Citrus Sinensis ID: 041519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
Protein Sequence
TNILQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNPY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEcccccEEEccHHHHHHHHHHHHcccEEEEEcccEEEcccccccccccEEEEEccccccccccccccccccccEEEEccccccccccccHHHccccccEEEEccccccccccccccccccccEEEccccccccccccHHccccccEEEccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHEEcHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHEEEEcccccHHHccccccccccccEEEEEEccccccEccHHHHHccccEEEEEccccccHcccHHHcccHHccEEEccccccccccHHHccccccEEEEEcccccHHccccHcccHccEEEEEcccccccccccccHHHHHHHHHHHHHHcHcccccHHcccHHHHHHHHHccccccHHHHHHHHHccccccccHHHcccccHHcHccccccccccccHHHccccccccccccccHcccccccEEEEcccHcHHHccccccccHHHHEcccccccccccccccEEEEcccHcHHHccccccccccccccEEEEcccccHHccccccccHHHcccccccccEEEcccHHHHHHcccccHHHHHHcccc
Coil and Loop (DISEMBL)
tnilqvpaLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLrslndvdtkvfGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLlesakdgscvkMHDLIRDMALRITSKSPLFMVTAGLRllkfpgeqeWEENLERVSLMEndfeeipsnmsphCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIevlpnsvsdLTNLRSLLLRWCGILKRVPSLAKLLALQYLDlegtwieevPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNiyvkstdgrgsknyclllsasgkrgflevDKSVRLFACKIceteetivlpedvqylemfgvddvaslndvlpreqglnlFSLRLLPALQNLEVLAVGYCFLIEEIvavedeetekELATntiintvtlprlkklhLEDLREFKsicsdngvlvcnslqeievyncpklkrlslslplldngqpspppalEVIEIKKELWESLewdqpnakdvlnpy
Flexible Loop (DISEMBL)
tnilqvpalNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVkstdgrgsKNYCLLLSASGKRGFLEVDKSVRLFACKICEteetivlpedVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVedeetekelatntiintvtlprlKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWeslewdqpnakdvlnpy
Low Complexity Region (SEG)
TNILQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSlakllalqyldlEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFlieeivavedeetekelatNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCpklkrlslslpllDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNPY
Disordered region (IsUnstruct)
***LQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLM***F******MSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL*****************************************
Disordered Region (DISOPRED)
**ILQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRS**DVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAA**********GYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETE**********TVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNPY
Disordered Region (DISEMBL)
TNILQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNPY
Disordered Region (DISPRO)
*****VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNPY
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TNILQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	521	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.497	0.281	0.358	2e-41
Q9T048	985	Disease resistance protei	no	no	0.932	0.493	0.293	2e-36
Q42484	909	Disease resistance protei	no	no	0.892	0.511	0.259	1e-31
O82484	892	Putative disease resistan	no	no	0.460	0.269	0.323	3e-28
Q9FG91	848	Probable disease resistan	no	no	0.834	0.512	0.280	3e-28
Q940K0	889	Probable disease resistan	no	no	0.871	0.510	0.255	4e-28
Q9SI85	893	Probable disease resistan	no	no	0.844	0.492	0.282	2e-27
Q8L3R3	885	Disease resistance protei	no	no	0.489	0.288	0.325	4e-27
Q8RXS5	888	Probable disease resistan	no	no	0.921	0.540	0.274	4e-26
Q9FLB4	874	Putative disease resistan	no	no	0.894	0.533	0.256	6e-26

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 45/304 (14%)

Query: 11  KEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDT--KVFGR 68
           K I  +V  EC  LPLAI+T+  ++ G+ ++  W++ LN L+   RS   +DT  K+FG 
Sbjct: 295 KPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLNLLK---RSAPSIDTEEKIFGT 351

Query: 69  LEFSYHRLKDEKLQQCFLYCAL----------------------------------GHTI 94
           L+ SY  L+D  ++ CFL+CAL                                  G T+
Sbjct: 352 LKLSYDFLQD-NMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTL 410

Query: 95  LNRLVNCCLLESAKDGSCVKMHDLIRDMALR-ITSKSPLF--MVTAGLRLLKFPGEQEWE 151
           + RL + CLLE       VKMHD++RD A+  ++S+   F  +V AG  L++FP + ++ 
Sbjct: 411 VERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFP-QDKFV 469

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            +++RVSLM N  E +P+N+    E L  LLLQ N +++ +P  F      L++L+L   
Sbjct: 470 SSVQRVSLMANKLERLPNNVIEGVETL-VLLLQGNSHVKEVPNGFLQAFPNLRILDLSGV 528

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            I  LP+S S+L +LRSL+LR C  L+ +PSL  L+ LQ+LDL  + I E+P G+E L +
Sbjct: 529 RIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSS 588

Query: 272 LSHL 275
           L ++
Sbjct: 589 LRYI 592

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 170/579 (29%), Positives = 252/579 (43%), Gaps = 93/579 (16%)

Query: 11  KEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLE 70
           ++I   V +ECG LPLAI+TV  +M G++ +  W + L++L   +  +  ++ K+F  L+
Sbjct: 325 RKIAKAVSQECGGLPLAIITVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLK 384

Query: 71  FSYHRLKDEKLQQCFLYCAL----------------------------------GHTILN 96
            SY  L+D K + CFL CAL                                  G T + 
Sbjct: 385 LSYDFLED-KAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVE 443

Query: 97  RLVNCCLLESAKDGSCVKMHDLIRDMALRITSKS-----PLFMVTAGLRLLKFPGEQEWE 151
            L + CLLE       VKMHD++RD A+ I S S      L M   GL+ ++   + +  
Sbjct: 444 SLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIR---QDKLA 500

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            +L RVSLM N  E +P  +   C   S LLLQ N  L+ +P  F      L++LNL  T
Sbjct: 501 PSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGT 560

Query: 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
            I+  P+ S+  L +L SL LR C  L ++PSL  L  L+ LDL GT I E P G+E L+
Sbjct: 561 RIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELK 620

Query: 271 NLSHLSL---FMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASG 327
              HL L          AR+  RL +      T + +   V+    +G       +   G
Sbjct: 621 RFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWSVQGETQKGQAT----VEEIG 676

Query: 328 KRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPR--EQGLNLF 385
               L+V  S+RL +      +    +    ++  + G   +        R     LN+ 
Sbjct: 677 CLQRLQV-LSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYILRTRHDKRRLTISHLNVS 735

Query: 386 SLRLLPALQNLEVLAVGYCFLIEEIVA--VEDEETEKELAT----NTIINTVT------- 432
            + +   L     LA+ +C  IE ++   V D +  K L +    N IINT +       
Sbjct: 736 QVSIGWLLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVST 795

Query: 433 ------------LPRLKKLHLE--DLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSL 478
                       LP L++LHL   DL  F  + +  G L   +L+ IE+  C KL+    
Sbjct: 796 NTSKQSSDILDLLPNLEELHLRRVDLETFSELQTHLG-LKLETLKIIEITMCRKLR---- 850

Query: 479 SLPLLDNGQPSPPPALEVIEIK-----KELWESLEWDQP 512
              LLD       P LE IEI      + L E+L + QP
Sbjct: 851 --TLLDKRNFLTIPNLEEIEISYCDSLQNLHEALLYHQP 887

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 153/589 (25%), Positives = 247/589 (41%), Gaps = 124/589 (21%)

Query: 17  VVEECGCLPLAIVTVAASMSGEEEIYEWQNA---LNELRGRLRSLNDVDTKVFGRLEFSY 73
           +V +CG LPLA++T+  +M+  E   EW +A   L      ++ +N     VF  L+FSY
Sbjct: 341 IVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMN----YVFALLKFSY 396

Query: 74  HRLKDEKLQQCFLYCAL---------------------------------GHTILNRLVN 100
             L+ + L+ CFLYCAL                                 G+ ++  L  
Sbjct: 397 DNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKA 456

Query: 101 CCLLESAKDGSCVKMHDLIRDMALRITSKS----PLFMVTAGLRLLKFPGEQEWEENLER 156
            CLLE+  + + VKMH+++R  AL + S+      L +V   +   + P  + W + L  
Sbjct: 457 ACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQAL-V 515

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
           +SL++N  + +P  +   C  L+TL+LQ N  L++IP  FF+HM  L+VL+L  TSI  +
Sbjct: 516 ISLLDNRIQTLPEKLI--CPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEI 573

Query: 217 PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT-WIEEVP-EGMEMLENLSH 274
           P S+  L  L  L +    I      L  L  L++LDL+ T +++ +P + +  L  L  
Sbjct: 574 PLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEV 633

Query: 275 LSLF--MAAEEAARLSDRLDTFVG-----YFSTLNDFNIYVKSTD--------GRGSKNY 319
           L+L+   A  E     +     +G     Y   L    I V S +        G   K+ 
Sbjct: 634 LNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHI 693

Query: 320 -------CLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASL 372
                  C  L            +++R  + K C   E +V P D +             
Sbjct: 694 QHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFE------------- 740

Query: 373 NDVLPREQGLNLFSLRLLP----------ALQNLEVLAVGYCFLIEEIVAV--------- 413
           ND LP  + L L SL  L            L+N+  + + +C  ++ +  V         
Sbjct: 741 NDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWVQKLPKLEVI 800

Query: 414 ------EDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIE- 466
                 E EE   E  + ++ +    P LK L   DL E  SI          S Q++E 
Sbjct: 801 ELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSR-----FSFQKVET 855

Query: 467 --VYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWDQPN 513
             + NCP++K+L           P+       +  +++ W++LE DQPN
Sbjct: 856 LVITNCPRVKKLPFQERRTQMNLPT-------VYCEEKWWKALEKDQPN 897

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 142/306 (46%), Gaps = 66/306 (21%)

Query: 12  EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEF 71
           E+  +V  +C  LPLA+  +  +M+G+  + EW +A++ L       + +D  +   L++
Sbjct: 336 ELAKKVAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDVLTSYAAEFSGMDDHILLILKY 395

Query: 72  SYHRLKDEKLQQCFLYCAL----------------------------------GHTILNR 97
           SY  L D+ ++ CF YCAL                                  G+ IL  
Sbjct: 396 SYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGT 455

Query: 98  LVNCCLL-ESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPGEQEWEE 152
           LV  CLL E  K+   VKMHD++R+MAL   S         +V AG  L K P  ++W  
Sbjct: 456 LVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGA 515

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT- 211
            + R+SLM N  EEI    SP C  L+TL LQ NK L  I   FF HM  L VL+L    
Sbjct: 516 -VRRLSLMNNGIEEISG--SPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENH 572

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            ++ LP  +S+                       L+AL+YLDL  T IE +P  ++ L+ 
Sbjct: 573 QLDGLPEQISE-----------------------LVALRYLDLSHTNIEGLPACLQDLKT 609

Query: 272 LSHLSL 277
           L HL+L
Sbjct: 610 LIHLNL 615

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 151/538 (28%), Positives = 234/538 (43%), Gaps = 103/538 (19%)

Query: 6   VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKV 65
           +PAL +     V  +C  LPLA+  +  +M  +E + EW++A+N L         ++ ++
Sbjct: 332 IPALARI----VAAKCHGLPLALNVIGKAMVCKETVQEWRHAINVLNSPGHKFPGMEERI 387

Query: 66  FGRLEFSYHRLKDEKLQQCFLYCAL----------------------------------G 91
              L+FSY  LK+ +++ CFLYC+L                                  G
Sbjct: 388 LPILKFSYDSLKNGEIKLCFLYCSLFPEDFEIEKDKLIEYWICEGYINPNRYEDGGTNQG 447

Query: 92  HTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPGE 147
           + I+  LV   LL   +    VKMHD+IR+MAL I S    +     V +G  +   P +
Sbjct: 448 YDIIGLLVRAHLLIECELTDKVKMHDVIREMALWINSDFGNQQETICVKSGAHVRLIPND 507

Query: 148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLN 207
             W E + ++SL+    E+I    SP+C  LSTLLL +NK L  I   FF+ M  L VL+
Sbjct: 508 ISW-EIVRQMSLISTQVEKIAC--SPNCPNLSTLLLPYNK-LVDISVGFFLFMPKLVVLD 563

Query: 208 L-CHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG- 265
           L  + S+  LP  +S+L +L+ L L   GI      L KL  L YL+LE T + E   G 
Sbjct: 564 LSTNWSLIELPEEISNLGSLQYLNLSLTGIKSLPVGLKKLRKLIYLNLEFTNVLESLVGI 623

Query: 266 -----------------------MEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLN 302
                                  ME L+ L HL +  A  E A + +R+       S++ 
Sbjct: 624 ATTLPNLQVLKLFYSLFCVDDIIMEELQRLKHLKILTATIEDAMILERVQGVDRLASSIR 683

Query: 303 DFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPE--DVQY 360
              +       R      ++L++    G     + + + +C I E E   +  E  D + 
Sbjct: 684 GLCL-------RNMSAPRVILNSVALGGL----QQLGIVSCNISEIEIDWLSKERRDHRS 732

Query: 361 LEMFGVDDVASLND---VLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEE 417
               G   +AS+     V PR+    LF+       QNL+ + V Y   IEEI+      
Sbjct: 733 TSSPGFKQLASITVIGLVGPRDLSWLLFA-------QNLKDIQVQYSPTIEEII-----N 780

Query: 418 TEKELATNTIINTVTLP--RLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKL 473
            +K ++   +   + +P  +L+ LHL  L E   IC +   L   +L+E  V  CPKL
Sbjct: 781 KQKGMSITKVHRDIVVPFGKLESLHLYQLAELTEICWNYQTL--PNLRESYVNYCPKL 836

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  126 bits (317), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 151/592 (25%), Positives = 251/592 (42%), Gaps = 138/592 (23%)

Query: 12  EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEF 71
           E+  EV ++C  LPLA+  +  +MS +  + EW++A++         +D+  K+   L++
Sbjct: 335 ELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKY 394

Query: 72  SYHRLKDEKLQQCFLYCAL----------------------------------GHTILNR 97
           SY  L DE ++ CFLYCAL                                  G+ +L  
Sbjct: 395 SYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGT 454

Query: 98  LVNCCLLESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPGEQEWEEN 153
           L    LL       CV MHD++R+MAL I S    +   F+V AG+ L + P  ++W   
Sbjct: 455 LTRANLLTKVGTYYCV-MHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGA- 512

Query: 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT-S 212
           + ++SLM+ND EEI       C  L+TL LQ NK L+ +P  F  +M  L VL+L +   
Sbjct: 513 VRKMSLMDNDIEEI--TCESKCSELTTLFLQSNK-LKNLPGAFIRYMQKLVVLDLSYNRD 569

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
              LP  +S L                       ++LQ+LDL  T IE +P G++ L+ L
Sbjct: 570 FNKLPEQISGL-----------------------VSLQFLDLSNTSIEHMPIGLKELKKL 606

Query: 273 SHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNY------------- 319
           + L L          +DRL +  G    L+   + +  +   G  +              
Sbjct: 607 TFLDL--------TYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQEL 658

Query: 320 CLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASL------- 372
            + +SA      + +D+ +      +C  E  +  P D+ +L    +++++SL       
Sbjct: 659 AITVSAE----LISLDQRLAKLISNLC-IEGFLQKPFDLSFLA--SMENLSSLRVENSYF 711

Query: 373 NDVLPREQGLNLFSLRL---LPALQNLEVLAVGYCFLIEE-----------IVAVED--- 415
           +++  RE       LR+   +P   NL  L +  C  +++           ++ +ED   
Sbjct: 712 SEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSRE 771

Query: 416 --EETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKL 473
             E   KE ATN + +     +L+ L L +L + +SI      L    L  ++V NCPKL
Sbjct: 772 VGEIINKEKATN-LTSITPFLKLEWLILYNLPKLESIYW--SPLPFPVLLTMDVSNCPKL 828

Query: 474 KRLSLSLPLLDNGQP-----SPPPALEVIEIKKELWESLEWDQPNAKDVLNP 520
           ++L L+   +   +       PPP  E           LEW+  + K+   P
Sbjct: 829 RKLPLNATSVSKVEEFEIHMYPPPEQE---------NELEWEDDDTKNRFLP 871

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 148/523 (28%), Positives = 229/523 (43%), Gaps = 83/523 (15%)

Query: 17  VVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRL 76
           V ++C  LPLA+  +  +MS +  I EW+NA++ L         ++ K+   L++SY  L
Sbjct: 340 VAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNL 399

Query: 77  KDEKLQQCFLYCAL----------------------------------GHTILNRLVNCC 102
           K E ++   LYCAL                                  G+ I+  LV   
Sbjct: 400 KGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRAS 459

Query: 103 LLESA---KDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPGEQEWEENLE 155
           LL      K  S V MHD++R+MAL I S    +   F+V AG+ + + P  + W   + 
Sbjct: 460 LLMECVDLKGKSSVIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNV-VR 518

Query: 156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY--------LQRIPECFFVHMHGLKVLN 207
           R+SLM N    +    S  C  L+TLLL   +Y        ++ I   FF  M  L VL+
Sbjct: 519 RMSLMGNKIHHLVG--SYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLD 576

Query: 208 LCHT-SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGM 266
           L H  S+  LP  +S+L +L+ L L   GI      + +L  + +L+LE T   E  +G+
Sbjct: 577 LSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGI 636

Query: 267 EMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSK--------N 318
             L NL  L L+      +RL   L+T V    TL    I   + D R  +        +
Sbjct: 637 SSLHNLKVLKLY-----GSRLPWDLNT-VKELETLEHLEILTTTIDPRAKQFLSSHRLMS 690

Query: 319 YCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPR 378
              LL   G   F   D+ +   +    +  E  ++   +  ++M G+ +  SL DV   
Sbjct: 691 RSRLLQIFGSNIF-SPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIY 749

Query: 379 E-QGLN-LFSLRLLPALQNLEVL-AVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPR 435
             +GL  L  L   P L++L V+ A     +I E  A E E++            V  P 
Sbjct: 750 NCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDS----------GIVPFPE 799

Query: 436 LKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSL 478
           LK L+L+DL + K+I       +C  L++I +  CP L++L L
Sbjct: 800 LKYLNLDDLPKLKNIYRRPLPFLC--LEKITIGECPNLRKLPL 840

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 154/332 (46%), Gaps = 77/332 (23%)

Query: 12  EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEF 71
           ++  +V E+C  LPLA+  +  +MS +  I EW++A  E+       + ++ ++   L++
Sbjct: 339 QLARKVSEKCCGLPLALNVIGETMSFKRTIQEWRHA-TEVLTSATDFSGMEDEILPILKY 397

Query: 72  SYHRLKDEKLQQCFLYCAL----------------------------------GHTILNR 97
           SY  L  E  + CFLYC+L                                  G+ IL  
Sbjct: 398 SYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGT 457

Query: 98  LVNCCLL-ESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPGEQEWEE 152
           LV   LL E AKD   V MHD++R+MAL I S         +V AG+ L + P  + W  
Sbjct: 458 LVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRA 517

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT- 211
            ++R+SLM N+FE+I    SP C  L TL LQ+N  L  I   FF  M  L VL+L    
Sbjct: 518 -VKRMSLMNNNFEKILG--SPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENH 574

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
           S+  LP  +S+L                       ++LQYLDL GT+IE +P G+  L  
Sbjct: 575 SLSELPEEISEL-----------------------VSLQYLDLSGTYIERLPHGLHELRK 611

Query: 272 LSHLSLFMAAEEAARLSDRLDTFVG--YFSTL 301
           L HL L     E  R   RL++  G  Y S+L
Sbjct: 612 LVHLKL-----ERTR---RLESISGISYLSSL 635

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 154/561 (27%), Positives = 238/561 (42%), Gaps = 81/561 (14%)

Query: 13  IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFS 72
           +   V ++C  LPLA+  +  +M+ +  + EW++A++ L       + ++ ++   L++S
Sbjct: 338 VARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYS 397

Query: 73  YHRLKDEKLQQCFLYCAL--------------------------------GHTILNRLVN 100
           Y  LK E+L+ CF YCAL                                G+ I+  LV 
Sbjct: 398 YDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVR 457

Query: 101 CCLLESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPGEQEWEENLER 156
            CLL   ++   VKMHD++R+MAL I S    +   F+V AGL+    P  ++W+    R
Sbjct: 458 SCLL-MEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVA-RR 515

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC-HTSIEV 215
           VSLM N+ E I    +P    L TLLL+ N +L  I   FF  M  L VL+L  +  +  
Sbjct: 516 VSLMFNNIESIRD--APESPQLITLLLRKN-FLGHISSSFFRLMPMLVVLDLSMNRDLRH 572

Query: 216 LPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHL 275
           LPN +S+  +L+ L L    I      L +L  L YL+LE T + E   G+  L +L  L
Sbjct: 573 LPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVL 632

Query: 276 SLFMAA----------EEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSA 325
            LF++            +       L   +G  S L  F     S     S    L +  
Sbjct: 633 RLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQF----LSNQRLASCTRALRIEN 688

Query: 326 SGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQ----G 381
                 L    SV  F   +   +E      D+  +++   + V  L+  +P        
Sbjct: 689 ------LNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLH--IPTTTTFFPN 740

Query: 382 LNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVED--EETEKELATNTIINTVTLPRLKKL 439
           L+  SL     L++L  L       +  +++  D  E   KE A     N +    LK+L
Sbjct: 741 LSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQ--NLIPFQELKEL 798

Query: 440 HLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEI 499
            LE+++  K I    G L    LQ+I V  C +L++L L+         S P    VIE 
Sbjct: 799 RLENVQMLKHI--HRGPLPFPCLQKILVNGCSELRKLPLNF-------TSVPRGDLVIEA 849

Query: 500 KKELWESLEWDQPNAKDVLNP 520
            K+  E LEW+    K    P
Sbjct: 850 HKKWIEILEWEDEATKARFLP 870

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  119 bits (298), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 245/581 (42%), Gaps = 115/581 (19%)

Query: 12  EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEF 71
           E+   +  +C  LPLA+  +  +M+ ++ I EW +A+    G       ++  +   L+F
Sbjct: 336 EVAKSIARKCNGLPLALNVIGETMARKKSIEEWHDAVGVFSG-------IEADILSILKF 388

Query: 72  SYHRLKDEKLQQCFLYCAL-------------------------------GHTILNRLVN 100
           SY  LK EK + CFL+ AL                               G+TI+  L  
Sbjct: 389 SYDDLKCEKTKSCFLFSALFPEDYEIGKDDLIEYWVGQGIILGSKGINYKGYTIIGTLTR 448

Query: 101 CCLLESAKDGSCVKMHDLIRDMALRITS------KSPLFMVTAGLRLLKFPGEQEWEENL 154
             LL+ ++    VKMHD++R+MAL I+S      +  + +V A  +L   P  ++ ++ +
Sbjct: 449 AYLLKESETKEKVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIED-QKAV 507

Query: 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH--------------- 199
            R+SL+ N  EE   ++  HC  L TLLL+ N+ L++I   F  H               
Sbjct: 508 RRMSLIYNQIEEACESL--HCPKLETLLLRDNR-LRKISREFLSHVPILMVLDLSLNPNL 564

Query: 200 --------MHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQY 251
                   ++ L+ LNL  T I  LP+ +  L NL  L L    +LKR+  +  L  L+ 
Sbjct: 565 IELPSFSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEV 624

Query: 252 LDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKST 311
           L L  + I+   + +  ++ + HL L        R S  L+ F+G       F+ Y +  
Sbjct: 625 LKLYASGIDITDKLVRQIQAMKHLYLLTI---TLRNSSGLEIFLGD----TRFSSYTEGL 677

Query: 312 DGRGSKNYCLL---LSASGKRGFLEVDKS----VRLFACKICETEETIVLP---EDVQYL 361
                  Y  L   L+      FLE+  S    + +      E+E  IV P    D+ ++
Sbjct: 678 TLDEQSYYQSLKVPLATISSSRFLEIQDSHIPKIEIEGSSSNESE--IVGPRVRRDISFI 735

Query: 362 EMFGV--DDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETE 419
            +  V  D+   L D         L  L   P L  L V+ +     IE I++  +E   
Sbjct: 736 NLRKVRLDNCTGLKD---------LTWLVFAPHLATLYVVCLPD---IEHIISRSEESRL 783

Query: 420 KELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLS 479
           ++  T  +   +    L+ L L +L + KSI  D   L+   L+EI + +CPKL +L L 
Sbjct: 784 QK--TCELAGVIPFRELEFLTLRNLGQLKSIYRDP--LLFGKLKEINIKSCPKLTKLPLD 839

Query: 480 LPLLDNGQPSPPPALEVIEIKKELWESLEWDQPNAKDVLNP 520
                    S      VI  ++E  + L+W+    K+   P
Sbjct: 840 -------SRSAWKQNVVINAEEEWLQGLQWEDVATKERFFP 873

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
224109372	1077	BED finger-nbs-lrr resistance protein [P	0.975	0.471	0.367	4e-93
224108229	900	BED finger-nbs-lrr resistance protein [P	0.953	0.552	0.375	1e-91
224112395	1062	nbs-lrr resistance protein [Populus tric	0.953	0.467	0.389	4e-91
224115986	1093	BED finger-nbs-lrr resistance protein [P	0.967	0.461	0.383	6e-91
224110812	681	predicted protein [Populus trichocarpa]	0.975	0.745	0.370	1e-90
105922577	1183	NBS-LRR type disease resistance protein	0.959	0.422	0.357	3e-88
224113569	1139	BED finger-nbs-lrr resistance protein [P	0.953	0.436	0.364	4e-84
224144595	1176	BED finger-nbs-lrr resistance protein [P	0.955	0.423	0.355	5e-84
224105081	957	nbs-lrr resistance protein [Populus tric	0.955	0.520	0.382	2e-83
224106119	880	nbs-lrr resistance protein [Populus tric	0.944	0.559	0.371	2e-80

>gi|224109372|ref|XP_002333267.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222835868|gb|EEE74289.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 338/680 (49%), Gaps = 172/680 (25%)

Query: 1    TNIL-QVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLN 59
            T IL ++P+  +EI   +  EC  LPL I T+A +M G ++I EW+NAL EL+     L 
Sbjct: 406  TKILGRIPSEVEEIAKSMARECAGLPLGIKTMAGTMRGVDDICEWRNALEELKQSRVRLE 465

Query: 60   DVDTKVFGRLEFSYHRLKDEKLQQCFLYCAL----------------------------- 90
            D+D +VF  L FSY  LK+  LQQCFL+CAL                             
Sbjct: 466  DMDEEVFQILRFSYMHLKESALQQCFLHCALFPEDFMIPREDLIAYLIDEGVIKGLTRRE 525

Query: 91   -----GHTILNRLVNCCLLESAKDGS------CVKMHDLIRDMALRITSKSPLFMVTAGL 139
                 GHT+LN+L + CLLE AK  S       VKMHDLIRDMA++I  ++   MV AG 
Sbjct: 526  AEFDKGHTMLNKLESACLLEDAKLYSGRRCVRAVKMHDLIRDMAIQILQENSQGMVKAGA 585

