+++.++
T Consensus        83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            55556666667778888999999999999999777788888999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00803 nst UDP-galactose transporter

Probab=97.58  E-value=0.00031  Score=72.64  Aligned_cols=139  Identities=14%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             chhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc---------------------------c
Q 041515          617 NSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL---------------------------E  669 (762)
Q Consensus       617 vsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~---------------------------~  669 (762)
                      +++|....+|+....++++..+.+++++++..++++.++++.|+.+...+|.                           .
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            5778888888743334566677777888888888998888888875333322                           2


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccc----ccCChhHHHHHHH
Q 041515          670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF----YKWNLNNSSAIFI  745 (762)
Q Consensus       670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~----~~w~~~~~~~i~l  745 (762)
                      ..+.|....+.+++++++.+++.++..+..+.+.+.-.....+++.+..+......++.....    ..|+...|..++.
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence            347788889999999999999998876654333222233333333332222122222211111    1244455666666


Q ss_pred             HHHHHHHHHH
Q 041515          746 SALLGFLLQW  755 (762)
Q Consensus       746 sgvlgf~ln~  755 (762)
                      +++.++++.+
T Consensus       162 ~a~~~~~v~~  171 (222)
T TIGR00803       162 NVGGGLCIGG  171 (222)
T ss_pred             HHhcCceeee
Confidence            6555555443

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.54  E-value=0.0012  Score=61.39  Aligned_cols=63  Identities=17%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          602 VMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       602 ~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .++++..+...+++++|+|....+-+ +.|++ +++++++|||++++.++++++++++|+++.+.
T Consensus        46 ~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         46 CLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            36788899999999999999988886 67765 88999999999999999999999999988654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.53  E-value=0.0013  Score=70.82  Aligned_cols=109  Identities=20%  Similarity=0.125  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-H
Q 041515          557 FPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-V  634 (762)
Q Consensus       557 ~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-v  634 (762)
                      .|...++++++++.+++.++......+....+....+..++..+++ ..+...+.+.++++.+.+...++- +..|++ +
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~-~l~Pi~a~  254 (292)
T PRK11272        176 VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYA-YVNPVVAV  254 (292)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHH
Confidence            3566778898888877665532211111110111234455566665 457778889999999999999997 689987 7


Q ss_pred             HHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515          635 LAEFILFSKTISYKKVLALAIVSVGVAVATVT  666 (762)
Q Consensus       635 ll~~l~lgek~s~~~~lsLlli~~GV~la~~~  666 (762)
                      +++++++||++++..+++.+++++|+.+....
T Consensus       255 i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        255 LLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999887543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.05  E-value=0.18  Score=62.13  Aligned_cols=162  Identities=18%  Similarity=0.291  Sum_probs=97.2

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhh---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALK---ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED  358 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r---~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e  358 (762)
                      .++.+.+.|..++...+++.+....-+.+|   ...++++.+++++...+..|...-...++..+.+..++.++++..+.
T Consensus       286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n  365 (1074)
T KOG0250|consen  286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN  365 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577778888888888888888888778888   44455555555554444333333233344444455555556666666


Q ss_pred             HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515          359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVD-----TDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREA  433 (762)
Q Consensus       359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~-----~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~a  433 (762)
                      .+.+++.++.             ++-..|++++||-     .++.++-.+.+.|++|+..+++.+++-=...+++     
T Consensus       366 ~i~~~k~~~d-------------~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~-----  427 (1074)
T KOG0250|consen  366 SIRKLKKEVD-------------RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV-----  427 (1074)
T ss_pred             HHHHHHHHHH-------------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            6666655544             4455677777776     4555666667777777777776555433222221     


Q ss_pred             CccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 041515          434 KKDQSFEQVSEKILATDRVRREIAEYEKKLAAV  466 (762)
Q Consensus       434 kkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~  466 (762)
                           -+.+-+.=++.+.+.++|++|..+|...
T Consensus       428 -----~~~~~~~~ee~~~i~~~i~~l~k~i~~~  455 (1074)
T KOG0250|consen  428 -----KEKAKEEEEEKEHIEGEILQLRKKIENI  455 (1074)
T ss_pred             -----HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                 1223333355667778888888887743

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.03  E-value=0.015  Score=62.84  Aligned_cols=69  Identities=14%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             HHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          596 LFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       596 l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      ++.++++ ..+...+.|.++++.+.+..+++- +..|++ ++++++++||++++..+++.+++++|++..+.
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            4556665 457777889999999999999997 689987 88899999999999999999999999887643

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.97  E-value=0.05  Score=64.00  Aligned_cols=210  Identities=12%  Similarity=0.125  Sum_probs=111.4

Q ss_pred             hhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHH
Q 041515          253 AKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEA  332 (762)
Q Consensus       253 ~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~  332 (762)
                      ..+.++.++++++...+..++-+..   ....+++.++..++....+...+..|++..+..+.+-..+.        .+.
T Consensus       185 ~l~~~i~~l~~~i~~~~~~i~~~~~---~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i--------~~~  253 (562)
T PHA02562        185 TLDMKIDHIQQQIKTYNKNIEEQRK---KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI--------EDP  253 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccH
Confidence            3344455555555544444443322   13467888888888888888888888888777765553221        111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHhcCCCc--cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH
Q 041515          333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSA--DLEKQPKV--ASRRSYIERIKEITKNSRKVDTDIERILKETRELQ  408 (762)
Q Consensus       333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~--~~~~~~k~--~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lq  408 (762)
                      .   +.+++++.++..+..++...+..++.+..  .+..-...  .. .....++.+.+..+++|..++...+.+....+
T Consensus       254 ~---~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~  329 (562)
T PHA02562        254 S---AALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELEEIM  329 (562)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   12344444555555555444444444421  11111111  11 33445555666666677777777777666766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhh
Q 041515          409 LESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENE  488 (762)
Q Consensus       409 kein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~  488 (762)
                      .+.+.+..++.+.-..+.+.          -..+.+.+.+...+..+|..||.......   ..|+++..+++++..+.+
T Consensus       330 ~~~~~~~~~i~el~~~i~~~----------~~~i~~~~~~~~~l~~ei~~l~~~~~~~~---~~l~~l~~~l~~~~~~~~  396 (562)
T PHA02562        330 DEFNEQSKKLLELKNKISTN----------KQSLITLVDKAKKVKAAIEELQAEFVDNA---EELAKLQDELDKIVKTKS  396 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhchH---HHHHHHHHHHHHHHHHHH
Confidence            66666665554443222211          12244555666666666666666633222   346666666666666655


Q ss_pred             hh
Q 041515          489 FL  490 (762)
Q Consensus       489 ~~  490 (762)
                      .+
T Consensus       397 ~~  398 (562)
T PHA02562        397 EL  398 (562)
T ss_pred             HH
Confidence            33

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.96  E-value=0.069  Score=67.99  Aligned_cols=18  Identities=11%  Similarity=0.121  Sum_probs=11.1

Q ss_pred             cccCChHHHHHHHHHHHH
Q 041515          127 FLYPSEEDLYKLIRFLVE  144 (762)
Q Consensus       127 fLY~~~~dlr~l~~fLie  144 (762)
                      ..=-+..+-+.++-||-+
T Consensus       552 ivv~~~~~a~~~i~~l~~  569 (1164)
T TIGR02169       552 VVVEDDAVAKEAIELLKR  569 (1164)
T ss_pred             EEECCHHHHHHHHHHHHh
Confidence            334566677777777654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.95  E-value=0.12  Score=65.68  Aligned_cols=15  Identities=13%  Similarity=0.299  Sum_probs=8.3

Q ss_pred             HHHHHHHHhcCCCCC
Q 041515          107 TDISSAIKNLGYIGD  121 (762)
Q Consensus       107 ~~lA~a~k~~Gy~~d  121 (762)
                      .++...+...|...+
T Consensus       120 ~~~~~~l~~~~~~~~  134 (1164)
T TIGR02169       120 SEIHDFLAAAGIYPE  134 (1164)
T ss_pred             HHHHHHHHHcCCCcC
Confidence            345555666665444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.91  E-value=0.017  Score=62.38  Aligned_cols=72  Identities=18%  Similarity=0.289  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      +..++..++..++...+.+.++++.+.+..+++- +..|++ ++++++++||++++..+++++++++|+.+...
T Consensus       215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~-~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATAS-YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            4345555555667788899999999999999997 689987 88899999999999999999999999877643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.90  E-value=0.0075  Score=56.94  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHH-HhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecC
Q 041515          596 LFALGVVMSFATGLANTSLKHNSVGFYQMS-KIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTD  667 (762)
Q Consensus       596 l~plgl~~~l~i~l~N~SL~yvsVs~~qml-Ksas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d  667 (762)
                      .+...++++++..+...+++++|++..-.+ ....+..++++++++|||++++.+++++.++++|+++.-..+
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            444566688899999999999999984444 333445568889999999999999999999999998875543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.84  E-value=0.025  Score=61.20  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             hhHHHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515          593 FSSLFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT  666 (762)
Q Consensus       593 ~~~l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~  666 (762)
                      +..++.++++ ..+...+.+.++++.+.+...++- +..|++ ++++++++||.+++..+++.+++++|+.+...+
T Consensus       214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLS-LLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            4455666655 446778888999999998888886 589987 788999999999999999999999999876543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.83  E-value=0.28  Score=62.98  Aligned_cols=102  Identities=14%  Similarity=0.268  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHH
Q 041515          379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAE  458 (762)
Q Consensus       379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~  458 (762)
                      +.....++-+++++.+.++.++-.+...+...++.+..+..+......+..-..-.-++..   ...     .+.+++..
T Consensus       882 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~i~~  953 (1163)
T COG1196         882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT---LET-----ELEREIER  953 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---hhH-----HHHHHHHH
Confidence            4455566666666666666666666666666666665555555544444332222211111   000     78888888


Q ss_pred             HHHHHHHHhccc----cchhhhhhhHHHHHHHhh
Q 041515          459 YEKKLAAVASRS----LNVDKLQADVDVIMKENE  488 (762)
Q Consensus       459 le~qi~~~~~k~----~nle~i~~D~~~i~~en~  488 (762)
                      ++.+|+....=|    ..+|...+.|+.+..+.+
T Consensus       954 le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~  987 (1163)
T COG1196         954 LEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE  987 (1163)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            988887776655    445666666666666554

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.82  E-value=0.69  Score=49.90  Aligned_cols=177  Identities=16%  Similarity=0.227  Sum_probs=92.3

Q ss_pred             HHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 041515          308 DALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQ---SVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIK  384 (762)
Q Consensus       308 e~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~---~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~  384 (762)
                      -.-|..+.++..+++++........+.....++++..+..   ..--.+...+..+.+|....+..|=+.+..   +.+.
T Consensus        61 r~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E---~~lv  137 (294)
T COG1340          61 REERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE---RELV  137 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHH---HHHH
Confidence            3344445555555555433333333322223333322222   111223344555555555555554443322   2333


Q ss_pred             HHHhhhhhhHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHH
Q 041515          385 EITKNSRKVDTDIERILKE---TRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEK  461 (762)
Q Consensus       385 Eiv~nirKQ~~eI~Kil~d---tr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~  461 (762)
                      +=++-++|+-+++.|++..   ++.|+.++..+..+..-.=.-+.++.-+-   +++-.+++++.++.+.++.+..++..
T Consensus       138 q~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea---qe~he~m~k~~~~~De~Rkeade~he  214 (294)
T COG1340         138 QKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA---QEYHEEMIKLFEEADELRKEADELHE  214 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333377777777766653   44444666555555433333333332221   44567889999999999999988888


Q ss_pred             HHHHHhccc----cchhhhhhhHHHHHHHhhhh
Q 041515          462 KLAAVASRS----LNVDKLQADVDVIMKENEFL  490 (762)
Q Consensus       462 qi~~~~~k~----~nle~i~~D~~~i~~en~~~  490 (762)
                      ++.....+-    .-+..+.++++.+.+.-..|
T Consensus       215 ~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l  247 (294)
T COG1340         215 EFVELSKKIDELHEEFRNLQNELRELEKKIKAL  247 (294)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887666544    44556666666666655544

>PRK02224 chromosome segregation protein; Provisional

Probab=96.81  E-value=0.24  Score=61.61  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515          337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK  372 (762)
Q Consensus       337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k  372 (762)
                      .++++++.+++.+..+++..++.+.++..+++.+.+
T Consensus       265 ~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~  300 (880)
T PRK02224        265 ETIAETEREREELAEEVRDLRERLEELEEERDDLLA  300 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555544444433

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.78  E-value=0.0073  Score=65.34  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH-cCCCCCCC--C-CC--ccchhH----HHHHHH-HHHHHHHHHHh
Q 041515          544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKA-FSIIPVSP--P-AI--TTPFSS----LFALGV-VMSFATGLANT  612 (762)
Q Consensus       544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~~~~--~-~~--~~~~~~----l~plgl-~~~l~i~l~N~  612 (762)
                      ++.|.+....+++ |+.++.+++.++++++.+... ....+..+  . ..  ......    .+..++ ++.+...+.+.
T Consensus       162 v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (302)
T TIGR00817       162 IFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFM  240 (302)
T ss_pred             HHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555522354 888999999888877766532 12111000  0 00  000001    111221 22222245557


Q ss_pred             hhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          613 SLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       613 SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      ++++++...++++- ...|++ ++++++++||++++..+++.+++++|+.+...
T Consensus       241 ~l~~~sa~t~sv~~-~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       241 LLGRVSPLTHSVGN-CMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHccCCchHHHHHh-hhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            89999999999996 578987 57899999999999999999999999987653

specificities overlap.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.77  E-value=0.037  Score=59.17  Aligned_cols=127  Identities=13%  Similarity=0.045  Sum_probs=89.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH--HHHHHHHHhcccccHHHH----HHHHHHHHhhheeee
Q 041515          592 PFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT--IVLAEFILFSKTISYKKV----LALAIVSVGVAVATV  665 (762)
Q Consensus       592 ~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~--~vll~~l~lgek~s~~~~----lsLlli~~GV~la~~  665 (762)
                      .+..-+..|++.+++-.+...|++++.||...=+-. ..-+  .+++..++|||-.+...+    ++++++++|+++.++
T Consensus        44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiSt-g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPIST-GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccch-hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            344556678888888888889998887765433321 2222  367888999986665554    589999999999998


Q ss_pred             cCcc--------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041515          666 TDLE--------FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMP  723 (762)
Q Consensus       666 ~d~~--------fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~  723 (762)
                      .|.+        ....|+...+.+.+.+.+|.++.+.    .+.|++...+=++.-.++..+++..
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~lPqaiGm~i~a~i~~~  184 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFLPQAIGMLIGAFIFNL  184 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHHHHHHHHHHHHHHHhh
Confidence            7642        2356999999999999999988543    4689988888555544444444444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.75  E-value=0.35  Score=59.70  Aligned_cols=137  Identities=20%  Similarity=0.294  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHH--HhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWD--ALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDE  359 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe--~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~  359 (762)
                      .-+.|..+++.+...+.++.+....|+  ..-..+.+..+.|+.++.=         ..+-+.+.+++...++++.+++.
T Consensus       226 ~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W---------~~V~~~~~ql~~~~~~i~~~qek  296 (1074)
T KOG0250|consen  226 AKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAW---------AWVNEVERQLNNQEEEIKKKQEK  296 (1074)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555556666665555  2334445556666654330         02223333444444555555444


Q ss_pred             HHHHHHHHhcCCC--ccChH---HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          360 YSKLSADLEKQPK--VASRR---SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDD  427 (762)
Q Consensus       360 ~~~L~~~~~~~~k--~~~R~---~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~de  427 (762)
                      ...|.+++++.-.  ..-|+   .--.-|-++..+..-|++||.-.-+|.+.+.++.|.+..+..+....+++
T Consensus       297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~  369 (1074)
T KOG0250|consen  297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK  369 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444443311  12232   23367778888899999999999999999999999998888887776654

>PRK03918 chromosome segregation protein; Provisional

Probab=96.74  E-value=0.33  Score=60.37  Aligned_cols=30  Identities=13%  Similarity=0.261  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKE  312 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~  312 (762)
                      ...+.+|+..+++..+.+..+..+-+..+.
T Consensus       192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~  221 (880)
T PRK03918        192 EELIKEKEKELEEVLREINEISSELPELRE  221 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444433333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.68  E-value=0.39  Score=63.30  Aligned_cols=192  Identities=19%  Similarity=0.212  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhh---chHHHHHH-HHHHHHHHHHHHHHHHHHHhhHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYA---NELEAQAK-LLKLREVELERQSVLSEIRKRED  358 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~---~~~e~~~k-~~~ik~~~~~~~~~~~e~~~k~e  358 (762)
                      +.....|+..++...+...+|..+--+....+.+-.....+....   ...|.+++ .+++++..+.+..+.......+.
T Consensus      1328 ~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek 1407 (1930)
T KOG0161|consen 1328 EHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEK 1407 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444433333333322211   11122222 23444444444444444444455


Q ss_pred             HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-
Q 041515          359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQ-  437 (762)
Q Consensus       359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~-  437 (762)
                      ...+|..+++      .+..=.+|....+....|+..--+|++.+.|....++...-+...|...-.+.-+++-....+ 
T Consensus      1408 ~k~~l~~el~------d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1408 AKNRLQQELE------DLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred             HHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5555555554      244456778888999999999999999999999999999999999999999999998877744 


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhH
Q 041515          438 SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADV  480 (762)
Q Consensus       438 ~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~  480 (762)
                      ...++=+.-++.+.+.++|.||+.+++....+.-.+|+...++
T Consensus      1482 ~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677788899999999999886655444444444333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.67  E-value=0.24  Score=60.35  Aligned_cols=139  Identities=14%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHH---HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALKES---LEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED  358 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~p---l~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e  358 (762)
                      -+.-++.|+..++..++++++-...||+++..   |.-|..+++.+++..+..-.....++..+..++-.+...+..-+.
T Consensus       785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~  864 (1174)
T KOG0933|consen  785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK  864 (1174)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            36667889999999999999999999998765   344556666665544444444445666666666666666666666


Q ss_pred             HHHHHHHHHhcCCC-------cc-----ChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          359 EYSKLSADLEKQPK-------VA-----SRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR  420 (762)
Q Consensus       359 ~~~~L~~~~~~~~k-------~~-----~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R  420 (762)
                      .+.++.++++...+       .+     .-....+-+.++.--++|-+.|++|+-.|.....|+++.+-++.++
T Consensus       865 ~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w  938 (1174)
T KOG0933|consen  865 DVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW  938 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc
Confidence            66665555553322       11     1111333444445556677777777888888888887777776554

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.66  E-value=0.34  Score=56.99  Aligned_cols=18  Identities=0%  Similarity=0.111  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 041515          452 VRREIAEYEKKLAAVASR  469 (762)
Q Consensus       452 ~~rei~~le~qi~~~~~k  469 (762)
                      ..++...|+.+|+..+..
T Consensus       356 ~~~~~~~l~~ei~~l~~~  373 (562)
T PHA02562        356 LVDKAKKVKAAIEELQAE  373 (562)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            445555555555555554

>PRK02224 chromosome segregation protein; Provisional

Probab=96.63  E-value=0.66  Score=57.80  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH----------HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          284 FYLEQLDEQVGAKKHNLVELELQWDALKESL----------EEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEI  353 (762)
Q Consensus       284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl----------~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~  353 (762)
                      ...++|....++...++.++...-+.++..+          .+++..+++.+.....+......++.+++.+++....++
T Consensus       307 ~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l  386 (880)
T PRK02224        307 ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI  386 (880)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555566666666655555333          222333333332222222222334455556666666666


Q ss_pred             HhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 041515          354 RKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQ  415 (762)
Q Consensus       354 ~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~  415 (762)
                      ...++..+.+...++..+.  ....|-.++-++-..+..-++++..+-.-....++.++...
T Consensus       387 ~~l~~el~el~~~l~~~~~--~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        387 EELEEEIEELRERFGDAPV--DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             HHHHHHHHHHHHHHhcchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666665552  34556666666655555555555555554455555554443

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.61  E-value=0.021  Score=53.04  Aligned_cols=66  Identities=14%  Similarity=0.083  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhHHHHHHHh-hhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515          598 ALGVVMSFATGLANTSLKHNSVGFYQMSKI-AVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVA  663 (762)
Q Consensus       598 plgl~~~l~i~l~N~SL~yvsVs~~qmlKs-as~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la  663 (762)
                      .+.+.++++..+-..+++++|++..-.+=+ ..+..++++++++|||++++.+++++.++++|++..
T Consensus        40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            344557778888899999999998444432 233456888999999999999999999999999875

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.60  E-value=0.014  Score=53.72  Aligned_cols=67  Identities=22%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhhhhcchhHHH-HHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          599 LGVVMSFATGLANTSLKHNSVGFY-QMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       599 lgl~~~l~i~l~N~SL~yvsVs~~-qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .-++++++..+-..+++++|++.. .+--..-+..++++++++|||+.++.+++++.++++|++..-.
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            445577888888999999999984 4443323445688999999999999999999999999987644

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.60  E-value=0.01  Score=56.78  Aligned_cols=70  Identities=20%  Similarity=0.195  Sum_probs=55.5

Q ss_pred             HHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHH--HHhcccccHHHHHHHHHHHHhhheeeec
Q 041515          596 LFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEF--ILFSKTISYKKVLALAIVSVGVAVATVT  666 (762)
Q Consensus       596 l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~--l~lgek~s~~~~lsLlli~~GV~la~~~  666 (762)
                      ++.+|++ +.++..+.+.+++..+++...-+-+ ..+. +++.++  ++|||++++.++++++++++|+++....
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s-l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS-LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            3445554 7788999999999999999887765 4554 445555  3899999999999999999999987654

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.53  E-value=0.022  Score=52.60  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHH-HHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          597 FALGVVMSFATGLANTSLKHNSVGFYQ-MSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       597 ~plgl~~~l~i~l~N~SL~yvsVs~~q-mlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      +..-++++.+..+-..+++.+|++..- +--...+..++++++++|||++++.+++++.++++|++..-.
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            334555778888888999999998844 443223445688899999999999999999999999987643

>TIGR00606 rad50 rad50

Probab=96.51  E-value=0.51  Score=61.45  Aligned_cols=30  Identities=10%  Similarity=0.205  Sum_probs=14.6

Q ss_pred             HhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515          387 TKNSRKVDTDIERILKETRELQLESNSIQE  416 (762)
Q Consensus       387 v~nirKQ~~eI~Kil~dtr~lqkein~~~~  416 (762)
                      .+.+..-++++..+-...+.++++++..+.
T Consensus       983 ~~~ie~le~e~~~l~~~i~~l~kel~~~~~ 1012 (1311)
T TIGR00606       983 NAQLEECEKHQEKINEDMRLMRQDIDTQKI 1012 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=96.49  E-value=0.87  Score=56.94  Aligned_cols=144  Identities=11%  Similarity=0.134  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH-----HHHhhchHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLE-----ESLYANELEA---QAKLLKLREVELERQSVLSEIR  354 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~-----~~~~~~~~e~---~~k~~~ik~~~~~~~~~~~e~~  354 (762)
                      ...+..|+..+......+.+|...++++. ++.+++..++     +.+..- .+.   ...+ +|++++.++..+..++.
T Consensus       521 ~~~~~~l~~~l~~~~~~l~~le~~~~~~~-~l~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~l~e~~~~l~  597 (895)
T PRK01156        521 YNKIESARADLEDIKIKINELKDKHDKYE-EIKNRYKSLKLEDLDSKRTSW-LNALAVISLI-DIETNRSRSNEIKKQLN  597 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH-HHHHhHHHHh-hHHHHHHHHHHHHHHHH
Confidence            44556666666666667777777777666 4444444432     111100 000   0011 33444445555555555


Q ss_pred             hhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515          355 KREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFR  431 (762)
Q Consensus       355 ~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~  431 (762)
                      ..+...+.+..+++....-  ...|...+-+-+.+.+..+.++.+.-.+...++.+++.+...+..--...+++-+.
T Consensus       598 ~l~~~l~~le~~~~~~~~~--~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~  672 (895)
T PRK01156        598 DLESRLQEIEIGFPDDKSY--IDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI  672 (895)
T ss_pred             HHHhhHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            5555555555544433211  12366666666777777777777777777777777776666666654444444333

>PRK11637 AmiB activator; Provisional

Probab=96.47  E-value=0.15  Score=58.27  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=16.1