Query: 140  RLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH 199
            +L + PG +EW ENL RVSLM+N  +EIP + SP C  LSTLLL  N  LQ I + FF  
Sbjct: 586  QLRELPGAEEWTENLTRVSLMQNQIKEIPFSHSPRCPSLSTLLLCRNPKLQFIADSFFEQ 645

Query: 200  MHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTW- 258
            +HGLKVL+L +T I  LP+SVS+L +L +LLL  C +L+ VPSL KL AL+ LDL GTW 
Sbjct: 646  LHGLKVLDLSYTGITKLPDSVSELVSLTALLLIDCKMLRHVPSLEKLRALKRLDLSGTWA 705

Query: 259  IEEVPEGME---------------------MLENLSHLSLFMAAEEAARLSD-------- 289
            +E++P+GME                     +L  LSHL +F+  E   R +         
Sbjct: 706  LEKIPQGMECLCNLRYLIMNGCGEKEFPSGLLPKLSHLQVFVLEEWIPRPTGDYRERQDA 765

Query: 290  -------------RLDTFVGYFSTLNDFNIYVKSTDGRGS-KNYCLLLSASGK------- 328
                         +L++   +F   +D+  Y+KS D   S   Y +L+    K       
Sbjct: 766  PITVKGKEVGCLRKLESLACHFEGCSDYMEYLKSQDETKSLTTYQILVGPLDKYDYCYCY 825

Query: 329  -----------RGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVL- 376
                       RG L +D+               ++ P+D+Q L +   DD  SL D L 
Sbjct: 826  GYDGCRRKAIVRGNLSIDRDGGF----------QVMFPKDIQQLSIHNNDDATSLCDFLS 875

Query: 377  -----------------------------------PREQGL----------------NLF 385
                                               P   G+                 LF
Sbjct: 876  LIKSVTELEAITIFSCNSMESLVSSSWFRSAPLPSPSYNGIFSSLKKFFCSGCSSMKKLF 935

Query: 386  SLRLLPALQNLEVLAVGYCFLIEEIVA---VEDEETEKELATNTIINTVTLPRLKKLHLE 442
             L LLP L  LE + V  C  +EEI+     ++E    E ++++ I  + L +L  L L 
Sbjct: 936  PLVLLPNLVKLEEITVTKCEKMEEIIGGTRSDEEGVMGEESSSSSITDLKLTKLSSLTLI 995

Query: 443  DLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEI-KK 501
            +L E +SICS    L+C+SL+EI VYNC KLKR+ + LPLL+NGQPSPPP+L  IE+  +
Sbjct: 996  ELPELESICS--AKLICDSLKEIAVYNCKKLKRMPICLPLLENGQPSPPPSLRKIEVYPE 1053

Query: 502  ELWES-LEWDQPNAKDVLNP 520
            E WES +EW+ PNAKDVL P
Sbjct: 1054 EWWESVVEWEHPNAKDVLRP 1073

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108229|ref|XP_002333416.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222836514|gb|EEE74921.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 240/639 (37%), Positives = 335/639 (52%), Gaps = 142/639 (22%)

Query: 13  IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFS 72
           I  ++ +EC  LPL I+TVA S+ G +++++W+N L +LR       D+D KVF  L FS
Sbjct: 264 IAKDIAKECDGLPLGIITVAGSLRGVDDLHQWRNTLTKLRES--EFRDIDEKVFRLLRFS 321

Query: 73  YHRLKDEKLQQCFLYCAL----------------------------------GHTILNRL 98
           Y RL D  LQQC LYCAL                                  GHT+LN+L
Sbjct: 322 YDRLGDLALQQCLLYCALFPEDDHIKREELIGYLIDEGIIKRKRSRGDAFDEGHTMLNKL 381

Query: 99  VNCCLLESAK---DGS-CVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENL 154
            N CLLESAK   DGS C KMHDLIRDMA++I  ++   MV AG +L + P  +EW ENL
Sbjct: 382 ENVCLLESAKMDYDGSRCFKMHDLIRDMAIQILLENSQGMVKAGAQLKELPDAEEWMENL 441

Query: 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214
            RVSLM+N+ EEIPS+ SP C  LSTL L+ N  L+ + + FF  +HGLKVL+L +  IE
Sbjct: 442 TRVSLMQNEIEEIPSSYSPRCPYLSTLFLRDNDRLRFVADSFFKQLHGLKVLDLSYKGIE 501

Query: 215 VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN--- 271
            LP+SVSDL +L +LLL+ C  L+ VPSL KL AL+ LDL  T ++++P+GME L N   
Sbjct: 502 NLPDSVSDLVSLTALLLKECENLRHVPSLEKLRALKRLDLYWTPLKKMPQGMECLTNLRY 561

Query: 272 ------------------LSHLSLFMAAE----------------EAARLSDRLDTFVGY 297
                             LSHL +F+  E                E   L + L++   +
Sbjct: 562 LRMNGCGEKEFPSGILPKLSHLQVFVLEELMGECCAYAPITVKGKEVGSLRN-LESLECH 620

Query: 298 FSTLNDFNIYVKSTDGRGS-KNYCLL------------------------LSASGKRGF- 331
           F   +DF  Y++S DG  S   Y ++                        LS +G   F 
Sbjct: 621 FEGFSDFVEYLRSRDGIQSLSTYTIIVGMVDTDKWIGTCAFPSKTVGLGNLSINGDGDFQ 680

Query: 332 LEVDKSVRLFACKICETEE--TIVLPEDVQYLEMFGVDDVASLNDV------------LP 377
           ++    ++   C+  +      ++  E+   LE+  ++D  ++  +            LP
Sbjct: 681 VKYLNGIQGLVCECIDARSLCDVLSLENATELELIRIEDCNNMESLVSSSWFCSAPPPLP 740

Query: 378 REQGL----------------NLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKE 421
              G+                 LF L LLP   NLE + V  C  +EEI+   DEE+   
Sbjct: 741 SYNGMFSSLKMFYCYGCESMKKLFPLVLLPNFVNLERIVVEDCKKMEEIIGTTDEES--- 797

Query: 422 LATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLP 481
            +T+  I  V LP+L+ L L +L E KSICS    L+CNSL++I+V +C KLKR+ + LP
Sbjct: 798 -STSNSITEVILPKLRTLRLFELPELKSICSAK--LICNSLEDIDVEDCQKLKRMPICLP 854

Query: 482 LLDNGQPSPPPALEVIEI-KKELWES-LEWDQPNAKDVL 518
           LL+N QPSPPP+L+ I +  +E WE+ +EW+ PNAKDVL
Sbjct: 855 LLENDQPSPPPSLKEITVYPEEWWETVVEWEHPNAKDVL 893

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112395|ref|XP_002332783.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222833192|gb|EEE71669.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 249/640 (38%), Positives = 323/640 (50%), Gaps = 143/640 (22%)

Query: 13   IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELR-GRLRSLNDVDTKVFGRLEF 71
            I   V  EC  LPL I+TVA S+ G  +++EW+  L +LR    R     D +VF  L F
Sbjct: 429  IAKAVARECAGLPLGIITVAGSLRGVNDLHEWRTTLKKLRVSEFR-----DKEVFKLLRF 483

Query: 72   SYHRLKDEKLQQCFLYCAL----------------------------------GHTILNR 97
            SY RL D  LQQC LYCAL                                  GHT+LNR
Sbjct: 484  SYDRLDDLALQQCLLYCALFPEDGVIEREELIGYLIDEGIIKGKRSRGDAFDEGHTMLNR 543

Query: 98   LVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERV 157
            L   CLLESAK    VKMHDLIRDMA+ I   +   MV AG +L + P  +EW ENL RV
Sbjct: 544  LEYVCLLESAKMEYGVKMHDLIRDMAIHILQDNSQVMVKAGAQLKELPDAEEWTENLTRV 603

Query: 158  SLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP 217
            SL+ N  +EIPS+ SP C  LSTL L  N  L+ I + FF  +HGLKVLNL  T IE LP
Sbjct: 604  SLIRNKIKEIPSSYSPRCPYLSTLFLCANGGLRFIGDSFFKQLHGLKVLNLSGTGIENLP 663

Query: 218  NSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGME---------- 267
            +SVSDL +L +LLL +C  L+ VPSL KL AL+ LDL  T +E++P+GME          
Sbjct: 664  DSVSDLVSLTALLLSYCYNLRHVPSLKKLRALKRLDLFDTTLEKMPQGMECLTNLRHLRM 723

Query: 268  -----------MLENLSHLSLF--------------MAAEEAARLSDRLDTFVGYFSTLN 302
                       +L NLSHL +F              +  +E   L + L+T   +F   +
Sbjct: 724  NGCGEKEFPSGILPNLSHLQVFVLEEFMGNCYAPITVKGKEVGSLRN-LETLECHFEGFS 782

Query: 303  DFNIYVKSTDGRGS-KNYCLLLS-------ASGKRGFLEVDKSVRL----------FACK 344
            DF  Y++S DG  S   Y +L+        A+      ++ K+V L          F  K
Sbjct: 783  DFVEYLRSRDGIQSLSTYKILVGMVDDFYWANMDANIDDITKTVGLGNLSINGDGDFKVK 842

Query: 345  --------ICETEET-----IVLPEDVQYLEMFGVDDVASLNDVL---------PREQGL 382
                    +CE  +      ++  E+   LE F + D  ++  ++         PR    
Sbjct: 843  FFNGIQRLVCERIDARSLYDVLSLENATELEAFMIRDCNNMESLVSSSWFCYTPPRLPSY 902

Query: 383  N-------------------LFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELA 423
            N                   LF L LLP   NLE + V  C  +EEIV   DEE+    +
Sbjct: 903  NGTFSGLKEFYCGGCNNMKKLFPLVLLPNFVNLEDIYVRDCEKMEEIVGTTDEES----S 958

Query: 424  TNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLL 483
            T+  I    LP+L+ L L  L E KSICS    L CNSL+ I V +C KLKR+++ LPLL
Sbjct: 959  TSNSITGFILPKLRSLELFGLPELKSICS--AKLTCNSLETISVMHCEKLKRMAICLPLL 1016

Query: 484  DNGQPSPPPAL-EVIEIKKELWES-LEWDQPNAKDVLNPY 521
            +NGQPSPPP+L E+I   KE WES +EW+ PNAKDVL P+
Sbjct: 1017 ENGQPSPPPSLEEIIVYPKEWWESVVEWEHPNAKDVLRPF 1056

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115986|ref|XP_002332020.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222875245|gb|EEF12376.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 248/646 (38%), Positives = 333/646 (51%), Gaps = 142/646 (21%)

Query: 8    ALNKE---IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTK 64
            AL++E   I   V  EC  LPL I+ VA S+ G +++++W+N LN+LR       D+D K
Sbjct: 452  ALSREVEGIAKAVARECAGLPLGIIAVAGSLRGVDDLHDWRNTLNKLRES--EFRDMDEK 509

Query: 65   VFGRLEFSYHRLKDEKLQQCFLYCAL---------------------------------- 90
            VF  L+FSY RL D  L+QC LYCAL                                  
Sbjct: 510  VFKLLKFSYDRLGDLALKQCLLYCALFPEDDRIKRKRLIGYLIDEGIIKGKRTRGDAFDE 569

Query: 91   GHTILNRLVNCCLLESAK--DGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQ 148
            GHT+LNRL N CLLESA   +G  VKMHDLIRDMA++I  ++   MV AG +L + P  +
Sbjct: 570  GHTMLNRLENVCLLESANCNNGRRVKMHDLIRDMAIQILLENSQGMVKAGAQLKELPDAE 629

Query: 149  EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNL 208
            EW +NL RVSLM+N  EEIPS+ SP C  LSTL L  N+ L+ + + FF  +HGLKVL+L
Sbjct: 630  EWMKNLTRVSLMQNKIEEIPSSHSPMCPNLSTLFLCDNRGLRFVADSFFKQLHGLKVLDL 689

Query: 209  CHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEM 268
              T IE LP+SVSDL +L +LLL+ C  L+ VPSL KL+AL+ LDL  T ++++P+GME 
Sbjct: 690  SCTGIENLPDSVSDLVSLTALLLKKCENLRHVPSLKKLMALKRLDLSRTALKKMPQGMEC 749

Query: 269  LEN---------------------LSHLSLF---------------MAAEEAARLSDRLD 292
            L N                     LSHL +F               +  +E   L + LD
Sbjct: 750  LNNLRYLRMNGCGEKEFPSGILSKLSHLQVFVLEETLIDRRYAPITVKGKEVGSLRN-LD 808

Query: 293  TFVGYFSTLNDFNIYVKSTDGRGS-KNYCLLLSASGKRGFLEVD----KSVRLFACKICE 347
            T   +F   +DF  Y++S DG  S   Y + +   G   +  +D    K VRL    I  
Sbjct: 809  TLECHFKGFSDFVEYLRSQDGIQSLSGYRISVGMVGTYFWKYMDNLPCKRVRLCNLSINR 868

Query: 348  TEETIVLP-EDVQYLEMFGVDDVASLNDVLPREQ-------------------------- 380
              +  V+   D+Q L    + D  SL DVL  E                           
Sbjct: 869  DRDFQVMSLNDIQGLVCECI-DARSLCDVLSLENATELKHISIWDCNSMESSVSSSWFCC 927

Query: 381  -----------GLNLFSLRLLPALQNL------------EVLAVGYCFLIEEIVAVEDEE 417
                       GL  F      +++ L            EV+ V  C  +EEI+   DEE
Sbjct: 928  APPPLPSCMFSGLKEFYCVRCKSMKKLFPLVLLSNLVNLEVIDVRDCEKMEEIIGTTDEE 987

Query: 418  TEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLS 477
            +    +T+  I  + LP+L+ L L  L E KSICS    L+CNSL++I V +C KLKR+ 
Sbjct: 988  S----STSISITKLILPKLRTLRLRYLPELKSICS--AKLICNSLEDITVEDCDKLKRMP 1041

Query: 478  LSLPLLDNGQPSPPPALEVIEIK-KELWES-LEWDQPNAKDVLNPY 521
            + LPLL+NGQPSPPP+L  + IK KE WE+ +EW+ PNAKDVL P+
Sbjct: 1042 ICLPLLENGQPSPPPSLRRMNIKSKEWWETVVEWEHPNAKDVLRPF 1087

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110812|ref|XP_002333023.1| predicted protein [Populus trichocarpa] gi|222834655|gb|EEE73118.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 327/643 (50%), Gaps = 135/643 (20%)

Query: 11  KEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLE 70
           ++I   V  EC  LPL I+T+AA+M G  ++ EW+NAL EL+      +D++ +VF  L 
Sbjct: 36  EQIAKSVARECAGLPLGIITMAATMRGVVDVREWRNALEELKESKVRKDDMEPEVFHILR 95

Query: 71  FSYHRLKDEKLQQCFLYCAL----------------------------------GHTILN 96
           FSY+ L D  LQQCFLYCAL                                  GH++LN
Sbjct: 96  FSYNHLSDSALQQCFLYCALFPEDFKIRRDDLVAYLIDEGVIKGLKSREAEFDRGHSMLN 155

Query: 97  RLVNCCLLESAKDG----SCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEE 152
           RL N CLLE AK+G      +KMHDLIRDMA++I  ++   MV AG +L + P   EW E
Sbjct: 156 RLQNVCLLEGAKEGYGNDRYIKMHDLIRDMAIQILQENSQGMVKAGAQLRELPDADEWTE 215

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           N  RVSLM N  ++IPS+ SP C  LSTLLL  N  L+ I + FF  + GLKVL+L +T+
Sbjct: 216 NFTRVSLMHNHIQDIPSSHSPRCPSLSTLLLCENSELKFIADSFFEQLRGLKVLDLSYTN 275

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTW-IEEVPEGME---- 267
           I  LP+SVS+L NL +LLL  C +L+ VPSL KL AL+ LDL GTW +E++P+GME    
Sbjct: 276 ITKLPDSVSELVNLTALLLIGCHMLRHVPSLEKLRALRRLDLSGTWALEKMPQGMECLCN 335

Query: 268 -----------------MLENLSHLSLF----------------MAAEEAARLSDRLDTF 294
                            +L  LSHL +F                +  +E A L  +L++ 
Sbjct: 336 LRYLRMNGCGEKEFPSGLLPKLSHLQVFELKSAKDRGGQYAPITVKGKEVACLR-KLESL 394

Query: 295 VGYFSTLNDFNIYVKSTDGRGS-KNYCLLLSASGKRGFLEVDKSVRLFACKIC-ETEETI 352
             +F   +DF  Y+KS D   S   Y +++         +  K+V L    +  + +   
Sbjct: 395 GCHFEGYSDFVEYLKSQDETQSLSKYQIVVGLLDINFSFQRSKAVFLDNLSVNRDGDFQD 454

Query: 353 VLPEDVQYLEMFGVDDVASLNDV------------------------------------L 376
           + P+D+Q L +   +D  SL D+                                    L
Sbjct: 455 MFPKDIQQLIIDKCEDATSLCDIFSLIKYTTQLEIIWIRDCNSMESLVSSSWLCSAPLSL 514

Query: 377 PREQGL----------------NLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEK 420
           P   G+                 LF L LLP L NLEV+ V +C  IEEI+     + E 
Sbjct: 515 PSYNGIFSSLGVFYCYGCRSMKKLFPLVLLPHLVNLEVIQVIHCEKIEEIIGGTRSDEEG 574

Query: 421 ELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL 480
            +      +   LP+L+ L L  L E KSICS    L+C+SLQ I V NC KLK + + L
Sbjct: 575 VMDEENSSSEFKLPKLRCLVLYGLPELKSICS--AKLICDSLQVITVMNCEKLKGMGICL 632

Query: 481 PLLDNGQPSPPPALE-VIEIKKELWES-LEWDQPNAKDVLNPY 521
           PLL+NGQPSPPP+LE ++ + +E WES +EW+ P  KDVL P+
Sbjct: 633 PLLENGQPSPPPSLERIVAMPEEWWESVVEWEHPKTKDVLRPF 675

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922577|gb|ABF81424.1| NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 243/679 (35%), Positives = 329/679 (48%), Gaps = 179/679 (26%)

Query: 1    TNIL-QVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLN 59
            T IL ++P+  +EI   +  EC  LPL I T+A +M G ++I EW+NAL EL+     L 
Sbjct: 486  TKILGRIPSEVEEIAKSMARECAGLPLGIKTMAGTMRGVDDICEWRNALEELKQSRVRLE 545

Query: 60   DVDTKVFGRLEFSYHRLKDEKLQQCFLYCAL----------------------------- 90
            D+D +VF  L FSY  LK+  LQQCFL+CAL                             
Sbjct: 546  DMDEEVFQILRFSYMHLKESALQQCFLHCALFPEDFMIPREDLIAYLIDEGVIKGLTRRE 605

Query: 91   -----GHTILNRLVNCCLLESAKDGS------CVKMHDLIRDMALRITSKSPLFMVTAGL 139
                 GHT+LN+L + CLLE AK  S       VKMHDLIRDMA++I  ++   MV AG 
Sbjct: 606  AEFDKGHTMLNKLESACLLEDAKLYSGRRCVRAVKMHDLIRDMAIQILQENSQGMVKAGA 665

Query: 140  RLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH 199
            +L + PG +EW ENL RVSLM+N  +EIP + SP C  LSTLLL  N  LQ I + FF  
Sbjct: 666  QLRELPGAEEWTENLTRVSLMQNQIKEIPFSHSPRCPSLSTLLLCRNPKLQFIADSFFEQ 725

Query: 200  MHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTW- 258
            +HGLKVL+L +T I  LP+SVS+L +L +LLL  C +L+ VPSL KL AL+ LDL GTW 
Sbjct: 726  LHGLKVLDLSYTGITKLPDSVSELVSLTALLLIDCKMLRHVPSLEKLRALKRLDLSGTWA 785

Query: 259  IEEVPEGME---------------------MLENLSHLSLFMAAEEAARLSD-------- 289
            +E++P+GME                     +L  LSHL +F+  E   R +         
Sbjct: 786  LEKIPQGMECLCNLRYLIMNGCGEKEFPSGLLPKLSHLQVFVLEEWIPRPTGDYRERQDA 845

Query: 290  -------------RLDTFVGYFSTLNDFNIYVKSTDGRGS-KNYCLLLSASGK------- 328
                         +L++   +F   +D+  Y+KS D   S   Y +L+    K       
Sbjct: 846  PITVKGKEVGCLRKLESLACHFEGCSDYMEYLKSQDETKSLTTYQILVGPLDKYDYCYCY 905

Query: 329  -----------RGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVL- 376
                       RG L +D+               ++ P+D+Q L +   DD  SL D L 
Sbjct: 906  GYDGCRRKAIVRGNLSIDRDGGF----------QVMFPKDIQQLSIHNNDDATSLCDFLS 955

Query: 377  -----------------------------------PREQGL----------------NLF 385
                                               P   G+                 LF
Sbjct: 956  LIKSVTELEAITIFSCNSMESLVSSSWFRSAPLPSPSYNGIFSSLKKFFCSGCSSMKKLF 1015

Query: 386  SLRLLPALQNLEVLAVGYCFLIEEIVA---VEDEETEKELATNTIINTVTLPRLKKLHLE 442
             L LLP L  LE + V  C  +EEI+     ++E    E ++++ I  + L +L  L L 
Sbjct: 1016 PLVLLPNLVKLEEITVTKCEKMEEIIGGTRSDEEGVMGEESSSSSITDLKLTKLSSLTLI 1075

Query: 443  DLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKE 502
            +L E +SICS    L+C+SL+EI VYNC KLKR+ + LPLL+NGQPSPPP+L  IE  K 
Sbjct: 1076 ELPELESICS--AKLICDSLKEIAVYNCKKLKRMPICLPLLENGQPSPPPSLRKIERVK- 1132

Query: 503  LWESLEWDQPNAKDVLNPY 521
                     PNA DV+ P+
Sbjct: 1133 --------HPNACDVIRPF 1143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113569|ref|XP_002332538.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222832682|gb|EEE71159.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 332/640 (51%), Gaps = 143/640 (22%)

Query: 13   IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELR-GRLRSLNDVDTKVFGRLEF 71
            I  ++  EC  LPL I+TVA S+ G +++++W+N LN+L+    R     D KVF  L  
Sbjct: 508  IAKDIARECAGLPLGIITVARSLRGVDDLHQWRNTLNKLKESEFR-----DMKVFKLLRL 562

Query: 72   SYHRLKDEKLQQCFLYCAL----------------------------------GHTILNR 97
            SY RL D  LQQC LYCAL                                  GHT+LNR
Sbjct: 563  SYDRLGDLALQQCLLYCALFPEDHRIEREELIGYLIDVGIIKGMRSRKYAFDEGHTMLNR 622

Query: 98   LVNCCLLESAK---DGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENL 154
            L + CLLE A+       VKMHDLIRDMA++I  ++   MV AG +L + P  +EW ENL
Sbjct: 623  LEHVCLLERAQMMGSPRRVKMHDLIRDMAIQILLENSRGMVKAGAQLKELPDAEEWTENL 682

Query: 155  ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214
              VSLM+N++EEIP+  SP C  LSTLLL  N++L  I + FF  +HGLKVL+L  T IE
Sbjct: 683  TIVSLMQNEYEEIPTGHSPRCPYLSTLLLCQNRWLGFIADSFFKQLHGLKVLDLSCTGIE 742

Query: 215  VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL-- 272
             LP+SVSDL +L +LLL  C  LK VPSL KL AL+ L+L  T +E++P+GME L NL  
Sbjct: 743  NLPDSVSDLVSLTALLLSHCDKLKHVPSLKKLTALKRLNLSWTTLEKMPQGMECLTNLRY 802

Query: 273  -------------------SHLSLFM--------------AAEEAARLSDRLDTFVGYFS 299
                               SHL  F+                +E   L + L++   +F 
Sbjct: 803  LRMTGCGEKEFPSGILPKLSHLQDFVLEEFMVRGDPPITVKGKEVGSLRN-LESLECHFE 861

Query: 300  TLNDFNIYVKSTDGRGS-KNYCLLLSASGKRGFLEVD----KSVRL----------FACK 344
              +DF  Y++S  G  S   Y +L+       + +++    K+V L          F  K
Sbjct: 862  GFSDFMEYLRSRYGIQSLSTYKILVGMVNAHYWAQINNFPSKTVGLGNLSINGDGDFQVK 921

Query: 345  --------ICETEET-----IVLPEDVQYLEMFGVDDVASLNDVL---------PR---- 378
                    +CE  +      ++  E+   LE+  +    S+  ++         PR    
Sbjct: 922  FLNGIQGLVCECIDARSLCDVLSLENATELEVITIYGCGSMESLVSSSWFCYAPPRLPSC 981

Query: 379  ---EQGLNLFSLRLLPALQNL------------EVLAVGYCFLIEEIVAVEDEETEKELA 423
                 GL  FS R   +++ L            EV++V +C  +EEI+   DEE+   + 
Sbjct: 982  NGTFSGLKEFSCRRCKSMKKLFPLVLLPNLVNLEVISVCFCEKMEEIIGTTDEES---IT 1038

Query: 424  TNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLL 483
            +N+I   + LP+L+ L L  L E KSICS    L+CN+L++I V +C +LKR+ + LPLL
Sbjct: 1039 SNSITEFI-LPKLRTLELLGLPELKSICSAK--LICNALEDICVIDCKELKRMPICLPLL 1095

Query: 484  DNGQPSPPPALE-VIEIKKELWES-LEWDQPNAKDVLNPY 521
            +NGQPSPPP+L+ ++   ++ WES +EW+ PNAKDVL P+
Sbjct: 1096 ENGQPSPPPSLKNILASPRQWWESVVEWEHPNAKDVLRPF 1135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144595|ref|XP_002325344.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222862219|gb|EEE99725.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 228/641 (35%), Positives = 320/641 (49%), Gaps = 143/641 (22%)

Query: 11   KEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLE 70
            ++I  +V  EC  LPL I+TVA S+ G +++YEW+N LN+LR      ND++ +VF  L 
Sbjct: 543  EQIAVDVARECAGLPLGIITVARSLRGVDDLYEWRNTLNKLRES--KFNDMEDEVFRLLR 600

Query: 71   FSYHRLKDEKLQQCFLYCAL----------------------------------GHTILN 96
            FSY +L D  LQ C LYCAL                                  GHT+LN
Sbjct: 601  FSYDQLDDLTLQHCLLYCALFPEDHIIRRDDLINYLIDEGIMKGMRSSQAAFDEGHTMLN 660

Query: 97   RLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLER 156
            +L N CLLE    G  +KMHDLIRDMA++I  ++   MV AG++L + P  +EW ENL R
Sbjct: 661  KLENVCLLERLGGGIFIKMHDLIRDMAIQIQQENSQIMVKAGVQLKELPDAEEWTENLVR 720

Query: 157  VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
            VSLM N  E+IP + SP C  LSTL L +N  L+ I + FF+ +HGLKVLNL  TSI+ L
Sbjct: 721  VSLMCNQIEKIPWSHSPRCPNLSTLFLCYNTRLRFISDSFFMQLHGLKVLNLSSTSIKKL 780

Query: 217  PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN----- 271
            P+S+SDL  L +LLL  C  L+ VPSL KL AL+ LDL  T + ++P+GME L N     
Sbjct: 781  PDSISDLVTLTALLLNSCLNLRGVPSLRKLTALKRLDLFNTELGKMPQGMECLSNLWYLR 840

Query: 272  ----------------LSHLSLFMAAEEAARLSD------RLDTFVGYFSTLNDFNIYVK 309
                            LSHL +F+++              +L+T   +F   +DF  +++
Sbjct: 841  LDSNGKKEFLSGILPELSHLQVFVSSASIKVKGKELGCLRKLETLECHFEGHSDFVEFLR 900

Query: 310  STDGRGS-------------KNYCLLLSASGKRGFLEVDKSVRLFACKI-CETEETIVLP 355
            S D   S             + Y ++   S +R      K V L    I  + +  ++ P
Sbjct: 901  SRDQTKSLSKYRIHVGLLDDEAYSVMWGTSSRR------KIVVLSNLSINGDGDFQVMFP 954

Query: 356  EDVQYLEMFGVDDVASLND---VLPREQGLNLFSLRLLPALQNLEVLAVGYCFL------ 406
             D+Q L++   +D  +L D   V+     L +  +R    +++L VL+  +C        
Sbjct: 955  NDIQELDIINCNDATTLCDISSVIVYATKLEILDIRKCSNMESL-VLSSRFCSAPLPLPS 1013

Query: 407  --------------------------------------------IEEIVAVEDEETEKEL 422
                                                        +EEI+   DEE     
Sbjct: 1014 SNSTFSGLKEFYFCNCKSMKKLLPLLLLPNLKNLEKLAVEECEKMEEIIGTTDEEISS-- 1071

Query: 423  ATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPL 482
            +++  I    LP+L+ L L+ L E KSIC     ++C+SL+ IEV  C KL+R  + LPL
Sbjct: 1072 SSSNPITKFILPKLRILRLKYLPELKSICG--AKVICDSLEYIEVDTCEKLERFPICLPL 1129

Query: 483  LDNGQPSPPPALEVIEI-KKELWESL-EWDQPNAKDVLNPY 521
            L+NGQPSP P+L  I I  KE WESL EW+ PNAKDVL P+
Sbjct: 1130 LENGQPSPLPSLRSIAIYPKEWWESLAEWEHPNAKDVLLPF 1170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105081|ref|XP_002333864.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222838740|gb|EEE77105.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 327/636 (51%), Gaps = 138/636 (21%)

Query: 13  IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELR-GRLRSLNDVDTKVFGRLEF 71
           I   V +EC  LPL I+TVA S+ G ++++EW+N LN+LR    R     + KVF  L F
Sbjct: 331 IAKAVAKECAGLPLGIITVAGSLRGVDDLHEWRNTLNKLRESEFR-----EKKVFKLLRF 385

Query: 72  SYHRLKDEKLQQCFLYCAL----------------------------------GHTILNR 97
           SY +L D  LQQC LYCAL                                  GH++LN 
Sbjct: 386 SYDQLGDLALQQCLLYCALFPEDDRIEREGLIGYLIDERIIKGMRSRGAAFDEGHSMLNI 445

Query: 98  LVNCCLLESAK----DGSCVKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEEN 153
           L N CLLESA+    D   VKMHDLIRDMA+++  ++   MV AG +L + P  +EW EN
Sbjct: 446 LENVCLLESAQMDYDDRRYVKMHDLIRDMAIQLLLENSQGMVKAGAQLKELPDAEEWTEN 505

Query: 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI 213
           L RVSLM+N+ EEIPS+ SP C  LSTLLL  N  L  I + FF  +HGLKVL+L  T I
Sbjct: 506 LMRVSLMQNEIEEIPSSHSPTCPYLSTLLLCKNNLLGFIADSFFKQLHGLKVLDLSWTGI 565

Query: 214 EVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN-- 271
           E LP+SVSDL +L +LLL  C  L+ V SL KL AL+ L+L  T +E++P+GME L N  
Sbjct: 566 ENLPDSVSDLVSLSALLLNDCEKLRHVSSLKKLRALKRLNLSRTALEKMPQGMECLTNLR 625

Query: 272 -------------------LSHLSLFMAAE-------------EAARLSDRLDTFVGYFS 299
                              LSHL +F+  E             +  R    L+T   +F 
Sbjct: 626 YLRMNGCGEKEFPSGILPKLSHLQVFVLEELMGECYAPITVKGKEVRSLRYLETLECHFE 685

Query: 300 TLNDFNIYVKSTDGRGS-KNYCLL------------------------LSASGKRGF-LE 333
             +DF  Y++S DG  S   Y +L                        LS +G R F ++
Sbjct: 686 GFSDFVEYLRSRDGILSLSTYKVLVGEVGRYLEQWIEDYPSKTVGLGNLSINGNRDFQVK 745

Query: 334 VDKSVRLFACKICETEE--TIVLPEDVQYLEMFGVDDVASLNDVL---------PRE--- 379
               ++   C+  +      ++  E+   LE   + D  ++  ++         PR    
Sbjct: 746 FLNGIQGLICQCIDARSLCDVLSLENATELERISIRDCNNMESLVSSSWFCSAPPRNGTF 805

Query: 380 QGL------------NLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTI 427
            GL             LF L LLP L NLE + V +C  +EEI+   DEE+    +T+  
Sbjct: 806 SGLKEFFCYNCGSMKKLFPLVLLPNLVNLERIEVSFCEKMEEIIGTTDEES----STSNS 861

Query: 428 INTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQ 487
           I  V LP+L+ L L  L E KSICS    L+CNSL++I++  C KLKR+ + LPLL+NGQ
Sbjct: 862 ITEVILPKLRSLALYVLPELKSICSAK--LICNSLEDIKLMYCEKLKRMPICLPLLENGQ 919

Query: 488 PSPPPALE-VIEIKKELWES-LEWDQPNAKDVLNPY 521
           PSPPP+L  V    KE WE+ +E + PNAKDVL P+
Sbjct: 920 PSPPPSLRTVYSWPKEWWETVVECEHPNAKDVLRPF 955

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106119|ref|XP_002333721.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222838363|gb|EEE76728.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 228/614 (37%), Positives = 313/614 (50%), Gaps = 122/614 (19%)

Query: 13  IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELR-GRLRSLNDVDTKVFGRLEF 71
           I   V  EC  LPL I+TVA S+ G ++++EW+N L +L+    R     D +VF  L F
Sbjct: 281 IAKAVARECDGLPLGIITVAGSLRGVDDLHEWRNTLKKLKESEFR-----DNEVFKLLRF 335

Query: 72  SYHRLKDEKLQQCFLYCAL-----GHTILNRLVNCCLLESAK----DGSCVKMHDLIRDM 122
           SY RL D  LQQC LYCAL     GHT+LNRL   CLLE AK    D  CVKMHDLIRDM
Sbjct: 336 SYDRLGDLALQQCLLYCALFPEDHGHTMLNRLEYVCLLEGAKMESDDSRCVKMHDLIRDM 395

Query: 123 ALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLL 182
           A++I  ++   MV AG +L + P  +EW ENL RVSLM N  +EIPS+ SP C  LSTLL
Sbjct: 396 AIQILLENSQGMVKAGAQLKELPDAEEWTENLTRVSLMRNYIKEIPSSYSPRCPYLSTLL 455

Query: 183 LQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWC-------- 234
           L  N++L+ I + FF  +HGLKVL+L  T IE LP+SVSDL +L +LLL  C        
Sbjct: 456 LCQNRWLRFIADSFFKQLHGLKVLDLSWTDIEKLPDSVSDLASLTALLLNDCESLRHVSS 515

Query: 235 ---------------GILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLF 278
                          G L+++P  +  L  L+YL + G   +E P G  +L  LSHL +F
Sbjct: 516 LKKLKALKRLDLSRTGALEKMPQGMECLTNLRYLRMNGCGEKEFPSG--ILPKLSHLQVF 573

Query: 279 --------------MAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGS-KNYCLLL 323
                         +  +E   L + L+T   +F   +DF  YV+S DG  S   Y +L+
Sbjct: 574 VLEEFMPQDDAPITVKGKEVGSLRN-LETLECHFEGFSDFVEYVRSGDGILSLSTYKILV 632

Query: 324 SASGKR---------------GFLEVDKSVRLFACK--------ICETEET-----IVLP 355
              G+                G L ++   R F  K        ICE+ +      ++  
Sbjct: 633 GEVGRYSEQLIEDFPSKTVGLGNLSINGD-RDFQVKFLNGIQGLICESIDARSLCDVLSL 691

Query: 356 EDVQYLEMFGVDDVASLNDVLPRE---------------QGLNLFSLRLLPALQNL---- 396
           E+   LE   + +  ++  ++                   GL  F      +++ L    
Sbjct: 692 ENATELERISIRECHNMESLVSSSWFCSAPPPLPCNGTFSGLKEFFCYRCKSMKKLFPLV 751

Query: 397 --------EVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFK 448
                   E + V  C  +EEI+   DEE+    +T+  I    LP+L+ L L  L E K
Sbjct: 752 LLPNLVNLERIEVNDCEKMEEIIGTTDEES----STSNSITEFILPKLRTLRLVILPELK 807

Query: 449 SICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWES-L 507
           SICS    ++CNSL++I V  C KLKR+ + LPL +NGQPS  P L +    KE WE+ +
Sbjct: 808 SICS--AKVICNSLEDISVMYCEKLKRMPICLPLRENGQPS--PFLNIQACPKEWWETVV 863

Query: 508 EWDQPNAKDVLNPY 521
           EW+ PNAKDVL+P+
Sbjct: 864 EWEHPNAKDVLHPF 877

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.351	0.199	0.361	1.1e-36
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.426	0.225	0.333	1.8e-33
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.349	0.213	0.377	6.8e-24
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.282	0.166	0.407	1.1e-23
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.261	0.149	0.342	4.7e-23
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.282	0.164	0.407	8.5e-23
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.257	0.149	0.368	1.3e-22
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.280	0.162	0.345	2e-21
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.351	0.207	0.357	3.5e-21
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.261	0.153	0.383	6.4e-21

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
 Identities = 68/188 (36%), Positives = 108/188 (57%)

Query:    91 GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALR-ITSKSPLF--MVTAGLRLLKFPGE 147
             G T++ RL + CLLE       VKMHD++RD A+  ++S+   F  +V AG  L++FP +
Sbjct:   407 GVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFP-Q 465

Query:   148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLN 207
              ++  +++RVSLM N  E +P+N+    E L  LLLQ N +++ +P  F      L++L+
Sbjct:   466 DKFVSSVQRVSLMANKLERLPNNVIEGVETL-VLLLQGNSHVKEVPNGFLQAFPNLRILD 524

Query:   208 LCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSXXXXXXXXXXXXEGTWIEEVPEGME 267
             L    I  LP+S S+L +LRSL+LR C  L+ +PS              + I E+P G+E
Sbjct:   525 LSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLE 584

Query:   268 MLENLSHL 275
              L +L ++
Sbjct:   585 ALSSLRYI 592

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
 Identities = 78/234 (33%), Positives = 110/234 (47%)

Query:    91 GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSP-----LFMVTAGLRLLKFP 145
             G T +  L + CLLE       VKMHD++RD A+ I S S      L M   GL+ ++  
Sbjct:   438 GITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIR-- 495

Query:   146 GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKV 205
              + +   +L RVSLM N  E +P  +   C   S LLLQ N  L+ +P  F      L++
Sbjct:   496 -QDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRI 554

Query:   206 LNLCHTSIEVLPN-SVSDLTNLRSLLLRWCGILKRVPSXXXXXXXXXXXXEGTWIEEVPE 264
             LNL  T I+  P+ S+  L +L SL LR C  L ++PS             GT I E P 
Sbjct:   555 LNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPR 614

Query:   265 GMEMLENLSHLSLFMAAE-EA--ARLSDRLDTFVGYFSTLNDFNIYVKSTDGRG 315
             G+E L+   HL L      E+  AR+  RL +      T + +   V+    +G
Sbjct:   615 GLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWSVQGETQKG 668

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
 Identities = 74/196 (37%), Positives = 100/196 (51%)

Query:    91 GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPG 146
             GH I+  LV   LL   +  + VKMHD+IR+MAL I S    +     V  G++L   P 
Sbjct:   449 GHDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWIASNFGKQKETLCVKPGVQLCHIPK 508

Query:   147 EQEWEENLERVSLMENDFEEIPSNM-SPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKV 205
             +  WE +L R+SLM N    I S+  SP+   LSTLLLQ+NK L  I   FF  M  L V
Sbjct:   509 DINWE-SLRRMSLMCNQIANISSSSNSPN---LSTLLLQNNK-LVHISCDFFRFMPALVV 563

Query:   206 LNLC-HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SXXXXXXXXXXXXEGT-WIEEV 262
             L+L  ++S+  LP ++S L +L+ + L   GI K +P S            E T  +E +
Sbjct:   564 LDLSRNSSLSSLPEAISKLGSLQYINLSTTGI-KWLPVSFKELKKLIHLNLEFTDELESI 622

Query:   263 PEGMEMLENLSHLSLF 278
                   L NL  L LF
Sbjct:   623 VGIATSLPNLQVLKLF 638

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
 Identities = 64/157 (40%), Positives = 87/157 (55%)

Query:    91 GHTILNRLV-NCCLLESAKDGSCVKMHDLIRDMALRITSK----SPLFMVTAGLRLLKFP 145
             G+ IL  LV +  LLE AKD   V MHD++R+MAL I S         +V AG+ L + P
Sbjct:   451 GYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDELP 510

Query:   146 GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKV 205
               + W   ++R+SLM N+FE+I    SP C  L TL LQ+N  L  I   FF  M  L V
Sbjct:   511 EVENWRA-VKRMSLMNNNFEKILG--SPECVELITLFLQNNYKLVDISMEFFRCMPSLAV 567

Query:   206 LNLCHT-SIEVLPNSVSDLTNLRSLLLRWCGILKRVP 241
             L+L    S+  LP  +S+L +L+ L L    I +R+P
Sbjct:   568 LDLSENHSLSELPEEISELVSLQYLDLSGTYI-ERLP 603

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 4.7e-23, Sum P(3) = 4.7e-23
 Identities = 49/143 (34%), Positives = 80/143 (55%)

Query:    91 GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKS----PLFMVTAGLRLLKFPG 146
             G+ ++  L   CLLE+  + + VKMH+++R  AL + S+      L +V   +   + P 
Sbjct:   447 GYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPK 506

Query:   147 EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVL 206
              + W + L  +SL++N  + +P  +   C  L+TL+LQ N  L++IP  FF+HM  L+VL
Sbjct:   507 AENWRQALV-ISLLDNRIQTLPEKLI--CPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVL 563

Query:   207 NLCHTSIEVLPNSVSDLTNLRSL 229
             +L  TSI  +P S+  L  L  L
Sbjct:   564 DLSFTSITEIPLSIKYLVELYHL 586

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 8.5e-23, Sum P(3) = 8.5e-23
 Identities = 64/157 (40%), Positives = 89/157 (56%)

Query:    91 GHTILNRLVNCCLL-ESAKDGSCVKMHDLIRDMALRITSK----SPLFMVTAGLRLLKFP 145
             G+ I+  LV  CLL E A +   VKMHD++R+MAL I S         +V  G+ L + P
Sbjct:   451 GYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVP 510

Query:   146 GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKV 205
               + W  ++ R+SLMEN+ E +    SP C  L+TL LQ N  L  I + FF  +  L V
Sbjct:   511 KVKNWS-SVRRMSLMENEIEILSG--SPECLELTTLFLQKNDSLLHISDEFFRCIPMLVV 567

Query:   206 LNLC-HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP 241
             L+L  ++S+  LPN +S L +LR L L W  I KR+P
Sbjct:   568 LDLSGNSSLRKLPNQISKLVSLRYLDLSWTYI-KRLP 603

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
 Identities = 53/144 (36%), Positives = 77/144 (53%)

Query:    91 GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPG 146
             G+ +L  L    LL       CV MHD++R+MAL I S    +   F+V AG+ L + P 
Sbjct:   448 GYAMLGTLTRANLLTKVGTYYCV-MHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPK 506

Query:   147 EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVL 206
              ++W   + ++SLM+ND EEI       C  L+TL LQ NK L+ +P  F  +M  L VL
Sbjct:   507 VKDWGA-VRKMSLMDNDIEEITCESK--CSELTTLFLQSNK-LKNLPGAFIRYMQKLVVL 562

Query:   207 NLCHT-SIEVLPNSVSDLTNLRSL 229
             +L +      LP  +S L +L+ L
Sbjct:   563 DLSYNRDFNKLPEQISGLVSLQFL 586

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.0e-21, Sum P(4) = 2.0e-21
 Identities = 55/159 (34%), Positives = 88/159 (55%)

Query:    91 GHTILNRLVNCCLL--ESAKDGS-CVKMHDLIRDMALRITS----KSPLFMVTAGLRLLK 143
             G+ I+  LV   LL  E   DG+  V +HD++R+MAL I S    ++  F+V A + L +
Sbjct:   448 GYEIIGSLVRASLLMEEVELDGANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLRE 507

Query:   144 FPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGL 203
                 + W   + R+SLM+N+   +   +   C  L+TLLLQ + +L++I   FF  M  L
Sbjct:   508 ILKVENWNV-VRRMSLMKNNIAHLDGRLD--CMELTTLLLQ-STHLEKISSEFFNSMPKL 563

Query:   204 KVLNLC-HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP 241
              VL+L  +  +  LPN +S+L +L+ L L   GI + +P
Sbjct:   564 AVLDLSGNYYLSELPNGISELVSLQYLNLSSTGI-RHLP 601

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.5e-21, Sum P(3) = 3.5e-21
 Identities = 70/196 (35%), Positives = 100/196 (51%)

Query:    91 GHTILNRLVNCCLL-ESAK--DGSCVKMHDLIRDMALRITSK----SPLFMVTAGLRLLK 143
             G+ IL  LV   LL E  K  + S VKMHD++R+MAL I S         +V AG RL +
Sbjct:   451 GYEILGTLVCASLLVEGGKFNNKSYVKMHDVVREMALWIASDLRKHKDNCIVRAGFRLNE 510

Query:   144 FPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGL 203
              P  ++W+  + R+SL+ N  +EI    SP C  L+TL LQ N++L  I   FF  M  L
Sbjct:   511 IPKVKDWKV-VSRMSLVNNRIKEIHG--SPECPKLTTLFLQDNRHLVNISGEFFRSMPRL 567

Query:   204 KVLNLC-HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SXXXXXXXXXXXXEGTWIEE 261
              VL+L  + ++  LP+ +S+L +LR L L +  I  R+P              E     E
Sbjct:   568 VVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSI-GRLPVGLLKLKKLMHLNLESMLCLE 626

Query:   262 VPEGMEMLENLSHLSL 277
                G++ L NL  + L
Sbjct:   627 SVSGIDHLSNLKTVRL 642

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
 Identities = 56/146 (38%), Positives = 80/146 (54%)

Query:    91 GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITS----KSPLFMVTAGLRLLKFPG 146
             G+ I+  LV  CLL   ++   VKMHD++R+MAL I S    +   F+V AGL+    P 
Sbjct:   448 GYEIIGILVRSCLLME-ENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPE 506

Query:   147 EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVL 206
              ++W+    RVSLM N+ E I    +P    L TLLL+ N +L  I   FF  M  L VL
Sbjct:   507 IEKWKV-ARRVSLMFNNIESIRD--APESPQLITLLLRKN-FLGHISSSFFRLMPMLVVL 562

Query:   207 NLC-HTSIEVLPNSVSDLTNLRSLLL 231
             +L  +  +  LPN +S+  +L+ L L
Sbjct:   563 DLSMNRDLRHLPNEISECVSLQYLSL 588

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.04330003 BED finger-nbs-lrr resistance protein (1077 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	521
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	2e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 12  EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEF 71
           E+  E+VE+C  LPLA+  +   ++ +  + EW++ L +L   L    D   +V   L  
Sbjct: 182 EVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAG-RDGLNEVLSILSL 240

Query: 72  SYHRLKDEKLQQCFLYCAL 90
           SY  L    L++CFLY AL
Sbjct: 241 SYDNLPMH-LKRCFLYLAL 258

Length = 285

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 178 LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRWCGI 236
           L +L L +N+ L  IP+  F  +  LKVL+L   ++  + P + S L +LRSL L    +
Sbjct: 2   LKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L  N+  +IP  +      L  L L  NK    +P     ++  LK L+L    
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLR-NLPNLKNLDLSFND 174

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  LP  +S+L+NL +L L    I    P +  L AL+ LDL    I E+   +  L+NL
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Query: 273 SHLSL 277
           S L L
Sbjct: 235 SGLEL 239

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 18/141 (12%)

Query: 139 LRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECF-- 196
           L L +   E+ WE       LM          M      L+ L L     L  +P     
Sbjct: 752 LILCEMKSEKLWERVQPLTPLM---------TMLSPS--LTRLFLSDIPSLVELPSSIQN 800

Query: 197 FVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEG 256
              +  L++ N C  ++E LP  + +L +L SL L  C  L+  P ++    +  L+L  
Sbjct: 801 LHKLEHLEIEN-C-INLETLPTGI-NLESLESLDLSGCSRLRTFPDIST--NISDLNLSR 855

Query: 257 TWIEEVPEGMEMLENLSHLSL 277
           T IEEVP  +E   NLS L +
Sbjct: 856 TGIEEVPWWIEKFSNLSFLDM 876

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L  N   ++P  +      L  L L +N  ++ +          L  L L +  
Sbjct: 187 NLNNLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIE-LLSSLSNLK-NLSGLELSNNK 243

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEG 256
           +E LP S+ +L+NL +L L     +  + SL  L  L+ LDL G
Sbjct: 244 LEDLPESIGNLSNLETLDLS-NNQISSISSLGSLTNLRELDLSG 286

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL+ + L  N    IP         L  L L  N  L  I    F  +  L+ L+L   +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNN 59

Query: 213 I 213
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	521
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.55
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.38
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.18
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.15
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.75
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.7
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.49
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.44
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
PLN03150	623	hypothetical protein; Provisional	98.25
PLN03150	623	hypothetical protein; Provisional	98.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.18
PRK15386	426	type III secretion protein GogB; Provisional	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG4341	483	consensus F-box protein containing LRR [General fu	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.49
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.77
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.75
KOG4341	483	consensus F-box protein containing LRR [General fu	96.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.73
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.07
smart00370	26	LRR Leucine-rich repeats, outliers.	87.64
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.53
smart00370	26	LRR Leucine-rich repeats, outliers.	86.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.83
PRK04841	903	transcriptional regulator MalT; Provisional	86.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.5
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.02

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-47  Score=412.90  Aligned_cols=484  Identities=29%  Similarity=0.371  Sum_probs=339.0

Q ss_pred             CChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCC-CchhhHHHHHHHHhHhcCCchhHHHH
Q 041519            6 VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-NDVDTKVFGRLEFSYHRLKDEKLQQC   84 (521)
Q Consensus         6 ~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-~~~~~~i~~~L~lSY~~L~~~~lk~c   84 (521)
                      ..+.++++|++||+||+|+|||++++|++|+.|.++.+|+++.+.+..+...+ +++++.|+++|++|||.|| +++|.|
T Consensus       337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~C  415 (889)
T KOG4658|consen  337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSC  415 (889)
T ss_pred             ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHH
Confidence            33448999999999999999999999999999999999999999886663332 4667899999999999999 999999


Q ss_pred             HHHHHH----------------------------------HhHHHHHHHHccccccccCC---CccccchHHHHHHHHHh
Q 041519           85 FLYCAL----------------------------------GHTILNRLVNCCLLESAKDG---SCVKMHDLIRDMALRIT  127 (521)
Q Consensus        85 fl~~s~----------------------------------g~~~~~~L~~~~l~~~~~~~---~~~~mhdli~dl~~~i~  127 (521)
                      |+|||+                                  |+.|+++|++++|++..+..   .+|+|||+|||||..+|
T Consensus       416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia  495 (889)
T KOG4658|consen  416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA  495 (889)
T ss_pred             HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence            999998                                  88999999999999988742   79999999999999999


Q ss_pred             c-----cCCcEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcC-CCCCchhHhhCCC
Q 041519          128 S-----KSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY-LQRIPECFFVHMH  201 (521)
Q Consensus       128 ~-----~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~  201 (521)
                      +     ++. .++..+.....+|....+ ...|++++.++.+..++...  .+++|++|.+.+|.. +..++..+|..++
T Consensus       496 s~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~  571 (889)
T KOG4658|consen  496 SDFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLP  571 (889)
T ss_pred             ccccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCc
Confidence            9     565 555555566667766555 68999999999999888774  677999999999974 7888888899999


Q ss_pred             CCcEEEccCCC-CCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccc
Q 041519          202 GLKVLNLCHTS-IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLF  278 (521)
Q Consensus       202 ~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~  278 (521)
                      .|++|||++|. +.++|.+|+.|.|||||+++++ .+..+| ++++|.+|.+|++..+ .+..+|..+..|.+|++|.+.
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            99999999874 7899999999999999999995 599999 9999999999999999 566666666679999999887


Q ss_pred             cc--------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeec----CCCCCCccccceeeeeeeeee
Q 041519          279 MA--------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSA----SGKRGFLEVDKSVRLFACKIC  346 (521)
Q Consensus       279 ~~--------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~----~~~~~~~~~~~~~~L~~L~i~  346 (521)
                      ..        ..++.+|+ .|+.+.+...+. .....+   ..+..|..+.....    ...........+.+|++|.|.
T Consensus       651 ~s~~~~~~~~l~el~~Le-~L~~ls~~~~s~-~~~e~l---~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~  725 (889)
T KOG4658|consen  651 RSALSNDKLLLKELENLE-HLENLSITISSV-LLLEDL---LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL  725 (889)
T ss_pred             ccccccchhhHHhhhccc-chhhheeecchh-HhHhhh---hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence            54        23344444 555554433332 111111   11222221111100    000011112223355555555


Q ss_pred             cCcccccCccccceEEEecccCcccccc-cccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcc
Q 041519          347 ETEETIVLPEDVQYLEMFGVDDVASLND-VLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATN  425 (521)
Q Consensus       347 ~~~~~~~~p~~L~~L~l~~~~~l~~l~~-~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~  425 (521)
                      .+........+.+......  .+.++.. .+.++.+. ..+.|. .-.++|+.|.+..|..++++++........     
T Consensus       726 ~~~~~e~~~~~~~~~~~~~--~f~~l~~~~~~~~~~~-r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l-----  796 (889)
T KOG4658|consen  726 DCGISEIVIEWEESLIVLL--CFPNLSKVSILNCHML-RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLEL-----  796 (889)
T ss_pred             cCCCchhhcccccccchhh--hHHHHHHHHhhccccc-cccchh-hccCcccEEEEecccccccCCCHHHHhhhc-----
Confidence            4422111111111111000  0000000 01112221 223333 456899999999999988877654222111     