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK  317 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~  317 (762)
                      .+..+++++..++....++.++..+-+..+.-+...
T Consensus        94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.64  Score=55.26  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHH-------HHHHHHHHHHHHHH
Q 041515          340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIE-------RILKETRELQLESN  412 (762)
Q Consensus       340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~-------Kil~dtr~lqkein  412 (762)
                      ++|-.++..-.+++=.-....++|..+++.++..  -+.--.|+-++--.|-+||++|+       ....++.+||-+|.
T Consensus       419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k--~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik  496 (1118)
T KOG1029|consen  419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFK--LQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK  496 (1118)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344445555566655431  23445667777667777777664       45678888888888


Q ss_pred             HHHHHHHHHHH
Q 041515          413 SIQERLHRTYA  423 (762)
Q Consensus       413 ~~~~~l~Rtf~  423 (762)
                      -++++|.++-.
T Consensus       497 E~q~kl~~l~~  507 (1118)
T KOG1029|consen  497 ELQEKLQKLAP  507 (1118)
T ss_pred             HHHHHHHhhhh
Confidence            88888877643

>TIGR00606 rad50 rad50

Probab=96.45  E-value=0.66  Score=60.42  Aligned_cols=116  Identities=15%  Similarity=0.089  Sum_probs=56.2

Q ss_pred             HHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          350 LSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI  429 (762)
Q Consensus       350 ~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli  429 (762)
                      ..++...+..++.|..++.....+.+-...-..|-.+-+.++.-..++..+..+...++++|+.++.+++.-=..-..+-
T Consensus       798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~  877 (1311)
T TIGR00606       798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG  877 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555556555554433222222334444444444444555555577777777777777666655333322222


Q ss_pred             HhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041515          430 FREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAA  465 (762)
Q Consensus       430 f~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~  465 (762)
                      -+-.++..--.+|-+..++...+..+|.+++.+|+.
T Consensus       878 ~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~  913 (1311)
T TIGR00606       878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP  913 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            222333332334444444444444444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.45  E-value=0.057  Score=58.41  Aligned_cols=68  Identities=16%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheee
Q 041515          596 LFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVAT  664 (762)
Q Consensus       596 l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~  664 (762)
                      ++..++...+...+.+.++++.+.+..+.+- +..|++ ++++++++||++++..+++.+++++|+++..
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~-~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQ-YIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            3334555557788999999999999999997 689987 7889999999999999999999987776653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.44  E-value=0.37  Score=61.33  Aligned_cols=9  Identities=22%  Similarity=0.154  Sum_probs=3.8

Q ss_pred             HHHHHhhhh
Q 041515           74 LVSICGQSL   82 (762)
Q Consensus        74 ~v~~~~~cl   82 (762)
                      ++.|+.=||
T Consensus        39 ll~ai~~~l   47 (1179)
T TIGR02168        39 IVDAIRWVL   47 (1179)
T ss_pred             HHHHHHHHH
Confidence            444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.42  E-value=0.031  Score=62.14  Aligned_cols=135  Identities=12%  Similarity=0.041  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccC-----CchhHHHHHHHHHHHHHHHHHHHH-cCCCCC--------CCCCCccc
Q 041515          527 GPVVAMTFNFVVSVGIILTNKLVMGQVG-----FNFPIFLTVIHYAVAWILLAIFKA-FSIIPV--------SPPAITTP  592 (762)
Q Consensus       527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~g-----F~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~~--------~~~~~~~~  592 (762)
                      +.+.+++.- ++...-.++.|.++...+     .+ |..+..+.++++++++.++.. ......        .... ...
T Consensus       195 G~~~~l~s~-~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~-~~~  271 (350)
T PTZ00343        195 AFWCAMLSN-LGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT-NYT  271 (350)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-ccc
Confidence            444333333 333334445566665432     33 444666667777766654432 110000        0000 111


Q ss_pred             hhHHHHHHHHHHHHHHHHH----hhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          593 FSSLFALGVVMSFATGLAN----TSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       593 ~~~l~plgl~~~l~i~l~N----~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      +..++...++.++...+.|    .++++++...+++.-. .-|++ ++++++++||.+++..++|.+++++|+.+.+.
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~-lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANT-LKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            1122222333344445555    5999999999999874 78876 78889999999999999999999999987653

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.39  E-value=0.27  Score=59.25  Aligned_cols=40  Identities=18%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             HHHHHHhhhh-hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          382 RIKEITKNSR-KVDTDIERILKETRELQLESNSIQERLHRT  421 (762)
Q Consensus       382 RI~Eiv~nir-KQ~~eI~Kil~dtr~lqkein~~~~~l~Rt  421 (762)
                      ++...+.++. .++.++.+-..+.+.++.|+..+..++.+.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~  417 (650)
T TIGR03185       377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI  417 (650)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6777777777 467888888899999999998888888764

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.39  E-value=0.013  Score=62.91  Aligned_cols=61  Identities=11%  Similarity=0.183  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhhe
Q 041515          601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAV  662 (762)
Q Consensus       601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~l  662 (762)
                      +...+...+.+.++++.+++...++. ...|++ ++++++++||++++..+++.+++++|+++
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~-~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALR-NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeec-ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33557788889999999998888887 468876 88899999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.36  E-value=1.2  Score=45.13  Aligned_cols=173  Identities=23%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             hhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHH
Q 041515          255 TSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQA  334 (762)
Q Consensus       255 ~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~  334 (762)
                      ...+..+.++...+++.++.+.+       -=++|...+.+....+..+++--+.+ ..+.++..+|+..++.-+.+...
T Consensus        14 ~~~n~~L~~en~kL~~~ve~~ee-------~na~L~~e~~~L~~q~~s~Qqal~~a-K~l~eEledLk~~~~~lEE~~~~   85 (193)
T PF14662_consen   14 QLNNQKLADENAKLQRSVETAEE-------GNAQLAEEITDLRKQLKSLQQALQKA-KALEEELEDLKTLAKSLEEENRS   85 (193)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777777777777666       22455555555555555553222222 22344444444433333222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515          335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI  414 (762)
Q Consensus       335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~  414 (762)
                      -+.+-+.++.+.+.+..++.+-.+...+|                              ..+..+...++.+|..+.-.+
T Consensus        86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl------------------------------~~e~~~lk~~~~eL~~~~~~L  135 (193)
T PF14662_consen   86 LLAQARQLEKEQQSLVAEIETLQEENGKL------------------------------LAERDGLKKRSKELATEKATL  135 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------------------HHhhhhHHHHHHHHHHhhHHH
Confidence            22222222222222222222222222222                              233344444444444444444


Q ss_pred             HHHH---HHHHHHHHHHHHhhcCccch-HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041515          415 QERL---HRTYAVVDDMIFREAKKDQS-FEQVSEKILATDRVRREIAEYEKKLAA  465 (762)
Q Consensus       415 ~~~l---~Rtf~v~delif~~akkd~~-~~~l~~~i~~tg~~~rei~~le~qi~~  465 (762)
                      +.++   ++.+...|.++-...++-+. ...|.+--.-|-.++.||..||+|+..
T Consensus       136 q~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  136 QRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555   44555556666655555333 344444445566788899999998854

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.31  E-value=1.9  Score=50.84  Aligned_cols=216  Identities=15%  Similarity=0.158  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHH--HH--HHHhhc---hHH--HHHH---HHHHHHHHHHHHHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRS--LE--ESLYAN---ELE--AQAK---LLKLREVELERQSVL  350 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~--l~--~~~~~~---~~e--~~~k---~~~ik~~~~~~~~~~  350 (762)
                      ..-++.|+..|.++......|..|....|..|-.++-.  |+  +++.+.   +.|  ++..   -.-||.+|.++|+.+
T Consensus       408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~e  487 (961)
T KOG4673|consen  408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAE  487 (961)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence            45577888888888888888888887777777655322  22  122211   111  1111   225788999999888


Q ss_pred             HHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 041515          351 SEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQE---RLHRTYAVVDD  427 (762)
Q Consensus       351 ~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~---~l~Rtf~v~de  427 (762)
                      --..++-+++.+|..+.+++....-=+.-+.|.  ...||+|-..+..++=.|.-.+|-.+..++.   .+.++|.-..-
T Consensus       488 tl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~--~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  488 TLEEKKGELITKLQSEENKLKSILRDKEETEKL--LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            888888999999999888764422222222222  2345555555555554444444444433333   34455544332


Q ss_pred             --HHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc-cchhhhhhhHHHHHHHhhhhhhhccCCCch
Q 041515          428 --MIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS-LNVDKLQADVDVIMKENEFLEQQFHRDGRA  500 (762)
Q Consensus       428 --lif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~-~nle~i~~D~~~i~~en~~~~s~~g~~~~~  500 (762)
                        -.-.-+|.|+.-.+=-+.+...|.++...+--|-+...-..-- --.+.+.+-|++-..++..+-..-|...|.
T Consensus       566 Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrP  641 (961)
T KOG4673|consen  566 DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRP  641 (961)
T ss_pred             hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH
Confidence              2334445555432222223333333333333333332221111 223344555555555555554555555543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.31  E-value=0.069  Score=49.69  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhhhhcchhHHHHHHHhh-hHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          599 LGVVMSFATGLANTSLKHNSVGFYQMSKIA-VTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       599 lgl~~~l~i~l~N~SL~yvsVs~~qmlKsa-s~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .-+++.++..+-..+++++|++..-.+-+. .+..++++++++|||++++.+++++.++++|+++...
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344567778888889999999986655532 3445688899999999999999999999999998754

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.25  E-value=0.68  Score=61.15  Aligned_cols=82  Identities=13%  Similarity=0.222  Sum_probs=42.8

Q ss_pred             hhhhhhhhhhhHHHHHhhhh-----cCCcccccccccccCChhHHHHHHhhhhhhhcC----CCCCCCCCCh-hHHHHHH
Q 041515           35 RKTQSKMEESEVILLNSLKS-----GGVSIPADVSSIKDLTSETLVSICGQSLNLIFN----TMTFGTSLPH-SMAEKFK  104 (762)
Q Consensus        35 ~~~~~~MeE~D~ii~~sl~~-----~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p----~~~l~~~lP~-~msaRfr  104 (762)
                      +...+-+-|.=.=+|++|+.     +=|-||.+...=..++...|-. =.+|=-+...    --|+|..+|- ---+||.
T Consensus       637 ~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~-QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~  715 (1930)
T KOG0161|consen  637 RTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLN-QLRCNGVLEGIRICRQGFPNRMPFQEFRQRYE  715 (1930)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHH-HhhccCcHHHHHHHHhhCccccchHHHHHhHH
Confidence            33444555555556666544     5677787666555666665433 3444222211    1136666554 3445555


Q ss_pred             hhHHHHHHHHhcCCCC
Q 041515          105 ICTDISSAIKNLGYIG  120 (762)
Q Consensus       105 ~~~~lA~a~k~~Gy~~  120 (762)
                         -+|.....-||-+
T Consensus       716 ---lla~~~~~~~~~d  728 (1930)
T KOG0161|consen  716 ---LLAADEPKKGFSD  728 (1930)
T ss_pred             ---hhhhhhccccccc
Confidence               5566666666655

>PRK03918 chromosome segregation protein; Provisional

Probab=96.18  E-value=1  Score=56.11  Aligned_cols=9  Identities=11%  Similarity=0.054  Sum_probs=3.5

Q ss_pred             HHHHHhhhh
Q 041515           74 LVSICGQSL   82 (762)
Q Consensus        74 ~v~~~~~cl   82 (762)
                      +++|+.-||
T Consensus        39 il~ai~~~l   47 (880)
T PRK03918         39 ILEAILVGL   47 (880)
T ss_pred             HHHHHHHHh
Confidence            344443333

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.14  E-value=0.15  Score=53.55  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             chhHHHHHHHHHH-HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515          592 PFSSLFALGVVMS-FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT  666 (762)
Q Consensus       592 ~~~~l~plgl~~~-l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~  666 (762)
                      .+..+...+++.+ ....+.+.+++..+++..+++- .+.|++ +++++++++|+++...+++.+++++|+.+....
T Consensus       213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4555666676655 4788889999999999999987 578887 556999999999999999999999999876543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.11  E-value=0.061  Score=59.48  Aligned_cols=64  Identities=19%  Similarity=0.368  Sum_probs=49.6

Q ss_pred             HHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc
Q 041515          605 FATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL  668 (762)
Q Consensus       605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~  668 (762)
                      +...+..+.+++.+..+..+.-..+.|..++++.+++|++++|.-++|.+++++|+++....+.
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            3334556677777777766665434555588899999999999999999999999999987654

Some of the sequences in this family are annotated as putative membrane proteins.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.07  E-value=1.4  Score=56.68  Aligned_cols=38  Identities=29%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          392 KVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI  429 (762)
Q Consensus       392 KQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli  429 (762)
                      .=..++..+..+...++++++++...++|.=.-..++.
T Consensus       387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~  424 (1163)
T COG1196         387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLK  424 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555666677777777776666555544443

>PRK01156 chromosome segregation protein; Provisional

Probab=96.01  E-value=3  Score=52.22  Aligned_cols=87  Identities=11%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHH---HHHHhhHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESL-YANELEAQAKLLKLREVELERQSVL---SEIRKRED  358 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~-~~~~~e~~~k~~~ik~~~~~~~~~~---~e~~~k~e  358 (762)
                      .+++.+++..+.....++.+|..+=++.+..+.. +....+.+ .....+...+..++++++.+++.+.   .++..+..
T Consensus       468 ~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~  546 (895)
T PRK01156        468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD-LKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHD  546 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555544333333321 11111111 0112223334445556666655554   33444445


Q ss_pred             HHHHHHHHHhcC
Q 041515          359 EYSKLSADLEKQ  370 (762)
Q Consensus       359 ~~~~L~~~~~~~  370 (762)
                      .|..+..+++.+
T Consensus       547 ~~~~l~~~~~~~  558 (895)
T PRK01156        547 KYEEIKNRYKSL  558 (895)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555554

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.93  E-value=2.8  Score=51.49  Aligned_cols=148  Identities=19%  Similarity=0.237  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHH---------HHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515          338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYI---------ERIKEITKNSRKVDTDIERILKETRE  406 (762)
Q Consensus       338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt---------~RI~Eiv~nirKQ~~eI~Kil~dtr~  406 (762)
                      +++.++.++.++......-+++.+.|..|.+++-+.  ..+.+|-         +|.+..-...   .++..+-..+++.
T Consensus       416 k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~---~~et~el~~~ikn  492 (1195)
T KOG4643|consen  416 KHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQL---EAETEELLNQIKN  492 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            455566666666666666677777777777776442  2222222         2233222222   2334444555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhc--cc-cchhhhhhh
Q 041515          407 LQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQV----SEKILATDRVRREIAEYEKKLAAVAS--RS-LNVDKLQAD  479 (762)
Q Consensus       407 lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l----~~~i~~tg~~~rei~~le~qi~~~~~--k~-~nle~i~~D  479 (762)
                      +-+-+|.-..-+.|--+..+++.-+.-+.|...+.+    -+.=+.-|...+|=+.|-.||-....  .+ .+||+...|
T Consensus       493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~  572 (1195)
T KOG4643|consen  493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNND  572 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Confidence            666666666666666666666666655555543322    22234578999999999999999887  44 888888888


Q ss_pred             HHHHHHHhh
Q 041515          480 VDVIMKENE  488 (762)
Q Consensus       480 ~~~i~~en~  488 (762)
                      ...+-+|.+
T Consensus       573 lE~~~~elk  581 (1195)
T KOG4643|consen  573 LELIHNELK  581 (1195)
T ss_pred             HHHHHHHHH
Confidence            876665544

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.93  E-value=0.59  Score=49.23  Aligned_cols=136  Identities=15%  Similarity=0.185  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK  362 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~  362 (762)
                      -..+-+|+ .++....++.....       |..+.+..++.++............++++++.+..++..+++.-.+..+.
T Consensus         6 ~~~L~~iq-~lD~e~~rl~~~~~-------~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~   77 (239)
T COG1579           6 LKSLLAIQ-KLDLEKDRLEPRIK-------EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR   77 (239)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566 56666666665544       33333444444433333333334457788888999999999988888999


Q ss_pred             HHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          363 LSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVD  426 (762)
Q Consensus       363 L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~d  426 (762)
                      .+..+.......-.++|.+.|-....++..=+.||..+......+++++..+.+++.++-.-+-
T Consensus        78 ~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~  141 (239)
T COG1579          78 AEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA  141 (239)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888877777788889999999999999999999999999999999999999999888755443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.86  E-value=1.5  Score=53.75  Aligned_cols=92  Identities=14%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHH---HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 041515          337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRS---YIERIKEITKNSRKVDTDIERILKETRELQLES  411 (762)
Q Consensus       337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~---Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkei  411 (762)
                      .+|+...+++++-..+..+++..++.|+-+.+.+.+.  ...+.   -..-|-++...+-.++..+.++-.|...+|.++
T Consensus       794 keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el  873 (1174)
T KOG0933|consen  794 KEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL  873 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence            3566666777777788888899999999998888774  22222   234566677788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 041515          412 NSIQERLHRTYAVVDDM  428 (762)
Q Consensus       412 n~~~~~l~Rtf~v~del  428 (762)
                      |-...++.-.-+.++.+
T Consensus       874 ~~~k~k~~~~dt~i~~~  890 (1174)
T KOG0933|consen  874 KDQKAKQRDIDTEISGL  890 (1174)
T ss_pred             HHHHHHHHhhhHHHhhh
Confidence            99888876655555444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.85  E-value=2.2  Score=51.11  Aligned_cols=133  Identities=12%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-----HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515          344 LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-----YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL  418 (762)
Q Consensus       344 ~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-----Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l  418 (762)
                      .+-..+-.|+-.|+++.+.++.+++.+.+...|..     -|+=...=+.-...|+.||.   .+..+-..-.+...+++
T Consensus       277 ~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadir---c~LlEarrk~egfddk~  353 (1265)
T KOG0976|consen  277 AKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIR---CALLEARRKAEGFDDKL  353 (1265)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcchhHHH
Confidence            34445566777788888888888887766544432     22323333444555555554   34444444455555554


Q ss_pred             HHHHHHHHHHHHhhcCccch------HHHHHHHHHHh-hHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhh
Q 041515          419 HRTYAVVDDMIFREAKKDQS------FEQVSEKILAT-DRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEF  489 (762)
Q Consensus       419 ~Rtf~v~delif~~akkd~~------~~~l~~~i~~t-g~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~  489 (762)
                      +---          -|+|..      ..+..+++++- -.+.-+..+++.|||..+.+--.+|.+..|....++|-+.
T Consensus       354 ~eLE----------Kkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~  421 (1265)
T KOG0976|consen  354 NELE----------KKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQE  421 (1265)
T ss_pred             HHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHH
Confidence            4221          122332      23444444432 3556667888999998887778899999998888887653

>PF13514 AAA_27: AAA domain

Probab=95.75  E-value=3.4  Score=53.14  Aligned_cols=134  Identities=17%  Similarity=0.306  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515          333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN  412 (762)
Q Consensus       333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein  412 (762)
                      .....+++.++.++..+..++..-++....|...+..-....+-......+.+..+..+...+.+.+.-.+...++.++.
T Consensus       739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~  818 (1111)
T PF13514_consen  739 REALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELE  818 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666677777778888887787777777777653222323367788888888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 041515          413 SIQERLHRTYAVVDDMIFREAKK--DQSFEQVSEKILATDRVRREIAEYEKKLAAVA  467 (762)
Q Consensus       413 ~~~~~l~Rtf~v~delif~~akk--d~~~~~l~~~i~~tg~~~rei~~le~qi~~~~  467 (762)
                      .....+.-.-..+++++ ..+..  .+.+.++.+...+--.+..++.+++.++....
T Consensus       819 ~~~~~l~~~~~~l~~L~-~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~  874 (1111)
T PF13514_consen  819 QAEEELEELEAELAELL-EQAGVEDEEELREAEERAEERRELREELEDLERQLERQA  874 (1111)
T ss_pred             HHHHHHHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999888888887764 43333  33566777777777777888888888885443

>PRK11637 AmiB activator; Provisional

Probab=95.72  E-value=4.4  Score=46.41  Aligned_cols=27  Identities=7%  Similarity=0.049  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041515          338 KLREVELERQSVLSEIRKREDEYSKLS  364 (762)
Q Consensus       338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~  364 (762)
                      +|..++.++.....++....+.+.++.
T Consensus       104 ei~~l~~eI~~~q~~l~~~~~~l~~rl  130 (428)
T PRK11637        104 QIDELNASIAKLEQQQAAQERLLAAQL  130 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555544444433

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.65  E-value=0.11  Score=56.44  Aligned_cols=135  Identities=11%  Similarity=0.078  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc---CCC-CCCCC--CCccchhHHHHHHHHH
Q 041515          530 VAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF---SII-PVSPP--AITTPFSSLFALGVVM  603 (762)
Q Consensus       530 ~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~---~~~-~~~~~--~~~~~~~~l~plgl~~  603 (762)
                      +.++++.++......+.+.++..++.+ |.-..++..+.+.++..+....   +.. +..+.  .....+..++..+++.
T Consensus       157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~  235 (303)
T PF08449_consen  157 ILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTG  235 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence            456667777777788899999887776 7777776666666665544322   111 10000  0011234455555555


Q ss_pred             HHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          604 SFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       604 ~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .++..+-+...+..+....+++..+--+++++++.+++|+++++..|+|++++++|..+...
T Consensus       236 ~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  236 ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            55555555556666666666665444667788999999999999999999999999887654

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.56  E-value=0.096  Score=56.70  Aligned_cols=70  Identities=7%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHH----HHHHHHHHhhheeee
Q 041515          595 SLFALGVVMSFATGLANTSLK-HNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKV----LALAIVSVGVAVATV  665 (762)
Q Consensus       595 ~l~plgl~~~l~i~l~N~SL~-yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~----lsLlli~~GV~la~~  665 (762)
                      ..+..|++..+...+...+++ +++++.+.++- ...|++ ++.+++++||+.+++.+    ++.+++++|+.+.+.
T Consensus       213 ~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls-~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       213 LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLS-QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccchhhHHHHH-HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            344477777777777778889 99999999886 467887 78899999999999999    999999999887653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.55  E-value=7.4  Score=46.36  Aligned_cols=136  Identities=15%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 041515          346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR---TY  422 (762)
Q Consensus       346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R---tf  422 (762)
                      .+.+.+++..-++.+..+...+....  .+-+.-..+.-++.+.+..=+++..++......|+++......++.+   ..
T Consensus       350 ~~~lekeL~~Le~~~~~~~~~i~~~~--~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L  427 (569)
T PRK04778        350 VRQLEKQLESLEKQYDEITERIAEQE--IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL  427 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433333222  22444445555665555555555555555555555555555555544   33


Q ss_pred             HHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhh
Q 041515          423 AVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFL  490 (762)
Q Consensus       423 ~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~  490 (762)
                      .-+...+-+.. -..-....+....   .+.++|+.|..+++.   .+-|++.|...+.++..+-+.|
T Consensus       428 ~~ikr~l~k~~-lpgip~~y~~~~~---~~~~~i~~l~~~L~~---g~VNm~ai~~e~~e~~~~~~~L  488 (569)
T PRK04778        428 HEIKRYLEKSN-LPGLPEDYLEMFF---EVSDEIEALAEELEE---KPINMEAVNRLLEEATEDVETL  488 (569)
T ss_pred             HHHHHHHHHcC-CCCCcHHHHHHHH---HHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            22222222110 0112333344443   456778888888876   3466666665555555554444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.46  E-value=7.3  Score=45.73  Aligned_cols=17  Identities=24%  Similarity=0.770  Sum_probs=12.4

Q ss_pred             hcCCCCCCcccccccCC
Q 041515          115 NLGYIGDISYYKFLYPS  131 (762)
Q Consensus       115 ~~Gy~~digy~tfLY~~  131 (762)
                      ..|++.-=-||||.+..
T Consensus        44 KVGw~s~rdY~Tf~Wa~   60 (546)
T PF07888_consen   44 KVGWSSTRDYYTFVWAP   60 (546)
T ss_pred             ecCCCchhheeeEEeec
Confidence            35777667799998764

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.45  E-value=3.9  Score=47.59  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccC------hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 041515          336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVAS------RRSYIERIKEITKNSRKVDTDIERILKETRELQL  409 (762)
Q Consensus       336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~------R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqk  409 (762)
                      ..++.+++++...+..++...+..+..|++.+...|....      -+.+..++.++-..+.-......-==-+.+.+++
T Consensus       203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~  282 (498)
T TIGR03007       203 YSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR  282 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence            4567777888888888888888888888887776544321      2234455544333332222211111123456666