Q ss_pred             cccccccCCcccee-ecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCc-ccCCCCCCCCCCceEEEee-hh
Q 041519          426 TIINTVTLPRLKKL-HLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLP-LLDNGQPSPPPALEVIEIK-KE  502 (521)
Q Consensus       426 ~~~~~~~f~~L~~L-~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~-~l~~~~~~~~~~L~~l~~~-~~  502 (521)
                       ......|++++.+ .+.+.+.++++..  ....+++|+.+.+..||+++.+|.... .+.+     +. =+.+... .+
T Consensus       797 -~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~-----~~-~~~~~~~~~~  867 (889)
T KOG4658|consen  797 -KELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLGKLPLLSTLTIVG-----CE-EKLKEYPDGE  867 (889)
T ss_pred             -ccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCcccccCccccccceec-----cc-cceeecCCcc
Confidence             0012467888888 5888888888877  566788999999999999999998532 2222     10 1122222 67


Q ss_pred             hccccccCCcchhhhc
Q 041519          503 LWESLEWDQPNAKDVL  518 (521)
Q Consensus       503 ~~~~l~~~~~~~~~~~  518 (521)
                      |.+.++|++.+.+..|
T Consensus       868 ~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  868 WLEGVYWEDELTKLRF  883 (889)
T ss_pred             ceeeEEehhhhhhhhc
Confidence            8899999998877655

>PLN03210 Resistant to P

Probab=100.00  E-value=6e-40  Score=371.92  Aligned_cols=279  Identities=25%  Similarity=0.337  Sum_probs=189.0

Q ss_pred             CCChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHH
Q 041519            5 QVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQC   84 (521)
Q Consensus         5 ~~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~c   84 (521)
                      ..|+++++++++||++|+|+|||++++|+.|+++ +.++|+.++++++...      +++|.++|++||++|++...|.|
T Consensus       369 ~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~  441 (1153)
T PLN03210        369 SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAI  441 (1153)
T ss_pred             CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhh
Confidence            3567899999999999999999999999999995 7899999999986532      36899999999999984469999


Q ss_pred             HHHHHH--------------------HhHHHHHHHHccccccccCCCccccchHHHHHHHHHhccCC------cEEEecC
Q 041519           85 FLYCAL--------------------GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSP------LFMVTAG  138 (521)
Q Consensus        85 fl~~s~--------------------g~~~~~~L~~~~l~~~~~~~~~~~mhdli~dl~~~i~~~~~------~~~~~~~  138 (521)
                      |+|||+                    .+..++.|+++|||+...  ..++|||++|+||+.+++++.      .+++...
T Consensus       442 Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~  519 (1153)
T PLN03210        442 FRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK  519 (1153)
T ss_pred             hheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH
Confidence            999998                    223478999999998765  579999999999999987652      1111100


Q ss_pred             ------------cccc-------------cCCCcccccCCccEEEeecCCCC-------CCCCCcCCCCCCccEEEcccC
Q 041519          139 ------------LRLL-------------KFPGEQEWEENLERVSLMENDFE-------EIPSNMSPHCEILSTLLLQHN  186 (521)
Q Consensus       139 ------------~~~~-------------~~p~~~~~~~~l~~L~l~~~~~~-------~l~~~~~~~l~~L~~L~l~~~  186 (521)
                                  ..+.             --+..+..+.+++.|.+..+...       .+|.++..-..+||.|.+.++
T Consensus       520 di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~  599 (1153)
T PLN03210        520 DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY  599 (1153)
T ss_pred             HHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC
Confidence                        0000             00111334556666666544321       234333211135666666666


Q ss_pred             cCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCC-cCcccCcc
Q 041519          187 KYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT-WIEEVPEG  265 (521)
Q Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~-~l~~lp~~  265 (521)
                      . +..+|..+  .+.+|+.|+++++.+..+|.++..+.+|++|++++|..+..+|.++.+.+|++|++++| .+..+|..
T Consensus       600 ~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        600 P-LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             C-CCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh
Confidence            5 66666654  45666677776666666666666666777777766666666666666666777777666 56666666


Q ss_pred             ccCCCCCcccccccc------hHHHHhhHhcccceEEE
Q 041519          266 MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGY  297 (521)
Q Consensus       266 i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~  297 (521)
                      ++++++|++|++..+      |..+ +++ +|+.|.+.
T Consensus       677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~-sL~~L~Ls  712 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCENLEILPTGI-NLK-SLYRLNLS  712 (1153)
T ss_pred             hhccCCCCEEeCCCCCCcCccCCcC-CCC-CCCEEeCC
Confidence            666666666666543      2222 455 55555543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=8.1e-20  Score=207.34  Aligned_cols=326  Identities=17%  Similarity=0.235  Sum_probs=183.5

Q ss_pred             CCCcccccCCccEEEeecCCCC-CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCcccc
Q 041519          144 FPGEQEWEENLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVS  221 (521)
Q Consensus       144 ~p~~~~~~~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~  221 (521)
                      ++.....+++++.|++++|.+. .+|..++..+++|++|++++|.....+|.   +.+++|++|++++|.+. .+|..++
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~  161 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIG  161 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHh
Confidence            3444556678888888888876 67777766788888888888874445554   45777888888888776 6777788


Q ss_pred             CCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCCCCcccccccc------hHHHHhhHhcccc
Q 041519          222 DLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDT  293 (521)
Q Consensus       222 ~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~  293 (521)
                      .+.+|++|++++|.....+| .++++.+|++|++++|.+. .+|..++++++|++|++...      +..++.++ +|+.
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~  240 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNH  240 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCE
Confidence            88888888888876555677 7888888888888888655 57777888888888877543      56777888 8888


Q ss_pred             eEEEeccccc-hhhhhhccCCCCCCcceeeeecCCCC-CCccccceeeeeeeeeecCcccccCc------cccceEEEec
Q 041519          294 FVGYFSTLND-FNIYVKSTDGRGSKNYCLLLSASGKR-GFLEVDKSVRLFACKICETEETIVLP------EDVQYLEMFG  365 (521)
Q Consensus       294 L~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~~~~L~~L~i~~~~~~~~~p------~~L~~L~l~~  365 (521)
                      |++..+.... ....   ...+.+|+.+.+....... .........+|+.|.++++.....+|      ++|+.|++.+
T Consensus       241 L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        241 LDLVYNNLTGPIPSS---LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             EECcCceeccccChh---HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence            8776554432 1222   2234455555443221110 01112234466666666553322222      3456666555


Q ss_pred             ccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcch-h-------hhhhhcccccccccCCccc
Q 041519          366 VDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEE-T-------EKELATNTIINTVTLPRLK  437 (521)
Q Consensus       366 ~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~-~-------~~~~~~~~~~~~~~f~~L~  437 (521)
                      +.-...             .|. .+..+++|+.|++++|.....++...... .       ...+.+..+.....+++|+
T Consensus       318 n~~~~~-------------~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  383 (968)
T PLN00113        318 NNFTGK-------------IPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF  383 (968)
T ss_pred             CccCCc-------------CCh-hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence            422111             111 12345555555555443322222111000 0       0000000000112345555


Q ss_pred             eeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          438 KLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       438 ~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      .|++.++.-...++.  ....+++|+.|++.+|.--..+|..+..        +++|+.+++.
T Consensus       384 ~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~Ls  436 (968)
T PLN00113        384 KLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSEFTK--------LPLVYFLDIS  436 (968)
T ss_pred             EEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECChhHhc--------CCCCCEEECc
Confidence            555555433223332  2234577777777777654456655544        3448888876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=5.2e-19  Score=200.73  Aligned_cols=149  Identities=23%  Similarity=0.360  Sum_probs=105.8

Q ss_pred             ccCCccEEEeecCCCC-CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccc
Q 041519          150 WEENLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLR  227 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~  227 (521)
                      .++++++|++++|.+. .+|..+ ..+++|++|++++|.....+|..+ +++++|++|++++|.+. .+|..++++.+|+
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            3567888888887776 344444 377788888888777445666654 77888888888877766 6677777888888


Q ss_pred             eeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEec
Q 041519          228 SLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFS  299 (521)
Q Consensus       228 ~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~  299 (521)
                      +|++++|.....+| .++++.+|++|++++|.+. .+|..++++++|++|++..+      +..++.++ +|+.|++..+
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n  294 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDN  294 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCC
Confidence            88887776555677 6777888888888877655 56777777777777776543      55677777 7777776554


Q ss_pred             cc
Q 041519          300 TL  301 (521)
Q Consensus       300 ~~  301 (521)
                      ..
T Consensus       295 ~l  296 (968)
T PLN00113        295 SL  296 (968)
T ss_pred             ee
Confidence            43

>PLN03210 Resistant to P

Probab=99.79  E-value=1.6e-18  Score=197.52  Aligned_cols=300  Identities=19%  Similarity=0.234  Sum_probs=199.0

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC-CCccCccccCCccccee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS-IEVLPNSVSDLTNLRSL  229 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L  229 (521)
                      ..++|.|.+.++.+..+|..+  ...+|+.|++.++. +..++.++ ..+++|++|+++++. +..+|. ++.+++|++|
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~-l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L  662 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSK-LEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL  662 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcc-cccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence            357999999999999999886  56899999999998 88888876 889999999999875 667775 8899999999


Q ss_pred             ecccCCCCCccC-CccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccccch--HHH-HhhHhcccceEEEeccccch
Q 041519          230 LLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLFMAA--EEA-ARLSDRLDTFVGYFSTLNDF  304 (521)
Q Consensus       230 ~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~~~~--~~i-~~L~~~L~~L~~~~~~~~~~  304 (521)
                      ++++|..+..+| +++++.+|+.|++++| .++.+|.++ ++++|++|.+.++.  ..+ ...+ +|+.|++..+....+
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~-nL~~L~L~~n~i~~l  740 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEF  740 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccC-CcCeeecCCCccccc
Confidence            999999999999 8999999999999999 899999877 78999999887662  111 1234 777787765554433


Q ss_pred             hhhhhccCCCCCCcceeeeecC---C-----CCCCccccceeeeeeeeeecCcccccC------ccccceEEEecccCcc
Q 041519          305 NIYVKSTDGRGSKNYCLLLSAS---G-----KRGFLEVDKSVRLFACKICETEETIVL------PEDVQYLEMFGVDDVA  370 (521)
Q Consensus       305 ~~~~~~~~~l~~L~~l~~~~~~---~-----~~~~~~~~~~~~L~~L~i~~~~~~~~~------p~~L~~L~l~~~~~l~  370 (521)
                      ...+    .+.+|..+.+....   .     ...........+|+.|.++++.....+      .++|+.|++.+|..+.
T Consensus       741 P~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        741 PSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             cccc----cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            3221    23334333322100   0     000001112246666776665322222      3456777777666544


Q ss_pred             cccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhc----ccccccccCCccceeecCCccc
Q 041519          371 SLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELAT----NTIINTVTLPRLKKLHLEDLRE  446 (521)
Q Consensus       371 ~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~----~~~~~~~~f~~L~~L~l~~~~~  446 (521)
                      .+|             ...  .+++|++|+|++|..+..++........-.+.+    ..+.....+++|+.|++.+|++
T Consensus       817 ~LP-------------~~~--~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        817 TLP-------------TGI--NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             eeC-------------CCC--CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence            433             222  456667777777766655443210000000000    0111224678888888888888


Q ss_pred             ccccccCCCcccCCCccEEEEecCCCcccccC
Q 041519          447 FKSICSDNGVLVCNSLQEIEVYNCPKLKRLSL  478 (521)
Q Consensus       447 L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~  478 (521)
                      |+.++.  ....+++|+.+++.+|++|+.++.
T Consensus       882 L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        882 LQRVSL--NISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             cCccCc--ccccccCCCeeecCCCcccccccC
Confidence            888877  444568888888888888876543

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=4.9e-21  Score=189.70  Aligned_cols=148  Identities=23%  Similarity=0.391  Sum_probs=112.7

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcC-CCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY-LQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ++..+..++..+|.....+.++.||++.+|++..+..++. .++.||.+.+..|+. -..+|+++| .+..|.+|||++|
T Consensus        36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN  113 (1255)
T KOG0444|consen   36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN  113 (1255)
T ss_pred             EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence            5555666777888888888888888888888887777665 778888888877763 245777764 6788888888888


Q ss_pred             CCCccCccccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccchHH
Q 041519          212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEE  283 (521)
Q Consensus       212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~  283 (521)
                      ++.+.|..+..-+++-+|++++|. +..+| + +.+|.-|-+||+++|.+..+|..+..|..|++|.+...|-.
T Consensus       114 qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  114 QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            888888877777788888888764 77887 4 66778888888888888888888888888888877776544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=5.5e-20  Score=182.30  Aligned_cols=271  Identities=20%  Similarity=0.276  Sum_probs=152.4

Q ss_pred             cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccC
Q 041519          143 KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSD  222 (521)
Q Consensus       143 ~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~  222 (521)
                      .+|.....++.++.|+++.|.+.+.|..+. .-+++-+|++++|+ +.++|..+|-++.-|-+|||++|.+..+|+.+..
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhh-hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            456666666677777777777777776664 55667777777776 7777776666777777777777777777776777


Q ss_pred             CcccceeecccCCCCCccC--CccCCCCCCEEEeeCC--cCcccCccccCCCCCcccccccc-----hHHHHhhHhcccc
Q 041519          223 LTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGT--WIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDT  293 (521)
Q Consensus       223 L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~--~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~  293 (521)
                      |.+|++|++++|+ +...-  .+-.+.+|++|.++++  -+..+|.++..|.+|+.++++..     |..+-++. +|+.
T Consensus       172 L~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~Lrr  249 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRR  249 (1255)
T ss_pred             HhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhhe
Confidence            7777777777665 32221  2334566666666666  33466666666666666666532     55566666 6666


Q ss_pred             eEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccC------ccccceEEEeccc
Q 041519          294 FVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVL------PEDVQYLEMFGVD  367 (521)
Q Consensus       294 L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~------p~~L~~L~l~~~~  367 (521)
                      |+++.+.++.+.......                          .+|++|+++.+... .+      .+.|++|...+..
T Consensus       250 LNLS~N~iteL~~~~~~W--------------------------~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  250 LNLSGNKITELNMTEGEW--------------------------ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             eccCcCceeeeeccHHHH--------------------------hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence            665544443322111111                          13333333333110 01      1233333322210


Q ss_pred             CcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccc
Q 041519          368 DVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREF  447 (521)
Q Consensus       368 ~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L  447 (521)
                               -.   ..-+|.++ +.|.+|+.+...+. +++-+|+..                +.+++|+.|.+.. ..|
T Consensus       303 ---------L~---FeGiPSGI-GKL~~Levf~aanN-~LElVPEgl----------------cRC~kL~kL~L~~-NrL  351 (1255)
T KOG0444|consen  303 ---------LT---FEGIPSGI-GKLIQLEVFHAANN-KLELVPEGL----------------CRCVKLQKLKLDH-NRL  351 (1255)
T ss_pred             ---------cc---ccCCccch-hhhhhhHHHHhhcc-ccccCchhh----------------hhhHHHHHhcccc-cce
Confidence                     00   12234444 55666666666543 344333322                4567777777754 556


Q ss_pred             cccccCCCcccCCCccEEEEecCCCccccc
Q 041519          448 KSICSDNGVLVCNSLQEIEVYNCPKLKRLS  477 (521)
Q Consensus       448 ~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP  477 (521)
                      -.+|.  ++..+|-|+.|++++.|+|.--|
T Consensus       352 iTLPe--aIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  352 ITLPE--AIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             eechh--hhhhcCCcceeeccCCcCccCCC
Confidence            66665  55556777777777777776444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.70  E-value=1.7e-18  Score=170.70  Aligned_cols=315  Identities=19%  Similarity=0.195  Sum_probs=160.8

Q ss_pred             CcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-
Q 041519          138 GLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-  216 (521)
Q Consensus       138 ~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-  216 (521)
                      .+.+..+|.......++.+|++.+|.|.++..+..+.++.||+|+++.|. +..+|..-|..-.++++|+|++|.|+.+ 
T Consensus       111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~  189 (873)
T KOG4194|consen  111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLE  189 (873)
T ss_pred             cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccc
Confidence            34455566555555566666666666666655544456666666666666 6666654445556666667666666644 


Q ss_pred             CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hHHHHhh
Q 041519          217 PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AEEAARL  287 (521)
Q Consensus       217 p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~~i~~L  287 (521)
                      -..|..|.+|.+|.++.|. +..+|  .|.+|++|+.|++..|.++.+ -..|..|.+|+.|.+...      ...+-.+
T Consensus       190 ~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l  268 (873)
T KOG4194|consen  190 TGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL  268 (873)
T ss_pred             cccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence            2445566666666666654 66666  455566777776666655543 223555566655554322      1112334


Q ss_pred             HhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEeccc
Q 041519          288 SDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVD  367 (521)
Q Consensus       288 ~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~  367 (521)
                      . ++++|++..+.+....+  ..+-.++.|+.+.++....             +.+.+.+    -.|.+.|+.|+++.. 
T Consensus       269 ~-kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI-------------~rih~d~----WsftqkL~~LdLs~N-  327 (873)
T KOG4194|consen  269 E-KMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAI-------------QRIHIDS----WSFTQKLKELDLSSN-  327 (873)
T ss_pred             c-ccceeecccchhhhhhc--ccccccchhhhhccchhhh-------------heeecch----hhhcccceeEecccc-
Confidence            4 55555554444332211  1122234444443332211             1111111    122344444444331 


Q ss_pred             Cccc-----------ccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCcc
Q 041519          368 DVAS-----------LNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRL  436 (521)
Q Consensus       368 ~l~~-----------l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L  436 (521)
                      .++.           +..+.-+-+.++.+-...+..+.+|++|+|++.. +...++..            +....++++|
T Consensus       328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDa------------a~~f~gl~~L  394 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDA------------AVAFNGLPSL  394 (873)
T ss_pred             ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecc------------hhhhccchhh
Confidence            0000           0000111133333444445566666777765542 22111111            1112348888


Q ss_pred             ceeecCCcccccccccCCCcccCCCccEEEEecCCCcccc-cCcCcccCCCCCCCCCCceEEEee
Q 041519          437 KKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRL-SLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       437 ~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l-P~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      ++|.+.+ .+++.|+.. ....+++||.|++.+.+ +.++ |..+..+         .|++|.+.
T Consensus       395 rkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m---------~Lk~Lv~n  447 (873)
T KOG4194|consen  395 RKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNA-IASIQPNAFEPM---------ELKELVMN  447 (873)
T ss_pred             hheeecC-ceeeecchh-hhccCcccceecCCCCc-ceeecccccccc---------hhhhhhhc
Confidence            8888888 678888762 22247888888888876 3444 3334332         37776654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.67  E-value=4.1e-17  Score=161.12  Aligned_cols=319  Identities=18%  Similarity=0.208  Sum_probs=188.7

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceee
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLL  230 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~  230 (521)
                      +..+.|++++|.+..+....|.++++|+.+.+.+|. ++.+|... +..-||+.|+|.+|.|.++. +++..+.-|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            466778888888887777766678888888888877 77777643 44556888888888777553 4566777788888


Q ss_pred             cccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hHHHHhhHhcccceEEEeccc
Q 041519          231 LRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       231 l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      ++.|. +..+|  ++-.-.++++|++++|.|+.+..+ |..+.+|..|.+...      +..+.+|+ +|+.|++..+.+
T Consensus       156 LSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~i  233 (873)
T KOG4194|consen  156 LSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRI  233 (873)
T ss_pred             hhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcc-hhhhhhccccce
Confidence            88764 77776  566667788888888877766543 566666666666543      44566677 788777755544


Q ss_pred             cch-hhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc-----c-CccccceEEEecc--------
Q 041519          302 NDF-NIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI-----V-LPEDVQYLEMFGV--------  366 (521)
Q Consensus       302 ~~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~-----~-~p~~L~~L~l~~~--------  366 (521)
                      .-. .-.+..++++++|+.-...+.......  .-.+.+++.+++..+....     . -...|+.|+++..        
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            332 122233333443333222211111111  1112234444444331110     0 1234555555431        


Q ss_pred             --cCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCc
Q 041519          367 --DDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDL  444 (521)
Q Consensus       367 --~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  444 (521)
                        ..-+.+..+--+++.++.++.+.+..|..|++|.|+.. .+..+.+..               ..++.+|++|++++ 
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~a---------------f~~lssL~~LdLr~-  374 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGA---------------FVGLSSLHKLDLRS-  374 (873)
T ss_pred             hhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhH---------------HHHhhhhhhhcCcC-
Confidence              11111222233445666666666667777777777654 344443222               13578899999987 


Q ss_pred             ccccccccCCCccc---CCCccEEEEecCCCcccccC-cCcccCCCCCCCCCCceEEEeehhh
Q 041519          445 REFKSICSDNGVLV---CNSLQEIEVYNCPKLKRLSL-SLPLLDNGQPSPPPALEVIEIKKEL  503 (521)
Q Consensus       445 ~~L~~~~~~~~~~~---~p~L~~L~i~~C~~L~~lP~-~~~~l~~~~~~~~~~L~~l~~~~~~  503 (521)
                      ..+ +|+.++++..   +|+|++|.+.|. +++.+|. .+..+.+        |+.|++....
T Consensus       375 N~l-s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~--------LE~LdL~~Na  427 (873)
T KOG4194|consen  375 NEL-SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEA--------LEHLDLGDNA  427 (873)
T ss_pred             CeE-EEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcc--------cceecCCCCc
Confidence            333 4555545443   589999999985 6999998 4555544        8888876333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=1.1e-16  Score=134.76  Aligned_cols=155  Identities=23%  Similarity=0.327  Sum_probs=134.1

Q ss_pred             ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519          148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR  227 (521)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~  227 (521)
                      ...++++++|.+++|++..+|+.+. ++.+|++|++.+|+ ++.+|.++ +.++.||.|+++-|.+..+|..||.++-|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence            3456789999999999999999986 89999999999998 99999987 899999999999999999999999999999


Q ss_pred             eeecccCCC-CCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEecc
Q 041519          228 SLLLRWCGI-LKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       228 ~L~l~~~~~-l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~  300 (521)
                      .||+.+|.. -..+| .+..+.-|+.|+++.|.++.+|..++++++|+.|.+.+.     |++++.++ +|++|++..+.
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt-~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT-RLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH-HHHHHhcccce
Confidence            999988652 23678 788899999999999999999999999999998877543     89999999 99999887776


Q ss_pred             ccchhh
Q 041519          301 LNDFNI  306 (521)
Q Consensus       301 ~~~~~~  306 (521)
                      +.-+..
T Consensus       185 l~vlpp  190 (264)
T KOG0617|consen  185 LTVLPP  190 (264)
T ss_pred             eeecCh
Confidence            654433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.55  E-value=2.9e-17  Score=155.52  Aligned_cols=137  Identities=31%  Similarity=0.394  Sum_probs=99.2

Q ss_pred             CcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC
Q 041519          138 GLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP  217 (521)
Q Consensus       138 ~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp  217 (521)
                      ++.+.+.|...-.++.+.+++...|-+..+|++++ .+.+|.-|++..|+ +..+|.  |+++..|+.|.++.|.++.+|
T Consensus       169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~i~~lp  244 (565)
T KOG0472|consen  169 GNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG-GLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQIEMLP  244 (565)
T ss_pred             ccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc-chhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccHHHhhH
Confidence            33444555444446677777777777777777776 67777777777777 777774  577777777777777777777


Q ss_pred             cccc-CCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519          218 NSVS-DLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       218 ~~i~-~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~  280 (521)
                      .+.+ +|.++.+||++.|+ +++.| .+..+++|.+||+++|.++.+|.++|+| .|+.|.+.+.
T Consensus       245 ae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  245 AEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             HHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence            7766 77778888888765 78888 7777888888888888888888877777 6777766554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.53  E-value=1.1e-14  Score=158.70  Aligned_cols=309  Identities=20%  Similarity=0.231  Sum_probs=187.1

Q ss_pred             cccccCCCcccccCCccEEEeecCC--CCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519          139 LRLLKFPGEQEWEENLERVSLMEND--FEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL  216 (521)
Q Consensus       139 ~~~~~~p~~~~~~~~l~~L~l~~~~--~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l  216 (521)
                      +....++..... ++++.|-+..|.  +..++..+|..++.||+|++++|.....+|.++ +.+-+||||+++++.+..+
T Consensus       533 ~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~L  610 (889)
T KOG4658|consen  533 NKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHL  610 (889)
T ss_pred             cchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcccc
Confidence            333444444333 379999999996  788888888899999999999999899999997 9999999999999999999


Q ss_pred             CccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-------hHHHHhhH
Q 041519          217 PNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLS  288 (521)
Q Consensus       217 p~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~  288 (521)
                      |.++++|..|.+|++..+..+..+| ....|.+|++|.+.......-...++.+.+|++|....+       ...+..+.
T Consensus       611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~  690 (889)
T KOG4658|consen  611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT  690 (889)
T ss_pred             chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence            9999999999999999988777888 566699999999988753322223455556666655433       13444455


Q ss_pred             hcccceEEEecc-ccchhhhhhccCCCCCCcceeeeecCCCCC---C---ccccc-eeeeeeeeeecC-----cccccCc
Q 041519          289 DRLDTFVGYFST-LNDFNIYVKSTDGRGSKNYCLLLSASGKRG---F---LEVDK-SVRLFACKICET-----EETIVLP  355 (521)
Q Consensus       289 ~~L~~L~~~~~~-~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~---~---~~~~~-~~~L~~L~i~~~-----~~~~~~p  355 (521)
                       +|.++...... .............+.+|+.+.+........   .   ..... ..++..+.+...     .....+|
T Consensus       691 -~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~  769 (889)
T KOG4658|consen  691 -RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA  769 (889)
T ss_pred             -HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc
Confidence             55544322221 011222233344566666666642211100   0   00010 112333333222     1223578


Q ss_pred             cccceEEEecccCcccccccccCCCcccccccchhhccCCCcEE-EEecccchhhhhccCcchhhhhhhcccccccccCC
Q 041519          356 EDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVL-AVGYCFLIEEIVAVEDEETEKELATNTIINTVTLP  434 (521)
Q Consensus       356 ~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L-~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~  434 (521)
                      ++|+.|.+..|..+..+.........+..   .. ..+.++..+ .+.+...+..+...                ...|+
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~---~i-~~f~~~~~l~~~~~l~~l~~i~~~----------------~l~~~  829 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKLKALLELKE---LI-LPFNKLEGLRMLCSLGGLPQLYWL----------------PLSFL  829 (889)
T ss_pred             CcccEEEEecccccccCCCHHHHhhhccc---EE-ecccccccceeeecCCCCceeEec----------------ccCcc
Confidence            99999999999875543221111111110   00 011222222 12222222222111                02345


Q ss_pred             ccceeecCCcccccccccCCCcccCCCccEEEEecC-CCcccccCc
Q 041519          435 RLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNC-PKLKRLSLS  479 (521)
Q Consensus       435 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C-~~L~~lP~~  479 (521)
                      +|+.+.+..||++..         +|.+.++.+.+| +++..+|..
T Consensus       830 ~l~~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  830 KLEELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             chhheehhcCccccc---------CccccccceeccccceeecCCc
Confidence            566666666555543         477888999997 999999986

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=1.3e-15  Score=128.40  Aligned_cols=150  Identities=28%  Similarity=0.367  Sum_probs=135.0

Q ss_pred             EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      +.+.+++..+|.....+.+++.|.+.+|+++++|..+. .+++||.|++.-|. +..+|.+| +.++.|.+||+++|++.
T Consensus        39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnr-l~~lprgf-gs~p~levldltynnl~  115 (264)
T KOG0617|consen   39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNR-LNILPRGF-GSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhh-hhcCcccc-CCCchhhhhhccccccc
Confidence            34556677788888888999999999999999999987 89999999999998 88899886 99999999999999877


Q ss_pred             --ccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHh
Q 041519          215 --VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAAR  286 (521)
Q Consensus       215 --~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~  286 (521)
                        .+|..|..+..|+.|.+++|. ++.+| .++++.+||.|.++.|.+-++|..++.++.|++|++.+.     |.++++
T Consensus       116 e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence              789999999999999999976 89999 999999999999999999999999999999999988654     677776


Q ss_pred             hH
Q 041519          287 LS  288 (521)
Q Consensus       287 L~  288 (521)
                      +.
T Consensus       195 l~  196 (264)
T KOG0617|consen  195 LD  196 (264)
T ss_pred             hh
Confidence            65

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.46  E-value=5.7e-16  Score=146.79  Aligned_cols=256  Identities=25%  Similarity=0.310  Sum_probs=163.0

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      ..+..+.+++|.++.+.++.. .+..+.+|.+.+|+ ...+|+.+ +.+..++.++.++|++..+|..++.+.+|+.|+.
T Consensus        45 v~l~~lils~N~l~~l~~dl~-nL~~l~vl~~~~n~-l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLK-NLACLTVLNVHDNK-LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhhccHhhh-cccceeEEEeccch-hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            356667777787777777665 77778888888887 77777776 7778888888888888888888888888888888


Q ss_pred             ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEeccccchh
Q 041519          232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTLNDFN  305 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~~~~~  305 (521)
                      +.|. +..+| +++.+..|..++..+|.+..+|.+++.+.+|..|.+...     +...-+++ .|++|++..+.++.+.
T Consensus       122 s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~-~L~~ld~~~N~L~tlP  199 (565)
T KOG0472|consen  122 SSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMK-RLKHLDCNSNLLETLP  199 (565)
T ss_pred             cccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHH-HHHhcccchhhhhcCC
Confidence            8765 77777 788888888888888888888888877777777766533     44444477 8888876555444444


Q ss_pred             hhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCc--cccceEEEecccCcccccccccCCCccc
Q 041519          306 IYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLP--EDVQYLEMFGVDDVASLNDVLPREQGLN  383 (521)
Q Consensus       306 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p--~~L~~L~l~~~~~l~~l~~~~~~~~~l~  383 (521)
                      ..+..   +.+|..+.+.                  .-.|..-+   .||  ..|++|++.              -+.++
T Consensus       200 ~~lg~---l~~L~~LyL~------------------~Nki~~lP---ef~gcs~L~Elh~g--------------~N~i~  241 (565)
T KOG0472|consen  200 PELGG---LESLELLYLR------------------RNKIRFLP---EFPGCSLLKELHVG--------------ENQIE  241 (565)
T ss_pred             hhhcc---hhhhHHHHhh------------------hcccccCC---CCCccHHHHHHHhc--------------ccHHH
Confidence            43332   2222222111                  00000000   111  123333222              13445


Q ss_pred             ccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCcc
Q 041519          384 LFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQ  463 (521)
Q Consensus       384 ~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~  463 (521)
                      .+|...+.+|++|.+|++++. ++++.|...                ..+.+|++|++++ ..+..++.  ....+ .|+
T Consensus       242 ~lpae~~~~L~~l~vLDLRdN-klke~Pde~----------------clLrsL~rLDlSN-N~is~Lp~--sLgnl-hL~  300 (565)
T KOG0472|consen  242 MLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI----------------CLLRSLERLDLSN-NDISSLPY--SLGNL-HLK  300 (565)
T ss_pred             hhHHHHhcccccceeeecccc-ccccCchHH----------------HHhhhhhhhcccC-CccccCCc--ccccc-eee
Confidence            566666677788888888765 566665443                4567777888777 45666665  22233 566


Q ss_pred             EEEEecCC
Q 041519          464 EIEVYNCP  471 (521)
Q Consensus       464 ~L~i~~C~  471 (521)
                      .|.+.|.|
T Consensus       301 ~L~leGNP  308 (565)
T KOG0472|consen  301 FLALEGNP  308 (565)
T ss_pred             ehhhcCCc
Confidence            77777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=3.2e-13  Score=145.06  Aligned_cols=112  Identities=28%  Similarity=0.438  Sum_probs=68.6

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      +...|.+.++.++.+|..+.   ++++.|++++|+ +..+|..++   .+|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP---EQITTLILDNNE-LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc---cCCcEEEecCCC-CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            45566666666666666543   456677777765 666666542   466777777777666665443  356777777


Q ss_pred             cCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccc
Q 041519          233 WCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLF  278 (521)
Q Consensus       233 ~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~  278 (521)
                      +|. +..+| .+.  .+|+.|++++|+++.+|..+.  .+|++|++.
T Consensus       250 ~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        250 INR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECC
Confidence            764 66666 443  467777777666666665442  345554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=3.6e-12  Score=136.26  Aligned_cols=263  Identities=17%  Similarity=0.184  Sum_probs=150.4

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ..+..++..+..+|....  .+++.|++..|.++.+|..    .++|++|++++|+ +..+|.    ..++|+.|++++|
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~-LtsLP~----lp~sL~~L~Ls~N  272 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN  272 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCc-cCcccC----cccccceeeccCC
Confidence            344555666777776432  4788888888888887753    4678888888886 777764    2467788888888


Q ss_pred             CCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-hHHHHhhHhc
Q 041519          212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-AEEAARLSDR  290 (521)
Q Consensus       212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-~~~i~~L~~~  290 (521)
                      .+..+|...   .+|+.|++++|. +..+|..  +.+|+.|++++|.++.+|....   +|+.|.+..+ ...+..+..+
T Consensus       273 ~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~--p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~Ls~N~L~~LP~lp~~  343 (788)
T PRK15387        273 PLTHLPALP---SGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPTLPSG  343 (788)
T ss_pred             chhhhhhch---hhcCEEECcCCc-ccccccc--ccccceeECCCCccccCCCCcc---cccccccccCccccccccccc
Confidence            877777532   457778888874 7777731  3678888888888777765332   3444433322 0011111114


Q ss_pred             ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc--ccCccccceEEEecccC
Q 041519          291 LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET--IVLPEDVQYLEMFGVDD  368 (521)
Q Consensus       291 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~--~~~p~~L~~L~l~~~~~  368 (521)
                      |+.|+++.+.+..+...                             ..+|+.|.++.+...  ...|.+|+.|+++++  
T Consensus       344 Lq~LdLS~N~Ls~LP~l-----------------------------p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N--  392 (788)
T PRK15387        344 LQELSVSDNQLASLPTL-----------------------------PSELYKLWAYNNRLTSLPALPSGLKELIVSGN--  392 (788)
T ss_pred             cceEecCCCccCCCCCC-----------------------------CcccceehhhccccccCcccccccceEEecCC--
Confidence            55555544333221110                             012223333322111  012345677766553  


Q ss_pred             cccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccc
Q 041519          369 VASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFK  448 (521)
Q Consensus       369 l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~  448 (521)
                                  .+..+|.    ..++|+.|+++++. +..+|.                   .+.+|+.|++.+ .+++
T Consensus       393 ------------~Lt~LP~----l~s~L~~LdLS~N~-LssIP~-------------------l~~~L~~L~Ls~-NqLt  435 (788)
T PRK15387        393 ------------RLTSLPV----LPSELKELMVSGNR-LTSLPM-------------------LPSGLLSLSVYR-NQLT  435 (788)
T ss_pred             ------------cccCCCC----cccCCCEEEccCCc-CCCCCc-------------------chhhhhhhhhcc-Cccc
Confidence                        1222221    12467888887763 444431                   235677888877 5577


Q ss_pred             ccccCCCcccCCCccEEEEecCCCcccccCcCcccC
Q 041519          449 SICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLD  484 (521)
Q Consensus       449 ~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~  484 (521)
                      .+|.  ....+++|+.|++++++-=...|..+..+.
T Consensus       436 ~LP~--sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        436 RLPE--SLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             ccCh--HHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            7766  455678888888888874333444444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.38  E-value=2.6e-12  Score=138.07  Aligned_cols=120  Identities=24%  Similarity=0.371  Sum_probs=99.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+.++.|++.+|.++.+|..++   ++|++|++++|. +..+|..+   ..+|+.|++++|.
T Consensus       182 ~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~  252 (754)
T PRK15370        182 ELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINR  252 (754)
T ss_pred             EEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc-cccCChhh---hccccEEECcCCc
Confidence            4445566777777643  4689999999999999998765   589999999998 88899865   3579999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccc
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM  266 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i  266 (521)
                      +..+|..+.  .+|++|++++|. +..+| .+.  .+|++|++++|+++.+|..+
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l  302 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHL  302 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccc
Confidence            999998765  489999999875 88899 664  58999999999999888654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.24  E-value=2.2e-13  Score=141.86  Aligned_cols=95  Identities=23%  Similarity=0.329  Sum_probs=55.3

Q ss_pred             cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519          137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL  216 (521)
Q Consensus       137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l  216 (521)
                      .++.+...|.......+++.|.++.|.+..+|.... ++++|.+|.+.+|. ...+|.++ ..+++|++|++++|.+..+
T Consensus        53 snn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~-l~~lP~~~-~~lknl~~LdlS~N~f~~~  129 (1081)
T KOG0618|consen   53 SNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR-LQSLPASI-SELKNLQYLDLSFNHFGPI  129 (1081)
T ss_pred             cccccccCCchhhhHHHHhhcccchhhHhhCchhhh-hhhcchhheeccch-hhcCchhH-HhhhcccccccchhccCCC
Confidence            344445555555555566666666666666664443 56666666666665 56666654 5666666666666666666


Q ss_pred             CccccCCcccceeecccC
Q 041519          217 PNSVSDLTNLRSLLLRWC  234 (521)
Q Consensus       217 p~~i~~L~~L~~L~l~~~  234 (521)
                      |..+..+..+..++.++|
T Consensus       130 Pl~i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen  130 PLVIEVLTAEEELAASNN  147 (1081)
T ss_pred             chhHHhhhHHHHHhhhcc
Confidence            655555555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=2.7e-12  Score=133.98  Aligned_cols=100  Identities=27%  Similarity=0.419  Sum_probs=56.2

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeeccc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW  233 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  233 (521)
                      +..|++++|.+..+|..+. .+.+|+.|.++.|. +..+|.+. +++.+|++|.|.+|.+..+|.++..+++|++|++++
T Consensus        47 L~~l~lsnn~~~~fp~~it-~l~~L~~ln~s~n~-i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQIT-LLSHLRQLNLSRNY-IRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eEEeeccccccccCCchhh-hHHHHhhcccchhh-HhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence            5555555555555555544 45555555555554 55555443 555555555555555555555555555555565555


Q ss_pred             CCCCCccC-CccCCCCCCEEEeeCC
Q 041519          234 CGILKRVP-SLAKLLALQYLDLEGT  257 (521)
Q Consensus       234 ~~~l~~lp-~~~~l~~L~~L~l~~~  257 (521)
                      |. +..+| -+..+..+..+..++|
T Consensus       124 N~-f~~~Pl~i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen  124 NH-FGPIPLVIEVLTAEEELAASNN  147 (1081)
T ss_pred             hc-cCCCchhHHhhhHHHHHhhhcc
Confidence            43 55555 4555555555555555

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.18  E-value=9.9e-12  Score=121.05  Aligned_cols=99  Identities=35%  Similarity=0.677  Sum_probs=77.3

Q ss_pred             ChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHHHH
Q 041519            7 PALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFL   86 (521)
Q Consensus         7 p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cfl   86 (521)
                      ++.+++++++|+++|+|+|||++++|++|+.+.+..+|+.+++++........+....+..++.+||+.|| .++|+||+
T Consensus       178 ~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~f~  256 (287)
T PF00931_consen  178 PEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP-DELRRCFL  256 (287)
T ss_dssp             -TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH-TCCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC-ccHHHHHh
Confidence            45667899999999999999999999999766578899999998866654332346899999999999999 79999999


Q ss_pred             HHHH--------HhHHHHHHHHcccccc
Q 041519           87 YCAL--------GHTILNRLVNCCLLES  106 (521)
Q Consensus        87 ~~s~--------g~~~~~~L~~~~l~~~  106 (521)
                      |||+        .+..+.-++..++++.
T Consensus       257 ~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  257 YLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             HGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             hCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            9998        3444555555555543

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.15  E-value=2.8e-10  Score=121.96  Aligned_cols=226  Identities=20%  Similarity=0.185  Sum_probs=143.8

Q ss_pred             EEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519          134 MVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI  213 (521)
Q Consensus       134 ~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l  213 (521)
                      +...++.+..+|.   .++++++|++.+|.++.+|..    .++|+.|++++|. +..+|..    +..|+.|++++|.+
T Consensus       227 L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~-L~~Lp~l----p~~L~~L~Ls~N~L  294 (788)
T PRK15387        227 LVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNP-LTHLPAL----PSGLCKLWIFGNQL  294 (788)
T ss_pred             EEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc----ccccceeeccCCc-hhhhhhc----hhhcCEEECcCCcc
Confidence            3444566777775   357899999999999999853    3688999999987 7777752    35688899999999


Q ss_pred             CccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccch-HHHHh-hHhcc
Q 041519          214 EVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAA-EEAAR-LSDRL  291 (521)
Q Consensus       214 ~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~-~~i~~-L~~~L  291 (521)
                      +.+|..   +.+|++|++++|. +..+|.+  ..+|+.|++++|.+..+|..   ..+|++|++.... ..+.. .. +|
T Consensus       295 t~LP~~---p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp~-~L  364 (788)
T PRK15387        295 TSLPVL---PPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTLPS-EL  364 (788)
T ss_pred             cccccc---ccccceeECCCCc-cccCCCC--cccccccccccCcccccccc---ccccceEecCCCccCCCCCCCc-cc
Confidence            888863   4679999999985 7778732  23577788888888887752   2467777776540 00000 12 34


Q ss_pred             cceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccCc
Q 041519          292 DTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDDV  369 (521)
Q Consensus       292 ~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~l  369 (521)
                      +.|.+..+.+..+..                             ...+|+.|.++++....  ..|..|+.|+++++.  
T Consensus       365 ~~L~Ls~N~L~~LP~-----------------------------l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~--  413 (788)
T PRK15387        365 YKLWAYNNRLTSLPA-----------------------------LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR--  413 (788)
T ss_pred             ceehhhccccccCcc-----------------------------cccccceEEecCCcccCCCCcccCCCEEEccCCc--
Confidence            444333222211110                             01145556665553321  124678888887742  


Q ss_pred             ccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc
Q 041519          370 ASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR  445 (521)
Q Consensus       370 ~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  445 (521)
                                  +..+|.    ...+|+.|+++++ .+..+|...                ..+++|+.|++.+.+
T Consensus       414 ------------LssIP~----l~~~L~~L~Ls~N-qLt~LP~sl----------------~~L~~L~~LdLs~N~  456 (788)
T PRK15387        414 ------------LTSLPM----LPSGLLSLSVYRN-QLTRLPESL----------------IHLSSETTVNLEGNP  456 (788)
T ss_pred             ------------CCCCCc----chhhhhhhhhccC-cccccChHH----------------hhccCCCeEECCCCC
Confidence                        222332    1246788888876 456665433                468999999999854

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.13  E-value=1.1e-11  Score=117.77  Aligned_cols=143  Identities=23%  Similarity=0.268  Sum_probs=119.8

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC-
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-  210 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-  210 (521)
                      .....++..+..+|..  ..+....+.+..|.|+.+|+..|..+++||.|+++.|. ++.|.+..|.+++.|-.|-+.+ 
T Consensus        49 ~~VdCr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             ceEEccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcC
Confidence            3455677778888764  34578899999999999999999999999999999998 8888888789999888777666 


Q ss_pred             CCCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccc
Q 041519          211 TSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLF  278 (521)
Q Consensus       211 ~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~  278 (521)
                      |+|+.+|+ .|+.|..|+-|.+.-|. +.-++  .+..|.+|..|.+..|.+..++. .+..+.+++++.+-
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence            88999985 56799999999998876 66665  68999999999999999998888 57788888887664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.94  E-value=7.9e-11  Score=112.18  Aligned_cols=120  Identities=28%  Similarity=0.429  Sum_probs=99.4

Q ss_pred             EEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecccCC
Q 041519          157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRWCG  235 (521)
Q Consensus       157 L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~  235 (521)
                      .+-++..+..+|.++.   .....+.++.|+ ++.+|+..|+.+++||.|||++|.|+.+ |.+|..|.+|-.|-+.++.
T Consensus        51 VdCr~~GL~eVP~~LP---~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP---PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcccCcccCC---CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            3445566788888776   467788999998 9999999999999999999999999966 8899999999888888866


Q ss_pred             CCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc
Q 041519          236 ILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA  280 (521)
Q Consensus       236 ~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~  280 (521)
                      +++++|  .++.|..|+.|.+.-|.+.-++. .+..|.+|+.|.+++.
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn  174 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN  174 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence            799999  59999999999999887775544 3666777777776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=2.4e-09  Score=94.33  Aligned_cols=105  Identities=26%  Similarity=0.394  Sum_probs=43.3

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcccc-CCcccceeec
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVS-DLTNLRSLLL  231 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l  231 (521)
                      +++.|++++|.++.+. .+...+.+|++|++++|. +..+..  +..+++|+.|++++|.++.+...+. .+++|+.|++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            6799999999998874 344467899999999998 888875  5789999999999999998876553 6899999999


Q ss_pred             ccCCCCCccC---CccCCCCCCEEEeeCCcCccc
Q 041519          232 RWCGILKRVP---SLAKLLALQYLDLEGTWIEEV  262 (521)
Q Consensus       232 ~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~l  262 (521)
                      ++|. +..+.   .+..+++|+.|++.+|.+...
T Consensus        96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             cCCc-CCChHHhHHHHcCCCcceeeccCCcccch
Confidence            9875 77665   467889999999999876644

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.75  E-value=7.5e-10  Score=110.26  Aligned_cols=135  Identities=27%  Similarity=0.364  Sum_probs=118.0

Q ss_pred             ccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc
Q 041519          140 RLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS  219 (521)
Q Consensus       140 ~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~  219 (521)
                      .++.+|.....+..++.++++.|.++.+|..++ .| -|++|.+++|+ ++.+|+.+ +....|..||.+.|.+..+|..
T Consensus       109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~l-pLkvli~sNNk-l~~lp~~i-g~~~tl~~ld~s~nei~slpsq  184 (722)
T KOG0532|consen  109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DL-PLKVLIVSNNK-LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQ  184 (722)
T ss_pred             cceecchhhhhhhHHHHhhhccchhhcCChhhh-cC-cceeEEEecCc-cccCCccc-ccchhHHHhhhhhhhhhhchHH
Confidence            456677778888899999999999999998886 55 48999999998 89999987 7889999999999999999999


Q ss_pred             ccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519          220 VSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       220 i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~  280 (521)
                      ++.+..|+.|+++.|. +..+| .++ --.|..||++.|++..+|-.|.+|+.|++|.+...
T Consensus       185 l~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             hhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence            9999999999999976 88888 777 55789999999999999999999999999988765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.70  E-value=2e-08  Score=88.51  Aligned_cols=137  Identities=23%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHhccCCcEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchh
Q 041519          116 HDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC  195 (521)
Q Consensus       116 hdli~dl~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~  195 (521)
                      |+++++.+..........+...+..+..+......+.+++.|++++|.+..+.. + +.++.|++|++++|. +..+.+.
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~-I~~i~~~   82 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNR-ISSISEG   82 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHH
T ss_pred             ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCC-CCccccc
Confidence            344444444333222333445566666665444456789999999999999864 3 478999999999999 8888766


Q ss_pred             HhhCCCCCcEEEccCCCCCccC--ccccCCcccceeecccCCCCCccCC-----ccCCCCCCEEEeeC
Q 041519          196 FFVHMHGLKVLNLCHTSIEVLP--NSVSDLTNLRSLLLRWCGILKRVPS-----LAKLLALQYLDLEG  256 (521)
Q Consensus       196 ~~~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~  256 (521)
                      +...+++|+.|++++|.+..+-  ..+..+++|++|++.+|+ +...+.     +..+++|+.||-..
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence            5457999999999999987543  456789999999999997 555442     56677777776544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.65  E-value=7.5e-10  Score=110.24  Aligned_cols=121  Identities=27%  Similarity=0.474  Sum_probs=77.1

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      ......+++.|++..+|..+. .|-.|+.+.+..|. +..+|..+ +++..|.+|+|+.|+++.+|..++.|+ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~elp~~~~-~f~~Le~liLy~n~-~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEAC-AFVSLESLILYHNC-IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccccCchHHH-HHHHHHHHHHHhcc-ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence            344556666777777766654 55666666666665 66666665 666666666666666666666666554 666666


Q ss_pred             ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCccccc
Q 041519          232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL  277 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~  277 (521)
                      ++|+ ++.+| .++.+..|..||.+.|.+..+|..++.+.+|+.|.+
T Consensus       151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence            6653 66666 666666666666666666666666666666666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.62  E-value=4.2e-09  Score=97.10  Aligned_cols=124  Identities=23%  Similarity=0.316  Sum_probs=100.9

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      ..++.+++++|.++.+..+.. -.+++|+|++++|. +..+..  +..+.+|..|||++|.+.++-..-.+|-|.++|.+
T Consensus       284 q~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVK-LAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhhhh-hccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            467888999999988877764 56899999999998 766665  47889999999999988877665568888999999


Q ss_pred             ccCCCCCccCCccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc
Q 041519          232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA  280 (521)
Q Consensus       232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~  280 (521)
                      ++|. ++.+..+++|.+|..||+++|++.++.  .+||+|..|.++.+.+.
T Consensus       360 a~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  360 AQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            9975 888888999999999999999888664  35788888877776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.57  E-value=1.1e-08  Score=101.04  Aligned_cols=106  Identities=26%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             CCccEEEeecCCCC-----CCCCCcCCCCCCccEEEcccCcCCCCCc------hhHhhCCCCCcEEEccCCCCC-ccCcc
Q 041519          152 ENLERVSLMENDFE-----EIPSNMSPHCEILSTLLLQHNKYLQRIP------ECFFVHMHGLKVLNLCHTSIE-VLPNS  219 (521)
Q Consensus       152 ~~l~~L~l~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~L~~~~l~-~lp~~  219 (521)
                      ..++.+.+.++.+.     .++..+. ..++++.++++++. +...+      ...+..+++|+.|++++|.+. ..+..
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            34566666666552     1222222 44456666665554 22111      112345556666666665554 22333


Q ss_pred             ccCCcc---cceeecccCCCCC-----ccC-CccCC-CCCCEEEeeCCcCc
Q 041519          220 VSDLTN---LRSLLLRWCGILK-----RVP-SLAKL-LALQYLDLEGTWIE  260 (521)
Q Consensus       220 i~~L~~---L~~L~l~~~~~l~-----~lp-~~~~l-~~L~~L~l~~~~l~  260 (521)
                      +..+.+   |++|++++|. +.     .+. .+..+ .+|+.|++++|.++
T Consensus       101 ~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         101 LESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             HHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            333333   6666666554 32     111 23344 55566666665444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.49  E-value=9.2e-08  Score=69.12  Aligned_cols=57  Identities=35%  Similarity=0.499  Sum_probs=27.8

Q ss_pred             CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccC
Q 041519          177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWC  234 (521)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~  234 (521)
                      +|++|++++|+ +..+|...|..+++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34455555544 44444444455555555555555554432 33445555555555544

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.44  E-value=4.6e-08  Score=90.32  Aligned_cols=120  Identities=26%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEe
Q 041519          176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDL  254 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l  254 (521)
                      ..|+.+++++|. ++.+..++ +-.+.+|+|++++|.+..+-. +..|++|+.||+++|. +..+- .-.+|-+.++|.+
T Consensus       284 q~LtelDLS~N~-I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccc-hhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence            455666666665 66665554 556666666666666554433 5566666666666654 55554 3345556666666


Q ss_pred             eCCcCcccCccccCCCCCcccccccc-------hHHHHhhHhcccceEEEeccc
Q 041519          255 EGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       255 ~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      .+|.+..+ .++++|-+|..|++...       ..+||+|+ .|+++.+..+.+
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl  411 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPL  411 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCc
Confidence            66655554 24555555565555433       34455555 555555444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.39  E-value=2.2e-07  Score=67.14  Aligned_cols=59  Identities=34%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      ++++|++++|.+..+|...+..+++|++|++++|. +..+++..|.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666666666666566666666666665 566665555666666666666654

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.37  E-value=2.2e-07  Score=91.80  Aligned_cols=126  Identities=21%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCC---CCccEEEcccCcCCCC-----CchhHhhCC-CCCcEEEccCCCCC-----ccC
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHC---EILSTLLLQHNKYLQR-----IPECFFVHM-HGLKVLNLCHTSIE-----VLP  217 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l---~~L~~L~l~~~~~~~~-----~~~~~~~~l-~~L~~L~L~~~~l~-----~lp  217 (521)
                      ++++.|++.++.+.......+..+   ++|+.|++++|. +..     +... +..+ ++|+.|++++|.++     .++
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            466666666666543221111122   336777776665 331     1112 2344 66677777766655     233


Q ss_pred             ccccCCcccceeecccCCCCC-----ccC-CccCCCCCCEEEeeCCcCc-----ccCccccCCCCCcccccccc
Q 041519          218 NSVSDLTNLRSLLLRWCGILK-----RVP-SLAKLLALQYLDLEGTWIE-----EVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       218 ~~i~~L~~L~~L~l~~~~~l~-----~lp-~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~~~~~  280 (521)
                      ..+..+.+|++|++++|. +.     .++ .+..+.+|++|++++|.+.     .++..+..+++|++|++..+
T Consensus       159 ~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         159 KALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            344455567777776654 33     222 3444556777777666553     22333444555666655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.5e-07  Score=94.38  Aligned_cols=143  Identities=31%  Similarity=0.390  Sum_probs=84.1

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCC-CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCE-ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      +.++.+++.++.+..++.... ..+ +|+.|++++|. +..+|..+ +.++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~-i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNK-IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccccc-cchhhcccccccccc-hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            456666666666666666543 332 66666666666 66665333 566666666666666666666555666666666