Q ss_pred             HHHHHHHHHH
Q 041515          410 ESNSIQERLH  419 (762)
Q Consensus       410 ein~~~~~l~  419 (762)
                      ++..+...+.
T Consensus       283 qi~~l~~~l~  292 (498)
T TIGR03007       283 EIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHH
Confidence            6666666543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.37  E-value=2.3  Score=53.06  Aligned_cols=88  Identities=14%  Similarity=0.223  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc---cChHH---HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515          339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPKV---ASRRS---YIERIKEITKNSRKVDTDIERILKETRELQLESN  412 (762)
Q Consensus       339 ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~---~~R~~---Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein  412 (762)
                      |.+++.+..++.++.-+ ++.+++|+..+.++.+.   .+|..   --+||-....+|+|+..-|.+-=.+....|+.++
T Consensus       867 ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~  945 (1293)
T KOG0996|consen  867 IEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLS  945 (1293)
T ss_pred             HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHH
Confidence            44444455544433332 55566666666665543   11111   2244444445555555555444444445555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 041515          413 SIQERLHRTYAVVDD  427 (762)
Q Consensus       413 ~~~~~l~Rtf~v~de  427 (762)
                      .+....+++--.+|+
T Consensus       946 ~le~~~~~~e~e~~~  960 (1293)
T KOG0996|consen  946 ELEREIEDTEKELDD  960 (1293)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555554444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.13  E-value=7.4  Score=47.82  Aligned_cols=166  Identities=14%  Similarity=0.221  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-----HHHHHHHHHhhhhhhHHhH-------HHHHHHHHHH
Q 041515          340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-----YIERIKEITKNSRKVDTDI-------ERILKETREL  407 (762)
Q Consensus       340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-----Yt~RI~Eiv~nirKQ~~eI-------~Kil~dtr~l  407 (762)
                      .+++.-+..+.+.++.|++.+..|..+++.+--..-|..     .+..|.++..-.--+..||       .+--.+++.|
T Consensus       318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L  397 (775)
T PF10174_consen  318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL  397 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777788888888888888888875533221211     2333333332222222222       2222233445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHH--HHHHHHHH-hhHHHHHHHHHHHHHHHHhc-cccchhhhhhhHHHH
Q 041515          408 QLESNSIQERLHRTYAVVDDMIFREAKKDQSFE--QVSEKILA-TDRVRREIAEYEKKLAAVAS-RSLNVDKLQADVDVI  483 (762)
Q Consensus       408 qkein~~~~~l~Rtf~v~delif~~akkd~~~~--~l~~~i~~-tg~~~rei~~le~qi~~~~~-k~~nle~i~~D~~~i  483 (762)
                      |+.|.++.+.|.+--.-+++.-=+-.-+-.+|.  ...+.+++ .+...|-+..|+.+.+.... +...++...+.++..
T Consensus       398 q~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~l  477 (775)
T PF10174_consen  398 QKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKEL  477 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555444433333333222221111111  11122221 12222233344444333332 226678888888888


Q ss_pred             HHHhhhhhhhccCCCchhHHHh
Q 041515          484 MKENEFLEQQFHRDGRALEEIR  505 (762)
Q Consensus       484 ~~en~~~~s~~g~~~~~~~~~~  505 (762)
                      +.+++.|+++-++..-.+++++
T Consensus       478 k~~~~~LQ~eLsEk~~~l~~~k  499 (775)
T PF10174_consen  478 KAKLESLQKELSEKELQLEDAK  499 (775)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhh
Confidence            8999999988888776666543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.01  E-value=0.46  Score=51.88  Aligned_cols=69  Identities=9%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             HHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          597 FALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       597 ~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      ..+|++ ++++.+++..|+.+.|.+..+-+-+...++.++++.+++||++++..+.+++++++|+++...
T Consensus        53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            334544 567778889999999999999888655666689999999999999999999999999887554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.84  E-value=4.9  Score=42.37  Aligned_cols=29  Identities=10%  Similarity=0.119  Sum_probs=13.9

Q ss_pred             HHhhhhhcccCcHHHHHHHHHHHHHhcCC
Q 041515          250 AVTAKTSELCDPEEEYQLLKAAAEMAFDD  278 (762)
Q Consensus       250 ~~~~~~~~~~e~e~~~~~~~~~~e~l~d~  278 (762)
                      ++..........+.++..+.+-+.++.++
T Consensus        23 ~l~~~~~~~~~aE~e~~~l~rri~~lE~~   51 (237)
T PF00261_consen   23 KLKEAEKRAEKAEAEVASLQRRIQLLEEE   51 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334445555555555555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.79  E-value=1.4  Score=54.97  Aligned_cols=80  Identities=9%  Similarity=0.150  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHH
Q 041515          379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAE  458 (762)
Q Consensus       379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~  458 (762)
                      |+.|=-..++++..-+.-+...-.+..+-+.+++.+.+.+.+.=...++          .-+.+-+...+.+.+.+....
T Consensus       512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~----------~~k~l~~~~~e~~~~~~~~~~  581 (1293)
T KOG0996|consen  512 LLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKE----------KEKELPKLRKEERNLKSQLNK  581 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHhHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666666666666666666666666654333332          223344444455555555555


Q ss_pred             HHHHHHHHhc
Q 041515          459 YEKKLAAVAS  468 (762)
Q Consensus       459 le~qi~~~~~  468 (762)
                      +-.++++.++
T Consensus       582 ~rqrveE~ks  591 (1293)
T KOG0996|consen  582 LRQRVEEAKS  591 (1293)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.72  E-value=6.3  Score=46.25  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=37.6

Q ss_pred             HHHHhhhhhcccCcHHHHHHHHH-------------------HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 041515          248 MEAVTAKTSELCDPEEEYQLLKA-------------------AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWD  308 (762)
Q Consensus       248 ~~~~~~~~~~~~e~e~~~~~~~~-------------------~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe  308 (762)
                      +++|-..+.|+..++-.+...+.                   +-.++.+    ...-.++++..+......+.+|...|+
T Consensus        55 IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e----~~~~ra~~e~ei~kl~~e~~elr~~~~  130 (546)
T KOG0977|consen   55 IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDE----TARERAKLEIEITKLREELKELRKKLE  130 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            56666666666666666666663                   1222333    455666777777777777777777777


Q ss_pred             Hh
Q 041515          309 AL  310 (762)
Q Consensus       309 ~~  310 (762)
                      +.
T Consensus       131 ~~  132 (546)
T KOG0977|consen  131 KA  132 (546)
T ss_pred             HH
Confidence            65

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.61  E-value=8.4  Score=47.35  Aligned_cols=217  Identities=21%  Similarity=0.274  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH-----------------HhhchHHHHHHHHHHHHHHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES-----------------LYANELEAQAKLLKLREVELE  345 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~-----------------~~~~~~e~~~k~~~ik~~~~~  345 (762)
                      -.-++.|+..+.+..++-..|...-|..|..|.++...+..+                 +....+....+-.+|..++.+
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666666666665554444332                 111112222223355666677


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHH-----HHHHH---HHhhhhhh--------HHhHHHHHHHHHHHHH
Q 041515          346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYI-----ERIKE---ITKNSRKV--------DTDIERILKETRELQL  409 (762)
Q Consensus       346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt-----~RI~E---iv~nirKQ--------~~eI~Kil~dtr~lqk  409 (762)
                      +..+.+.++.|+.....++..+..-|. .++.-+.     .=+.|   +++.++.|        .+++.+--.+.+.+.-
T Consensus       401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d-~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~  479 (775)
T PF10174_consen  401 IENLEEQLREKDRQLDEEKERLSSQAD-SSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA  479 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888887433 3333222     11111   12222222        4666777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HhhcCccch--------------HHHHH---HHHHHhhHHHHHHHHHHHHHHH
Q 041515          410 ESNSIQERLHRTYAVVDDMI-------FREAKKDQS--------------FEQVS---EKILATDRVRREIAEYEKKLAA  465 (762)
Q Consensus       410 ein~~~~~l~Rtf~v~deli-------f~~akkd~~--------------~~~l~---~~i~~tg~~~rei~~le~qi~~  465 (762)
                      ++++++..|+..=+-+++.=       =.--|+|..              |..+.   +..+....+..+|+.||..+..
T Consensus       480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~  559 (775)
T PF10174_consen  480 KLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTR  559 (775)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHH
Confidence            77777777766655554321       000111111              22222   2233345666778888886644


Q ss_pred             Hh---ccc-cchhhhhhhHHHHHHHhhhhhhhccCCCch
Q 041515          466 VA---SRS-LNVDKLQADVDVIMKENEFLEQQFHRDGRA  500 (762)
Q Consensus       466 ~~---~k~-~nle~i~~D~~~i~~en~~~~s~~g~~~~~  500 (762)
                      -.   ++. .-+|++.+-++.+.+|+...+...|+-...
T Consensus       560 ~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke  598 (775)
T PF10174_consen  560 YREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE  598 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            32   233 669999999999999998776666653333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=8.1  Score=46.79  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 041515          329 ELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ-PKVASRRSYIERIKEITKNSRKVDTDIERILKETREL  407 (762)
Q Consensus       329 ~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~-~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~l  407 (762)
                      ..|-.+-+.+.+++..+...+..++.+|++..++.++.-+.. .+..+-..--++=..++.-.++|.++=.+-.+--.++
T Consensus       736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~  815 (970)
T KOG0946|consen  736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL  815 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            344444555667777777777788888888888877666522 1112222233444455555555666655555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041515          408 QLESNSIQERLHRTYAVVDDM  428 (762)
Q Consensus       408 qkein~~~~~l~Rtf~v~del  428 (762)
                      ++--+..+..++||=++.|++
T Consensus       816 ~~~keq~~t~~~~tsa~a~~l  836 (970)
T KOG0946|consen  816 TQLKEQIQTLLERTSAAADSL  836 (970)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh
Confidence            556666677888998888875

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.51  E-value=3.9  Score=47.92  Aligned_cols=87  Identities=14%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515          388 KNSRKVDTDIERILKETRELQLESNSIQERLH----RTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKL  463 (762)
Q Consensus       388 ~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~----Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi  463 (762)
                      ..+..+..|-++.+...+.++.+.......+.    .+=+-..+...+          .-..-.+...++.++|.+++++
T Consensus       230 ~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~----------~~~~~~e~e~LkeqLr~~qe~l  299 (546)
T PF07888_consen  230 KTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQ----------AQQLQQENEALKEQLRSAQEQL  299 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHHHHH
Confidence            34444446666667777777666666554433    221111111111          1122244456777788888887


Q ss_pred             HHHhccccchhhhhhhHHHHH
Q 041515          464 AAVASRSLNVDKLQADVDVIM  484 (762)
Q Consensus       464 ~~~~~k~~nle~i~~D~~~i~  484 (762)
                      .+-.++..-|.+=..|...++
T Consensus       300 qaSqq~~~~L~~EL~~~~~~R  320 (546)
T PF07888_consen  300 QASQQEAELLRKELSDAVNVR  320 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            766554433333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.41  E-value=2.1  Score=50.87  Aligned_cols=148  Identities=13%  Similarity=0.242  Sum_probs=108.2

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH---HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESL---EEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED  358 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl---~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e  358 (762)
                      -.+...+++..+.....+...+...++.+..|=   .++++++.+.+..-+.+...-.+.++.++.+-+.+.+.+..-..
T Consensus       342 e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~  421 (560)
T PF06160_consen  342 ELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ  421 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788999999999999999999888888764   55566666655554444343444566666666555555555555


Q ss_pred             HHHHHHHHHhcC--CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515          359 EYSKLSADLEKQ--PKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFR  431 (762)
Q Consensus       359 ~~~~L~~~~~~~--~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~  431 (762)
                      .....+..+++.  |+-+  ..|...+......|.+=.++++++--|...+++.++..++.+++.+.-|+++|-.
T Consensus       422 ~l~~ikR~lek~nLPGlp--~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~  494 (560)
T PF06160_consen  422 KLREIKRRLEKSNLPGLP--EDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDN  494 (560)
T ss_pred             HHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555544  5522  5688899999999999999999999999999999999999999999888888753

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.38  E-value=14  Score=43.41  Aligned_cols=44  Identities=23%  Similarity=0.303  Sum_probs=41.4

Q ss_pred             HHhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515          103 FKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL  146 (762)
Q Consensus       103 fr~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL  146 (762)
                      =.++..|-+++.+-||.+.+|-+-.--|+.+|.-.+|=||-.+|
T Consensus        73 s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~L  116 (581)
T KOG0995|consen   73 SQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFL  116 (581)
T ss_pred             HHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhcc
Confidence            34678899999999999999999999999999999999999999

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.35  E-value=3.9  Score=50.91  Aligned_cols=69  Identities=12%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Q 041515          378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKI  446 (762)
Q Consensus       378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i  446 (762)
                      .-++=|-+++.+|+--++.+.||.++|....+-.++.+.++..-.++++++-.+-++-+..++++-+.+
T Consensus      1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a 1649 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTA 1649 (1758)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            346778999999999999999999999999999999999999999999999999999998776664443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.32  E-value=8  Score=42.09  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          377 RSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR  420 (762)
Q Consensus       377 ~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R  420 (762)
                      ..|..++-++-....+........-.|.+.+++.++++...++.
T Consensus       191 ~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~  234 (312)
T PF00038_consen  191 EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES  234 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc
Confidence            56888999998888888888888888888888888888888776

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.21  E-value=4.7  Score=48.16  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.7

Q ss_pred             cccccccCChHHHHHHHHHHHHHh
Q 041515          123 SYYKFLYPSEEDLYKLIRFLVERL  146 (762)
Q Consensus       123 gy~tfLY~~~~dlr~l~~fLiekL  146 (762)
                      |+...|-|+...-.++.+-|.+.+
T Consensus        52 ~l~~~lP~~msaRfr~~~~lA~~~   75 (594)
T PF05667_consen   52 SLPRSLPPGMSARFRVGTSLAQAC   75 (594)
T ss_pred             CCcccCChHHHHHHHHHHHHHHHH
Confidence            778888888899999999999988

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.10  E-value=6.8  Score=49.35  Aligned_cols=74  Identities=26%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             HHhhhhcCCc---c-ccccc-------ccccCChhHHH--HHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHh
Q 041515           49 LNSLKSGGVS---I-PADVS-------SIKDLTSETLV--SICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKN  115 (762)
Q Consensus        49 ~~sl~~~g~~---~-~~~~~-------sl~~ftte~~v--~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~  115 (762)
                      |+++|++|..   | ||+|=       -|.+|-+=+=.  ++.|+|    +-..|-|.++.|-.             ++.
T Consensus       188 ldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s----~~aVGTPDYISPEv-------------Lqs  250 (1317)
T KOG0612|consen  188 LDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRS----SVAVGTPDYISPEV-------------LQS  250 (1317)
T ss_pred             HHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEe----ccccCCCCccCHHH-------------HHh
Confidence            6778887764   3 44431       26667553311  233333    22346888877743             233


Q ss_pred             c-CCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515          116 L-GYIGDISYYKFLYPSEEDLYKLIRFLVERL  146 (762)
Q Consensus       116 ~-Gy~~digy~tfLY~~~~dlr~l~~fLiekL  146 (762)
                      . |++|       -||-+-|.=++=+|+-|-|
T Consensus       251 ~~~~~g-------~yG~ecDwWSlGV~~YEMl  275 (1317)
T KOG0612|consen  251 QGDGKG-------EYGRECDWWSLGVFMYEML  275 (1317)
T ss_pred             hcCCcc-------ccCCccchhhhHHHHHHHH
Confidence            3 2223       2888888888888888888

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.00  E-value=7.5  Score=47.05  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH---HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK---KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED  358 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~---~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e  358 (762)
                      ....+++|+..+.....+..++.++|..++..+.+-   +++++++......+   ..++.++++.+++++..++...++
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~---~~~~r~~Le~ei~~le~e~~e~~~  283 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD---LFEEREQLERQLKEIEAARKANRA  283 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788888888888888888888888887776444   44444433322111   122233444455555554444444


Q ss_pred             HHHH
Q 041515          359 EYSK  362 (762)
Q Consensus       359 ~~~~  362 (762)
                      ...+
T Consensus       284 ~l~~  287 (650)
T TIGR03185       284 QLRE  287 (650)
T ss_pred             HHHH
Confidence            3333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.92  E-value=16  Score=44.05  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR  420 (762)
Q Consensus       381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R  420 (762)
                      -|+-|+...-.+++++|.+.=.--++||-|+..+++|++-
T Consensus       416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qq  455 (1118)
T KOG1029|consen  416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQ  455 (1118)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999999999888888899999888888764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=93.89  E-value=0.35  Score=43.49  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhhhhcchhHHH-HHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHH
Q 041515          601 VVMSFATGLANTSLKHNSVGFY-QMSKIAVTPTIVLAEFILFSKTISYKKVLALAIV  656 (762)
Q Consensus       601 l~~~l~i~l~N~SL~yvsVs~~-qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli  656 (762)
                      ++++++..+-..+++++|++.. .+........+++++.++|||++|+.+++++.++
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3677888899999999999985 5454334445688899999999999999998875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.80  E-value=8.5  Score=46.89  Aligned_cols=90  Identities=18%  Similarity=0.334  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhh----HHhHHHHHHHHHHHHHHHHH
Q 041515          338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKV----DTDIERILKETRELQLESNS  413 (762)
Q Consensus       338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ----~~eI~Kil~dtr~lqkein~  413 (762)
                      +.++++.+++.+..|++.|||....|+.+..                    .+|++    ..|++-.+.....+|..-..
T Consensus       546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~--------------------~lr~~~~e~~~~~e~L~~aL~amqdk~~~  605 (697)
T PF09726_consen  546 RRRQLESELKKLRRELKQKEEQIRELESELQ--------------------ELRKYEKESEKDTEVLMSALSAMQDKNQH  605 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            5577777888888888888888888877772                    22232    23444444444444444333


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 041515          414 IQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLA  464 (762)
Q Consensus       414 ~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~  464 (762)
                      +...|.      .          |+ .-=.+.....|..+|++..++.+|-
T Consensus       606 LE~sLs------a----------Et-riKldLfsaLg~akrq~ei~~~~~~  639 (697)
T PF09726_consen  606 LENSLS------A----------ET-RIKLDLFSALGDAKRQLEIAQGQLR  639 (697)
T ss_pred             HHHhhh------H----------HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333221      0          00 0014566778999999999888876

; GO: 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=93.78  E-value=5.8  Score=44.26  Aligned_cols=97  Identities=20%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHH-HHHHHHHHHhcccc-------cHHHHHHHHHHHHhhheeee
Q 041515          594 SSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTP-TIVLAEFILFSKTI-------SYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       594 ~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P-~~vll~~l~lgek~-------s~~~~lsLlli~~GV~la~~  665 (762)
                      ..-+..|++.+++..+...|++|+.+|...-+-.-..- +.+++..+++||-.       .....++++++++|+++.+.
T Consensus        74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            34455677777788888889999888876655432222 23566667777422       24467899999999999888


Q ss_pred             ----cCc--------cc-cHHHHHHHHHHHHHHHHHHH
Q 041515          666 ----TDL--------EF-NIFGAIIAVAWIIPSAINKI  690 (762)
Q Consensus       666 ----~d~--------~f-s~~G~ilalls~l~~Al~~V  690 (762)
                          .|.        ++ ...|+++++++.+.++.|..
T Consensus       154 Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        154 AGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             hhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence                443        13 36799999999999999994

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=93.61  E-value=2.8  Score=40.58  Aligned_cols=115  Identities=19%  Similarity=0.285  Sum_probs=75.3

Q ss_pred             HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 041515          544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSII-PVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFY  622 (762)
Q Consensus       544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~-~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~  622 (762)
                      .+|-.+-...+  .|+.-+++-+.++++++.++...... ..... ++.||..++ -|++-+..+.+.+++...+.++..
T Consensus        18 ~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~-~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~   93 (138)
T PF04657_consen   18 AFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASL-SSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALT   93 (138)
T ss_pred             HHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchh-ccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHH
Confidence            34554444322  48888888888888887665432222 22222 334554333 566666777888888888888887


Q ss_pred             HHHHhhhHHHH-HHHHHH-Hhc---ccccHHHHHHHHHHHHhhhe
Q 041515          623 QMSKIAVTPTI-VLAEFI-LFS---KTISYKKVLALAIVSVGVAV  662 (762)
Q Consensus       623 qmlKsas~P~~-vll~~l-~lg---ek~s~~~~lsLlli~~GV~l  662 (762)
                      +++--+.--+. ++++.+ +++   .++++.++++++++++|+.+
T Consensus        94 ~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   94 TILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            77764333333 677766 454   78999999999999999874

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.58  E-value=0.62  Score=51.69  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCchhHHHHHHHHHH---HHHHHHHHHHcCCCCCCCCCCccchhHHHHH
Q 041515          525 ICGPVVAMTFNFVVSVGIILTNKLVMGQV--GFNFPIFLTVIHYAV---AWILLAIFKAFSIIPVSPPAITTPFSSLFAL  599 (762)
Q Consensus       525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~--gF~~Pl~Lt~~q~l~---a~ill~i~~~~~~~~~~~~~~~~~~~~l~pl  599 (762)
                      .+|.+.+.+.-..-++=++++ |.-..+.  +..-|+++.++..+-   .|-.+.++..++ .+..+++....+.-++..
T Consensus       246 llG~llaL~sA~~YavY~vll-k~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~-~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLL-KRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG-EERFELPSSTQFSLVVFN  323 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcccCCCCceeEeeeHh
Confidence            345544433332233333344 4444544  455566666555433   232233444453 333333344445555555


Q ss_pred             HHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccc
Q 041515          600 GVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEF  670 (762)
Q Consensus       600 gl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~f  670 (762)
                      +++ ..++=.++-+|.-..+.-..++.-+.++|..++++.++-|+.+|+.-++|.+++++|.+++.+.+...
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS  395 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence            554 44666777778777777777777777899999999888899999999999999999999998866543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=93.53  E-value=3  Score=49.60  Aligned_cols=32  Identities=13%  Similarity=0.078  Sum_probs=21.6

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALKES  313 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~p  313 (762)
                      -...+.+++..++...+++..+...+.....+
T Consensus       346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~  377 (569)
T PRK04778        346 ELESVRQLEKQLESLEKQYDEITERIAEQEIA  377 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            35556677777777777777777777666666

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.51  E-value=10  Score=40.15  Aligned_cols=43  Identities=19%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 041515          393 VDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKK  435 (762)
Q Consensus       393 Q~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akk  435 (762)
                      =++++.+|=++...+..+...+..+++.-+--.+|.+-+..|-
T Consensus       147 ~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg  189 (239)
T COG1579         147 LEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKG  189 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Confidence            3455566666667778899999999999999999999888754

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.48  E-value=7  Score=50.70  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          287 EQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIR  354 (762)
Q Consensus       287 ~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~  354 (762)
                      ++.+....+..+.+..+.++-+.++....+++.+++....+.-...=..-..|+.++.+++.+..+|+
T Consensus       721 ~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~  788 (1201)
T PF12128_consen  721 AQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELK  788 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34455555555666666666666666666666666655442110000012245666666666666665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.41  E-value=14  Score=40.20  Aligned_cols=79  Identities=20%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhh---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALK---ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDE  359 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r---~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~  359 (762)
                      -..-++|+..++.....+.++..+|+...   ..+..+...++..+.   .++.    ..-.++.+++.+.+|+.-....
T Consensus        67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld---~~~~----~r~~le~~i~~L~eEl~fl~~~  139 (312)
T PF00038_consen   67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD---EETL----ARVDLENQIQSLKEELEFLKQN  139 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hhhh----hHhHHHHHHHHHHHHHHHHHhh
Confidence            33445666666666666667766666542   233333444443322   1111    1234566777788888777777


Q ss_pred             HHHHHHHHh
Q 041515          360 YSKLSADLE  368 (762)
Q Consensus       360 ~~~L~~~~~  368 (762)
                      |.+=..++.
T Consensus       140 heeEi~~L~  148 (312)
T PF00038_consen  140 HEEEIEELR  148 (312)
T ss_dssp             HHHHHHTTS
T ss_pred             hhhhhhhhh
Confidence            766433333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.36  E-value=11  Score=46.06  Aligned_cols=95  Identities=28%  Similarity=0.327  Sum_probs=54.2

Q ss_pred             HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 041515          271 AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVL  350 (762)
Q Consensus       271 ~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~  350 (762)
                      ++||+-=|.--+|+-.+-||-.++.+++|+.+|.-.-|-.|.++.++       =.+-..-+..++.+|+.--.++|+..
T Consensus       312 ~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek-------G~~~~~~ss~qfkqlEqqN~rLKdal  384 (1243)
T KOG0971|consen  312 AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK-------GSDGQAASSYQFKQLEQQNARLKDAL  384 (1243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcccchHHHHHHHHHHHHHHHHH
Confidence            45554333333577777888888888888888877776666666555       00011112223444444444555555


Q ss_pred             HHHHh----hHHHHHHHHHHHhcCCC
Q 041515          351 SEIRK----REDEYSKLSADLEKQPK  372 (762)
Q Consensus       351 ~e~~~----k~e~~~~L~~~~~~~~k  372 (762)
                      -.+|+    .++.+.++.+++|+...
T Consensus       385 VrLRDlsA~ek~d~qK~~kelE~k~s  410 (1243)
T KOG0971|consen  385 VRLRDLSASEKQDHQKLQKELEKKNS  410 (1243)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhh
Confidence            55443    35667777777775433

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.26  E-value=19  Score=41.26  Aligned_cols=43  Identities=23%  Similarity=0.272  Sum_probs=40.4

Q ss_pred             HhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515          104 KICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL  146 (762)
Q Consensus       104 r~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL  146 (762)
                      .+.+.|-.++++-||-+.||-...--|+..+.-.+|=||--+|
T Consensus       108 ~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~l  150 (622)
T COG5185         108 ACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRL  150 (622)
T ss_pred             HHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhcc
Confidence            4678899999999999999998888899999999999999999

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.24  E-value=19  Score=41.14  Aligned_cols=135  Identities=13%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-----------CCc---cChHH-HHHHHHHHHhhhhhhHHhHHHHH
Q 041515          337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQ-----------PKV---ASRRS-YIERIKEITKNSRKVDTDIERIL  401 (762)
Q Consensus       337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~-----------~k~---~~R~~-Yt~RI~Eiv~nirKQ~~eI~Kil  401 (762)
                      .+|..+...++.+..+-+.....+.++..-+.++           |++   ..|.. |.+   .++.-.+.|-+.+.+.+
T Consensus        94 ~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~---~l~~~~~~~i~~l~~~~  170 (420)
T COG4942          94 KQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYG---ALNPARAERIDALKATL  170 (420)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence            3555555555555444433333333333333333           333   24544 554   34556677777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc-cchhhhhhhH
Q 041515          402 KETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS-LNVDKLQADV  480 (762)
Q Consensus       402 ~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~-~nle~i~~D~  480 (762)
                      .+.+.++.+|...+.++..+-+.-.+                 ..........|-..++.|++.+.+.. ..++.+.++=
T Consensus       171 ~~l~~~~~~iaaeq~~l~~~~~eq~~-----------------q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~  233 (420)
T COG4942         171 KQLAAVRAEIAAEQAELTTLLSEQRA-----------------QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANE  233 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            88888888888888887766554433                 23333344444444444554444443 4455555555


Q ss_pred             HHHHHHhhhhh
Q 041515          481 DVIMKENEFLE  491 (762)
Q Consensus       481 ~~i~~en~~~~  491 (762)
                      ..++++.+.++
T Consensus       234 ~~L~~~Ias~e  244 (420)
T COG4942         234 SRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHH
Confidence            55555555333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.23  E-value=14  Score=43.57  Aligned_cols=40  Identities=15%  Similarity=0.339  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515          378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER  417 (762)
Q Consensus       378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~  417 (762)
                      .|-.+|-+|=+....+-..+++.-++.+.+...++.+.++
T Consensus       272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~k  311 (546)
T KOG0977|consen  272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAK  311 (546)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhh
Confidence            3555555554433333333333334444444333333333

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=92.84  E-value=2.4  Score=45.78  Aligned_cols=129  Identities=11%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCCC-CCCCCccchhHHHHHHHHHHHHHHH
Q 041515          532 MTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIPV-SPPAITTPFSSLFALGVVMSFATGL  609 (762)
Q Consensus       532 i~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~~-~~~~~~~~~~~l~plgl~~~l~i~l  609 (762)
                      +.+...+|.+....-|-.+.   .+ +.+=.+++++.-...+.++. ...-.+. ........+.-+...|++.++...+
T Consensus       152 val~la~sf~~Ygl~RK~~~---v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~l  227 (293)
T COG2962         152 VALALALSFGLYGLLRKKLK---VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLL  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcC---Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHH
Confidence            33344444444444443332   23 44555556555554443331 1111110 0001223455566788888899999


Q ss_pred             HHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          610 ANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       610 ~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      ...|-+.+|.|+..++. +..|.. .+++.+++||.++..++.+-+.+-+|+++++.
T Consensus       228 f~~aa~~lpls~~G~lq-Yi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         228 FAAAAKRLPLSTLGFLQ-YIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999997 899987 56678888899999999988888888777654

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.70  E-value=26  Score=41.39  Aligned_cols=130  Identities=22%  Similarity=0.268  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 041515          284 FYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKL  363 (762)
Q Consensus       284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L  363 (762)
                      .....|+..++.+...+..|..+|+.++.--.+...+.+.    ....   .-..+..+..++.++..+|....+....|
T Consensus       235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~----~~~~---~~~~l~s~~~ELe~ak~~L~~~k~E~~~L  307 (522)
T PF05701_consen  235 EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKE----KSSE---LQSSLASAKKELEEAKKELEKAKEEASSL  307 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh----hhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666667777777777776622111110110    0011   11235556666666666666666666666


Q ss_pred             HHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 041515          364 SADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKD  436 (762)
Q Consensus       364 ~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd  436 (762)
                      ....+.+                -.-+.+.|.++.+....-......+.++.+.++++=.-++-.-=.+.+..
T Consensus       308 ~~~vesL----------------~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k  364 (522)
T PF05701_consen  308 RASVESL----------------RSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK  364 (522)
T ss_pred             HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh
Confidence            6665533                33567788888888888888888888888888887766655544444443

Several sequences in this family are described as being myosin heavy chain-like.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.63  E-value=1.9  Score=52.62  Aligned_cols=75  Identities=13%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHH---HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515          337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYI---ERIKEITKNSRKVDTDIERILKETRELQLESN  412 (762)
Q Consensus       337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt---~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein  412 (762)
                      ++++.++.+++.+...++.-....++.+...++.. +..++.|.   .-...|-..+++|-++|....++++.+.+.+|
T Consensus       639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~-~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~  716 (717)
T PF10168_consen  639 KELERMKDQLQDLKASIEQLKKKLDYQQRQIESQK-SPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVN  716 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            35555565555555554443333333333344221 12223222   22234445567888888888888888888765

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=92.63  E-value=18  Score=43.08  Aligned_cols=126  Identities=14%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             hHHHHHHHH--HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 041515          283 EFYLEQLDE--QVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEY  360 (762)
Q Consensus       283 ~~n~~kL~~--~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~  360 (762)
                      ..-+.|++.  +..++..+...+.++|++.-.....+..++=..   -+.... + -+....++.++.+.+.+..-++..
T Consensus        43 ~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~---ae~~~~-~-~rf~ka~~~i~~~~~~l~~~e~~i  117 (560)
T PF06160_consen   43 ADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFE---AEEYAD-K-YRFKKAKQAIKEIEEQLDEIEEDI  117 (560)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHh-c-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443  677888899999999988775544443222211   100000 1 134455556666666666666666


Q ss_pred             HHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          361 SKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI  429 (762)
Q Consensus       361 ~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli  429 (762)
                      ..+..+++                ++++.=++++.+|..+...=++++|++........-++..+++.+
T Consensus       118 ~~i~~~l~----------------~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L  170 (560)
T PF06160_consen  118 KEILDELD----------------ELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQL  170 (560)
T ss_pred             HHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHH
Confidence            66655544                677777888888888888888888888877777666666666554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=92.58  E-value=15  Score=45.67  Aligned_cols=129  Identities=11%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc-cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515          339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPKV-ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER  417 (762)
Q Consensus       339 ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~-~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~  417 (762)
                      ||.+...+..-+.|+-.....+.+|+..|..+.-. .--+---.++-+.++|.++-          .+.|+|+|..+...
T Consensus       490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E----------Na~LlkqI~~Lk~t  559 (1195)
T KOG4643|consen  490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE----------NAHLLKQIQSLKTT  559 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHH
Confidence            44444444444444444444444444444432211 00000123555666666654          44566666666553


Q ss_pred             HHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhccc-----cchhhhhhhHH
Q 041515          418 LHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKL-AAVASRS-----LNVDKLQADVD  481 (762)
Q Consensus       418 l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi-~~~~~k~-----~nle~i~~D~~  481 (762)
                       .-.=+..|..+-.   +|..-.++-+.|..-..++|+..+||.+| ++...-.     .+.+.|..+..
T Consensus       560 -~qn~~~LEq~~n~---lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~  625 (1195)
T KOG4643|consen  560 -SQNGALLEQNNND---LELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKES  625 (1195)
T ss_pred             -hHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHH
Confidence             2222222222221   12222334445555558999999999998 4333311     66777877743

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.55  E-value=9.2  Score=42.12  Aligned_cols=108  Identities=18%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             HHHHHHhhHHHHHHHH-HHHHHHhhchHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHH
Q 041515          304 ELQWDALKESLEEKKR-SLEESLYANELE---AQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSY  379 (762)
Q Consensus       304 ~~qWe~~r~pl~~~~~-~l~~~~~~~~~e---~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Y  379 (762)
                      ++.|=+-|.-+.+... .|.+.+..-..+   -..++..+.++..++++--..++.+-...+++..++++-+     +.+
T Consensus       131 k~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d-----~~e  205 (312)
T smart00787      131 KKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD-----PTE  205 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-----HHH
Confidence            4568777777765522 222211111111   1112333444444455555555555555555555555544     456


Q ss_pred             HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          380 IERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH  419 (762)
Q Consensus       380 t~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~  419 (762)
                      .+++.   .-|++++.+|.....+..++|.+.+.+.++++
T Consensus       206 L~~lk---~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~  242 (312)
T smart00787      206 LDRAK---EKLKKLLQEIMIKVKKLEELEEELQELESKIE  242 (312)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666   67888999999999999999999999998887

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.54  E-value=23  Score=40.45  Aligned_cols=31  Identities=6%  Similarity=0.126  Sum_probs=19.7

Q ss_pred             HHHHHHHHHhhhhhcccCcHHHHHHHHHHHH
Q 041515          243 RDESLMEAVTAKTSELCDPEEEYQLLKAAAE  273 (762)
Q Consensus       243 ~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e  273 (762)
                      ..+.+.+++.+.+.++.+.|++++..++-..
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~  202 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQEKG  202 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3445556666666677777777777665433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.46  E-value=3  Score=43.19  Aligned_cols=100  Identities=19%  Similarity=0.379  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhhhhhhH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhh-HH
Q 041515          378 SYIERIKEITKNSRKVD----TDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATD-RV  452 (762)
Q Consensus       378 ~Yt~RI~Eiv~nirKQ~----~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg-~~  452 (762)
                      .|-+.|-++++--.+++    .+|.+++.|..++..++|++    +++|+       ---++++-++++++....+. ++
T Consensus        48 e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~----E~sfs-------dl~~ryek~K~vi~~~k~NEE~L  116 (207)
T PF05010_consen   48 EYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSL----EKSFS-------DLHKRYEKQKEVIEGYKKNEETL  116 (207)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHH----HhhHH-------HHHHHHHHHHHHHHHHHHhHHHH
Confidence            47788888887776664    46999999999999999875    45555       12245666888888886665 66


Q ss_pred             HHHHHHHHHHHHHHhccc--------cchhhhhhhHHHHHHHhh
Q 041515          453 RREIAEYEKKLAAVASRS--------LNVDKLQADVDVIMKENE  488 (762)
Q Consensus       453 ~rei~~le~qi~~~~~k~--------~nle~i~~D~~~i~~en~  488 (762)
                      +..+.|+++.+..+.++.        ..|++-+..+..++....
T Consensus       117 kk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~  160 (207)
T PF05010_consen  117 KKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ  160 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            778889999999888865        456677777776666554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.46  E-value=8.8  Score=43.64  Aligned_cols=124  Identities=18%  Similarity=0.264  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515          338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER  417 (762)
Q Consensus       338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~  417 (762)
                      +++.++.++.+...+++...+...+|+++++++.+         .|-.|...++.=..|+.++-.++..+-+.+|.+.++
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~---------~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLET---------EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666654433         344455555555566666666666666666666665


Q ss_pred             HH---HHHHHHHHHHHhhcCccch----------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc
Q 041515          418 LH---RTYAVVDDMIFREAKKDQS----------------------FEQVSEKILATDRVRREIAEYEKKLAAVASRS  470 (762)
Q Consensus       418 l~---Rtf~v~delif~~akkd~~----------------------~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~  470 (762)
                      -.   +..+.+-.-+|+..++.+-                      -..+.+.+........++.+.+..|+.+..+.
T Consensus       110 ~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l  187 (420)
T COG4942         110 EREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAEL  187 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            52   2334444555665444330                      23456777777777777777777777766643

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=92.44  E-value=18  Score=38.81  Aligned_cols=162  Identities=12%  Similarity=0.153  Sum_probs=86.7

Q ss_pred             ccCcHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHH
Q 041515          258 LCDPEEEYQLLKAAAEMAFDD-SHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKL  336 (762)
Q Consensus       258 ~~e~e~~~~~~~~~~e~l~d~-~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~  336 (762)
                      +.++=+++.....++..+.-. .+.-+..-+.|++.-+..+.++..|.+|-+...+.+.+...++.--..=...|+..|.
T Consensus        40 Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~  119 (258)
T PF15397_consen   40 VRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA  119 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            444555555666666655541 1112444456666666666677777777777776666665555554444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhcCCC-------ccCh-------HHHHH-------HHHHHHhhhhhhH
Q 041515          337 LKLREVELERQSVLSEIRKR-EDEYSKLSADLEKQPK-------VASR-------RSYIE-------RIKEITKNSRKVD  394 (762)
Q Consensus       337 ~~ik~~~~~~~~~~~e~~~k-~e~~~~L~~~~~~~~k-------~~~R-------~~Yt~-------RI~Eiv~nirKQ~  394 (762)
                      -+|..+...++.+..+-+.- +++.+-.+.+++++..       .+.+       +.|..       --.-+-+-|.+++
T Consensus       120 vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r  199 (258)
T PF15397_consen  120 VQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR  199 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554443333221 1111111111111100       0111       11222       2234667778888


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          395 TDIERILKETRELQLESNSIQERLH  419 (762)
Q Consensus       395 ~eI~Kil~dtr~lqkein~~~~~l~  419 (762)
                      ++|.-.-.++..|+.|+..+.....
T Consensus       200 e~i~el~e~I~~L~~eV~~L~~~~~  224 (258)
T PF15397_consen  200 EEIDELEEEIPQLRAEVEQLQAQAQ  224 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8888888888888888888877766

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=92.42  E-value=0.31  Score=45.55  Aligned_cols=70  Identities=16%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhh-HHHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515          593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAV-TPTIVLAEFILFSKTISYKKVLALAIVSVGVAVA  663 (762)
Q Consensus       593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas-~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la  663 (762)
                      ++.++|+.+=.++++.+ .+.|...++|...-+-++. ..++++.++++.++..++..+++++++++|+++.
T Consensus        42 ~~y~ipf~lNq~GSv~f-~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLF-FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            44567777655555554 6778888888877776433 3345777766666778999999999999999875

Many members are annotated as potential transmembrane proteins.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.42  E-value=3.2  Score=47.04  Aligned_cols=83  Identities=19%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHH-HHHHhhHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELEL-QWDALKESLEEKKRSLEE---SLYANELEAQAKLLKLREVELERQSVLSEIRKRED  358 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~-qWe~~r~pl~~~~~~l~~---~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e  358 (762)
                      .-+-.||+....--++.+.++.+ |||.+|.-+.+...+.++   +.++-+.+.+.--.+++++..+++....|+..-.|
T Consensus       324 ~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E  403 (493)
T KOG0804|consen  324 PLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE  403 (493)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556788777777788888888 999999887666555444   44433333332233455555666666666665555


Q ss_pred             HHHHHHH
Q 041515          359 EYSKLSA  365 (762)
Q Consensus       359 ~~~~L~~  365 (762)
                      +-+.|.+
T Consensus       404 ~n~~l~k  410 (493)
T KOG0804|consen  404 ENKKLIK  410 (493)
T ss_pred             HHHHHHh
Confidence            5555543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.36  E-value=26  Score=46.64  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515          374 ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL  418 (762)
Q Consensus       374 ~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l  418 (762)
                      .-|..|..||.++.-++.+++.+...-.+|.|+++.+.+..-.-.
T Consensus       798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~  842 (1822)
T KOG4674|consen  798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENA  842 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            557779999999999999999999999999999988776654433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.35  E-value=7.6  Score=47.52  Aligned_cols=78  Identities=10%  Similarity=0.294  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH  419 (762)
Q Consensus       340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~  419 (762)
                      +.+++..+.+.+++..-.+.+++|.++++++-+..+     .+.-.+...=|+-++|..++-..++.++..++.+..+++
T Consensus       589 ~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~  663 (717)
T PF10168_consen  589 KSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN-----SQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD  663 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444555555555544322110     001111111245667777777888888888888888887


Q ss_pred             HHH
Q 041515          420 RTY  422 (762)
Q Consensus       420 Rtf  422 (762)
                      +.=
T Consensus       664 ~Q~  666 (717)
T PF10168_consen  664 YQQ  666 (717)
T ss_pred             HHH
Confidence            753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.30  E-value=18  Score=44.78  Aligned_cols=37  Identities=22%  Similarity=0.126  Sum_probs=22.2

Q ss_pred             HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          385 EITKNSRKVDTDIERILKETRELQLESNSIQERLHRT  421 (762)
Q Consensus       385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rt  421 (762)
                      |=.+-||++=.+|...+.||+.....+..--..+++.
T Consensus       390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~  426 (1200)
T KOG0964|consen  390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE  426 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            3355788888888888888876544443333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.27  E-value=18  Score=47.82  Aligned_cols=20  Identities=15%  Similarity=-0.021  Sum_probs=12.2

Q ss_pred             ccCcHHHHHHHHHHHHHhcC
Q 041515          258 LCDPEEEYQLLKAAAEMAFD  277 (762)
Q Consensus       258 ~~e~e~~~~~~~~~~e~l~d  277 (762)
                      ++.+++.++..+.+.+.+..
T Consensus       232 i~~m~~~l~~~r~t~~~~~~  251 (1486)
T PRK04863        232 FQDMEAALRENRMTLEAIRV  251 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            55666777777766554433

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.07  E-value=26  Score=40.71  Aligned_cols=70  Identities=20%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhhhhhcccCcHHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhH
Q 041515          243 RDESLMEAVTAKTSELCDPEEEYQLLKAAAEM-AFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKE  312 (762)
Q Consensus       243 ~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e~-l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~  312 (762)
                      ..+.+.+++.+.+.++.+.|++++..+..... +++......+.+..++....+.+.++..+..++...+.
T Consensus       162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~  232 (498)
T TIGR03007       162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR  232 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666667777777777776643322 22222223455666666666666666666666665554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.06  E-value=31  Score=40.89  Aligned_cols=43  Identities=26%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhhh
Q 041515          438 SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLE  491 (762)
Q Consensus       438 ~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~~  491 (762)
                      +|.||-......-+..-++.++++++..           ..||.+|++|-+-|.
T Consensus       315 ~~~qI~~le~~l~~~~~~leel~~kL~~-----------~sDYeeIK~ELsiLk  357 (629)
T KOG0963|consen  315 HKAQISALEKELKAKISELEELKEKLNS-----------RSDYEEIKKELSILK  357 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hccHHHHHHHHHHHH
Confidence            4566666555666666666666666542           378888888877653

>PRK09039 hypothetical protein; Validated

Probab=91.91  E-value=10  Score=42.27  Aligned_cols=102  Identities=12%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             HHHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhH---HHHHHHHHHHHH
Q 041515          248 MEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKE---SLEEKKRSLEES  324 (762)
Q Consensus       248 ~~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~---pl~~~~~~l~~~  324 (762)
                      .++++....++.+++.++..+-..+.+--......+.-+..|+...++.+.+...|..+-+....   |+......+.++
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~  124 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE  124 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence            46666666667777776666554444433333446777788888777777777777765543322   555555555555


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHH
Q 041515          325 LYANELEAQAKLLKLREVELERQSV  349 (762)
Q Consensus       325 ~~~~~~e~~~k~~~ik~~~~~~~~~  349 (762)
                      +.....++.+..-++..+++++..+
T Consensus       125 L~~~k~~~se~~~~V~~L~~qI~aL  149 (343)
T PRK09039        125 LDSEKQVSARALAQVELLNQQIAAL  149 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5544444443333444444444333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.89  E-value=34  Score=45.33  Aligned_cols=93  Identities=12%  Similarity=0.147  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 041515          267 LLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELER  346 (762)
Q Consensus       267 ~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~  346 (762)
                      .++.+...|.+    .+.++.+++..++....++..|..|=++.+.-+...     ++......+......+++++..+.
T Consensus       294 rk~eA~kkLe~----tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~-----ee~lr~q~ei~~l~~~LeELee~L  364 (1486)
T PRK04863        294 ELYTSRRQLAA----EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV-----QTALRQQEKIERYQADLEELEERL  364 (1486)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33446666777    788999999988888888888888877776543332     221111122222233445555555


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHh
Q 041515          347 QSVLSEIRKREDEYSKLSADLE  368 (762)
Q Consensus       347 ~~~~~e~~~k~e~~~~L~~~~~  368 (762)
                      ++..+++...++.+..+..+++
T Consensus       365 ee~eeeLeeleeeleeleeEle  386 (1486)
T PRK04863        365 EEQNEVVEEADEQQEENEARAE  386 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555544443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=91.89  E-value=45  Score=42.28  Aligned_cols=74  Identities=14%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRT  421 (762)
Q Consensus       346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rt  421 (762)
                      |+++..+++.-.+++.+.+++.+...+  .-++-++|+-|+-+++.+-|-++.++-.|-++.+|.--+.++...+.
T Consensus      1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~--~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a 1659 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEK--LATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSA 1659 (1758)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555443333  23457899999999999999999999999999888877777665544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.63  E-value=2.5  Score=43.74  Aligned_cols=45  Identities=13%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             CChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515          280 HPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES  324 (762)
Q Consensus       280 ~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~  324 (762)
                      ++.-.-+.+|+..+++.++++.++.++|......+.+++.++++.
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  133 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV  133 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            334556667888888888899999999998888888877665554

>TIGR00803 nst UDP-galactose transporter

Probab=91.41  E-value=2.8  Score=43.17  Aligned_cols=63  Identities=14%  Similarity=0.061  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHHhhhe
Q 041515          599 LGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSVGVAV  662 (762)
Q Consensus       599 lgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~GV~l  662 (762)
                      +.+..++.-.+-++.++|.+..+..++-+ +-++ +++++++++|+.++...++++.++++|+.+
T Consensus       158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~-~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       158 VGLLNVGGGLCIGGVVRYADNTTKSFVTA-LSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHhcCceeeehhHHhHHHHHHHHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            34445555566788899998888888874 5665 478899999999999999999999999865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.31  E-value=44  Score=41.71  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=19.4

Q ss_pred             HHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          386 ITKNSRKVDTDIERILKETRELQLESNSIQERLH  419 (762)
Q Consensus       386 iv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~  419 (762)
                      +-.-|.+-++|+.+|.---..|+++.+....++.
T Consensus       333 ~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~  366 (1200)
T KOG0964|consen  333 VKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLA  366 (1200)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence            3334445556666666666666666666555554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.28  E-value=1.5  Score=47.88  Aligned_cols=68  Identities=7%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             HHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          598 ALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       598 plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      .+|++ +.++-..+..|+.|.|.+..+-+-+.+.++.++++.++++|++++.-.+++++.++|..+...
T Consensus        68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence            35554 778888889999999999999998655666689999999999999999999999999776654

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.19  E-value=33  Score=42.83  Aligned_cols=106  Identities=11%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHh-----hHHHHHH
Q 041515          382 RIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILAT-----DRVRREI  456 (762)
Q Consensus       382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~t-----g~~~rei  456 (762)
                      ++.++..+++-=++++.+--.+..+++++-+..+..+.++=--+++.= ..-..++.|...++..++.     -.-.-.+
T Consensus       305 k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q-~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~  383 (1072)
T KOG0979|consen  305 KVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ-AELQETEDPENPVEEDQEIMKEVLQKKSSKL  383 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhcCCccccchhHHHHHHHHHHHHhhhh
Confidence            444555555555555555555666666666666555555543333321 1112233333322222111     1111223


Q ss_pred             HHHHHHHHHHhccc---cchhhhhhhHHHHHHHhh
Q 041515          457 AEYEKKLAAVASRS---LNVDKLQADVDVIMKENE  488 (762)
Q Consensus       457 ~~le~qi~~~~~k~---~nle~i~~D~~~i~~en~  488 (762)
                      ++.-..|+.++.+.   ..++.+..++....+.|.
T Consensus       384 ~~~~~~id~~~~~~~~~~~l~~~kr~~~~~~~~~~  418 (1072)
T KOG0979|consen  384 RDSRQEIDAEQLKSQKLRDLENKKRKLKQNSDLNR  418 (1072)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44444555544433   556666666665555554