Q ss_pred             cccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEec
Q 041519          231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFS  299 (521)
Q Consensus       231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~  299 (521)
                      +++|. +..+| .++.+..|++|.++++.+...+..+.++.++..+.+...     +..++.+. .+++|++..+
T Consensus       193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~-~l~~L~~s~n  265 (394)
T COG4886         193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS-NLETLDLSNN  265 (394)
T ss_pred             ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc-ccceeccccc
Confidence            66654 66666 445555666666666655555555555555555543322     24455555 5555554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.2e-07  Score=94.87  Aligned_cols=165  Identities=25%  Similarity=0.309  Sum_probs=136.3

Q ss_pred             cEEEecCcccccCCCcccccC-CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEE-NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH  210 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~-~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~  210 (521)
                      ......+..+..++....... +++.|++..|.+..+|.... .+++|+.|++.+|+ +..+|... +..+.|+.|++++
T Consensus       119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ls~  195 (394)
T COG4886         119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLDLSG  195 (394)
T ss_pred             eEEecCCcccccCccccccchhhcccccccccchhhhhhhhh-ccccccccccCCch-hhhhhhhh-hhhhhhhheeccC
Confidence            344556667778888777774 99999999999999975555 89999999999999 88998864 5899999999999


Q ss_pred             CCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHH
Q 041519          211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAA  285 (521)
Q Consensus       211 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~  285 (521)
                      |.+..+|..+..+.+|++|.+++|. ....+ .+.++.++..+.+.++.+..++..++.+.+++.|++...    ...++
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~  274 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLG  274 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccccc
Confidence            9999999987888889999999975 45555 899999999999888888888888999999999988765    22367


Q ss_pred             hhHhcccceEEEeccc
Q 041519          286 RLSDRLDTFVGYFSTL  301 (521)
Q Consensus       286 ~L~~~L~~L~~~~~~~  301 (521)
                      .+. +++.|++.....
T Consensus       275 ~~~-~l~~L~~s~n~~  289 (394)
T COG4886         275 SLT-NLRELDLSGNSL  289 (394)
T ss_pred             ccC-ccCEEeccCccc
Confidence            777 888887654433

>PLN03150 hypothetical protein; Provisional

Probab=98.25  E-value=1.8e-06  Score=92.75  Aligned_cols=89  Identities=28%  Similarity=0.444  Sum_probs=64.9

Q ss_pred             ccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEee
Q 041519          178 LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLE  255 (521)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~  255 (521)
                      ++.|++++|.....+|..+ +.+++|+.|+|++|.+. .+|..++.+.+|++|++++|.....+| .++++.+|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6677777777555666664 77788888888888776 677777788888888888776455677 67788888888888


Q ss_pred             CCcCc-ccCcccc
Q 041519          256 GTWIE-EVPEGME  267 (521)
Q Consensus       256 ~~~l~-~lp~~i~  267 (521)
                      +|.+. .+|..++
T Consensus       499 ~N~l~g~iP~~l~  511 (623)
T PLN03150        499 GNSLSGRVPAALG  511 (623)
T ss_pred             CCcccccCChHHh
Confidence            87665 6666554

>PLN03150 hypothetical protein; Provisional

Probab=98.22  E-value=3e-06  Score=91.00  Aligned_cols=108  Identities=26%  Similarity=0.388  Sum_probs=89.6

Q ss_pred             ccEEEeecCCCC-CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeec
Q 041519          154 LERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       154 l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l  231 (521)
                      ++.|++.++.+. .+|..+. .+++|+.|++++|.....+|..+ +.+++|++|+|++|.+. .+|..++++.+|++|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            678888998887 4565554 89999999999998556788775 99999999999999988 88999999999999999


Q ss_pred             ccCCCCCccC-CccCC-CCCCEEEeeCC-cCcccC
Q 041519          232 RWCGILKRVP-SLAKL-LALQYLDLEGT-WIEEVP  263 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l-~~L~~L~l~~~-~l~~lp  263 (521)
                      ++|.....+| .++.+ .++..+++.+| .+-..|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9998667889 77653 57788999988 343433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=4.3e-07  Score=88.24  Aligned_cols=85  Identities=15%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             CCCCccEEEcccCcCCCCCch-hHhhCCCCCcEEEccCCCCC---ccCccccCCcccceeecccCCCCCccC---CccCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPE-CFFVHMHGLKVLNLCHTSIE---VLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKL  246 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l  246 (521)
                      ++++||...++++. +...+. +....+++++.|||+.|-+.   .+-.-...|++|+.|+++.|. +...-   .-..+
T Consensus       119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhh
Confidence            34444444444443 333331 12244555555555554332   112222345555555555543 22211   12345


Q ss_pred             CCCCEEEeeCCcCc
Q 041519          247 LALQYLDLEGTWIE  260 (521)
Q Consensus       247 ~~L~~L~l~~~~l~  260 (521)
                      .+|+.|.+++|++.
T Consensus       197 ~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLS  210 (505)
T ss_pred             hhhheEEeccCCCC
Confidence            56666666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=3.6e-05  Score=76.42  Aligned_cols=63  Identities=24%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             hCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCC-cCcccCcc
Q 041519          198 VHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEEVPEG  265 (521)
Q Consensus       198 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~  265 (521)
                      ..+.+++.|++++|.++.+|.   -..+|+.|.+++|..+..+| .+  ..+|++|++++| .+..+|.+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence            446778888888888777772   22358888888888777777 44  357888888888 77777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=9.3e-06  Score=53.88  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=15.1

Q ss_pred             CCcEEEccCCCCCccCccccCCcccceeecccC
Q 041519          202 GLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWC  234 (521)
Q Consensus       202 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~  234 (521)
                      +|++|++++|.++.+|..+++|++|++|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            344455555544444444444444555554444

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.91  E-value=1.1e-06  Score=85.03  Aligned_cols=105  Identities=21%  Similarity=0.206  Sum_probs=63.7

Q ss_pred             CccEEEeecCCCCCCC--CCcCCCCCCccEEEcccCcCCCCCc-hhHhhCCCCCcEEEccCCC-CCcc-Cc-cccCCccc
Q 041519          153 NLERVSLMENDFEEIP--SNMSPHCEILSTLLLQHNKYLQRIP-ECFFVHMHGLKVLNLCHTS-IEVL-PN-SVSDLTNL  226 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~--~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~-l~~l-p~-~i~~L~~L  226 (521)
                      .++.|++.++.-....  ..+...|++++.|.+.+|..+++.. .++-..+..|++|++..|. ++.. -+ -...+.+|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            4566777665432111  1233478888888888887554432 2334578889999888853 4421 12 22367788


Q ss_pred             ceeecccCCCCCccC---CccCCCCCCEEEeeCC
Q 041519          227 RSLLLRWCGILKRVP---SLAKLLALQYLDLEGT  257 (521)
Q Consensus       227 ~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~  257 (521)
                      .||++++|+.+..-.   -.....+++.+..+||
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            899998888666521   2344455666666666

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=4.7e-05  Score=75.63  Aligned_cols=110  Identities=29%  Similarity=0.499  Sum_probs=67.6

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC-CCCccCccccCCcccceee
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT-SIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~  230 (521)
                      .++++|+++++.+..+|. +.   .+|++|.+.+|..+..+|..+   ..+|++|++++| .+..+|.+      |+.|+
T Consensus        52 ~~l~~L~Is~c~L~sLP~-LP---~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV-LP---NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcccCC-CC---CCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence            567888888888888872 22   468888888877677777654   357888888887 56677764      44444


Q ss_pred             ccc--CCCCCccC-CccCC------------------CCCCEEEeeCCcCcccCccccCCCCCcccc
Q 041519          231 LRW--CGILKRVP-SLAKL------------------LALQYLDLEGTWIEEVPEGMEMLENLSHLS  276 (521)
Q Consensus       231 l~~--~~~l~~lp-~~~~l------------------~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  276 (521)
                      +.+  +..+..+| ++..|                  .+|++|++++|....+|.++.  .+|++|.
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~  183 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSIT  183 (426)
T ss_pred             eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence            443  22355666 44333                  256677777764444444332  3444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=3.6e-06  Score=81.97  Aligned_cols=82  Identities=22%  Similarity=0.214  Sum_probs=37.0

Q ss_pred             CCccEEEeecCCCCCCCC-CcCCCCCCccEEEcccCcCCCCCc--hhHhhCCCCCcEEEccCCCCCccCccc--cCCccc
Q 041519          152 ENLERVSLMENDFEEIPS-NMSPHCEILSTLLLQHNKYLQRIP--ECFFVHMHGLKVLNLCHTSIEVLPNSV--SDLTNL  226 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~~i--~~L~~L  226 (521)
                      +++|.+++.++.+...+. ...+.|++++.|+++.|- +..+-  ..+...+++|+.|+++.|.+....++.  ..+.+|
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            445555555555444432 233345555555555543 22211  123345555555555555544322221  134455


Q ss_pred             ceeecccC
Q 041519          227 RSLLLRWC  234 (521)
Q Consensus       227 ~~L~l~~~  234 (521)
                      +.|.++.|
T Consensus       200 K~L~l~~C  207 (505)
T KOG3207|consen  200 KQLVLNSC  207 (505)
T ss_pred             heEEeccC
Confidence            55555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=2.2e-06  Score=79.50  Aligned_cols=58  Identities=26%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             CCcEEEccCCCCC--ccCccccCCcccceeecccCCCCCc-cC-CccCCCCCCEEEeeCC-cCc
Q 041519          202 GLKVLNLCHTSIE--VLPNSVSDLTNLRSLLLRWCGILKR-VP-SLAKLLALQYLDLEGT-WIE  260 (521)
Q Consensus       202 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~-lp-~~~~l~~L~~L~l~~~-~l~  260 (521)
                      .|++|||++..++  .+..-+..+.+|+.|.+.|+. +.+ +- .+.+-.+|+.|+++.| +++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t  248 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFT  248 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccc
Confidence            3566666665544  333444455556666665543 222 22 4555566666666666 444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=2e-05  Score=84.70  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=74.7

Q ss_pred             CCccEEEeecCCC--CCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCccccee
Q 041519          152 ENLERVSLMENDF--EEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSL  229 (521)
Q Consensus       152 ~~l~~L~l~~~~~--~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  229 (521)
                      .++++|++.+...  ..+|...+..+|.|++|.+.+-.....--...+.++++|+.||+++++++.+ .+++.|+||+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            3678888877442  2344445567889999988875422222223457889999999999988877 568899999999


Q ss_pred             ecccCCCCCccC---CccCCCCCCEEEeeCCcC
Q 041519          230 LLRWCGILKRVP---SLAKLLALQYLDLEGTWI  259 (521)
Q Consensus       230 ~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l  259 (521)
                      .+++-. +..-.   .+.+|++|++||++....
T Consensus       201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             hccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence            888743 44333   578899999999988743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=7.9e-05  Score=49.39  Aligned_cols=40  Identities=25%  Similarity=0.423  Sum_probs=29.4

Q ss_pred             CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC
Q 041519          176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP  217 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp  217 (521)
                      ++|++|++++|+ +..+|+.+ +++++|++|++++|.++.++
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l-~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPEL-SNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCC-CcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence            467888888887 77787764 78888888888888877654

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.58  E-value=8.3e-06  Score=67.12  Aligned_cols=86  Identities=24%  Similarity=0.383  Sum_probs=75.9

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      .+...++++|.+..+|+.+..+++.+++|++.+|. +..+|..+ ..++.||.|+++.|.+...|.-|..|++|-+|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            56778899999999999888888899999999998 99999984 89999999999999999999988899999999988


Q ss_pred             cCCCCCccC
Q 041519          233 WCGILKRVP  241 (521)
Q Consensus       233 ~~~~l~~lp  241 (521)
                      ++. ...+|
T Consensus       132 ~na-~~eid  139 (177)
T KOG4579|consen  132 ENA-RAEID  139 (177)
T ss_pred             CCc-cccCc
Confidence            865 66666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.53  E-value=5.7e-06  Score=85.41  Aligned_cols=117  Identities=27%  Similarity=0.313  Sum_probs=84.9

Q ss_pred             CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEe
Q 041519          177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDL  254 (521)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l  254 (521)
                      .|.+.++++|. +..+..+. .-+++|+.|+|++|+++..- .+..+.+|++|||++|. +..+|  +...+ +|+.|.+
T Consensus       165 ~L~~a~fsyN~-L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNR-LVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhh-HHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeee
Confidence            45555556655 44444443 67888999999999988665 57889999999999975 88888  33333 3999999


Q ss_pred             eCCcCcccCccccCCCCCcccccccc-------hHHHHhhHhcccceEEEecc
Q 041519          255 EGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       255 ~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~~~L~~L~~~~~~  300 (521)
                      ++|.++.+ .++.+|++|++|++.+.       ...+..|. .|+.|.+-.+.
T Consensus       240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNP  290 (1096)
T KOG1859|consen  240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNP  290 (1096)
T ss_pred             cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCc
Confidence            99988877 46889999999998754       23355666 67777654443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.49  E-value=2.6e-05  Score=79.91  Aligned_cols=121  Identities=28%  Similarity=0.360  Sum_probs=70.5

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      .+..+.+..|.+..+-..+. .+++|+.|++.+|. +..+...+ ..+.+|++|++++|.|+.+.. +..+..|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~-~~~~l~~l~l~~n~-i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLS-KLKSLEALDLYDNK-IEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhhhhcccc-cccceeeeeccccc-hhhcccch-hhhhcchheeccccccccccc-hhhccchhhheec
Confidence            33444445555444222222 55666777776666 55555432 566777777777777666554 5566667777777


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF  278 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~  278 (521)
                      +|. +..++.+..+.+|+.+++++|.+..++.. ...+.++..+.+.
T Consensus       149 ~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  149 GNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG  194 (414)
T ss_pred             cCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence            764 66666666667777777777766655442 3445555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.31  E-value=4e-05  Score=78.55  Aligned_cols=109  Identities=28%  Similarity=0.381  Sum_probs=91.6

Q ss_pred             ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519          148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR  227 (521)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~  227 (521)
                      ...++++..+++..|.+..+...+ ..+.+|++|++++|. ++.+..  +..+..|+.|++.+|.+..+.. +..+..|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhcccch-hhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence            445678999999999999887643 378999999999998 888776  5788889999999999987765 56699999


Q ss_pred             eeecccCCCCCccCC--ccCCCCCCEEEeeCCcCccc
Q 041519          228 SLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEV  262 (521)
Q Consensus       228 ~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~l~~l  262 (521)
                      .+++++|. +..++.  ...+.+++.+++.++.+..+
T Consensus       166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  166 LLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             cccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence            99999976 888875  58999999999999977654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.26  E-value=0.00044  Score=61.00  Aligned_cols=102  Identities=24%  Similarity=0.329  Sum_probs=67.3

Q ss_pred             CCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcccc-CCcccceeecccCCCCCccC---CccCCCCCC
Q 041519          175 CEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVS-DLTNLRSLLLRWCGILKRVP---SLAKLLALQ  250 (521)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~  250 (521)
                      ......+++++|. +..++.  |..++.|..|.+.+|.|+.+-+.+. .+++|..|.+.+|. +.++.   .+..+++|+
T Consensus        41 ~d~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccceecccccc-hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccc
Confidence            4466677777776 666655  5677788888888888776655555 45568888888765 66554   356677888


Q ss_pred             EEEeeCCcCcccCc----cccCCCCCcccccccc
Q 041519          251 YLDLEGTWIEEVPE----GMEMLENLSHLSLFMA  280 (521)
Q Consensus       251 ~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~  280 (521)
                      +|.+-+|.+...+.    -+.++++|+.|+...+
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            88887776554332    2455666666665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=1.4e-05  Score=74.23  Aligned_cols=85  Identities=20%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCCccC---CccCCCCCCE
Q 041519          176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKLLALQY  251 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~~  251 (521)
                      +.|+.|+++.......-...+++.+..|+.|.+.++.+. .+-..|.+=.+|+.|+++.|.++....   -+.++..|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            458888888766322333456788999999999999887 455667788899999999999888775   3788999999


Q ss_pred             EEeeCCcCc
Q 041519          252 LDLEGTWIE  260 (521)
Q Consensus       252 L~l~~~~l~  260 (521)
                      |++++|.+.
T Consensus       265 LNlsWc~l~  273 (419)
T KOG2120|consen  265 LNLSWCFLF  273 (419)
T ss_pred             cCchHhhcc
Confidence            999999543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.23  E-value=0.00015  Score=78.10  Aligned_cols=80  Identities=18%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             CCccEEEcccCcCC-CCCchhHhhCCCCCcEEEccCCCCC--ccCccccCCcccceeecccCCCCCccCCccCCCCCCEE
Q 041519          176 EILSTLLLQHNKYL-QRIPECFFVHMHGLKVLNLCHTSIE--VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYL  252 (521)
Q Consensus       176 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L  252 (521)
                      .+|+.|+++|...+ ...|..+...+|.|+.|.+++-.+.  .+-.-..++++|..||++++ ++..+..+++|++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence            35566666554332 2333344344556666655554332  22222334555555555552 34444445555555555


Q ss_pred             EeeC
Q 041519          253 DLEG  256 (521)
Q Consensus       253 ~l~~  256 (521)
                      .+.+
T Consensus       201 ~mrn  204 (699)
T KOG3665|consen  201 SMRN  204 (699)
T ss_pred             hccC
Confidence            4444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.17  E-value=5.2e-05  Score=62.50  Aligned_cols=87  Identities=28%  Similarity=0.418  Sum_probs=53.6

Q ss_pred             CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEe
Q 041519          176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDL  254 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l  254 (521)
                      ..|...++++|. +..+|..+-..++.+..|++++|.++.+|.++..++.|+.|+++.|+ +...| -+..|.+|-.|+.
T Consensus        53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence            455556666666 66666665455556666666666666666666666666666666655 55555 4555666666666


Q ss_pred             eCCcCcccCc
Q 041519          255 EGTWIEEVPE  264 (521)
Q Consensus       255 ~~~~l~~lp~  264 (521)
                      .++.+.++|-
T Consensus       131 ~~na~~eid~  140 (177)
T KOG4579|consen  131 PENARAEIDV  140 (177)
T ss_pred             CCCccccCcH
Confidence            6665555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.05  E-value=1.2e-05  Score=83.08  Aligned_cols=123  Identities=24%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      .+...++++|.+..+...+- -++.++.|++++|+ +....  .+..+++|+.|||++|.+..+|.--..=.+|+.|.++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQ-LLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhh-hhhhH--HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence            56667777777776655543 56788888888888 55554  3578888888888888888777521122248888888


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccc
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA  280 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~  280 (521)
                      +|. ++.+-.+.+|.+|+.||++.|-+....+  -++.|..|+.|.+.+.
T Consensus       241 nN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  241 NNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             ccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            875 7777788888888888888885543211  1445666666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.94  E-value=0.0026  Score=56.30  Aligned_cols=103  Identities=28%  Similarity=0.389  Sum_probs=80.0

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC--ccccCCcccce
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP--NSVSDLTNLRS  228 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~  228 (521)
                      ..+...+++..|.+..++.  ++.++.|.+|.+.+|. +..+.+.+-..+++|..|.|.+|++..+-  .-+..++.|++
T Consensus        41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhccc--CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            3466778888888776643  3588999999999998 88888877667788999999999877442  22567789999


Q ss_pred             eecccCCCCCccC-----CccCCCCCCEEEeeCC
Q 041519          229 LLLRWCGILKRVP-----SLAKLLALQYLDLEGT  257 (521)
Q Consensus       229 L~l~~~~~l~~lp-----~~~~l~~L~~L~l~~~  257 (521)
                      |.+-+|. +..-.     -+.++++|++||..+-
T Consensus       118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            9999876 55554     2788999999998764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.77  E-value=0.00012  Score=69.65  Aligned_cols=86  Identities=17%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CCCCccEEEcccCcCCCC----CchhHhhCCCCCcEEEccCCC---CC-ccCcc-------ccCCcccceeecccCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQR----IPECFFVHMHGLKVLNLCHTS---IE-VLPNS-------VSDLTNLRSLLLRWCGILK  238 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~---l~-~lp~~-------i~~L~~L~~L~l~~~~~l~  238 (521)
                      .+..+..+++++|. ++.    .-...+.+.+.||..++++--   .. ++|..       +-..++|++|+||+|-.-.
T Consensus        28 ~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            45678888888886 332    112234667788888877531   21 44443       2234477777777765322


Q ss_pred             ccC-C----ccCCCCCCEEEeeCCcCc
Q 041519          239 RVP-S----LAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       239 ~lp-~----~~~l~~L~~L~l~~~~l~  260 (521)
                      .-+ .    +.+...|++|.+.+|++.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            221 1    455667777777777554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.00087  Score=62.64  Aligned_cols=39  Identities=23%  Similarity=0.276  Sum_probs=18.5

Q ss_pred             CCCCccEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSI  213 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l  213 (521)
                      .++.++.+++.+|. +....+  .+..++++|++|+++.|++
T Consensus        69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSL  109 (418)
T ss_pred             Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcC
Confidence            34455555555554 333322  2334555555555555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.36  E-value=0.00023  Score=69.33  Aligned_cols=293  Identities=21%  Similarity=0.160  Sum_probs=145.1

Q ss_pred             CCccEEEcccCcCCCCCch-hHhhCCCCCcEEEccCCC-CC-ccCcccc-CCcccceeecccCCCCCccC-C--ccCCCC
Q 041519          176 EILSTLLLQHNKYLQRIPE-CFFVHMHGLKVLNLCHTS-IE-VLPNSVS-DLTNLRSLLLRWCGILKRVP-S--LAKLLA  248 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~-l~-~lp~~i~-~L~~L~~L~l~~~~~l~~lp-~--~~~l~~  248 (521)
                      ..|+.|.+.|+.....-+- .+-.+++++..|++.++. ++ ..-.+++ ...+|++|++..|..++... .  ...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4678888888775444332 234678888888888875 44 1122233 67789999999988777665 2  456789


Q ss_pred             CCEEEeeCC-cCcc--cCccccCCCCCcccccccc-hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCc--ceee
Q 041519          249 LQYLDLEGT-WIEE--VPEGMEMLENLSHLSLFMA-AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKN--YCLL  322 (521)
Q Consensus       249 L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~~~~~-~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~--~l~~  322 (521)
                      |+++++++| .++.  +-.-....+++..+...++ ..+...+.                 ........+..+.  ....
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~-----------------~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL-----------------KAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH-----------------HHhccChHhhccchhhhcc
Confidence            999999998 5554  1111122222333322211 00000000                 0000000000000  0000


Q ss_pred             eecCCCCCCccccceeeeeeeeeecCccc--------ccCccccceEEEecccCcccccccccCCCcccccccchhhccC
Q 041519          323 LSASGKRGFLEVDKSVRLFACKICETEET--------IVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQ  394 (521)
Q Consensus       323 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~~--------~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~  394 (521)
                       ..+...+ ........|+.+..++....        ..--.+|+.|.+.+|..+.+..        ++.+    ..+.+
T Consensus       281 -lTD~~~~-~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------ft~l----~rn~~  346 (483)
T KOG4341|consen  281 -LTDEDLW-LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------FTML----GRNCP  346 (483)
T ss_pred             -ccchHHH-HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------hhhh----hcCCh
Confidence             0000000 00000112222222221000        0112456666666665533321        1100    13455


Q ss_pred             CCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccccccc---CCCcccCCCccEEEEecCC
Q 041519          395 NLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICS---DNGVLVCNSLQEIEVYNCP  471 (521)
Q Consensus       395 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~---~~~~~~~p~L~~L~i~~C~  471 (521)
                      .|+.+++.+|..+..-.              ........|.|++|.+++|.....-..   ..+......|+.+++.+||
T Consensus       347 ~Le~l~~e~~~~~~d~t--------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGT--------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             hhhhhcccccceehhhh--------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            66666666664433220              001124689999999999887665411   1234456789999999999


Q ss_pred             CcccccCcCcccCCCCCCCCCCceEEEee------hhhccccccCCcchh--hhcCC
Q 041519          472 KLKRLSLSLPLLDNGQPSPPPALEVIEIK------KELWESLEWDQPNAK--DVLNP  520 (521)
Q Consensus       472 ~L~~lP~~~~~l~~~~~~~~~~L~~l~~~------~~~~~~l~~~~~~~~--~~~~p  520 (521)
                      ..++-  .+.++++     +++|+.+++.      ++-.+++.-.=|++|  ++|.|
T Consensus       413 ~i~d~--~Le~l~~-----c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~  462 (483)
T KOG4341|consen  413 LITDA--TLEHLSI-----CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP  462 (483)
T ss_pred             CchHH--HHHHHhh-----CcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence            76543  4566666     7789998876      444555444444444  56655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.0026  Score=58.60  Aligned_cols=76  Identities=26%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             CCcccceeecccC--CCCCccC-CccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc---------hHHHHhh
Q 041519          222 DLTNLRSLLLRWC--GILKRVP-SLAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA---------AEEAARL  287 (521)
Q Consensus       222 ~L~~L~~L~l~~~--~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~---------~~~i~~L  287 (521)
                      .|++|++|.++.|  .....++ ...++++|++|++++|+++.+-  ....++.+|..|+++.+         -..+.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            3445555555555  2223333 3334455555555555443210  11334444445544444         2234455


Q ss_pred             HhcccceEEEe
Q 041519          288 SDRLDTFVGYF  298 (521)
Q Consensus       288 ~~~L~~L~~~~  298 (521)
                      + +|..|+...
T Consensus       143 ~-~L~~LD~~d  152 (260)
T KOG2739|consen  143 P-SLKYLDGCD  152 (260)
T ss_pred             h-hhccccccc
Confidence            6 777776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.89  E-value=0.004  Score=57.37  Aligned_cols=59  Identities=25%  Similarity=0.298  Sum_probs=25.7

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccC--cCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHN--KYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      .+..+++.+..++.+..  ++.+++|+.|.++.|  +....++.-. ..+++|++|++++|.++
T Consensus        44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccc
Confidence            44444444444433322  124555555555555  2222222222 33455555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.00048  Score=63.72  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=46.0

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc--cccCCcccceee
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN--SVSDLTNLRSLL  230 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~  230 (521)
                      +++.|..+++.++.+.  +..+|+.|++|.|+-|+ ++.+.+  +..++.|+.|.|+.|.|..+-.  -+.++++|++|.
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4555666666666552  33456666666666666 555554  4566666666666666554332  234556666666


Q ss_pred             cccCCCCC
Q 041519          231 LRWCGILK  238 (521)
Q Consensus       231 l~~~~~l~  238 (521)
                      |..|....
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            65554333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.34  E-value=0.003  Score=55.91  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=37.3

Q ss_pred             hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecC
Q 041519          391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNC  470 (521)
Q Consensus       391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C  470 (521)
                      ..++.++.|.+.+|..+.+..-..              .++.+|+|+.|+|++|+++++-... ....|++|+.|.+.+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~--------------l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLER--------------LGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDL  186 (221)
T ss_pred             hccchhhhheeccccchhhHHHHH--------------hcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCc
Confidence            456666666666666655442111              1235666667776666666553221 2234566666666665