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.89  E-value=54  Score=41.39  Aligned_cols=15  Identities=20%  Similarity=0.375  Sum_probs=5.8

Q ss_pred             hhhhhhhHHHHHHHh
Q 041515          473 VDKLQADVDVIMKEN  487 (762)
Q Consensus       473 le~i~~D~~~i~~en  487 (762)
                      ++....++.+.+++.
T Consensus       721 l~~~~~~~~~~~~~~  735 (908)
T COG0419         721 LESRKAELEELKKEL  735 (908)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.71  E-value=22  Score=37.42  Aligned_cols=30  Identities=20%  Similarity=0.213  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515          285 YLEQLDEQVGAKKHNLVELELQWDALKESL  314 (762)
Q Consensus       285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl  314 (762)
                      .+..|+........|+..|..+-...+...
T Consensus        79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~  108 (237)
T PF00261_consen   79 ARKVLENREQSDEERIEELEQQLKEAKRRA  108 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555554444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.54  E-value=52  Score=40.55  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515          338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQ  370 (762)
Q Consensus       338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~  370 (762)
                      ++.++..++.....+....+..+.+++..+++-
T Consensus       238 ~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~  270 (754)
T TIGR01005       238 QLAELNTELSRARANRAAAEGTADSVKKALQNG  270 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            556666666666666666666777777666543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=90.52  E-value=63  Score=43.23  Aligned_cols=136  Identities=26%  Similarity=0.265  Sum_probs=78.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH---HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515          291 EQVGAKKHNLVELELQWDALKESLEEKKRSLEES---LYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL  367 (762)
Q Consensus       291 ~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~---~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~  367 (762)
                      +..+.-++++.+|...|.+.|..+.++...+++-   ......+++.   .|..+...+..+..++..+...+.+|+.++
T Consensus       798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~---~i~~~~~~~~~~~~~l~~~~~~~~~le~k~  874 (1822)
T KOG4674|consen  798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQN---LVDELESELKSLLTSLDSVSTNIAKLEIKL  874 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556789999999999999998886665553   3333344443   445555566666666666666666555555


Q ss_pred             hcCCCcc----ChH------HHHHHHHHHHhhhhhhHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          368 EKQPKVA----SRR------SYIERIKEITKNSRKVDTDI-------ERILKETRELQLESNSIQERLHRTYAVVDDMI  429 (762)
Q Consensus       368 ~~~~k~~----~R~------~Yt~RI~Eiv~nirKQ~~eI-------~Kil~dtr~lqkein~~~~~l~Rtf~v~deli  429 (762)
                      ..+.+.+    .|.      +|..+-.-...++|+-.+++       ..=+..++++|....+....|.+.=...|+.-
T Consensus       875 ~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~  953 (1822)
T KOG4674|consen  875 SELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR  953 (1822)
T ss_pred             HHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554431    111      23333333344445444444       23355666677776667777776666666543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.46  E-value=5.6  Score=43.77  Aligned_cols=50  Identities=28%  Similarity=0.254  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515          318 KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL  367 (762)
Q Consensus       318 ~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~  367 (762)
                      .+.+++++.....+...+..++.+++++++.+...|+...+...++..++
T Consensus       206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444444444444443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=90.36  E-value=23  Score=36.32  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH--HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHH
Q 041515          336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS--YIERIKEITKNSRKVDTDIERILKETRELQLESNS  413 (762)
Q Consensus       336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~--Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~  413 (762)
                      +.+-.++..++..+..+++.++..++.|...++-..+...|..  +.+++.+.              -.++..++.|++.
T Consensus       117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~--------------~~~~~~l~~ei~~  182 (194)
T PF15619_consen  117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEA--------------QEEVKSLQEEIQR  182 (194)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence            3344566777888888888888889999988887766555543  33333333              3445556666666


Q ss_pred             HHHHH
Q 041515          414 IQERL  418 (762)
Q Consensus       414 ~~~~l  418 (762)
                      +..+|
T Consensus       183 L~~kl  187 (194)
T PF15619_consen  183 LNQKL  187 (194)
T ss_pred             HHHHH
Confidence            65555

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.95  E-value=5  Score=44.36  Aligned_cols=61  Identities=23%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             HHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 041515          308 DALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQP  371 (762)
Q Consensus       308 e~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~  371 (762)
                      .+....|.++...|++....-+..   .-++++.+++++.+...++..+.+.+.+|+.+++.+.
T Consensus       183 ~~~~~~L~~e~~~Lk~~~~e~~~~---D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~  243 (325)
T PF08317_consen  183 RERKAELEEELENLKQLVEEIESC---DQEELEALRQELAEQKEEIEAKKKELAELQEELEELE  243 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666555543321111   2246677777888888888888777777777776443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=89.92  E-value=51  Score=39.56  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=43.5

Q ss_pred             cCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515          276 FDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRK  355 (762)
Q Consensus       276 ~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~  355 (762)
                      -|.+...++-|..|++.-+..+.+..+=...-.+.|+...+- ..|.          ..+-+.|..+..+.+.+..-++.
T Consensus       445 ~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~-etl~----------~K~ge~i~~L~sE~~~lk~il~~  513 (961)
T KOG4673|consen  445 KDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA-ETLE----------EKKGELITKLQSEENKLKSILRD  513 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-hHHH----------HHhhhHHHHHHHHHHHHHHHhhh
Confidence            334444677888887766666655544444333333322111 0111          11223555666666666666666


Q ss_pred             hHHHHHHHHHHHhcCCCc
Q 041515          356 REDEYSKLSADLEKQPKV  373 (762)
Q Consensus       356 k~e~~~~L~~~~~~~~k~  373 (762)
                      |++.-+++...++++.-.
T Consensus       514 Kee~Ek~~~E~I~k~~ae  531 (961)
T KOG4673|consen  514 KEETEKLLQETIEKHQAE  531 (961)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666555555444444333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=89.83  E-value=70  Score=40.96  Aligned_cols=20  Identities=15%  Similarity=0.228  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHhccc
Q 041515          451 RVRREIAEYEKKLAAVASRS  470 (762)
Q Consensus       451 ~~~rei~~le~qi~~~~~k~  470 (762)
                      ....++++|+.+++++.++.
T Consensus       753 ~~~~~vl~Lq~~LEqe~~~r  772 (1317)
T KOG0612|consen  753 QLITEVLKLQSMLEQEISKR  772 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            44556777777777777765

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.54  E-value=43  Score=38.11  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 041515          284 FYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKL  363 (762)
Q Consensus       284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L  363 (762)
                      +-+..-...+......+ ++.+|.++++..+.+++.+..+.    ..+   ...++|++++.++++.+-+-..--.+..+
T Consensus       128 ~k~~~~~~~~~q~esll-e~~~q~da~~qq~~~ele~~d~~----~~~---d~ee~kqlEe~ieeL~qsl~kd~~~~~~l  199 (446)
T KOG4438|consen  128 EKMDLYRPFIQQLESLL-ELRKQLDAKYQQALKELERFDED----VEE---DEEEVKQLEENIEELNQSLLKDFNQQMSL  199 (446)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc----ccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444433 66666666666666555544432    111   23567778888888888887778888889


Q ss_pred             HHHHhcCCCccChHHHHHHHHHH
Q 041515          364 SADLEKQPKVASRRSYIERIKEI  386 (762)
Q Consensus       364 ~~~~~~~~k~~~R~~Yt~RI~Ei  386 (762)
                      ..+|.++.+ .+++.|+++....
T Consensus       200 ~~e~n~~k~-s~~s~~~k~l~al  221 (446)
T KOG4438|consen  200 LAEYNKMKK-SSTSEKNKILNAL  221 (446)
T ss_pred             HHHHHHHhH-hhHHHHHHHHHHH
Confidence            999999888 4588888876553

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.42  E-value=16  Score=44.55  Aligned_cols=103  Identities=20%  Similarity=0.357  Sum_probs=64.3

Q ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---hHH-HHHHHHHHhhHHHHHHHHHHHHH
Q 041515          388 KNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQ---SFE-QVSEKILATDRVRREIAEYEKKL  463 (762)
Q Consensus       388 ~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~---~~~-~l~~~i~~tg~~~rei~~le~qi  463 (762)
                      +--++|++.++|.|.+=|.=.++..   ++..|..+..      -+.+.+   .|. ..=++-.|.+++++|++..|+++
T Consensus       498 ~eE~~~R~~lEkQL~eErk~r~~ee---~~aar~~~~~------~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~  568 (697)
T PF09726_consen  498 AEERRQRASLEKQLQEERKARKEEE---EKAARALAQA------QATRQECAESCRQRRRQLESELKKLRRELKQKEEQI  568 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH---Hhhhhccccc------hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999987775555533   2444443321      111112   343 22344466788888888888887


Q ss_pred             HHHhccc-----------cchhhhhhhHHHHHHHhhhhhhhccCCCc
Q 041515          464 AAVASRS-----------LNVDKLQADVDVIMKENEFLEQQFHRDGR  499 (762)
Q Consensus       464 ~~~~~k~-----------~nle~i~~D~~~i~~en~~~~s~~g~~~~  499 (762)
                      ...++..           ...|-+..-+..|+..|.-||......+|
T Consensus       569 ~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr  615 (697)
T PF09726_consen  569 RELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR  615 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            7666522           34667777777888888888777665444

; GO: 0016021 integral to membrane

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=89.40  E-value=21  Score=42.12  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=13.0

Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515          381 ERIKEITKNSRKVDTDIERILKETRE  406 (762)
Q Consensus       381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~  406 (762)
                      ++.-+...-+.+|..+.++|-.-|.+
T Consensus       122 e~~~e~~~~~~~~~~~le~~a~lt~~  147 (514)
T TIGR03319       122 EKEEELEELIAEQREELERISGLTQE  147 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            44444445555555555555544443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.32  E-value=56  Score=40.34  Aligned_cols=72  Identities=15%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          347 QSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR  420 (762)
Q Consensus       347 ~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R  420 (762)
                      +++.......+..|++++..|..+-..  -..-.+.--+|++...-+++.|.++-+...+|-..+..++...+|
T Consensus       413 ee~e~~~l~~e~ry~klkek~t~l~~~--h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~  484 (980)
T KOG0980|consen  413 EEAENKALAAENRYEKLKEKYTELRQE--HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGR  484 (980)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444566666666666544221  122445666788888888888886666555555555555555555

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.30  E-value=42  Score=37.68  Aligned_cols=7  Identities=29%  Similarity=0.373  Sum_probs=2.7

Q ss_pred             cChHHHH
Q 041515          374 ASRRSYI  380 (762)
Q Consensus       374 ~~R~~Yt  380 (762)
                      +++..|.
T Consensus       193 is~~~~~  199 (423)
T TIGR01843       193 VSRLELL  199 (423)
T ss_pred             CCHHHHH
Confidence            3344443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF13514 AAA_27: AAA domain

Probab=89.13  E-value=33  Score=44.30  Aligned_cols=104  Identities=22%  Similarity=0.300  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhhc------hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc---ChHHHHHHH
Q 041515          313 SLEEKKRSLEESLYAN------ELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVA---SRRSYIERI  383 (762)
Q Consensus       313 pl~~~~~~l~~~~~~~------~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~---~R~~Yt~RI  383 (762)
                      |+..+.+.++.++..-      -.+   -..++..+..++.....++....+.+.++..+++.++-+.   ....-+...
T Consensus       215 p~~~~~~~l~~~l~~l~~~~~~p~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L  291 (1111)
T PF13514_consen  215 PLLAELQQLEAELAELGEVPDFPED---GAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEAL  291 (1111)
T ss_pred             HHHHHHHHHHHHHHhcCCcCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHH
Confidence            6677778888776621      112   2346677788899999999999999999999999997763   344455666


Q ss_pred             HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          384 KEITKNSRKVDTDIERILKETRELQLESNSIQERLH  419 (762)
Q Consensus       384 ~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~  419 (762)
                      .+--+.+++-..|+.+.-.+...++.++..+...|.
T Consensus       292 ~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg  327 (1111)
T PF13514_consen  292 EEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG  327 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            666666666666666666666666666666665555

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=89.11  E-value=81  Score=40.69  Aligned_cols=15  Identities=7%  Similarity=0.025  Sum_probs=8.1

Q ss_pred             cHHHHHHHHHHHHHH
Q 041515          671 NIFGAIIAVAWIIPS  685 (762)
Q Consensus       671 s~~G~ilalls~l~~  685 (762)
                      +.+|-++.++.+++.
T Consensus       629 ~~lgr~~~i~~~~~l  643 (1109)
T PRK10929        629 GTLGRLCFILLCGAL  643 (1109)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            456666555554443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.00  E-value=5.5  Score=43.91  Aligned_cols=16  Identities=38%  Similarity=0.549  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 041515          339 LREVELERQSVLSEIR  354 (762)
Q Consensus       339 ik~~~~~~~~~~~e~~  354 (762)
                      +++++.+-.++..|++
T Consensus        66 L~~LE~e~~~l~~el~   81 (314)
T PF04111_consen   66 LEELEKEREELDQELE   81 (314)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=88.95  E-value=75  Score=40.15  Aligned_cols=55  Identities=18%  Similarity=0.354  Sum_probs=34.3

Q ss_pred             cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          374 ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDM  428 (762)
Q Consensus       374 ~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~del  428 (762)
                      ..+..|.+.+...-.++.+=.+++.++-.+...++...+.....+++.+...+..
T Consensus       315 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~  369 (908)
T COG0419         315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER  369 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666666666666666666666666655544

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=88.87  E-value=66  Score=39.36  Aligned_cols=41  Identities=24%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHH--HHHHHHHHHHHHHHHHH
Q 041515          379 YIERIKEITKNSRKVDTDIERILK--ETRELQLESNSIQERLH  419 (762)
Q Consensus       379 Yt~RI~Eiv~nirKQ~~eI~Kil~--dtr~lqkein~~~~~l~  419 (762)
                      -+.||.+..---|-|..+|.|||.  ++.+|..|+..+..++.
T Consensus      1067 emdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1067 EMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567888888888999999999996  46788889888887764

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=88.85  E-value=37  Score=36.43  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=14.3

Q ss_pred             hhhHHhHHHHHHHHHHHHHHHH
Q 041515          391 RKVDTDIERILKETRELQLESN  412 (762)
Q Consensus       391 rKQ~~eI~Kil~dtr~lqkein  412 (762)
                      .-=+++|.+.-.++.+|+.+..
T Consensus       203 ~el~e~I~~L~~eV~~L~~~~~  224 (258)
T PF15397_consen  203 DELEEEIPQLRAEVEQLQAQAQ  224 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            3345667777777777776665

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=88.21  E-value=3.2  Score=44.08  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHH-----HHHHHHHHhhhhcchhHHHHHHHhhhHHHH-
Q 041515          560 FLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVM-----SFATGLANTSLKHNSVGFYQMSKIAVTPTI-  633 (762)
Q Consensus       560 ~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~-----~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-  633 (762)
                      .-+.+.+++++++...+.....-+.  +    .-..+++.++..     ++-..+..++|..+|-+.+.++-| ..|.+ 
T Consensus       178 ~g~a~gm~vAaviv~Pig~~~ag~~--l----~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlS-LePa~a  250 (292)
T COG5006         178 AGVAVGMLVAALIVLPIGAAQAGPA--L----FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLS-LEPALA  250 (292)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhcchh--h----cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHH-hhHHHH
Confidence            3445666666666555432111110  1    111345554432     244567788999999999999985 79988 


Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515          634 VLAEFILFSKTISYKKVLALAIVSVGVAVATV  665 (762)
Q Consensus       634 vll~~l~lgek~s~~~~lsLlli~~GV~la~~  665 (762)
                      ++..++++||++|+.+|++++.++.+++-.+.
T Consensus       251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         251 ALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence            77789999999999999999999988775443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.02  E-value=19  Score=39.87  Aligned_cols=54  Identities=24%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515          316 EKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK  369 (762)
Q Consensus       316 ~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~  369 (762)
                      +++..++.++.....+...+-.++.+++.+++.+.++++..++...++..+++.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e  262 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE  262 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555554444444344455666666666666666666666666665553

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.88  E-value=15  Score=38.65  Aligned_cols=19  Identities=16%  Similarity=0.305  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 041515          335 KLLKLREVELERQSVLSEI  353 (762)
Q Consensus       335 k~~~ik~~~~~~~~~~~e~  353 (762)
                      .+++|+.|++++..++..|
T Consensus        51 h~eeLrqI~~DIn~lE~iI   69 (230)
T PF10146_consen   51 HVEELRQINQDINTLENII   69 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.85  E-value=37  Score=35.25  Aligned_cols=55  Identities=15%  Similarity=0.373  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHH
Q 041515          345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERI  400 (762)
Q Consensus       345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Ki  400 (762)
                      .++++...+..-+++..|..-++..+|-+. |+.|--|+.+--+.+++=+.|+.+.
T Consensus        37 ~l~~i~~~leEa~ell~qMdlEvr~lp~~~-Rs~~~~KlR~yksdl~~l~~e~k~~   91 (220)
T KOG1666|consen   37 LLSEIDSKLEEANELLDQMDLEVRELPPNF-RSSYLSKLREYKSDLKKLKRELKRT   91 (220)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhCCchh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555556666788899999999999988 9999999998877777666666443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.78  E-value=19  Score=38.50  Aligned_cols=39  Identities=13%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc
Q 041515          335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV  373 (762)
Q Consensus       335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~  373 (762)
                      +..++..++..++....+++.+.+...+++..++.....
T Consensus        68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~  106 (302)
T PF10186_consen   68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR  106 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777788888888888888888887777755443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=87.74  E-value=9.4  Score=41.15  Aligned_cols=67  Identities=13%  Similarity=0.198  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHH----HHHHHHHHHHhhhe
Q 041515          595 SLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYK----KVLALAIVSVGVAV  662 (762)
Q Consensus       595 ~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~----~~lsLlli~~GV~l  662 (762)
                      +-+.-|++++....+..+|...+.++..-.+-. +.+++ .+...++|||+-+.+    ..++++++++|+++
T Consensus       197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ-~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQ-LGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHh-HHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            445578888888888888888888877666654 34554 788889999877665    34566666666654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.53  E-value=54  Score=39.75  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhcCCCccChHHHHHHHHH--HHhhhhhhHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515          358 DEYSKLSADLEKQPKVASRRSYIERIKE--ITKNSRKVDTDIERI--LKETRELQLESNSIQERLHRTYAVVDDMIFREA  433 (762)
Q Consensus       358 e~~~~L~~~~~~~~k~~~R~~Yt~RI~E--iv~nirKQ~~eI~Ki--l~dtr~lqkein~~~~~l~Rtf~v~delif~~a  433 (762)
                      +..+++..+++++|++..- .-.++..+  .-.|-+.|-.+|.-+  ..=.+.|||.|+.....|.|.-.-+-..+ .++
T Consensus       729 krA~~~~~k~~si~~~~~t-~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m-~~~  806 (1104)
T COG4913         729 KRAAMLSRKVHSIAKQGMT-GALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRM-SDA  806 (1104)
T ss_pred             HHHHHHHHHHhhhhhhhhh-HHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHH
Confidence            3445566667777775322 22222221  122233333333222  33567888888888888888765554443 344


Q ss_pred             Cc
Q 041515          434 KK  435 (762)
Q Consensus       434 kk  435 (762)
                      |+
T Consensus       807 k~  808 (1104)
T COG4913         807 KK  808 (1104)
T ss_pred             Hh
Confidence            44

>PF15556 Zwint: ZW10 interactor

Probab=87.37  E-value=32  Score=35.30  Aligned_cols=128  Identities=16%  Similarity=0.260  Sum_probs=71.7

Q ss_pred             HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhcC--
Q 041515          294 GAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS-KLSADLEKQ--  370 (762)
Q Consensus       294 ~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~-~L~~~~~~~--  370 (762)
                      +.+.++..+-+.||.+.++    .|++.-+.+++.-.++--++++-++-+..+++..+.++.|++... +++..-+.-  
T Consensus        55 dtsRqkai~aKeQWKeLKA----tYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwql  130 (252)
T PF15556_consen   55 DTSRQKAIEAKEQWKELKA----TYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQL  130 (252)
T ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788899999999987655    455555555544444444555555555566666666666655322 221111000  


Q ss_pred             CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          371 PKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVV  425 (762)
Q Consensus       371 ~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~  425 (762)
                      -+...-+...++.-|+-.--++-.++....-.+...|+-+--.-.+||.|+-+..
T Consensus       131 qQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfL  185 (252)
T PF15556_consen  131 QQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFL  185 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000112334444444444445556777777777777777777777777765543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=87.37  E-value=66  Score=42.52  Aligned_cols=206  Identities=14%  Similarity=0.114  Sum_probs=93.1

Q ss_pred             HHHhhhhhcccCcHHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515          249 EAVTAKTSELCDPEEEYQLLKAAAEMAFD--DSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY  326 (762)
Q Consensus       249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~d--~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~  326 (762)
                      .++.....++.++++....+....+-+|+  ++.++..-++.-...++...+++.....+.+..+..+.+..+++.+...
T Consensus       756 ~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa  835 (1353)
T TIGR02680       756 DELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAA  835 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444445555555555555556666  3444555555555666666666666666666666666666666665544


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515          327 ANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE  406 (762)
Q Consensus       327 ~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~  406 (762)
                      .....+.  .+.+..++..+......+..-...+.+|....+..+.      --+++-+.-..+.-++++......+...
T Consensus       836 ~l~L~a~--~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~------a~~~le~ae~~l~~~~~e~~~~~~e~~~  907 (1353)
T TIGR02680       836 DLDLPTD--PDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAE------QRARAARAESDAREAAEDAAEARAEAEE  907 (1353)
T ss_pred             cCCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2110000  0112222223322222222222233333222221111      1233334444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 041515          407 LQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVAS  468 (762)
Q Consensus       407 lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~  468 (762)
                      ++.+++.+...+.-..   ++ |.+.-  +..-.++-+.-.+.|...++..+++.++.....
T Consensus       908 a~~~l~~l~e~l~~~~---ee-l~a~L--~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~  963 (1353)
T TIGR02680       908 ASLRLRTLEESVGAMV---DE-IRARL--AETRAALASGGRELPRLAEALATAEEARGRAEE  963 (1353)
T ss_pred             HHHHHHHHHHHHHHHH---HH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555554321   11 11100  111233344444555555555555555554444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=87.19  E-value=3.4  Score=44.00  Aligned_cols=43  Identities=21%  Similarity=0.398  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515          376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL  418 (762)
Q Consensus       376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l  418 (762)
                      |..|=+|..|+=+.+++|+++|.+...|+..||++--.+=+|+
T Consensus        88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi  130 (248)
T PF08172_consen   88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI  130 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567789999999999999999999999999999887777665

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=87.06  E-value=4.7  Score=38.61  Aligned_cols=84  Identities=17%  Similarity=-0.055  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHHH
Q 041515          675 AIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQ  754 (762)
Q Consensus       675 ~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~ln  754 (762)
                      .+|++++.+++|+..++.|.-++  ++||.--.+--+.+..++++......+.+.... .-+...|.++++||+.+-+--
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~-~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG-EIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccc-ccCcceehhhhHHHHHHHHHH
Confidence            58999999999999999876654  477776666667777777766666655543211 124456788888997665555


Q ss_pred             HHHHhhc
Q 041515          755 WSGALAL  761 (762)
Q Consensus       755 ~s~fl~I  761 (762)
                      +..|++|
T Consensus        82 l~Yf~AL   88 (140)
T COG2510          82 LLYFRAL   88 (140)
T ss_pred             HHHHHHH
Confidence            5555543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.63  E-value=30  Score=34.82  Aligned_cols=7  Identities=43%  Similarity=0.510  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 041515          299 NLVELEL  305 (762)
Q Consensus       299 ~l~~L~~  305 (762)
                      ++.++..
T Consensus       103 ~~~~~~~  109 (191)
T PF04156_consen  103 RIQELES  109 (191)
T ss_pred             HHHHHHH
Confidence            3333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK12704 phosphodiesterase; Provisional

Probab=86.47  E-value=39  Score=39.93  Aligned_cols=13  Identities=15%  Similarity=0.332  Sum_probs=5.0

Q ss_pred             HHHHHhhHHHHHH
Q 041515          305 LQWDALKESLEEK  317 (762)
Q Consensus       305 ~qWe~~r~pl~~~  317 (762)
                      .++.+.|..+..+
T Consensus        64 eE~~~~R~Ele~e   76 (520)
T PRK12704         64 EEIHKLRNEFEKE   76 (520)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333334333333

>TIGR00634 recN DNA repair protein RecN

Probab=86.32  E-value=62  Score=38.57  Aligned_cols=26  Identities=8%  Similarity=-0.060  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhcCC
Q 041515          346 RQSVLSEIRKREDEYSKLSADLEKQP  371 (762)
Q Consensus       346 ~~~~~~e~~~k~e~~~~L~~~~~~~~  371 (762)
                      ++.-...+...++..+.+..-++.+.
T Consensus       214 L~~e~~~L~n~e~i~~~~~~~~~~L~  239 (563)
T TIGR00634       214 LEAEQQRLSNLEKLRELSQNALAALR  239 (563)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence            33334445555555555555555553

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length

Probab=86.15  E-value=6.4  Score=41.01  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHH-HHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELEL-QWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS  361 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~-qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~  361 (762)
                      .+++++++.+-++--+|++.--- .--.|-........++|.....+..|.+ ++.++.+++++-       -.+.+.+.
T Consensus        74 ae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEik-q~~~Leklr~k~-------psdr~~is  145 (219)
T PF06730_consen   74 AECLAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIK-QLKQLEKLRQKN-------PSDRQIIS  145 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccC-------Cccchhhh
Confidence            45666776666665555543211 1122222223333445555555555544 223333333321       12244566


Q ss_pred             HHHHHHhcCCCccChHHHHHHHHHHHhhhhhhH-HhHHHHHHHH
Q 041515          362 KLSADLEKQPKVASRRSYIERIKEITKNSRKVD-TDIERILKET  404 (762)
Q Consensus       362 ~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~-~eI~Kil~dt  404 (762)
                      +-+.++.+..-+++|+  |+-+-|.+.+-.||| .||.+|+.|-
T Consensus       146 qae~el~kas~~~~rt--~~~Lee~i~~FEkqKl~DlK~i~sdF  187 (219)
T PF06730_consen  146 QAESELQKASVDATRT--TKQLEETIDNFEKQKLKDLKKIFSDF  187 (219)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777676  677889999999998 6788888875

Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=86.06  E-value=8.8  Score=39.17  Aligned_cols=103  Identities=23%  Similarity=0.331  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh----HH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKR----ED  358 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k----~e  358 (762)
                      .....+++..++...+++..+..+++..+..+.+......+.     .|-...+.++++++.+.+++..++...    -+
T Consensus        61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~  135 (188)
T PF03962_consen   61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPE  135 (188)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            344455666555555566666555555555554442222211     232335566666666666666555522    23


Q ss_pred             HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhh
Q 041515          359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRK  392 (762)
Q Consensus       359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirK  392 (762)
                      .++++..+....-..+||  ||+=|.-|..-++|
T Consensus       136 ~i~~~~~~~~~~~~~anr--wTDNI~~l~~~~~~  167 (188)
T PF03962_consen  136 KIEKLKEEIKIAKEAANR--WTDNIFSLKSYLKK  167 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence            344444444333222221  55555555555544

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.92  E-value=5.8  Score=45.57  Aligned_cols=62  Identities=13%  Similarity=0.072  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515          357 EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL  418 (762)
Q Consensus       357 ~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l  418 (762)
                      |++-+||..-+..+..-..=+.|+.-++|+.++.+-|..--.+...|=+.++...+.++...
T Consensus       414 E~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~  475 (508)
T KOG3091|consen  414 EELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQ  475 (508)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHH
Confidence            44444555444444433444568888888888887777666667777777766666666655

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=85.84  E-value=96  Score=38.03  Aligned_cols=107  Identities=9%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 041515          262 EEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLRE  341 (762)
Q Consensus       262 e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~  341 (762)
                      -++-+.+++-+-+++|+++.-+..|..||-.+...+.....|    .+.+..+.+.+++.+.++-+...+.-...+++-.
T Consensus        84 tqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~l----Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsA  159 (1265)
T KOG0976|consen   84 TQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKL----QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA  159 (1265)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            444455666667777755555555555555444333333333    3455555555565555544433333322333333


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515          342 VELERQSVLSEIRKREDEYSKLSADLEKQPK  372 (762)
Q Consensus       342 ~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k  372 (762)
                      -+.++..+-++++.|-+.+..+..+|...-.
T Consensus       160 k~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~  190 (1265)
T KOG0976|consen  160 KAHDIFMIGEDLHDKNEELNEFNMEFQTKLA  190 (1265)
T ss_pred             hhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence            3456777777777776666666555554433

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=85.58  E-value=12  Score=37.25  Aligned_cols=116  Identities=21%  Similarity=0.297  Sum_probs=63.8

Q ss_pred             hcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHH
Q 041515          256 SELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAK  335 (762)
Q Consensus       256 ~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k  335 (762)
                      +++.+.+.++..++...+-|..       --..-+..-..+..++..+..+|+..+..|.....+|++...         
T Consensus        43 ~~n~~~~~e~~~L~~d~e~L~~-------q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r---------  106 (158)
T PF09744_consen   43 SRNQEHEVELELLREDNEQLET-------QYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENR---------  106 (158)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            3445555555555555554444       112233344566778899999999999999888888876532         


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhH
Q 041515          336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDI  397 (762)
Q Consensus       336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI  397 (762)
                           .+..+.+........-++...+|..++..+..     .|+.=+...+.-|.||+.+|
T Consensus       107 -----~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e-----r~~e~l~~~~e~ver~k~~~  158 (158)
T PF09744_consen  107 -----QLELKLKNLSDQSSRLEEREAELKKEYNRLHE-----RERELLRKLKEHVERQKDEI  158 (158)
T ss_pred             -----HHHHHhhhhhhhccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcC
Confidence                 12222232223232334444445555543322     35555555566666666554

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=85.47  E-value=24  Score=43.51  Aligned_cols=158  Identities=22%  Similarity=0.203  Sum_probs=92.9

Q ss_pred             cccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH-HhhchHHHHHH
Q 041515          257 ELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES-LYANELEAQAK  335 (762)
Q Consensus       257 ~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~-~~~~~~e~~~k  335 (762)
                      ...+++++++..+...+-+...+......++.++..+..+++++.+|+.|-+..+.--..-..+++.. -.....+++-+
T Consensus       590 ~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~  669 (769)
T PF05911_consen  590 EKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK  669 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34555666666665544444444446778888888888888888888887775443332222222211 00111222211


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515          336 --LLKLREVELERQSVLSEIRKREDE-------YSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE  406 (762)
Q Consensus       336 --~~~ik~~~~~~~~~~~e~~~k~e~-------~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~  406 (762)
                        -.+++.++.++..+..|++.....       ...|+.++++..++.+ .....    -.+.--||+-||..--.=-.+
T Consensus       670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~-~~~~~----~~~~k~kqe~EiaaAA~KLAE  744 (769)
T PF05911_consen  670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES-LQQLA----NEDKKIKQEKEIAAAAEKLAE  744 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc-hhhcc----ccccccchHHHHHHHHHHHHH
Confidence              235677788888888888766433       4456666666655432 11111    223334677788888887888


Q ss_pred             HHHHHHHHHHHHH
Q 041515          407 LQLESNSIQERLH  419 (762)
Q Consensus       407 lqkein~~~~~l~  419 (762)
                      =|+.|-+++-+|.
T Consensus       745 CQeTI~sLGkQLk  757 (769)
T PF05911_consen  745 CQETIASLGKQLK  757 (769)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887775

The function of this family is unknown.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=85.35  E-value=33  Score=35.93  Aligned_cols=76  Identities=12%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515          340 REVELERQSVLSEIRKR-----EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI  414 (762)
Q Consensus       340 k~~~~~~~~~~~e~~~k-----~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~  414 (762)
                      +++..++++...+.+.+     .+-...|+.++++...+..+..       +-.+|.|+++|..++++|+|..-++-+.-
T Consensus        74 ~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~-------~~~ei~k~r~e~~~ml~evK~~~E~y~k~  146 (230)
T PF03904_consen   74 KEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNI-------AQNEIKKVREENKSMLQEVKQSHEKYQKR  146 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555444     4445558888888877643333       66789999999999999988865555544


Q ss_pred             HHHHHHHH
Q 041515          415 QERLHRTY  422 (762)
Q Consensus       415 ~~~l~Rtf  422 (762)
                      ...+-..|
T Consensus       147 ~k~~~~gi  154 (230)
T PF03904_consen  147 QKSMYKGI  154 (230)
T ss_pred             HHHHHHhH
Confidence            44443333

>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=85.31  E-value=56  Score=35.65  Aligned_cols=28  Identities=4%  Similarity=-0.084  Sum_probs=16.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 041515          524 KICGPVVAMTFNFVVSVGIILTNKLVMG  551 (762)
Q Consensus       524 ~~~~~~~ai~~~~v~Sv~ii~~NK~vl~  551 (762)
                      +++.+..|..+-.+......++..|++.
T Consensus       101 ~i~~tF~~ssIlLl~~Siss~iG~YiLa  128 (299)
T PF05884_consen  101 SIVETFSWSSILLLGFSISSFIGGYILA  128 (299)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555567777765

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=85.30  E-value=58  Score=40.09  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhhhhcccCcHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515          244 DESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFD-DSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESL  314 (762)
Q Consensus       244 ~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e~l~d-~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl  314 (762)
                      .+.+.+++.+.+.++++-|.+++..++...++.. ...-.+..+..|+..+.....++...+.+++..+.-+
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l  267 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL  267 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566666667777777777777765443322 1111235566666666666555555555555544433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.27  E-value=24  Score=34.79  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CccchhHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 041515          545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPA--ITTPFSSLFALGVVMSFATGLANTSLKHNSVGFY  622 (762)
Q Consensus       545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~--~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~  622 (762)
                      +|-.+-..  -..|+.-+++-++++++++.+.... ....+++.  .+.||..++ -|++-+..+..+.....-+.....
T Consensus        23 iN~qL~~~--~~spl~As~isf~vGt~~L~~l~l~-~~~~~~~a~~~~~pwW~~~-GG~lGa~~vt~s~~l~p~lGa~~t   98 (150)
T COG3238          23 INGRLARY--LGSPLLASLISFLVGTVLLLILLLI-KQGHPGLAAVASAPWWAWI-GGLLGAIFVTSSILLAPRLGAATT   98 (150)
T ss_pred             HHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhccCCchHHHH-ccchhhhhhhhhHHhccchhHHHH
Confidence            45554443  3459999999999988777665433 12222221  334554333 232222333333333344444444


Q ss_pred             HHHHhhhHHHH-HHHHHH-Hhc---ccccHHHHHHHHHHHHhhhee
Q 041515          623 QMSKIAVTPTI-VLAEFI-LFS---KTISYKKVLALAIVSVGVAVA  663 (762)
Q Consensus       623 qmlKsas~P~~-vll~~l-~lg---ek~s~~~~lsLlli~~GV~la  663 (762)
                      +++--+.--+. ++++.+ ++|   +.+++.++++++++++|+.++
T Consensus        99 ~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          99 IALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            44432222233 455544 444   678999999999999996654

>PRK00106 hypothetical protein; Provisional

Probab=85.27  E-value=56  Score=38.73  Aligned_cols=15  Identities=20%  Similarity=0.113  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 041515          562 TVIHYAVAWILLAIF  576 (762)
Q Consensus       562 t~~q~l~a~ill~i~  576 (762)
                      ++-|.+.++.++..+
T Consensus       351 l~~HSv~VA~lA~~l  365 (535)
T PRK00106        351 VLRHSVEVGKLAGIL  365 (535)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445666555555443

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.96  E-value=79  Score=36.29  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-HHH--------------HHHHHHhhhhhhHHhHHHHH
Q 041515          337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-YIE--------------RIKEITKNSRKVDTDIERIL  401 (762)
Q Consensus       337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-Yt~--------------RI~Eiv~nirKQ~~eI~Kil  401 (762)
                      .+|+++-.-++...++|.+=-+.-.+|+++..+.....+|+. ||+              +-++....|+-==.+|.-.+
T Consensus       389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i  468 (521)
T KOG1937|consen  389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMI  468 (521)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666666666666666667777777766677765 443              33333333443344555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 041515          402 KETRELQLESNSIQER  417 (762)
Q Consensus       402 ~dtr~lqkein~~~~~  417 (762)
                      .||-.+.+|+--+..+
T Consensus       469 ~~tg~~~revrdlE~q  484 (521)
T KOG1937|consen  469 RETGALKREVRDLESQ  484 (521)
T ss_pred             HHcchHHHHHHHHHHH
Confidence            5555555444444433

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=84.92  E-value=27  Score=38.33  Aligned_cols=121  Identities=15%  Similarity=0.240  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAV  424 (762)
Q Consensus       345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v  424 (762)
                      +.++..++...--.-..++..+++.|+-           .++-.+|.|.++.|...-.++.+++++++.++..+.. |..
T Consensus        42 ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~-----------~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~-y~~  109 (301)
T PF06120_consen   42 NAEQARQEAIEFADSLDELKEKLKEMSS-----------TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN-YQQ  109 (301)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            3444444444444555556666666543           3455666666666666666666677777766666652 221


Q ss_pred             HHHHHHhhcCccc------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHH
Q 041515          425 VDDMIFREAKKDQ------SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVD  481 (762)
Q Consensus       425 ~delif~~akkd~------~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~  481 (762)
                          ...+-...+      +++.+-+..++.-...+++...+.+++...+|..+..+..+|..
T Consensus       110 ----~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~  168 (301)
T PF06120_consen  110 ----QLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT  168 (301)
T ss_pred             ----HHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111211111      23344445555555666666666666666665555555555543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=84.71  E-value=1.1e+02  Score=37.87  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041515          355 KREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAK  434 (762)
Q Consensus       355 ~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ak  434 (762)
                      +.+++..+|...++.+.....|  ....--++-+.+++=+.|...-+.+...+|..+.+..   .+.=+-.-++-=....
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~--~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~---qs~~~~~~~l~~~l~~  537 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGR--AETKTESQAKALESLRQELALLLIELEELQRTLSNLA---QSHNNQLAQLEDLLKQ  537 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHh
Confidence            4455555555555554432222  2233345556666667777777777777777733322   2222333333333455


Q ss_pred             ccchHHHHHHHHHHh
Q 041515          435 KDQSFEQVSEKILAT  449 (762)
Q Consensus       435 kd~~~~~l~~~i~~t  449 (762)
                      ||.-+..+....++.
T Consensus       538 KD~~~~~~~~~~~e~  552 (980)
T KOG0980|consen  538 KDRLAAELVAREEER  552 (980)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            666555555444333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.37  E-value=12  Score=37.69  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041515          286 LEQLDEQVGAKKHNLVELELQWDALK  311 (762)
Q Consensus       286 ~~kL~~~~~~~~~~l~~L~~qWe~~r  311 (762)
                      +.+++..+......+..+...|...+
T Consensus        97 l~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   97 LDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33344444444445555555554444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=84.11  E-value=56  Score=37.62  Aligned_cols=18  Identities=11%  Similarity=0.211  Sum_probs=11.5

Q ss_pred             cchhhhhhhHHHHHHHhh
Q 041515          471 LNVDKLQADVDVIMKENE  488 (762)
Q Consensus       471 ~nle~i~~D~~~i~~en~  488 (762)
                      ..||+...||+-..++..
T Consensus       410 ~slek~~~~~~sl~~~i~  427 (622)
T COG5185         410 KSLEKTLRQYDSLIQNIT  427 (622)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            456667777776666554

>PRK12705 hypothetical protein; Provisional

Probab=83.90  E-value=59  Score=38.33  Aligned_cols=27  Identities=19%  Similarity=0.128  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515          300 LVELELQWDALKESLEEKKRSLEESLY  326 (762)
Q Consensus       300 l~~L~~qWe~~r~pl~~~~~~l~~~~~  326 (762)
                      +.+-..++.++|....+++++.+.++.
T Consensus        54 ~~~~~~~~~~~~~~~e~e~~~~~~~~~   80 (508)
T PRK12705         54 LLEAKELLLRERNQQRQEARREREELQ   80 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555544433

>KOG4421 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.68  E-value=27  Score=38.75  Aligned_cols=93  Identities=22%  Similarity=0.309  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCccchHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHhccc----cchhhhhh
Q 041515          411 SNSIQERLHRTYAVVDDMIFREAKKDQSFEQV--------SEKILATDRVRREIAEYEKKLAAVASRS----LNVDKLQA  478 (762)
Q Consensus       411 in~~~~~l~Rtf~v~delif~~akkd~~~~~l--------~~~i~~tg~~~rei~~le~qi~~~~~k~----~nle~i~~  478 (762)
                      .++-....-|.-+.-.+++|+.|.+..-.-+|        +++.+-+..+-.|.|+||+..+....+.    -....+..
T Consensus       108 sdsaaaaaarid~~ee~l~~~~aq~erlvgeiaenerqhavemaelsekia~emr~lede~~r~~mrtkaaavatkpled  187 (637)
T KOG4421|consen  108 SDSAAAAAARIDAAEEALIFEEAQKERLVGEIAENERQHAVEMAELSEKIADEMRDLEDETERIAMRTKAAAVATKPLED  187 (637)
T ss_pred             CCcccccccccchHHHHHHHHHHHhhHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchh
Confidence            34556667788888899999999997754433        6778889999999999999999888866    22334444


Q ss_pred             hHHHHHHHhhhhhhhccCCCchhHH
Q 041515          479 DVDVIMKENEFLEQQFHRDGRALEE  503 (762)
Q Consensus       479 D~~~i~~en~~~~s~~g~~~~~~~~  503 (762)
                      .+.+|.+....+-.|.++-.-+.++
T Consensus       188 elekieekkeeli~~~peppesqee  212 (637)
T KOG4421|consen  188 ELEKIEEKKEELIGDQPEPPESQEE  212 (637)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHH
Confidence            5556666555444444433333333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=83.56  E-value=34  Score=38.49  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             ChhHHHHHHhhhhhhhcCCCC--C--CCCC-ChhHHHHHHhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHH
Q 041515           70 TSETLVSICGQSLNLIFNTMT--F--GTSL-PHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVE  144 (762)
Q Consensus        70 tte~~v~~~~~cl~~I~p~~~--l--~~~l-P~~msaRfr~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLie  144 (762)
                      +-|+++-++.-|-|+|. ..|  +  |.-+ .|+     .+++.|-.+|+++|.+-|.+=+.+==|..+.+=.++-.|..
T Consensus        38 p~eQF~~F~~L~~WL~~-~~g~~f~~p~e~DDPn-----~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad  111 (359)
T PF10498_consen   38 PGEQFYYFTSLCAWLIS-KAGRKFEQPQEYDDPN-----ATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLAD  111 (359)
T ss_pred             chHHHHHHHHHHHHHHH-hcCCCCCCCcccCCHH-----HHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHH
Confidence            56899999999999998 333  2  2222 234     35789999999999999999898988999988888888876


Q ss_pred             H
Q 041515          145 R  145 (762)
Q Consensus       145 k  145 (762)
                      +
T Consensus       112 ~  112 (359)
T PF10498_consen  112 E  112 (359)
T ss_pred             H
Confidence            4

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=83.56  E-value=18  Score=35.62  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhcCCCccChHH----------H-----HHHHHHHHhhhhhhHHhH
Q 041515          334 AKLLKLREVELERQSVLSEIRKREDE-YSKLSADLEKQPKVASRRS----------Y-----IERIKEITKNSRKVDTDI  397 (762)
Q Consensus       334 ~k~~~ik~~~~~~~~~~~e~~~k~e~-~~~L~~~~~~~~k~~~R~~----------Y-----t~RI~Eiv~nirKQ~~eI  397 (762)
                      +.-..|++++..++....+.+...+. +.-|...-...........          +     =.-|..++++++   ..+
T Consensus        59 ~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~---~hl  135 (160)
T PF13094_consen   59 RDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDEELLPLLKQLN---KHL  135 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccccccccccccccccccCcccchHHHHHHHHHHH---HHH
Confidence            33456677777777777777666555 3333332222222211211          1     223444444444   333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          398 ERILKETRELQLESNSIQERLHRTYAVVD  426 (762)
Q Consensus       398 ~Kil~dtr~lqkein~~~~~l~Rtf~v~d  426 (762)
                      +.|...+    .++..+...++|+++.+|
T Consensus       136 ~s~~~n~----~~l~~~~~~ie~~~~~Ld  160 (160)
T PF13094_consen  136 ESMQNNL----QQLKGLLEAIERSYAALD  160 (160)
T ss_pred             HHHHccH----HHHHHHHHHHHHHHHhcC
Confidence            3333333    336677788888887654

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=83.50  E-value=15  Score=45.64  Aligned_cols=14  Identities=21%  Similarity=-0.021  Sum_probs=7.6

Q ss_pred             CCCCcccceeeccc
Q 041515            5 PPSKRWRLTWFPLH   18 (762)
Q Consensus         5 ~~~~~~~~~~~~~~   18 (762)
                      |+++|.-..+.|+.
T Consensus        25 ~~Gk~~l~~l~P~~   38 (782)
T PRK00409         25 ELGKEKVLQLDPET   38 (782)
T ss_pred             HHHHHHHHcCCCCC
Confidence            44555555566654

>PRK09343 prefoldin subunit beta; Provisional

Probab=83.44  E-value=35  Score=32.32  Aligned_cols=99  Identities=18%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHhcCCCccC------hHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 041515          333 QAKLLKLREVELERQSVLSEIRKREDEYSK---LSADLEKQPKVAS------RRSYIERIKEITKNSRKVDTDIERILKE  403 (762)
Q Consensus       333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~---L~~~~~~~~k~~~------R~~Yt~RI~Eiv~nirKQ~~eI~Kil~d  403 (762)
                      +..+.+++.++++++.+....+..+..+..   -..+++.+|.|..      |-..-.=.-|+++|+.|..+-|.   .+
T Consensus        10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie---~~   86 (121)
T PRK09343         10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE---LR   86 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH---HH
Confidence            334555666666666666666655555444   4556777776532      11122233467777777777666   88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041515          404 TRELQLESNSIQERLHRTYAVVDDMIFREAK  434 (762)
Q Consensus       404 tr~lqkein~~~~~l~Rtf~v~delif~~ak  434 (762)
                      ++.+.|+...+..++...-.-+.+++=...+
T Consensus        87 ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~  117 (121)
T PRK09343         87 SRTLEKQEKKLREKLKELQAKINEMLSKYYP  117 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8889999999988888888877777765554

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=83.35  E-value=1.9  Score=39.12  Aligned_cols=44  Identities=18%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515          683 IPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPG  729 (762)
Q Consensus       683 l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~  729 (762)
                      ++||.+.++.++..++  +++....++...++.+ ++++.++.+..+
T Consensus         1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   44 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP   44 (126)
T ss_pred             ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc
Confidence            4678889998888764  9999999999999988 766666665543

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.64  E-value=18  Score=38.39  Aligned_cols=46  Identities=22%  Similarity=0.138  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN  328 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~  328 (762)
                      -..+.+......+..++..+...+|.+-+..|.++|+.++.+...-
T Consensus        23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L   68 (251)
T PF11932_consen   23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENL   68 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666667777788899999999999999999999999876544

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily

Probab=82.42  E-value=88  Score=34.85  Aligned_cols=82  Identities=20%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCccchHHHHHHHHHHhhHHHHHH
Q 041515          379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIF--REAKKDQSFEQVSEKILATDRVRREI  456 (762)
Q Consensus       379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif--~~akkd~~~~~l~~~i~~tg~~~rei  456 (762)
                      ..+.+++=+..|++++..+...|.+...    -..+..++-......+. +|  .--|.|+....|-+.+.....+..+|
T Consensus       196 ~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~----~DDI~~~ll~~~~~~e~-lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i  270 (339)
T cd09238         196 TLRSNLEELEALGNERAGIEDMMKALKR----NDNILAKVMATTGSYDA-LFKEELKKYDSVREAVSKNISSQDDLLSRL  270 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCcHHHHHHhhhhhHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            6777888888888898888888877555    23445555555434344 45  33456888999999999999999999


Q ss_pred             HHHHHHHHH
Q 041515          457 AEYEKKLAA  465 (762)
Q Consensus       457 ~~le~qi~~  465 (762)
                      ++...+...
T Consensus       271 ~~~n~~f~~  279 (339)
T cd09238         271 RALNEKFSQ  279 (339)
T ss_pred             HHHHHHHHH
Confidence            988877654

This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=82.37  E-value=1.2e+02  Score=36.24  Aligned_cols=168  Identities=17%  Similarity=0.097  Sum_probs=97.6