Q ss_pred             CCcc
Q 041519          471 PKLK  474 (521)
Q Consensus       471 ~~L~  474 (521)
                      |...
T Consensus       187 ~~v~  190 (221)
T KOG3864|consen  187 PYVA  190 (221)
T ss_pred             hhhh
Confidence            5433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.22  E-value=0.0062  Score=33.55  Aligned_cols=17  Identities=29%  Similarity=0.581  Sum_probs=7.6

Q ss_pred             CcEEEccCCCCCccCcc
Q 041519          203 LKVLNLCHTSIEVLPNS  219 (521)
Q Consensus       203 L~~L~L~~~~l~~lp~~  219 (521)
                      |++|++++|.++.+|.+
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.19  E-value=0.0084  Score=33.01  Aligned_cols=20  Identities=35%  Similarity=0.760  Sum_probs=10.9

Q ss_pred             CCCEEEeeCCcCcccCcccc
Q 041519          248 ALQYLDLEGTWIEEVPEGME  267 (521)
Q Consensus       248 ~L~~L~l~~~~l~~lp~~i~  267 (521)
                      +|++|++++|.++.+|.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35555555555555555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.18  E-value=0.073  Score=44.42  Aligned_cols=107  Identities=19%  Similarity=0.333  Sum_probs=55.8

Q ss_pred             ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccce
Q 041519          150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRS  228 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~  228 (521)
                      ..++++.+.+.. .+..++...|..+++|+.+.+..+  +..++...|..++.++.+.+.. .+..++. .+....+|+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            344677777663 567777777777778888887663  6777777777777788888865 4544443 3445778888


Q ss_pred             eecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc
Q 041519          229 LLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE  264 (521)
Q Consensus       229 L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~  264 (521)
                      +.+..  .+..++  .+.+. +|+.+.+.. .+..++.
T Consensus        86 i~~~~--~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~  119 (129)
T PF13306_consen   86 IDIPS--NITEIGSSSFSNC-NLKEINIPS-NITKIEE  119 (129)
T ss_dssp             EEETT--T-BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred             cccCc--cccEEchhhhcCC-CceEEEECC-CccEECC
Confidence            88765  266666  46665 777777654 3444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=0.0025  Score=59.12  Aligned_cols=102  Identities=25%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCC---ccCCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPS---LAKLLALQ  250 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~---~~~l~~L~  250 (521)
                      ++.+.+.|++.||. +.++.  +..+|+.|.+|.|+-|+|+.+-. +..+++|+.|.|+.|. +..+-.   +.++++|+
T Consensus        17 dl~~vkKLNcwg~~-L~DIs--ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCG-LDDIS--ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCC-ccHHH--HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            45677888888887 66654  46799999999999999987755 7888999999999875 766652   66788888


Q ss_pred             EEEeeCC-cCcccCcc-----ccCCCCCcccccccc
Q 041519          251 YLDLEGT-WIEEVPEG-----MEMLENLSHLSLFMA  280 (521)
Q Consensus       251 ~L~l~~~-~l~~lp~~-----i~~l~~L~~L~~~~~  280 (521)
                      .|.+..| ....-+..     +.-|.+|+.|+-..+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V  127 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV  127 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence            8888877 33332221     334455555544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.014  Score=54.79  Aligned_cols=100  Identities=21%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             cEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCCC---ccCccccCCcccceeecccCCCCCccCCc-cCCCCCCEE
Q 041519          179 STLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSIE---VLPNSVSDLTNLRSLLLRWCGILKRVPSL-AKLLALQYL  252 (521)
Q Consensus       179 ~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~~l~~L~~L  252 (521)
                      +.|.+.++. +....+  .+-...++++.+||.+|.++   ++-.-+.++++|++|+++.|.--..+-+. ..+.+|++|
T Consensus        48 ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   48 ELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            345555554 443332  23346778899999999876   33333458889999999887532222222 355788888


Q ss_pred             EeeCCcC--cccCccccCCCCCccccccc
Q 041519          253 DLEGTWI--EEVPEGMEMLENLSHLSLFM  279 (521)
Q Consensus       253 ~l~~~~l--~~lp~~i~~l~~L~~L~~~~  279 (521)
                      -+.|+.+  +..-..+..+..++.|++..
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence            8888843  34444555666666665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.0064  Score=53.91  Aligned_cols=63  Identities=22%  Similarity=0.361  Sum_probs=44.9

Q ss_pred             ccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          431 VTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       431 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      ..+++++.|.+.+|..+..|+.+.-...+|+|+.|+|++||+.++-  ++..|..     +++|+.+.+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~-----lknLr~L~l~  184 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLK-----LKNLRRLHLY  184 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHH-----hhhhHHHHhc
Confidence            4578888999999999888887644446789999999999987764  3333333     4446666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.17  E-value=0.035  Score=53.39  Aligned_cols=107  Identities=22%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             CCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCC----CchhHhhCCCCCcEEEccCCCCC-----ccCc
Q 041519          152 ENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQR----IPECFFVHMHGLKVLNLCHTSIE-----VLPN  218 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~-----~lp~  218 (521)
                      +++|.+..+.|++..-+..    .+...+.|+.+.+..|. +..    +-..-|..+++|++|||+.|.++     .+-.
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            5788888888887755433    23455788888888776 321    11122478888999999888765     3445


Q ss_pred             cccCCcccceeecccCCCCCccC--C-----ccCCCCCCEEEeeCCcCc
Q 041519          219 SVSDLTNLRSLLLRWCGILKRVP--S-----LAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       219 ~i~~L~~L~~L~l~~~~~l~~lp--~-----~~~l~~L~~L~l~~~~l~  260 (521)
                      .+..+++|+.|++++|- ++.--  .     -...++|++|.+.+|.++
T Consensus       236 aL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             Hhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            56677788888888875 43211  1     123677888888887555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.69  E-value=0.044  Score=27.97  Aligned_cols=17  Identities=24%  Similarity=0.397  Sum_probs=10.0

Q ss_pred             CCccEEEEecCCCccccc
Q 041519          460 NSLQEIEVYNCPKLKRLS  477 (521)
Q Consensus       460 p~L~~L~i~~C~~L~~lP  477 (521)
                      ++|+.|++++|. |+++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467888888887 77776

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.18  E-value=0.18  Score=41.93  Aligned_cols=93  Identities=20%  Similarity=0.350  Sum_probs=58.0

Q ss_pred             CCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccCCCCCccC--Cc
Q 041519          167 IPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SL  243 (521)
Q Consensus       167 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~  243 (521)
                      ++...|..+++|+.+.+.. . +..++...|..+.+|+.+.+.++ +..++. .+....+|+.+.+..  .+..++  .+
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F   77 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF   77 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence            4566677888999999874 3 77888888899999999999875 776654 456777899999965  467776  47


Q ss_pred             cCCCCCCEEEeeCCcCcccCcc
Q 041519          244 AKLLALQYLDLEGTWIEEVPEG  265 (521)
Q Consensus       244 ~~l~~L~~L~l~~~~l~~lp~~  265 (521)
                      ..+.+|+.+++..+ +..++..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~   98 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSS   98 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTT
T ss_pred             cccccccccccCcc-ccEEchh
Confidence            77999999998664 5555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.07  E-value=0.067  Score=27.28  Aligned_cols=15  Identities=27%  Similarity=0.547  Sum_probs=5.2

Q ss_pred             CCcEEEccCCCCCcc
Q 041519          202 GLKVLNLCHTSIEVL  216 (521)
Q Consensus       202 ~L~~L~L~~~~l~~l  216 (521)
                      +|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444433

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.64  E-value=0.46  Score=27.07  Aligned_cols=18  Identities=28%  Similarity=0.538  Sum_probs=9.5

Q ss_pred             CCCcEEEccCCCCCccCc
Q 041519          201 HGLKVLNLCHTSIEVLPN  218 (521)
Q Consensus       201 ~~L~~L~L~~~~l~~lp~  218 (521)
                      ++|++|+|++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.64  E-value=0.46  Score=27.07  Aligned_cols=18  Identities=28%  Similarity=0.538  Sum_probs=9.5

Q ss_pred             CCCcEEEccCCCCCccCc
Q 041519          201 HGLKVLNLCHTSIEVLPN  218 (521)
Q Consensus       201 ~~L~~L~L~~~~l~~lp~  218 (521)
                      ++|++|+|++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.53  E-value=0.15  Score=47.51  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             CCCccEEEcccCcCCCCCc-h---hHhhCCCCCcEEEccCCC---CC-ccC-------ccccCCcccceeecccCCCCCc
Q 041519          175 CEILSTLLLQHNKYLQRIP-E---CFFVHMHGLKVLNLCHTS---IE-VLP-------NSVSDLTNLRSLLLRWCGILKR  239 (521)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~-~---~~~~~l~~L~~L~L~~~~---l~-~lp-------~~i~~L~~L~~L~l~~~~~l~~  239 (521)
                      +..+..+++++|. ++.-. .   ..+.+-++|++.+++.-.   .. ++|       +.+-++++|+..+++.|..-..
T Consensus        29 ~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            5678888999987 43311 1   123566788888887632   11 333       3455678888888888765444


Q ss_pred             cC-C----ccCCCCCCEEEeeCCcCccc
Q 041519          240 VP-S----LAKLLALQYLDLEGTWIEEV  262 (521)
Q Consensus       240 lp-~----~~~l~~L~~L~l~~~~l~~l  262 (521)
                      .| .    +.+-..|.+|.+++|++..+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            44 2    56777888888888876644

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.83  E-value=0.48  Score=27.02  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=16.3

Q ss_pred             CCCCCEEEeeCCcCcccCccc
Q 041519          246 LLALQYLDLEGTWIEEVPEGM  266 (521)
Q Consensus       246 l~~L~~L~l~~~~l~~lp~~i  266 (521)
                      |.+|++|++++|.++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.83  E-value=0.48  Score=27.02  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=16.3

Q ss_pred             CCCCCEEEeeCCcCcccCccc
Q 041519          246 LLALQYLDLEGTWIEEVPEGM  266 (521)
Q Consensus       246 l~~L~~L~l~~~~l~~lp~~i  266 (521)
                      |.+|++|++++|.++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=86.66  E-value=3.8  Score=46.71  Aligned_cols=107  Identities=15%  Similarity=0.200  Sum_probs=71.8

Q ss_pred             HHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHH-HhHhcCCchhHHHHHHHHHH
Q 041519           12 EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLE-FSYHRLKDEKLQQCFLYCAL   90 (521)
Q Consensus        12 ~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~-lSY~~L~~~~lk~cfl~~s~   90 (521)
                      +...+|.+.|+|.|+++..++..+.......  ......+...      ....+...+. -.++.|| .+.++.++..|+
T Consensus       206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~  276 (903)
T PRK04841        206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGI------NASHLSDYLVEEVLDNVD-LETRHFLLRCSV  276 (903)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCC------CchhHHHHHHHHHHhcCC-HHHHHHHHHhcc
Confidence            3457899999999999999888776532100  1111111100      0123444332 2378999 899999999998


Q ss_pred             -----------------HhHHHHHHHHcccccc-ccC-CCccccchHHHHHHHHHh
Q 041519           91 -----------------GHTILNRLVNCCLLES-AKD-GSCVKMHDLIRDMALRIT  127 (521)
Q Consensus        91 -----------------g~~~~~~L~~~~l~~~-~~~-~~~~~mhdli~dl~~~i~  127 (521)
                                       +...+++|.++++|.. .+. +..|+.|++++++.....
T Consensus       277 ~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        277 LRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             cccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence                             5678999999998653 332 247889999999988664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.68  E-value=0.027  Score=51.13  Aligned_cols=82  Identities=18%  Similarity=0.149  Sum_probs=51.9

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEE
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYL  252 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L  252 (521)
                      .+....+|+++.|. ...+...+ ..++.|.-|+++.|.+..+|..++.+..++.+++..|. ....| +.+++++++++
T Consensus        40 ~~kr~tvld~~s~r-~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNR-LVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhH-HHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence            44566666666665 44444433 55556666667766666777766776667776666643 66667 67777777777


Q ss_pred             EeeCCc
Q 041519          253 DLEGTW  258 (521)
Q Consensus       253 ~l~~~~  258 (521)
                      +..++.
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            766663

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.50  E-value=0.021  Score=51.76  Aligned_cols=87  Identities=13%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      .+..+.|+++.|....+...+. .+..+..|+++.|. +..+|.++ +....++.+++..|..+..|.+.+.++++++++
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s-~~t~~~rl~~sknq-~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFS-ILTRLVRLDLSKNQ-IKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHhhccchH-HHHHHHHHhccHhh-HhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            3567888888888877776654 67788899999888 88899886 889999999999999999999999999999999


Q ss_pred             cccCCCCCcc
Q 041519          231 LRWCGILKRV  240 (521)
Q Consensus       231 l~~~~~l~~l  240 (521)
                      +.++.....+
T Consensus       118 ~k~~~~~~~~  127 (326)
T KOG0473|consen  118 QKKTEFFRKL  127 (326)
T ss_pred             hccCcchHHH
Confidence            9987643333

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.02  E-value=0.74  Score=26.29  Aligned_cols=17  Identities=24%  Similarity=0.811  Sum_probs=12.8

Q ss_pred             CCCccEEEEecCCCccc
Q 041519          459 CNSLQEIEVYNCPKLKR  475 (521)
Q Consensus       459 ~p~L~~L~i~~C~~L~~  475 (521)
                      +|+|++|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            47788888888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	521
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-04

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 133 FMVTAGLRLLKFP-GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR 191
           +++  G +L   P G  +   NL+ + L+EN  + +P  +      L+ L L HN+ LQ 
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQS 147
Query: 192 IPECFFVHMHGLKVLNLCHTSIEVLPNSVSD-LTNLRSLLLRWCGILKRVP 241
           +P+  F  +  L  L+L +  ++ LP  V D LT L+ L L +   LK VP
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVP 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	521
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	9e-17
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 82.0 bits (202), Expect = 9e-17
 Identities = 19/160 (11%), Positives = 38/160 (23%), Gaps = 40/160 (25%)

Query: 9   LNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRS-----LNDVDT 63
             ++++N+ +E     P  ++    S   +    +     N+L  R              
Sbjct: 314 KEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYK 372

Query: 64  KVFGRLEFSYHRLKDEKLQQCFLYCAL-------------------------------GH 92
            +   L+     L DE  +    +  +                                 
Sbjct: 373 SLAMALQRCVEVLSDE-DRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVA 431

Query: 93  TILNRLVNCCLLESAKDGS--CVKMHDLIRDMALRITSKS 130
             L RL     L S K       K+  +I      +    
Sbjct: 432 DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 28/142 (19%)

Query: 11  KEIINEVVEECGCLPLAIVTVAASMSG-EEEIYEWQNALN--ELRGRLRSLNDVDTKVFG 67
            E  + +++EC   PL +  + A +         +   L   + +   +S +     +  
Sbjct: 307 PEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366

Query: 68  RLEFSYHRLKDEKLQQCFLYCAL----------------------GHTILNRLVNCCLLE 105
            +  S   L  E ++  +   ++                         IL   VN  LL 
Sbjct: 367 AMSISVEML-REDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLF 425

Query: 106 SAKDG--SCVKMHDLIRDMALR 125
             ++G      +HDL  D    
Sbjct: 426 CDRNGKSFRYYLHDLQVDFLTE 447

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
           +     + L      + P         L  + +     L  +P+       GL+ L L  
Sbjct: 80  QPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAG-LMELPDTMQ-QFAGLETLTLAR 136

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVP----------SLAKLLALQYLDLEGTWIE 260
             +  LP S++ L  LR L +R C  L  +P              L+ LQ L LE T I 
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 261 EVPEGMEMLENLSHLSL 277
            +P  +  L+NL  L +
Sbjct: 197 SLPASIANLQNLKSLKI 213

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 142 LKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMH 201
               GE +   NL+ + L       +P++++ + + L +L ++++  L  +      H+ 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSP-LSALGPAIH-HLP 229

Query: 202 GLKVLNLCHTS-IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEG-TW 258
            L+ L+L   + +   P        L+ L+L+ C  L  +P  + +L  L+ LDL G   
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 259 IEEVPEGMEMLENLSHLSL 277
           +  +P  +  L     + +
Sbjct: 290 LSRLPSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 153 NLERVSLME-NDFEEIPSNMS--------PHCEILSTLLLQHNKYLQRIPECFFVHMHGL 203
            L  +S+    +  E+P  ++             L +L L+    ++ +P     ++  L
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIA-NLQNL 208

Query: 204 KVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEG-TWIEE 261
           K L + ++ +  L  ++  L  L  L LR C  L+  P        L+ L L+  + +  
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 262 VPEGMEMLENLSHLSL 277
           +P  +  L  L  L L
Sbjct: 269 LPLDIHRLTQLEKLDL 284

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 15/151 (9%)

Query: 139 LRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEI-LSTLLLQHNKYLQRIPECFF 197
                    Q    N +  +      +     +    +     L L+    L + P+  F
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAF 101

Query: 198 VHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEG 256
             +  L+ + +    +  LP+++     L +L L     L+ +P S+A L  L+ L +  
Sbjct: 102 -RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRA 159

Query: 257 TW-IEEVPEGM---------EMLENLSHLSL 277
              + E+PE +         + L NL  L L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRL 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL+ + +  +    +   +  H   L  L L+    L+  P  F      LK L L   S
Sbjct: 207 NLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCS 264

Query: 213 -IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE 264
            +  LP  +  LT L  L LR C  L R+P  +A+L A   + +      ++ +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW 233
           H      L  Q +  L+   +     +   +       +        ++  N + +  R 
Sbjct: 10  HSSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRWHSAWRQANSNNPQ-IETRT 64

Query: 234 CGILKRVPSL---AKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
              LK    L   A       L+L    + + P+    L +L H+++
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI 111

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + +         + +      L  L +  N + +      F  +  L  L+L    
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM--E 267
           +E L  +  + L++L+ L +        + +     L +LQ LD     I    +     
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 268 MLENLSHLSL 277
              +L+ L+L
Sbjct: 246 FPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHT 211
           +L+ + L  N    + SN     E L  L  QH+  L+++ E   F+ +  L  L++ HT
Sbjct: 79  SLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
              V  N + + L++L  L +      +        +L  L +LDL    +E++      
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 268 MLENLSHLSL 277
            L +L  L++
Sbjct: 197 SLSSLQVLNM 206

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-- 210
           +   +         +P+ +      L    L+ NK LQ +P   F  +  L  L+L    
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSATRLE---LESNK-LQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 211 -TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGM--E 267
            +       S    T+L+ L L + G++    +   L  L++LD + + ++++ E     
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 268 MLENLSHLSL 277
            L NL +L +
Sbjct: 124 SLRNLIYLDI 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           ++E +    N+   +  +          + L +NK +  + +        ++ L+L    
Sbjct: 100 SIETLHAANNNISRVSCSRGQG---KKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 213 IEVLPNS--VSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
           I+ +  +   +    L  L L++  I   V        L+ LDL    +  +    +   
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 271 NLSHLSL 277
            ++ +SL
Sbjct: 215 GVTWISL 221

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 8/126 (6%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
              +   + ++  ++  +++      +  L L  N  L +I          L++LNL   
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +      +  L+ LR+L L    +      L    +++ L      I  V       + 
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSC--SRGQG 121

Query: 272 LSHLSL 277
             ++ L
Sbjct: 122 KKNIYL 127

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 166 EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV-SDLT 224
           EI  N +          +  +  L++           +K L+L    +  +  +  +  T
Sbjct: 4   EIKQNGN----RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 225 NLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
            L  L L    +      L  L  L+ LDL   +++E+        ++  L  
Sbjct: 59  KLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 139 LRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFV 198
           +  + F       + LE ++L  N   ++   +      L TL L  NK L  +   F  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK-LAFMGPEFQ- 211

Query: 199 HMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW----CGILKRVPSLAKLLALQYLDL 254
              G+  ++L +  + ++  ++    NL    LR     CG L+     +K   +Q +  
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAK 269

Query: 255 EG-TWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRL 291
           +    +    E    +  L H   +   +  A  +DRL
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 153 NLERVSLMENDFEEIPSNMSP-------HCEILSTLLLQHNKYLQRIP-ECFFVHMHGLK 204
            +  + L  N    IP N          +  +L+T+ L+ NK L  +  +     +  L 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLS 756

Query: 205 VLNLCHTSIEVLPNSVSDLTNLRSLLLR------WCGILKRVP-SLAKLLALQYLDLEGT 257
            +++ +      P    + + L++  +R         IL++ P  +    +L  L +   
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 258 WIEEVPEGMEMLENLSHLSL 277
            I +V E  ++   L  L +
Sbjct: 817 DIRKVDE--KLTPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMS-PHCEILSTLLLQHNKYLQRIPECFFVH 199
             +   +++    ++   +  N+ EE P++ S      L  L   HNK ++ +    F  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEA--FGT 593

Query: 200 MHGLKVLNLCHTSIEVLPNSV-SDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDLEG 256
              L  L L +  IE +P    +    +  L      +  +  + +   +  +  +D   
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 257 TWIEEVPEGMEM------LENLSHLSL 277
             I      +          N S ++L
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTL 680

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 18/142 (12%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEI-----LSTLLLQHNKYLQRIPECFFVHMHGLKVL 206
             +  V    N       N+S   +       ST+ L +N+ +Q+ P   F     +  +
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTI 702

Query: 207 NLCHTSIEVLPNSV--------SDLTNLRSLLLRWCGILKRVPS---LAKLLALQYLDLE 255
            L +  +  +P +          +   L ++ LR+   L  +        L  L  +D+ 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVS 761

Query: 256 GTWIEEVPEGMEMLENLSHLSL 277
                  P        L    +
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 17/141 (12%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH-MHGLKVLNLCHT 211
            L  + L  N  EEIP +     + +  L   HNK L+ IP  F    ++ +  ++  + 
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 212 SIEVLPNSVSD------LTNLRSLLLRWCGILKRVPS-LAKLLALQYLDLEGTWIEEVPE 264
            I     ++S         N  ++ L +  I K      A    +  + L    +  +PE
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 265 GMEM--------LENLSHLSL 277
                          L+ + L
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 153 NLERVSLMENDF-EEIPSNMSPHCEILSTLLLQHNK---------YLQRIPECFFVHMHG 202
           +L  V L       ++P  +      L +L +  N+            R+ +        
Sbjct: 492 DLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDED-TGPK 549

Query: 203 LKVLNLCHTSIEVLPNSV--SDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIE 260
           +++  + + ++E  P S     +  L  L       ++ + +    + L  L L+   IE
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIE 608

Query: 261 EVPEGM-EMLENLSHLSL 277
           E+PE      + +  L  
Sbjct: 609 EIPEDFCAFTDQVEGLGF 626

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 8/133 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ +S   +                     + ++      + F  +   L + +L   +
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGI------LKRVP-SLAKLLALQYLDLEGTWIEEVPEG 265
           I   P     +     + L+   I      +  +  ++ +L  LQ +    +        
Sbjct: 408 INRNPEMKP-IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 266 MEMLENLSHLSLF 278
           ++  +  S  +  
Sbjct: 467 VDWEDANSDYAKQ 479

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L     +E+   +      L  L LQ N  LQ +P+  F  +  L  L L    
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR 164

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEG-MEM 268
           I  +P      L +L  LLL    +   V       L  L  L L    +  +P   +  
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 269 LENLSHLSL 277
           L  L +L L
Sbjct: 224 LRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L  N    I +       +L  L L  N  L+ +    F  +  L  L+L    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-EM 268
           ++ L   +   L  L+ L L+   + + +P      L  L +L L G  I  VPE     
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 269 LENLSHLSL 277
           L +L  L L
Sbjct: 176 LHSLDRLLL 184

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-T 211
             +R+ L  N    +P+     C  L+ L L  N  L RI    F  +  L+ L+L    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
            +  +  +    L  L +L L  CG+ + +       L ALQYL L+   ++ +P+    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 268 MLENLSHLSL 277
            L NL+HL L
Sbjct: 151 DLGNLTHLFL 160

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 153 NLERVSLMEN-DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            LE++ L +N     +          L TL L     LQ +    F  +  L+ L L   
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN 139

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-E 267
           +++ LP+    DL NL  L L    I   VP  +   L +L  L L    +  V      
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 268 MLENLSHLSLF 278
            L  L  L LF
Sbjct: 199 DLGRLMTLYLF 209

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L  N    +P         L  LLL  N+ +  +    F  +  L  L L   +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN 212

Query: 213 IEVLPNSV-SDLTNLRSLLLR 232
           +  LP    + L  L+ L L 
Sbjct: 213 LSALPTEALAPLRALQYLRLN 233

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L  N    I S        L  L L  N  L  + E  F  +  L+VL L +  
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH 123

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVP-----SLAKLLALQYLDLEGTWIEEVPEGM 266
           I V+  +   D+  L+ L L     + R P        KL  L  LDL    ++++P   
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 267 -EMLENLSHLSL 277
            + L       L
Sbjct: 183 LQKLPAWVKNGL 194

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            ++   L ++    +  ++  H   L  L L  N+ + +I +  F  +  L  LNL    
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF 334

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EM 268
           +  + + +  +L  L  L L +   ++ +   S   L  L+ L L+   ++ VP+G+ + 
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 269 LENLSHLSLF 278
           L +L  + L 
Sbjct: 394 LTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           ++  V L  N   E+        + L  L ++       I    F  +  L +L L +  
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRV---PSLAKLLALQYLDLEGTWIEEV-PEGM- 266
              L     + L NL  L L  C +   V        L +L+ L L    I+++ P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 267 EMLENLSHLSL 277
             +     L L
Sbjct: 151 LNMRRFHVLDL 161

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 128 SKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEI--LSTLLLQH 185
            +S        +   K              S    +F++  +      E   + T  L  
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 186 NKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS-- 242
           +K +  + +  F H   L+ L L    I  + ++    LT+L  L L     L  + S  
Sbjct: 285 SK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRM 342

Query: 243 LAKLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSL 277
              L  L+ LDL    I  + +     L NL  L+L
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHG-LKVLNLCHT 211
           NL+ + +     + +P     H      L +Q N  +  I    FV +     +L L   
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEM 268
            I+ + NS  + T L  L L     L+ +P            LD+  T I  +P   +E 
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 269 LENLSHLSLF 278
           L+ L   S +
Sbjct: 225 LKKLRARSTY 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
               + L +N  +EI ++     ++    L  +N  L+ +P   F    G  +L++  T 
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISRTR 213

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDL 254
           I  LP+    +L  LR+        LK++P+L KL+AL    L
Sbjct: 214 IHSLPSYGLENLKKLRARSTY---NLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +       E+   EIPS++  +      L     K L+ I +  F     L+ + +    
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQND 65

Query: 213 I-EVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
           + EV+   V S+L  L  + +     L  +       L  LQYL +  T I+ +P+    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 268 MLENLSHLSL 277
                  L +
Sbjct: 126 HSLQKVLLDI 135

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 153 NLERVSLMENDF-EEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           +LE++ + +ND  E I +++  +   L  + ++    L  I    F ++  L+ L + +T
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLA-LQYLDLEGTWIEEVPEGME 267
            I+ LP+           L ++    +  +   S   L      L L    I+E+     
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 268 MLENLSHLSL 277
               L  L+L
Sbjct: 175 NGTQLDELNL 184