Q ss_pred             HHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 041515          249 EAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN  328 (762)
Q Consensus       249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~  328 (762)
                      +++...+.+..|..++...++-.++.+.. .+|.+.--+.|+......+ +..+|...|.....-|..+-..  ......
T Consensus       171 ~~l~~~~~~~~e~~~~~d~L~fq~~Ele~-~~l~~gE~e~L~~e~~rLs-n~ekl~~~~~~a~~~L~ge~~~--~~~~~~  246 (557)
T COG0497         171 RELEDLQEKERERAQRADLLQFQLEELEE-LNLQPGEDEELEEERKRLS-NSEKLAEAIQNALELLSGEDDT--VSALSL  246 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhCCCCc--hhHHHH
Confidence            44444444555566666666655665555 2222333445544333322 3455666665555555421000  001111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhcCCCccChHHHH-HHHHHHHhhhhhhHHhHHHHHHH
Q 041515          329 ELEAQAKLLKLREVELERQSVLSEIR----KREDEYSKLSADLEKQPKVASRRSYI-ERIKEITKNSRKVDTDIERILKE  403 (762)
Q Consensus       329 ~~e~~~k~~~ik~~~~~~~~~~~e~~----~k~e~~~~L~~~~~~~~k~~~R~~Yt-~RI~Eiv~nirKQ~~eI~Kil~d  403 (762)
                      ...+...+..+.++..+.+.+.+.+.    .-++...+|...++.++-|.+|=.++ .|+..+-.-.||=...++-++.-
T Consensus       247 l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~  326 (557)
T COG0497         247 LGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEY  326 (557)
T ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            12222333334444444444433333    23566777888888999998888855 89999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 041515          404 TRELQLESNSIQERLHR  420 (762)
Q Consensus       404 tr~lqkein~~~~~l~R  420 (762)
                      ...++.|++.+.+.-+.
T Consensus       327 ~~~~~~el~~L~~~~~~  343 (557)
T COG0497         327 LDKIKEELAQLDNSEES  343 (557)
T ss_pred             HHHHHHHHHHhhhhhhH
Confidence            99999888887765443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=82.33  E-value=1.2e+02  Score=36.61  Aligned_cols=28  Identities=18%  Similarity=0.315  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDAL  310 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~  310 (762)
                      +.|..+|++......+|+.+|..+-...
T Consensus        14 d~ya~~lk~e~a~~qqr~~qmseev~~L   41 (617)
T PF15070_consen   14 DQYAQQLKEESAQWQQRMQQMSEEVRTL   41 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555444333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=82.31  E-value=18  Score=38.94  Aligned_cols=32  Identities=38%  Similarity=0.518  Sum_probs=31.0

Q ss_pred             hcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515          115 NLGYIGDISYYKFLYPSEEDLYKLIRFLVERL  146 (762)
Q Consensus       115 ~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL  146 (762)
                      .|||+.-|+-.+|==||=.=+-.++.||+.+.
T Consensus         2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~ry   33 (267)
T PF10234_consen    2 ALGYPRLISMENFRTPNFELVAEILRWLVKRY   33 (267)
T ss_pred             CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHc
Confidence            58999999999999999999999999999999

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=81.83  E-value=16  Score=41.14  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 041515          271 AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVL  350 (762)
Q Consensus       271 ~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~  350 (762)
                      .-+.+++    ....+.+|...+..+-.||..-.+.-..-=.|++.+||+.+++++.-..+++.-       ...+.+..
T Consensus       232 I~~~~~~----~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~-------s~~V~~~t  300 (359)
T PF10498_consen  232 IESALPE----TKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA-------SEGVSERT  300 (359)
T ss_pred             HHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHH
Confidence            4456677    889999999999888888887766666666788888888888766543333322       22333333


Q ss_pred             HHHHhhHHHHHHHHHHHhcCCC
Q 041515          351 SEIRKREDEYSKLSADLEKQPK  372 (762)
Q Consensus       351 ~e~~~k~e~~~~L~~~~~~~~k  372 (762)
                      .++..=.+..++.+.+++....
T Consensus       301 ~~L~~IseeLe~vK~emeerg~  322 (359)
T PF10498_consen  301 RELAEISEELEQVKQEMEERGS  322 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            3333334444444445544433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=81.73  E-value=12  Score=38.97  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515          344 LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQE  416 (762)
Q Consensus       344 ~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~  416 (762)
                      ++.+.+.+|++++....++..++.+                ++.|.++.=..|+++.++|-..||++++.-++
T Consensus       158 ~~~~kL~~el~~~~~~Le~~~~~~~----------------al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~  214 (216)
T KOG1962|consen  158 ADLEKLETELEKKQKKLEKAQKKVD----------------ALKKQSEGLQDEYDRLLEEYSKLQEQIESGGK  214 (216)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence            3444455555555555555544443                44555566677889999999999999886543

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=81.29  E-value=11  Score=46.41  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHhhhhhcccCcHHHHHHHHHHHH
Q 041515          242 NRDESLMEAVTAKTSELCDPEEEYQLLKAAAE  273 (762)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e  273 (762)
                      .+.+.+.+++...+.++++.|++++..++...
T Consensus       267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~  298 (726)
T PRK09841        267 QSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD  298 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33555567777777777778888777776543

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=81.16  E-value=1.3e+02  Score=37.57  Aligned_cols=14  Identities=7%  Similarity=0.147  Sum_probs=6.7

Q ss_pred             CchhHHHHHHHHHH
Q 041515          555 FNFPIFLTVIHYAV  568 (762)
Q Consensus       555 F~~Pl~Lt~~q~l~  568 (762)
                      .+.|++++.+.+++
T Consensus        38 Ls~~~v~Ll~Giil   51 (810)
T TIGR00844        38 IGESMVASIFGLIV   51 (810)
T ss_pred             CcHHHHHHHHHHHh
Confidence            44555555444443

This model is specific for the fungal members of this family.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.06  E-value=1.3e+02  Score=35.77  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=55.0

Q ss_pred             HHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHhcCCC--CCCc
Q 041515           46 VILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYI--GDIS  123 (762)
Q Consensus        46 ~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~~Gy~--~dig  123 (762)
                      +.|..=|-.-|.+=|-.+..+..=++..+..+--=...-.||++++|        +  |.=..+.+..|++||+  +.++
T Consensus        77 ~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~--------~--r~EeEV~~ilK~L~YPf~~siS  146 (581)
T KOG0995|consen   77 RQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFP--------E--RIEEEVVQILKNLKYPFLLSIS  146 (581)
T ss_pred             HHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccc--------h--hHHHHHHHHHHhCCCCcccchh
Confidence            45667777778774433344433333333332223334568888887        2  4567899999999998  5555


Q ss_pred             ccc-cccC-ChHHHHHHHHHHHHHh
Q 041515          124 YYK-FLYP-SEEDLYKLIRFLVERL  146 (762)
Q Consensus       124 y~t-fLY~-~~~dlr~l~~fLiekL  146 (762)
                      |+. ---| |=+-+=..+-|||+-.
T Consensus       147 s~~a~gspH~WP~iL~mlhWlvdlI  171 (581)
T KOG0995|consen  147 SLQAAGSPHNWPHILGMLHWLVDLI  171 (581)
T ss_pred             hhccCCCCCccHHHHHHHHHHHHHH
Confidence            322 1111 2266777888888755

>PRK09039 hypothetical protein; Validated

Probab=81.02  E-value=99  Score=34.56  Aligned_cols=83  Identities=14%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHH
Q 041515          381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYE  460 (762)
Q Consensus       381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le  460 (762)
                      .|.-+.-..+.-++..+..-..++.-|+.||..+.+++.+.=+.+|+.-=++                 ......|.+|+
T Consensus       116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~-----------------~~~~~~i~~L~  178 (343)
T PRK09039        116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD-----------------RESQAKIADLG  178 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence            4455555778888888888888999999999999888665544444432222                 22334455555


Q ss_pred             HHHHHHhcc-ccchhhhhhhH
Q 041515          461 KKLAAVASR-SLNVDKLQADV  480 (762)
Q Consensus       461 ~qi~~~~~k-~~nle~i~~D~  480 (762)
                      ..|...-.+ ..+|++...++
T Consensus       179 ~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        179 RRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH
Confidence            555555433 35666666666

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=80.84  E-value=39  Score=37.32  Aligned_cols=133  Identities=17%  Similarity=0.251  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH---HHHHHHHHhh----------c--hHHHHHHHHHHHHHHHHHHHH
Q 041515          285 YLEQLDEQVGAKKHNLVELELQWDALKESLEEK---KRSLEESLYA----------N--ELEAQAKLLKLREVELERQSV  349 (762)
Q Consensus       285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~---~~~l~~~~~~----------~--~~e~~~k~~~ik~~~~~~~~~  349 (762)
                      +=..|...+..+.++...|..+-+..|..+-+-   ..-|++.+..          +  ..|-..-+.+++.++.+.+++
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            444444445555555555555555555444221   1112222221          1  134444577888888899999


Q ss_pred             HHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHH-------HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH-------
Q 041515          350 LSEIRKREDEYSKLSADLEKQPKVASRRSYIERI-------KEITKNSRKVDTDIERILKETRELQLESNSIQ-------  415 (762)
Q Consensus       350 ~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI-------~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~-------  415 (762)
                      ..+++.-.++.+.+..|         |..|-.+.       .-+++.=..-=-||+..+.|.|.|+..++.++       
T Consensus       146 e~d~qs~lDEkeEl~~E---------RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k  216 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTE---------RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK  216 (319)
T ss_pred             HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888888777777665         44443221       12222222222356666666666555554444       


Q ss_pred             HHHHHHHHHHH
Q 041515          416 ERLHRTYAVVD  426 (762)
Q Consensus       416 ~~l~Rtf~v~d  426 (762)
                      ..+.+..+.+|
T Consensus       217 ~~i~KYK~~le  227 (319)
T PF09789_consen  217 QTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHH
Confidence            44555555555

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=80.83  E-value=9  Score=33.00  Aligned_cols=54  Identities=9%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHH
Q 041515          344 LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIE  398 (762)
Q Consensus       344 ~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~  398 (762)
                      ..++.+...+..-++++.++.-|+..+|. ..|..|..|+.+.-..+.+=+.++.
T Consensus        25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-s~r~~~~~kl~~yr~~l~~lk~~l~   78 (79)
T PF05008_consen   25 SLIREIERDLDEAEELLKQMELEVRSLPP-SERNQYKSKLRSYRSELKKLKKELK   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTS-H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35677777888888999999999999977 5589999998887777776666654

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=80.68  E-value=1.7e+02  Score=37.13  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          341 EVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR  420 (762)
Q Consensus       341 ~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R  420 (762)
                      .++.++..++.++..+++...+ +.+|=+.+.  ++..=-+|+-++-++|..-+.+..+--++...++||+..++++=.+
T Consensus       266 ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke--~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~  342 (1141)
T KOG0018|consen  266 KIRRELQKVDKKISEKEEKLAE-RPELIKVKE--NASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEE  342 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hhHHhhcch--hhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666656555555 222222222  2333446788888888888888888888888888888777766544


Q ss_pred             HHH
Q 041515          421 TYA  423 (762)
Q Consensus       421 tf~  423 (762)
                      --.
T Consensus       343 fek  345 (1141)
T KOG0018|consen  343 FEK  345 (1141)
T ss_pred             HHH
Confidence            333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=80.54  E-value=1.8e+02  Score=37.12  Aligned_cols=11  Identities=36%  Similarity=0.495  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHh
Q 041515          316 EKKRSLEESLY  326 (762)
Q Consensus       316 ~~~~~l~~~~~  326 (762)
                      ++++.+++.+.
T Consensus       483 ~~~~~~k~~L~  493 (1041)
T KOG0243|consen  483 EEKEKLKSKLQ  493 (1041)
T ss_pred             HHHHHHHHHHH
Confidence            33334443333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=80.39  E-value=1.5e+02  Score=36.06  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          404 TRELQLESNSIQERLHRTYAVVDD  427 (762)
Q Consensus       404 tr~lqkein~~~~~l~Rtf~v~de  427 (762)
                      ..-||-|.+.++.++.|--...+.
T Consensus       277 v~~LqeE~e~Lqskl~~~~~l~~~  300 (716)
T KOG4593|consen  277 VGLLQEELEGLQSKLGRLEKLQST  300 (716)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777776555443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=80.33  E-value=1.5e+02  Score=37.67  Aligned_cols=33  Identities=12%  Similarity=0.268  Sum_probs=17.9

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESL  314 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl  314 (762)
                      .+.-++++...+.+.++.+..+....++.-..+
T Consensus       225 vE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei  257 (1141)
T KOG0018|consen  225 VEACIEKANDELSRLNAEIPKLKERMDKKEREI  257 (1141)
T ss_pred             hhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHH
Confidence            355566666666555555555555544444333

>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates

Probab=80.18  E-value=7.5  Score=39.49  Aligned_cols=96  Identities=15%  Similarity=0.250  Sum_probs=82.4

Q ss_pred             HHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCC----CCCCCChhHHHHHHhhHHHHHHHHhcCCCCC
Q 041515           46 VILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMT----FGTSLPHSMAEKFKICTDISSAIKNLGYIGD  121 (762)
Q Consensus        46 ~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~----l~~~lP~~msaRfr~~~~lA~a~k~~Gy~~d  121 (762)
                      ..|++.|--+||==+ =|.+|+.|  +.||-+++-||..++.+.+    +.-..  +|-+|...|..|..+++++|.+-.
T Consensus         3 ~~I~~~L~~aGY~Ra-Rv~~Ls~f--DkivGGi~W~i~~~~~~v~~dllf~E~~--~i~~Ki~~~ekIv~~L~~m~CP~~   77 (182)
T PF09762_consen    3 QEILDLLSAAGYHRA-RVKSLSPF--DKIVGGITWCITRCNVDVDVDLLFQENS--TIGQKIALCEKIVEALPKMKCPHR   77 (182)
T ss_pred             HHHHHHHHHcCccHH-HhcCCChH--HHHHhHHHHHHHhcCCCCCccchhcccc--cHHHHHHHHHHHHHHHHhCCCCCC
Confidence            357888888998774 46788777  4799999999999976655    22223  999999999999999999999999


Q ss_pred             CcccccccCChHHHHHHHHHHHHHh
Q 041515          122 ISYYKFLYPSEEDLYKLIRFLVERL  146 (762)
Q Consensus       122 igy~tfLY~~~~dlr~l~~fLiekL  146 (762)
                      +.=|.++==+-.-+..++-||+++.
T Consensus        78 l~phQi~glDf~~i~PVvqWLvkr~  102 (182)
T PF09762_consen   78 LEPHQIQGLDFIHIFPVVQWLVKRV  102 (182)
T ss_pred             CCHHHHhcCCHHHHHHHHHHHHHHH
Confidence            9999999888899999999999998

It includes Drosophila fidipidine, whose function is unknown.

>TIGR01069 mutS2 MutS2 family protein

Probab=80.16  E-value=20  Score=44.34  Aligned_cols=6  Identities=17%  Similarity=0.263  Sum_probs=2.3

Q ss_pred             hcCCCC
Q 041515          115 NLGYIG  120 (762)
Q Consensus       115 ~~Gy~~  120 (762)
                      +-|...
T Consensus       136 ~~g~i~  141 (771)
T TIGR01069       136 DDGKVK  141 (771)
T ss_pred             CCCEEC
Confidence            334333

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.14  E-value=65  Score=34.40  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515          283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK  317 (762)
Q Consensus       283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~  317 (762)
                      .....+++..+...+.++..|..+.+..+..+.++
T Consensus        55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~   89 (302)
T PF10186_consen   55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQK   89 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666665555555544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	762
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	9e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	2e-04
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	5e-04
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 7e-11
 Identities = 85/572 (14%), Positives = 170/572 (29%), Gaps = 163/572 (28%)

Query: 16  PLH-DSRNKAKARRTRKQERRKTQSKMEE---SEVILLNSLKSGGVSIPADVSSIKDLTS 71
            L+ D++  AK   +R Q   K +  + E   ++ +L++ +   G +          +  
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---------VAL 168

Query: 72  ETLVSICGQSLNLIFNT--MTFGT-SLPHSMAEKF-KICTDISSAIKNLGYIGDISYYKF 127
           +  +S       + F    +     + P ++ E   K+   I     N     D S    
Sbjct: 169 DVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSS-NI 223

Query: 128 LYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQ-KI- 185
                    +L R L  +       + V      +V+   N            +   KI 
Sbjct: 224 KLRIHSIQAELRRLLKSK--PYENCLLVLL----NVQ---NAKAWNA-----FNLSCKIL 269

Query: 186 ---RDQ--------LEECRLENELPQSSNSEDVASD---SVSSSRVQDYNKNDVTG---- 227
              R +             +  +    + + D            R QD  +  +T     
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 228 --VIRGKIKNHADNLQNRDESLMEAVTAKTSELC----DPEEEYQLLKAAAEMAF-DDSH 280
             +I   I++      N      + +T    E      +P E  ++    +   F   +H
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLS--VFPPSAH 386

Query: 281 -PTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK------KRSLEE--------SL 325
            P           +         L L W  + +S          K SL E        S+
Sbjct: 387 IP---------TIL---------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 326 YANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSA-DLEKQPKVASRR---SYIE 381
            +  LE + KL    E  L R  V        D Y+     D +        +   S+I 
Sbjct: 429 PSIYLELKVKLEN--EYALHRSIV--------DHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 382 R-IKEITKNSRKVDTDIERILKETRELQLESNSIQERL-HRTYA------VVDDMI-FRE 432
             +K I ++  ++           R + L+   +++++ H + A      +++ +   + 
Sbjct: 479 HHLKNI-EHPERMT--------LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 433 AKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQ 492
            K       + +     +R+   I ++  K+      S   D L+               
Sbjct: 530 YKP-----YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR--------------- 569

Query: 493 QFHRDGRALEEIRGALYNEIRTSDGAKRQQQK 524
                  AL     A++ E      A +Q Q+
Sbjct: 570 ------IALMAEDEAIFEE------AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 71/459 (15%), Positives = 138/459 (30%), Gaps = 115/459 (25%)

Query: 217 VQDYNKNDVTGVIRGKIKN----HADNLQNRDES---LMEAVTAKTSELCDP------EE 263
           V +++  DV  + +  +      H    ++       L   + +K  E+           
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 264 EYQLLKAA-AEMAFDDSHPTEFYLEQLDEQVGA----KKHNLVELELQWDALKESLEEKK 318
            Y+ L +         S  T  Y+EQ D          K+N+  L+     L+++L E +
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELR 148

Query: 319 RSLEESLYA------NELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372
            +    +          +            +++         K + +   L+        
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDV----CLSYKVQ--------CKMDFKIFWLN-------- 188

Query: 373 VASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL-----HRTYA---- 423
           + +  S    ++ + K   ++D +       +  ++L  +SIQ  L      + Y     
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 424 VVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQAD-VDV 482
           V+ ++  + AK   +F  +S KIL T R                       K   D +  
Sbjct: 249 VLLNV--QNAKAWNAFN-LSCKILLTTR----------------------FKQVTDFLSA 283

Query: 483 IMKENEFLEQQFHRDGRALEEIRG--ALYNEIRTSDGAKRQQQKICGP-VVAM------- 532
               +  L+   H      +E++     Y + R  D   R+      P  +++       
Sbjct: 284 ATTTHISLDH--HSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTT-NPRRLSIIAESIRD 339

Query: 533 ---TFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAI 589
              T++    V       ++           L V+  A       +F   S+ P S   I
Sbjct: 340 GLATWDNWKHVNCDKLTTII--------ESSLNVLEPA---EYRKMFDRLSVFPPSAH-I 387

Query: 590 TTPFSSLFALG----VVMSFATGLANTSL--KHNSVGFY 622
            T   SL         VM     L   SL  K       
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 64/454 (14%), Positives = 127/454 (27%), Gaps = 135/454 (29%)

Query: 352 EIRKREDEYSKLSADLEKQPKVASRRSYIERI--KEITKNSRKV--DTDIERILKETREL 407
           E  + + +Y  + +  E         ++++    K++    + +    +I+ I+     +
Sbjct: 10  ETGEHQYQYKDILSVFED--------AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 408 QLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATD------RVRREIAEYEK 461
                        T  +         K+++  ++  E++L  +       ++    E  +
Sbjct: 62  S-----------GTLRLFW--TLLS-KQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQ 104

Query: 462 KLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIR-----------GA--- 507
                       D+L  D  V  K N    Q + +  +AL E+R           G+   
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 508 ---------------LYNEI--------RTSDGAKRQQQKICGPVVAMTFNFVVSVGIIL 544
                          +  +I         + +      QK+      +  N+        
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSS 221

Query: 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILL------AIFKAFS----IIPVSPPAITTPFS 594
             KL +  +       L    Y    ++L        + AF+    I+      +TT F 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL------LTTRFK 275

Query: 595 SLFALGVVMSFATGLANT--SLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLA 652
                  V  F +    T  SL H+S+          TP  V +   L        K L 
Sbjct: 276 Q------VTDFLSAATTTHISLDHHSMTL--------TPDEVKS---LLL------KYLD 312

Query: 653 LAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKT-- 710
                +   V T      +I    I              W N +         ++  +  
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESI--------RDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 711 --TPVTV---FFLLALMPWLD---PPGVLFYKWN 736
              P      F  L++ P      P  +L   W 
Sbjct: 365 VLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWF 397

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 53/422 (12%), Positives = 126/422 (29%), Gaps = 98/422 (23%)

Query: 330 LEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYI--------- 380
            +A       ++V+   +S+LS   K E +       +       S    +         
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILS---KEEID------HIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 381 ERIKEITKNSRKVDTD--IERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS 438
           E +++  +   +++    +  I  E R+  + +    E+  R Y            + Q 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 439 FEQVSEKILATDRVRREIAEYEKK------LAAVASRS-------------LNVDKLQAD 479
           + ++ +  L   R  + +            +A     S             LN+    + 
Sbjct: 137 YLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 480 VDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQK-------------IC 526
             V+    + L  Q   +  +  +    +   I +     R+  K             + 
Sbjct: 196 ETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 527 GPVVAMTFNFVVSVGIILT--NKLVMGQVGFNFPIFLTVIHYAVAWI---LLAIF-KAFS 580
                  FN   S  I+LT   K V   +       +++ H+++      + ++  K   
Sbjct: 255 NAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 581 IIPVS-PPAITTPFSSLFALGVVMSFATGLANTS--LKHNSVGFYQMSKIAVTPTIVLAE 637
             P   P  + T  ++   L ++         T    KH  V   +++ I       +  
Sbjct: 313 CRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTI-------IES 361

Query: 638 FILFSKTISYKKVL-ALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQ 696
            +   +   Y+K+   L++                           IP+ +  ++W ++ 
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAH---------------------IPTILLSLIWFDVI 400

Query: 697 QQ 698
           + 
Sbjct: 401 KS 402

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 49/286 (17%), Positives = 113/286 (39%), Gaps = 23/286 (8%)

Query: 262  EEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKES---LEEKK 318
             EE  LL+   +   +     E    +L  +    +  L E+E + +  +E    L+ +K
Sbjct: 891  CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950

Query: 319  RSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLS---ADLEKQPKVAS 375
            + +++ +   E + + +    ++++LE+ +   +I+K ED+   +      L K+ K+  
Sbjct: 951  KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 376  RR---------SYIERIKEITKNSRKVDT---DIERILKETRELQLESNSIQERLHRTYA 423
             R            E+ K +TK   K ++   ++E  LK+  + + E   I+ +L    +
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 424  VVDDMIFREAKKDQSFEQ-----VSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQA 478
             + + I     +    +        E   A  R+  E ++    L  +     ++  LQ 
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 479  DVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQK 524
            D++         E+Q       LE ++  L + + T+   +  +  
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 33/237 (13%)

Query: 230  RGKIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQL 289
            R K++        + + + + +     +     +E +LL+        +       L + 
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN-------LAEE 1023

Query: 290  DEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN-ELEAQAKLL--KLREVELER 346
            +E+         + E     L+  L+++++S +E      +LE ++  L  ++ E++ + 
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 347  QSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE 406
              + +++ K+E+E     A LE +                        +     LK+ RE
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDE-----------------------TSQKNNALKKIRE 1120

Query: 407  LQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKL 463
            L+   + +QE L    A  +    ++    +  E +  ++  T        E     
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 38/236 (16%), Positives = 82/236 (34%), Gaps = 25/236 (10%)

Query: 232  KIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDE 291
            K++    +L+ + E    A      E    + + + ++    +  D ++      + L+E
Sbjct: 952  KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 292  QVGAKKHNLVELE---LQWDALKESLEEKKRSLEESL------------YANELEAQAKL 336
            +V     NL E E        LK   E     LE  L               +LE ++  
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 337  L--KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASR-----RSYIERIKEITKN 389
            L  ++ E++ +   + +++ K+E+E     A LE +    +      R     I ++ ++
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 390  SRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEK 445
                     +  K+ R+L  E  +++  L  T               +      +K
Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK---DDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 19/206 (9%)

Query: 296  KKHNLVELELQWDALKESLEEKKRSLEESLYA------NELEAQAKLL--KLREVELERQ 347
                +V L+  +  +    E KK  +E             LE +   L  K+ E   E +
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945

Query: 348  SVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETREL 407
            S+L ++   E  YS  +  L     V   R   E  K  T     +  +I ++ KE  + 
Sbjct: 946  SLLEKMNNLEITYSTETEKLRS--DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003

Query: 408  QLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVA 467
            Q E  +I+E   +     + ++    +++   +   E++       R I +  K++    
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL------NRRIHDQAKEITETM 1057

Query: 468  SRSLNVDKLQADVDVIMKENEFLEQQ 493
             + L  +  Q ++D+    +E L  Q
Sbjct: 1058 EKKLVEETKQLELDL---NDERLRYQ 1080

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 43/272 (15%), Positives = 106/272 (38%), Gaps = 17/272 (6%)

Query: 248 MEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQW 307
           M+A+  K   L   + + +     A+ A  D    E   +QL++++ + +  L   E + 
Sbjct: 1   MDAIKKKMQML---KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57

Query: 308 DALKESLEEKKRSLEES------LYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS 361
           D   E+L++ +  LE +        A+      ++    E     Q  L+   ++ +E  
Sbjct: 58  DKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117

Query: 362 KLSADLEKQPKVASRRS--YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419
           K + + E+  KV   R+    E+++      ++     E   ++  E+  +   I+  L 
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 420 RTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQAD 479
           R     +    + A+ ++  + V+  +     +  +  +Y +K          +  L   
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNL---KSLEAQAEKYSQKEDKYEEE---IKVLSDK 231

Query: 480 VDVIMKENEFLEQQFHRDGRALEEIRGALYNE 511
           +       EF E+   +  ++++++   LY +
Sbjct: 232 LKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 40/274 (14%), Positives = 103/274 (37%), Gaps = 14/274 (5%)

Query: 232 KIKNHADNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDE 291
           + +      ++R + L + + +   +L   E+E      A + A +     E      + 
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 292 QVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLS 351
            V +    +   E + D  +E L    + LE      E E  A      E E   + + S
Sbjct: 84  DVASLNRRIQLFEEELDRAQERLATALQKLE------EAEKAAD-----ESERGMKVIES 132

Query: 352 EIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLES 411
             +K E++       L++   +A       + +E+ +    +++D+ER  +     + + 
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDAD--RKYEEVARKLVIIESDLERAEERAELSEGKC 190

Query: 412 NSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKI-LATDRVRREIAEYEKKLAAVASRS 470
             ++E +      +  +  +  K  Q  ++  E+I + +D+++      E    +V    
Sbjct: 191 AELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 250

Query: 471 LNVDKLQADVDVIMKENEFLEQQFHRDGRALEEI 504
            ++D L+ ++     + + + ++       +  I
Sbjct: 251 KSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 48.2 bits (113), Expect = 9e-06
 Identities = 33/295 (11%), Positives = 74/295 (25%), Gaps = 14/295 (4%)

Query: 245 ESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELE 304
           E   + +TA  + L   ++E +  +  A      +       E   + + A   +  ++ 
Sbjct: 49  EKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADIT 108

Query: 305 LQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLS 364
            Q   L ++   +     E    + L    +   L       +    E R   ++  K  
Sbjct: 109 RQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQ 168

Query: 365 ADLEK-------------QPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLES 411
            D +              + K        E  K        +D    R+L +        
Sbjct: 169 KDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRNDRAI 228

Query: 412 NSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKL-AAVASRS 470
           +  + +L      ++       + +Q   Q          V  E          ++    
Sbjct: 229 SEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSG 288

Query: 471 LNVDKLQADVDVIMKENEFLEQQFHRDGRALEEIRGALYNEIRTSDGAKRQQQKI 525
                    +      +      +      L+  R  L +            +KI
Sbjct: 289 DPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKI 343

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 20/239 (8%)

Query: 182 HQKIRDQLEECRLENELPQSSNSEDVASDSVSSSRVQDYNKNDVTGV----IRGKIKNHA 237
           H+     +       E+ + +  +           V   N   V+ V    +    +   
Sbjct: 592 HKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTR 651

Query: 238 DNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKK 297
           D LQ   +  +E  T         E +    +A   +            +++ +Q  A+K
Sbjct: 652 DALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE----------RQKILDQSEAEK 701

Query: 298 HNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEI---- 353
                LEL+  ++        ++  ES            +   +++ +  ++ +E     
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761

Query: 354 --RKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLE 410
             + RE E     A LE +   A + + +E  K            I  +     E+Q++
Sbjct: 762 VKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 29/187 (15%)

Query: 245 ESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELE 304
           E L++       E+   ++ YQ +K + E         E         +G +   L  L+
Sbjct: 36  EQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPE------YLLLGQR---LEGLD 86

Query: 305 LQWDALKESLEEKKRSLEESLYANELEAQAKL----LKLREVELERQSV---LSEIRKRE 357
             WDAL    E +  +L + L   E +  AK     L  +E  L        L       
Sbjct: 87  TGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGI 146

Query: 358 DEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKV----DTDIERILKETRELQLESNS 413
            ++      +E            +++     +  K+    +   ++I ++ + ++     
Sbjct: 147 RKFEDFLGSMENN---------RDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRK 197

Query: 414 IQERLHR 420
             E+   
Sbjct: 198 NNEKAQE 204

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 23/190 (12%)

Query: 245 ESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELE 304
           ++L +      +EL   E   Q +    +   DD+   +  ++Q           L +  
Sbjct: 145 QNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQR----------LAQFV 194

Query: 305 LQWDALKESLEEKKRSLEESLYANELEAQAKLLK--LREVELERQSVLSEIRKREDEYSK 362
             W  LK+    + + LEESL   +  A  +  +  + E      S   +          
Sbjct: 195 DHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVAS--EDYGDTLAAIQG 252

Query: 363 LSADLEK-QPKVASRRSYIERIKEITK--------NSRKVDTDIERILKETRELQLESNS 413
           L    E  +      +  +  +    +        +   +   ++ +  +  +L+  +  
Sbjct: 253 LLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQ 312

Query: 414 IQERLHRTYA 423
            + +L    A
Sbjct: 313 RKAKLDENSA 322

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 41/290 (14%), Positives = 94/290 (32%), Gaps = 36/290 (12%)

Query: 245 ESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELE 304
             +++    +   + D     + L + A+      HP         EQ+        +++
Sbjct: 40  IVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEG-------EQIIRL---QGQVD 89

Query: 305 LQWDALKESLEEKKRSLEESL----YANELEAQAKLLKLREVELERQSV---LSEIRKRE 357
             +  LK+  EE+KR LE          E +   + +  +E+      +      +    
Sbjct: 90  KHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLR 149

Query: 358 DEYSKLSADLEK--QPKVASRRSYIERI--------KEITKNSRKVDTDIERILK--ETR 405
           D++   + +     Q +V +  ++IER+          I +    ++     +L+  +TR
Sbjct: 150 DKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTR 209

Query: 406 ELQLESNSIQERLHRTYAVVDDMI---FREAKKD--QSFEQVSEKILATDRVRREIAEYE 460
              L ++    R   T A +  +I    RE  +D                   R++    
Sbjct: 210 MQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLG 269

Query: 461 KKLAAVASRSLNVDKLQA--DVDVIMKENEFLEQQFHRDGRALEEIRGAL 508
            ++      +  +    A    + I  + + +   +     A    R  L
Sbjct: 270 VQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	762
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.24
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.23
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.8
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.9
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.48
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.02
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.56
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.4
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.65
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.65
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	92.4
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	92.22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	91.67
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.21
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	86.7
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.82
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	85.56
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	84.2
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	82.82
1vcs_A	102	Vesicle transport through interaction with T- snar	82.61
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	81.83
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	81.2
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	80.89
2qyw_A	102	Vesicle transport through interaction with T-SNAR	80.54
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	80.47
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	80.07

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.24  E-value=0.00042  Score=65.50  Aligned_cols=66  Identities=12%  Similarity=0.200  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhhhcchhHHHHHH-HhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515          600 GVVMSFATGLANTSLKHNSVGFYQMS-KIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT  666 (762)
Q Consensus       600 gl~~~l~i~l~N~SL~yvsVs~~qml-Ksas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~  666 (762)
                      .++++++..+.+.++++++++....+ . ...|++ +++++++|||++++.++++++++++||++....
T Consensus        37 i~~~~ls~~l~~~alk~i~~s~ay~iw~-~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWS-GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHC-----CHHHHHH-HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34577888999999999999976666 6 468875 788999999999999999999999999987653

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.23  E-value=0.00083  Score=60.96  Aligned_cols=68  Identities=12%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhhhhcchhHHHHHH-HhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC
Q 041515          599 LGVVMSFATGLANTSLKHNSVGFYQMS-KIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD  667 (762)
Q Consensus       599 lgl~~~l~i~l~N~SL~yvsVs~~qml-Ksas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d  667 (762)
                      ..++++++..+.+.++++.|+|..-.+ .+ ..|+. +++++++|||++++.++++++++++|+++....+
T Consensus        36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g-~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSG-VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhHHHHHhh-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344577888899999999999998777 64 67865 7889999999999999999999999999876543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.80  E-value=0.0012  Score=82.72  Aligned_cols=10  Identities=30%  Similarity=0.776  Sum_probs=4.5

Q ss_pred             CCCCCCcccc
Q 041515          117 GYIGDISYYK  126 (762)
Q Consensus       117 Gy~~digy~t  126 (762)
                      ||-|++-|.+
T Consensus       584 Hyag~V~Y~~  593 (1184)
T 1i84_S          584 HYAGKVTYNA  593 (1184)
T ss_dssp             CSSCEEEEEC
T ss_pred             CCCceEEecc
Confidence            3444444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.90  E-value=0.0057  Score=76.57  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515          286 LEQLDEQVGAKKHNLVELELQWDALKESL  314 (762)
Q Consensus       286 ~~kL~~~~~~~~~~l~~L~~qWe~~r~pl  314 (762)
                      +++++..+.....++..|..+.++.+..+
T Consensus       873 L~~le~~l~ele~~l~~Le~e~~~l~~~L  901 (1184)
T 1i84_S          873 QQKAEAELKELEQKHTQLCEEKNLLQEKL  901 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.83  E-value=1.7  Score=43.24  Aligned_cols=17  Identities=6%  Similarity=0.165  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHhhHHHHH
Q 041515          287 EQLDEQVGAKKHNLVEL  303 (762)
Q Consensus       287 ~kL~~~~~~~~~~l~~L  303 (762)
                      .+++..+.....++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~   95 (284)
T 1c1g_A           79 TDAEADVASLNRRIQLF   95 (284)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.48  E-value=0.29  Score=56.11  Aligned_cols=43  Identities=9%  Similarity=0.096  Sum_probs=30.9

Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYA  423 (762)
Q Consensus       381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~  423 (762)
                      +.+.++-+.+++|++.+..+-+|+-.+..|+..+.++++|.|.
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~  586 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD  586 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3455666777778888888888888888888888888888875

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.02  E-value=0.44  Score=58.97  Aligned_cols=25  Identities=8%  Similarity=0.145  Sum_probs=16.3

Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHH
Q 041515          381 ERIKEITKNSRKVDTDIERILKETR  405 (762)
Q Consensus       381 ~RI~Eiv~nirKQ~~eI~Kil~dtr  405 (762)
                      .+.-|-+++++|+++.....+.|..
T Consensus      1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555777777777766666666655

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.56  E-value=0.2  Score=56.01  Aligned_cols=103  Identities=12%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH-hhHHHHHHHHHHHHH
Q 041515          385 EITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILA-TDRVRREIAEYEKKL  463 (762)
Q Consensus       385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~-tg~~~rei~~le~qi  463 (762)
                      +|-+.|-||+.|+.++++|.|..=.+++......+..|..+.|.+-++.+....-..   .+-+ +..++|.|..|+.+|
T Consensus        50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN---tynE~S~ELRRrIqyLKekV  126 (562)
T 3ghg_A           50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN---TYNRVSEDLRSRIEVLKRKV  126 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH---HHHHTTHHHHHHHHHHHHHH
T ss_pred             chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch---hHHHHHHHHHHHHHHHHHHH
Confidence            466788999999999999999988888777777777777777776555443221111   1111 113344444444444


Q ss_pred             HHHhccccchhhhhhhHHHHHHHhhhhhhh
Q 041515          464 AAVASRSLNVDKLQADVDVIMKENEFLEQQ  493 (762)
Q Consensus       464 ~~~~~k~~nle~i~~D~~~i~~en~~~~s~  493 (762)
                      +..-   .|+.-|++.++.++.+..+||.|
T Consensus       127 dnQl---snIrvLQsnLedq~~kIQRLEvD  153 (562)
T 3ghg_A          127 IEKV---QHIQLLQKNVRAQLVDMKRLEVD  153 (562)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333   33444444444444555555554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.46  E-value=1.5  Score=45.17  Aligned_cols=32  Identities=13%  Similarity=0.050  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515          402 KETRELQLESNSIQERLHRTYAVVDDMIFREA  433 (762)
Q Consensus       402 ~dtr~lqkein~~~~~l~Rtf~v~delif~~a  433 (762)
                      .+...+.++.+.+.+.++-.---.++.+.+..
T Consensus       157 ~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~  188 (256)
T 3na7_A          157 ETQQIIFKKKEDLVEKTEPKIYSFYERIRRWA  188 (256)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence            34445556666666666666666666666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.40  E-value=0.36  Score=55.37  Aligned_cols=26  Identities=8%  Similarity=0.194  Sum_probs=11.5

Q ss_pred             HhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515          387 TKNSRKVDTDIERILKETRELQLESN  412 (762)
Q Consensus       387 v~nirKQ~~eI~Kil~dtr~lqkein  412 (762)
                      -+.+...++|+++.-.|.++++.+++
T Consensus       557 ~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          557 RAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33334444444444444444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.65  E-value=1.9  Score=58.83  Aligned_cols=50  Identities=18%  Similarity=0.466  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDM  428 (762)
Q Consensus       379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~del  428 (762)
                      --..+-++-+.|.+-+++.++...|...|+.|++..+.||+|.-..++.+
T Consensus      2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34667788888888999999999999999999999999999998887655

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.65  E-value=2.6  Score=52.17  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=16.4

Q ss_pred             hcCCCCCCcccccc------cC----ChHHHHHHHHHHHHHh
Q 041515          115 NLGYIGDISYYKFL------YP----SEEDLYKLIRFLVERL  146 (762)
Q Consensus       115 ~~Gy~~digy~tfL------Y~----~~~dlr~l~~fLiekL  146 (762)
                      ..||+--+.|+-|+      -|    .. |-+...--|++.+
T Consensus       695 r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~  735 (1080)
T 2dfs_A          695 AAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKL  735 (1080)
T ss_dssp             TTSCCEEEEHHHHHHHHTTTSCGGGCCS-SHHHHHHHHHTTT
T ss_pred             hcCCCchhhHHHHHHHHHHHCCccCCCC-ChHHHHHHHHHHh
Confidence            44666666665542      12    12 5566666666666

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=92.22  E-value=11  Score=38.48  Aligned_cols=104  Identities=8%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHH
Q 041515          316 EKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDT  395 (762)
Q Consensus       316 ~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~  395 (762)
                      .++..+++++..........-.++++++.+++....++....+.+++.+..+......--.+++.+.|-..-..+..-++
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~  111 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANR  111 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444433333333333345566666666667777666666666666666544323334455555555555555556


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 041515          396 DIERILKETRELQLESNSIQERLH  419 (762)
Q Consensus       396 eI~Kil~dtr~lqkein~~~~~l~  419 (762)
                      +|..+......+++++....+.+.
T Consensus       112 eile~~e~ie~~~~~l~~~~~~l~  135 (256)
T 3na7_A          112 EIENLQNEIKRKSEKQEDLKKEML  135 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.67  E-value=0.51  Score=52.85  Aligned_cols=54  Identities=7%  Similarity=0.003  Sum_probs=31.3

Q ss_pred             HHHHHHHHHh-hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515          379 YIERIKEITK-NSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFRE  432 (762)
Q Consensus       379 Yt~RI~Eiv~-nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~  432 (762)
                      |.+++.+=.. ...+.+.|++++-.|.+..|.+++.+.+.=+|.--+++|+--+=
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (487)
T 3oja_A          411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL  465 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence            4444444333 33334445566677777777777777777677666666654433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.21  E-value=6  Score=54.08  Aligned_cols=66  Identities=15%  Similarity=0.152  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChH
Q 041515          312 ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRR  377 (762)
Q Consensus       312 ~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~  377 (762)
                      .|+.++.+++++++...+.+..++.++|++++++++++.++.+....+.++|+.+.+...+...|.
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577777777777766555555555556677777777777776666666666777666554444443

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=86.70  E-value=3.5  Score=36.52  Aligned_cols=70  Identities=10%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515          336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE  406 (762)
Q Consensus       336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~  406 (762)
                      +..|++++.++...+..+-.-.+..+.-.+.++.=|.++|.+.|.+|--+ |+.++--=+|+.+.+.|...
T Consensus        34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~-Vsalq~KiaeLKrqLAd~va  103 (107)
T 2k48_A           34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA-VSTLETKLGELKRQLADLVA  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            55778888888888888887888888888899999999999999999754 56666666777777777655

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.82  E-value=1.7  Score=48.55  Aligned_cols=8  Identities=0%  Similarity=-0.143  Sum_probs=0.0

Q ss_pred             HHHHHHhh
Q 041515          621 FYQMSKIA  628 (762)
Q Consensus       621 ~~qmlKsa  628 (762)
                      +.++=++|
T Consensus       435 ttttr~sC  442 (562)
T 3ghg_A          435 TTTTRRSC  442 (562)
T ss_dssp             --------
T ss_pred             cceeeccc
Confidence            33444443

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=84.20  E-value=46  Score=35.27  Aligned_cols=58  Identities=14%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccc
Q 041515          380 IERIKEITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQ  437 (762)
Q Consensus       380 t~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~  437 (762)
                      ++.+.+-+..+.++=++|.+|+.-+..+=.+.|-|.          |..-|-|+|+=+=|-+-|.+..
T Consensus       131 ~~~~~~~~~~l~~~~~~I~~i~~~I~~IA~QTNLLALNAaIEAARAGE~GrGFAVVAdEVRkLAe~t~  198 (341)
T 3zx6_A          131 VDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSA  198 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence            344555666677777889999999999988988853          5566999999999998887644

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=82.82  E-value=38  Score=33.26  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhHHHHHHHhh
Q 041515          455 EIAEYEKKLAAVASRS-LNVDKLQADVDVIMKENE  488 (762)
Q Consensus       455 ei~~le~qi~~~~~k~-~nle~i~~D~~~i~~en~  488 (762)
                      ...-||..++. +..- .-++++..+++.+++|.+
T Consensus       145 r~alLE~El~E-Ke~l~~~~QRLkdE~rDLk~El~  178 (189)
T 2v71_A          145 RNAFLESELDE-KESLLVSVQRLKDEARDLRQELA  178 (189)
T ss_dssp             HHHHHHHHHHH-HHHHHCCC---------------
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555553 1111 445555555555555554

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=82.61  E-value=4.1  Score=36.07  Aligned_cols=55  Identities=18%  Similarity=0.358  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHH
Q 041515          345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERI  400 (762)
Q Consensus       345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Ki  400 (762)
                      .++++...+..-++++.|+.-|..++|- ..|+.|..|+.+--..+.+=+.|+.++
T Consensus        39 ~i~~ie~~l~EA~ell~qMelE~r~~p~-~~R~~~~~klr~Yk~dL~~lk~elk~~   93 (102)
T 1vcs_A           39 MVANVEKQLEEARELLEQMDLEVREIPP-QSRGMYSNRMRSYKQEMGKLETDFKRS   93 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777788889999999999999985 559999999988877776666665553

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B

Probab=81.83  E-value=50  Score=33.89  Aligned_cols=82  Identities=17%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccch--------HHHH
Q 041515          381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQS--------FEQV  442 (762)
Q Consensus       381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~~--------~~~l  442 (762)
                      +.+.+.+..+.+.-++|.++...++.+-.+.|-+.          |.--|-|+|+=+-|-+-|..-..        ..++
T Consensus       110 ~~~~~~~~~l~~~~~~i~~i~~~I~~Ia~qtnllALNAaIEAArAGe~GrGFaVVA~eIr~LA~~t~~~~~~i~~v~~~i  189 (309)
T 2ch7_A          110 KDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEI  189 (309)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666677777777777777777777664          44568888877777776665331        2233


Q ss_pred             HHHHHHhhHHHHHHHHHHHH
Q 041515          443 SEKILATDRVRREIAEYEKK  462 (762)
Q Consensus       443 ~~~i~~tg~~~rei~~le~q  462 (762)
                      -+..+.++....+++++=++
T Consensus       190 ~~~a~~~~~~~~~i~~~~~~  209 (309)
T 2ch7_A          190 RSIAEDAGKVSSEITARVEE  209 (309)
T ss_dssp             HHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555544333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=81.20  E-value=11  Score=34.32  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515          346 RQSVLSEIRKREDEYSKLSADLEKQ  370 (762)
Q Consensus       346 ~~~~~~e~~~k~e~~~~L~~~~~~~  370 (762)
                      +.++....+..++-|.||+..|..+
T Consensus        94 ~~e~E~kAqa~Eerf~KLKe~yteL  118 (120)
T 3i00_A           94 LSEIERKAQANEQRYSKLKEKYSEL  118 (120)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556678888887777643

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=80.89  E-value=10  Score=33.39  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=39.2

Q ss_pred             HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515          294 GAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ  370 (762)
Q Consensus       294 ~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~  370 (762)
                      ++.+.+|..|..+=+    ...++...++..+...+.+....-.+|..+..+++.+..++...++.+......++..
T Consensus         5 d~iKkKm~~lk~e~e----~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~   77 (101)
T 3u59_A            5 EAIKKKMQMLKLDKE----NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556665544332    2333444444444433344444445667777777777777766666666655555543

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=80.54  E-value=11  Score=33.33  Aligned_cols=51  Identities=10%  Similarity=0.253  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHh
Q 041515          345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTD  396 (762)
Q Consensus       345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~e  396 (762)
                      .++++...+..-++++.|+.-|..++|- ..|+.|..|+.+--..+.+=|.|
T Consensus        50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~-s~R~~~~~klr~Yk~dL~~lk~e  100 (102)
T 2qyw_A           50 LVRDFDEKQQEANETLAEMEEELRYAPL-TFRNPMMSKLRNYRKDLAKLHRE  100 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            5667777888889999999999999984 55999999998877666554444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=80.47  E-value=27  Score=32.54  Aligned_cols=34  Identities=15%  Similarity=0.089  Sum_probs=22.3

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHH--HHHHHHhhHHHH
Q 041515          282 TEFYLEQLDEQVGAKKHNLVEL--ELQWDALKESLE  315 (762)
Q Consensus       282 ~~~n~~kL~~~~~~~~~~l~~L--~~qWe~~r~pl~  315 (762)
                      .++++.++-..++.....+..-  .......|...+
T Consensus        26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVL   61 (138)
T 3hnw_A           26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDM   61 (138)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            4788888888888777666644  454555555443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=80.07  E-value=22  Score=32.11  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515          289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE  368 (762)
Q Consensus       289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~  368 (762)
                      |+..+..+.+-+.+-..||-..-...+.=..+|+++...       ...++++++.+++.+.+++++..+..++|+.+.+
T Consensus        30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq-------~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            444445555555555555555554444444444443221       1346788888999999999999999999988887


Q ss_pred             cC
Q 041515          369 KQ  370 (762)
Q Consensus       369 ~~  370 (762)
                      -+
T Consensus       103 ~~  104 (121)
T 3mq7_A          103 VL  104 (121)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	762
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	80.87

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.87  E-value=22  Score=33.18  Aligned_cols=31  Identities=13%  Similarity=-0.057  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhHHHHHHH
Q 041515          288 QLDEQVGAKKHNLVELELQWDALKESLEEKK  318 (762)
Q Consensus       288 kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~  318 (762)
                      .|...+....+....+..+|.+....+.+..
T Consensus       101 ~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~  131 (288)
T d2efla1         101 DLARYVQELKQERKSNFHDGRKAQQHIETCW  131 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444333