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + L  N  E IPS        L  L L   K L  I E  F  +  L+ LNL   +
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EML 269
           +  +P +++ L  L  L L    +   +   S   L+ LQ L +  + I+ +     + L
Sbjct: 197 LREIP-NLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 270 ENLSHLSL 277
           ++L  ++L
Sbjct: 255 QSLVEINL 262

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            N   ++L EN  + I  N   H   L  L L  N  ++ I    F  +  L  L L   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGT-WIEEVPEGM- 266
            +  +PN     L+ L+ L LR   I + +PS    ++ +L+ LDL     +  + EG  
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 267 EMLENLSHLSL 277
           E L NL +L+L
Sbjct: 182 EGLSNLRYLNL 192

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + L  N    I          L  L +  ++ +Q I    F ++  L  +NL H +
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNN 266

Query: 213 IEVLP-NSVSDLTNLRSLLLR 232
           + +LP +  + L +L  + L 
Sbjct: 267 LTLLPHDLFTPLHHLERIHLH 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L   +   I          L  L + H  YL  +       ++ L  L++ H +
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCN 235

Query: 213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EM 268
           +  +P  +V  L  LR L L +  I   +    L +LL LQ + L G  +  V       
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 269 LENLSHLSL 277
           L  L  L++
Sbjct: 295 LNYLRVLNV 303

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            NL  + L  N  + IP  +      L+ L +  NK +  + +  F  ++ LK L +   
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN 138

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-E 267
            +  + +   S L +L  L L  C +   +P  +L+ L  L  L L    I  + +   +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 268 MLENLSHLSL 277
            L  L  L +
Sbjct: 198 RLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL+ + + +ND   I          L  L L+    L  IP     H+HGL VL L H +
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN 187

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLA-KLLALQYLDLEGTWIEEVPEGM-EML 269
           I  + +     L  L+ L +     L  +       L L  L +    +  VP      L
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 270 ENLSHLSL 277
             L  L+L
Sbjct: 248 VYLRFLNL 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
               + L +N  + +  +       L  L L  N  +  +    F ++  L+ L L    
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EM 268
           ++++P  V + L+NL  L +    I   +       L  L+ L++    +  +       
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 269 LENLSHLSL 277
           L +L  L+L
Sbjct: 151 LNSLEQLTL 159

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
             L+ + +    + +  +    +   L++L + H   L  +P     H+  L+ LNL + 
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN 258

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
            I  +  S+  +L  L+ + L    +   V       L  L+ L++ G  +  + E +  
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 268 MLENLSHLSL 277
            + NL  L L
Sbjct: 318 SVGNLETLIL 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  N+  +    +  +   L  + L +N+ L++I    FV M  L+ L + +  
Sbjct: 227 ELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR 283

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  L      +  L+ L L    +L    +  +   L+ L L+   I  +         L
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS--THHTL 341

Query: 273 SHLSL 277
            +L+L
Sbjct: 342 KNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  ND   +P  +  +   L+TL + +N  L+RI +  F     L+ L L    
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR 176

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  +  S+  + +L    + +  +     +LA  +A++ LD     I  V     +   L
Sbjct: 177 LTHVDLSL--IPSLFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGP--VNVEL 228

Query: 273 SHLSL 277
           + L L
Sbjct: 229 TILKL 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            +E ++L +   EEI +    +   +  L +  N  ++ +P   F ++  L VL L    
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND 128

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGMEML 269
           +  LP  +  +   L +L +    + +R+         +LQ L L    +  V     ++
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LI 185

Query: 270 ENLSHLSL 277
            +L H ++
Sbjct: 186 PSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           N + V+   +   ++P+ +      +  L L   + ++ I    F + H ++ L +   +
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-EM 268
           I  LP  V  ++  L  L+L    +   +P         L  L +    +E + +   + 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 269 LENLSHLSL 277
             +L +L L
Sbjct: 164 TTSLQNLQL 172

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 167 IPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV-SDLTN 225
           I SN+   C      +    + +    E   + ++  K++   ++++  LP ++      
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFE--DITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 226 LRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSL 277
           +  L L    I + +   + A    +Q L +    I  +P  + + +  L+ L L
Sbjct: 71  VELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 153 NLERVSLMENDFEEIPS-NMSPHCEILSTLLLQHNKYLQRIPECFFVHMHG-LKVLNLCH 210
            L+ + +     +  P        +I   L +  N Y+  IP   F  +      L L +
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLA--KLL-ALQYLDLEGTWIEEVPEGME 267
                +     + T L ++ L     L  +   A   +      LD+  T +  +P    
Sbjct: 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-- 223

Query: 268 MLENLSHL 275
            LE+L  L
Sbjct: 224 GLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 153 NLERVSLMEND-FEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           N+ R+ +  +   +++ S+   +   ++ + +++ + L  I       +  LK L + +T
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 212 SIEVLPN--SVSDLTNLRSLLLRWCGILKRVP--SLAKLLA-LQYLDLEGTWIEEVPEGM 266
            +++ P+   V        L +     +  +P  +   L      L L       V    
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175

Query: 267 EMLENLSHLSL 277
                L  + L
Sbjct: 176 FNGTKLDAVYL 186

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-T 211
             E   +   D + IPS          TL L     L+ IP   F ++  +  + +    
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPS----TQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDV 66

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEG--M 266
           +++ L +    +L+ +  + +R    L  +    L +L  L++L +  T ++  P+   +
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 267 EMLENLSHLSL 277
              +    L +
Sbjct: 127 YSTDIFFILEI 137

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  N  E IPS        L  L L   K L+ I E  F  +  LK LNL   +
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EML 269
           I+ +P +++ L  L  L +        +   S   L +L+ L +  + +  +     + L
Sbjct: 208 IKDMP-NLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 270 ENLSHLSL 277
            +L  L+L
Sbjct: 266 ASLVELNL 273

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            N   ++LMEN+ + I ++   H   L  L L  N  +++I    F  +  L  L L   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGT-WIEEVPEGM- 266
            + V+P+     L+ LR L LR   I + +PS    ++ +L  LDL     +E + EG  
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 267 EMLENLSHLSL 277
           E L NL +L+L
Sbjct: 193 EGLFNLKYLNL 203

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 153 NLERVSLME-NDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           +L R+ L E    E I          L  L L     ++ +P      + GL+ L +   
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSGN 228

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
               +       L++L+ L +    +   +       L +L  L+L    +  +P  +  
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 268 MLENLSHLSL 277
            L  L  L L
Sbjct: 288 PLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            LE + +  N F EI          L  L + +++ +  I    F  +  L  LNL H +
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN 277

Query: 213 IEVLP-NSVSDLTNLRSLLLR 232
           +  LP +  + L  L  L L 
Sbjct: 278 LSSLPHDLFTPLRYLVELHLH 298

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           + E          ++P ++  +   ++ L L HN+ L+R+P   F     L  L++   +
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT 60

Query: 213 IEVL-PNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM-EML 269
           I  L P     L  L+ L L+   + +    + A    L  L L    I+++        
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 270 ENLSHLSL 277
           +NL  L L
Sbjct: 121 KNLITLDL 128

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  ++L +N   +I S+       L  L L  N+  Q +    +  +  +  + L +  
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 213 IEVL-PNSVSDLTNLRSLLLRWC---GILKRVPSLAKLLALQYLDLEGTWIEEVPEG-ME 267
              L  NS + + +L+ L+LR      +         L  L  LDL    I  + +  +E
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 268 MLENLSHLSL 277
            LE L  L L
Sbjct: 502 GLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ ++L  N+  ++       C  L+ L L  N  +Q+I    FV    L  L+L H  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG 132

Query: 213 IEVL-PNSVSDLTNLRSLLLRWC---GILKRVPSLAKLLALQYLDLEGTWIEEVPEGM-E 267
           +      +   L NL+ LLL       +      +    +L+ L+L    I+E   G   
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 268 MLENLSHLSL 277
            +  L  L L
Sbjct: 193 AIGRLFGLFL 202

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-- 210
           +  + S+      +I        + L  L ++ N  +  I    F  +  LK L+L +  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF 364

Query: 211 TSIEVLPNSV---SDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM 266
           TS+  L N        + L  L L    I K    + + L  L+ LDL    I +   G 
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 267 E--MLENLSHLSL 277
           E   LEN+  + L
Sbjct: 425 EWRGLENIFEIYL 437

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNK-------YLQRIPECFFVHMHGLKV 205
           NL  + L  N+   I  +M    E L  L LQHN             P  F   +  L +
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 206 LNLCHTSIEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV 262
           LNL     + +P  V  DL  L+ + L    +   +P       ++L+ L+L+   I  V
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 263 PEGM--EMLENLSHLSL 277
            + +      NL+ L +
Sbjct: 600 EKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCH 210
           +L+++ L  N  +E           L  L L + +    + E  C  +    ++ L+L +
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 211 TSIEVLPNSV---SDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM 266
           + +    N+       TNL  L L +  +      S A L  L+Y  LE   I+ +    
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 267 -EMLENLSHLSL 277
              L N+ +L+L
Sbjct: 292 LHGLFNVRYLNL 303

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + LM N  ++I +N     + L TL L HN  L        V +  L+ L L +  
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNK 156

Query: 213 IEVLPN---SVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWI-EEVPEGME 267
           I+ L +    +   ++L+ L L    I +  P     +  L  L L    +   + E + 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 268 MLENLSHL 275
           +    + +
Sbjct: 217 LELANTSI 224

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY--------LQRIPECFFVHMHGLK 204
            LE   L  N+ + + S+       +  L L+ +          L +I +  F  +  L+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 205 VLNLCHTSIEVLPNSV-SDLTNLRSLLLRWCGI-LKRVPSLA----KLLALQYLDLEGTW 258
            LN+    I  + +++ + L NL+ L L      L+ + +          L  L+L    
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 259 IEEVPEGM-EMLENLSHLSL 277
           I ++       L +L  L L
Sbjct: 393 ISKIESDAFSWLGHLEVLDL 412

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L  ++L  N F+EIP  +      L  + L  N  L  +P   F +   LK LNL    
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNL 595

Query: 213 IEVLPNSV--SDLTNLRSLLLR 232
           I  +   V      NL  L +R
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 152 ENLERVSLMENDFEEIPSNMSP--------HCEILSTLLLQHNKYLQRIPECFFVHMHGL 203
           E LE + L  N+   +  + +P            L  L L+ N     IP   F  +  L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL 562

Query: 204 KVLNLCHTSIEVLPNSV-SDLTNLRSLLLRWCGILKRVPSL--AKLLALQYLDLEG 256
           K+++L   ++  LP SV ++  +L+SL L+   I      +       L  LD+  
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  N+  +    +  +   L  + L +N+ L++I    FV M  L+ L + +  
Sbjct: 233 ELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR 289

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  L      +  L+ L L    +L    +  +   L+ L L+   I  +         L
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS--THHTL 347

Query: 273 SHLSL 277
            +L+L
Sbjct: 348 KNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  ND   +P  +  +   L+TL + +N  L+RI +  F     L+ L L    
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR 182

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  +  S+  + +L    + +  +     +LA  +A++ LD     I  V     +   L
Sbjct: 183 LTHVDLSL--IPSLFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGP--VNVEL 234

Query: 273 SHLSL 277
           + L L
Sbjct: 235 TILKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            +E ++L +   EEI +    +   +  L +  N  ++ +P   F ++  L VL L    
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND 134

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGMEML 269
           +  LP  +  +   L +L +    + +R+         +LQ L L    +  V     ++
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LI 191

Query: 270 ENLSHLSL 277
            +L H ++
Sbjct: 192 PSLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           N + V+   +   ++P+ +      +  L L   + ++ I    F + H ++ L +   +
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-EM 268
           I  LP  V  ++  L  L+L    +   +P         L  L +    +E + +   + 
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 269 LENLSHLSL 277
             +L +L L
Sbjct: 170 TTSLQNLQL 178

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 162 NDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECF----FVHMHGLKVLNLCHTSIEVLP 217
           N     P        +    +        +  + +     + ++  K++   ++++  LP
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 218 NSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EMLENLS 273
            ++      +  L L    I + +   + A    +Q L +    I  +P  + + +  L+
Sbjct: 68  AALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 274 HLSL 277
            L L
Sbjct: 127 VLVL 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           ++E +    N+   +  +          + L +NK +  + +        ++ L+L    
Sbjct: 100 SIETLHAANNNISRVSCSRGQG---KKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 213 IEVLPNS--VSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
           I+ +  +   +    L  L L++  I   V        L+ LDL    +  +    +   
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 271 NLSHLSL 277
            ++ +SL
Sbjct: 215 GVTWISL 221

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIP-ECFFVHMHGLKVLNLCH 210
           +  + + L  N    +          +  L L+ N+ +  +           L+ LNL +
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQY 178

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
             I  +   V     L++L L    +    P       + ++ L    +  + + +   +
Sbjct: 179 NFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 271 NLSHLSL 277
           NL H  L
Sbjct: 238 NLEHFDL 244

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
             +   + ++  ++  +++      +  L L  N  L +I          L++LNL    
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV 69

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +      +  L+ LR+L L    +      L    +++ L      I  V       +  
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSC--SRGQGK 122

Query: 273 SHLSL 277
            ++ L
Sbjct: 123 KNIYL 127

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 166 EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLT 224
           EI  N +          +  +  L++           +K L+L    +  +    ++  T
Sbjct: 4   EIKQNGN----RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 225 NLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
            L  L L    +      L  L  L+ LDL   +++E+        ++  L  
Sbjct: 59  KLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 139 LRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFV 198
           +  + F       + LE ++L  N   ++   +      L TL L  NK L  +   F  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK-LAFMGPEFQ- 211

Query: 199 HMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW----CGILKRVPSLAKLLALQYLDL 254
              G+  ++L +  + ++  ++    NL    LR     CG L+     +K   +Q +  
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAK 269

Query: 255 EG-TWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRL 291
           +    +    E    +  L H   +   +  A  +DRL
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L       I  +       L TL+L  N  L  + E        LK L    T 
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG 116

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILK-RVPSLAKLLALQYLDLEGTWIEEVPEG-MEML 269
           I  +      +   L SL L    I   ++P       L+ LD +   I  + +  M  L
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 270 ENLSHLSL 277
           +  ++LSL
Sbjct: 177 QQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-- 210
            L+++ L  N FE +    + +   L+ L ++ N     +      ++  L+ L+L H  
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 211 -TSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM-- 266
             + +     + +L++L+SL L +   L     +  +   L+ LDL  T ++        
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 267 EMLENLSHLSL 277
           + L  L  L+L
Sbjct: 422 QNLHLLKVLNL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 9/125 (7%)

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
            +       EIP  +         L    N  L  I    F  +  L  L+L    I  +
Sbjct: 17  YNCENLGLNEIPGTLPNS---TECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 217 PNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EMLENL 272
                     L +L+L     L  +   +L+   AL++L    T I  +        + L
Sbjct: 73  HEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 273 SHLSL 277
             L L
Sbjct: 132 ESLYL 136

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 6/130 (4%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            + E +    N    I +        L+ L L   + +  I E  F   H L  L L   
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN 91

Query: 212 SIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-E 267
            +  +   ++S    L+ L     GI   +    L     L+ L L    I  +      
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 268 MLENLSHLSL 277
             E L  L  
Sbjct: 151 PTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILS--TLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
           +L   +  + D E+I   +      +S  ++ LQ +     I    F    GL+ L+L  
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTA 287

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWI--EEVPEGM 266
           T +  LP+ +  L+ L+ L+L      + +   S +   +L +L ++G     E     +
Sbjct: 288 THLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 267 EMLENLSHLSL 277
           E LENL  L L
Sbjct: 347 ENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 33/155 (21%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNK------------------------Y 188
           +L+ ++L  N+   + +     C  L  L L   +                         
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 189 LQRIPECFFVHMHGLKVLNLCHTSI----EVLPNSVSDLTNLRSLLLRWCGILKRVP--S 242
           L    E  F  +  L+ LNL             NS+  L  L  L+L +C +   +   +
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHA 495

Query: 243 LAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
              L  + ++DL    +       E L +L  + L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSI--EALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 33/157 (21%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKV--LNLCH 210
            LE + L  N    I        E L  L  Q+N  +  + +     +       LNL  
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNG 188

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVP---------SLAKL--------------- 246
             I  +     D    +SL       L  +          SL                  
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 247 -----LALQYLDLEGTWIEEVPEGM-EMLENLSHLSL 277
                ++++ ++L+  +   +          L  L L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 51/360 (14%), Positives = 101/360 (28%), Gaps = 66/360 (18%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + L  N    +        + L  L       +  I      +   L+ L L    
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH 140

Query: 213 IEVLPNSV-SDLTNLRSLLLRWC---GILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEM 268
           I  +          L+ L  +      + K   S  +      L+L G  I  +  G   
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 269 L-----ENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL 323
                  N       +   +  + S     ++G F  ++D +I   +      +     +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI-SPAVFEGLCEMSVESI 259

Query: 324 SASGKR---------GFLEVDKSVRLFACKICETEETIVLPEDVQYLEM----FGVDDVA 370
           +                    + + L A  + E    +V    ++ L +    F      
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 371 SLNDVLPREQGLNL----FSLRLLPA----LQNLEVLAVGYCFLIEEIVAVEDEETEKEL 422
           S ++  P    L++      L L       L+NL  L + +  +              + 
Sbjct: 320 SASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI-----------ETSDC 367

Query: 423 ATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVY---NCPKLKRLSLS 479
               + N   L  L+ L+L                  N    ++      CP+L+ L L+
Sbjct: 368 CNLQLRN---LSHLQSLNLSY----------------NEPLSLKTEAFKECPQLELLDLA 408

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSP---HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209
            L+ ++L  N F +     +        L  L+L     L  I +  F  +  +  ++L 
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLS 508

Query: 210 HTSIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS-LAKLLALQYLDLEG 256
           H  +        S L  +  L L    I   +PS L  L   + ++L  
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 11/135 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  N  + I          L  L L HN+ ++ I       +  L+ L+L +  
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK 252

Query: 213 IEVLPNSVSDLTNLRSLLLRW-------CGILKRVPSLAKLLALQYLDLEGTWIE--EVP 263
           +  +P  + DL  L+ + L               V    K      + L    +   EV 
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 264 EGM-EMLENLSHLSL 277
                 + +   +  
Sbjct: 313 PATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L  V   +   + +P  +SP   +L    LQ+N  +  + +  F  +  L  L L +  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLD---LQNND-ISELRKDDFKGLQHLYALVLVNNK 89

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGM-EMLE 270
           I  +     S L  L+ L +     L  +P      +L  L +    I +VP+G+   L 
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 271 NLSHLSL 277
           N++ + +
Sbjct: 148 NMNCIEM 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+++ + +N   EIP N+      L  L +  N+ ++++P+  F  +  +  + +    
Sbjct: 103 KLQKLYISKNHLVEIPPNLPSS---LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 213 IE--VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGM-EML 269
           +E         D   L  L +     L  +P       L  L L+   I+ +        
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL-PETLNELHLDHNKIQAIELEDLLRY 216

Query: 270 ENLSHLSL 277
             L  L L
Sbjct: 217 SKLYRLGL 224

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +   + L  ND  E+  +     + L  L+L +NK + +I E  F  +  L+ L +    
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH 113

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
           +  +P ++   ++L  L +    I ++VP    + L  +  +++ G  +E         +
Sbjct: 114 LVEIPPNL--PSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 271 NLSHLSLFMA 280
            L    L ++
Sbjct: 171 GLKLNYLRIS 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            + + + L  N    + S        L  L L   + +Q I +  +  +  L  L L   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGMEM 268
            I+ L     S L++L+ L+      L  + +  +  L  L+ L++    I+        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 269 --LENLSHLSL 277
             L NL HL L
Sbjct: 146 SNLTNLEHLDL 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPE-CFFVHMHGLKVLNLCHT 211
           +L+ + L  N    + SN     E L  L  QH+  L+++ E   F+ +  L  L++ HT
Sbjct: 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 431

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
              V  N + + L++L  L +      +        +L  L +LDL    +E++      
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 268 MLENLSHLSL 277
            L +L  L++
Sbjct: 492 SLSSLQVLNM 501

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 153 NLERVSLMENDFEEIPS-NMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            LE +    ++ +++   ++      L  L + H    +      F  +  L+VL +   
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN 455

Query: 212 SIE--VLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM- 266
           S +   LP+  ++L NL  L L  C + +++   +   L +LQ L++    ++ VP+G+ 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 267 EMLENLSHLSL 277
           + L +L  + L
Sbjct: 515 DRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + L   + + I          LSTL+L  N  +Q +    F  +  L+ L    T+
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 111

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDLEGTWIEEVPEGMEML 269
           +  L N     L  L+ L +    I   K     + L  L++LDL    I+ +      L
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDL 169

Query: 270 ENLSHLSL 277
             L  + L
Sbjct: 170 RVLHQMPL 177

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
              ME +F +IP N+         L L  N  L+ +    F     L+VL+L    I+ +
Sbjct: 12  YQCMELNFYKIPDNLPFS---TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 217 PNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-EMLENL 272
            +     L++L +L+L     ++ +     + L +LQ L    T +  +       L+ L
Sbjct: 68  EDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 273 SHLSL 277
             L++
Sbjct: 127 KELNV 131

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-- 210
             + + L+   F + P+        L  L    NK          V +  L+ L+L    
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK-GGNAFS--EVDLPSLEFLDLSRNG 358

Query: 211 -TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG--ME 267
            +       S    T+L+ L L + G++    +   L  L++LD + + ++++ E     
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 268 MLENLSHLSL 277
            L NL +L +
Sbjct: 419 SLRNLIYLDI 428

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + +         + +      L  L +  N + +      F  +  L  L+L    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEG 256
           +E L  +  + L++L+ L +     LK VP     +L +LQ + L  
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 21/146 (14%)

Query: 153 NLERVSLMEND-FEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            +E   L   D + +   ++      +S+  L      +     +      L+++N    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 212 SIEVLP-----------------NSVSDLTNLRSLLLRWCGILK---RVPSLAKLLALQY 251
               L                   S  DL +L  L L   G+        S     +L+Y
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 252 LDLEGTWIEEVPEGMEMLENLSHLSL 277
           LDL    +  +      LE L HL  
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDF 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 18/140 (12%)

Query: 153 NLERVSLMENDFEEIPSNMSP-------HCEILSTLLLQHNKYLQRIPECFFV-HMHGLK 204
            L  ++LM N   EIP N          +  +L+++ L+ NK L ++ + F    +  L 
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLV 516

Query: 205 VLNLCHTSIEVLPNSVSDLTNLRSLLLR------WCGILKRVP-SLAKLLALQYLDLEGT 257
            ++L + S    P    + + L+   +R          L+  P  +    +L  L +   
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 258 WIEEVPEGMEMLENLSHLSL 277
            I +V E  ++  N+S L +
Sbjct: 577 DIRKVNE--KITPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH-MHGLKVLNLCH- 210
            L  ++L  N   EIP+N     E +  L   HNK L+ IP  F    +  +  ++  + 
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 211 -------TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPS-LAKLLALQYLDLEG------ 256
                   + + L  +     N+ S+ L    I K      +    L  ++L G      
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 257 --TWIEEVPEGMEMLENLSHLSL 277
               +++  E  +    L+ + L
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 12/138 (8%), Positives = 38/138 (27%), Gaps = 7/138 (5%)

Query: 141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHM 200
                          ++  + N+   +   +      L    + ++        C     
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVM-RLTKLRQFYMGNSP-FVAENICEAWEN 229

Query: 201 HGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWI 259
              +         +       +L +L  + +  C  L ++P  L  L  +Q +++     
Sbjct: 230 ENSEYAQQ----YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 260 EEVPEGMEMLENLSHLSL 277
               +  +  + L+   +
Sbjct: 286 ISGEQLKDDWQALADAPV 303

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 14/149 (9%)

Query: 141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMS-PHCEILSTLLLQHNKYLQRIPECFFVH 199
             +   +    E ++ + +  N+ +  P   S    + L  L   +N+ L+     F   
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFG-S 351

Query: 200 MHGLKVLNLCHTSIEVLPNSV-SDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDL-- 254
              L  LNL +  I  +P +       + +L      +  +  +     +  +  +D   
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 255 ------EGTWIEEVPEGMEMLENLSHLSL 277
                 +G   + +        N+S ++L
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 17/144 (11%), Positives = 45/144 (31%), Gaps = 8/144 (5%)

Query: 138 GLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEI--LSTLLLQHNKYLQRIPEC 195
               L  P       + E+   M   +++   +  P  +   L    +  +   + I + 
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 196 FFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDL 254
             + +     +     +I  +  +V  LT LR   +     +        +    +Y   
Sbjct: 179 SRITLK-DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 255 EGTWIEEVPEGMEMLENLSHLSLF 278
             T         + L++L+ + ++
Sbjct: 238 YKT----EDLKWDNLKDLTDVEVY 257

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 17/137 (12%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 153 NLERVSLMENDF-EEIPSNMSPHCEILSTLLLQHNKYLQRIPECF--------FVHMHGL 203
           +L  V +       ++P+ +      +  + +  N+      +                +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKI 307

Query: 204 KVLNLCHTSIEVL--PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEE 261
           +++ + + +++      S+  +  L  L   +  +  ++P+    + L  L+L    I E
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 262 VPEGM-EMLENLSHLSL 277
           +P       E + +LS 
Sbjct: 368 IPANFCGFTEQVENLSF 384

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L  + L  N   ++ +        L+ L L  N  +  +      +   L+ L+L +  
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251

Query: 213 IEVLPNSVSDLTNLRSLLLRW-------CGILKRVPSLAKLLALQYLDLEGTWIE--EVP 263
           +  +P  ++D   ++ + L                    K  +   + L    ++  E+ 
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 264 EGM-EMLENLSHLSL 277
                 +   + + L
Sbjct: 312 PSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-- 210
            LER+ L +N  +E+P  M      L  L +  N+ + ++ +  F  ++ + V+ L    
Sbjct: 101 KLERLYLSKNQLKELPEKMPKT---LQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP 156

Query: 211 -TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGM-EM 268
             S  +   +   +  L  + +    I   +P      +L  L L+G  I +V     + 
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL-PPSLTELHLDGNKITKVDAASLKG 214

Query: 269 LENLSHLSL 277
           L NL+ L L
Sbjct: 215 LNNLAKLGL 223

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 28/125 (22%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L  V   +   E++P ++ P   +L    LQ+NK +  I +  F ++  L  L L +  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLD---LQNNK-ITEIKDGDFKNLKNLHTLILINNK 87

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  +                           A L+ L+ L L    ++E+PE   M + L
Sbjct: 88  ISKISPGA----------------------FAPLVKLERLYLSKNQLKELPEK--MPKTL 123

Query: 273 SHLSL 277
             L +
Sbjct: 124 QELRV 128

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + +   + +     +      L+TL +  N +        F +   L  L+L    
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEM 268
           +E +   V   L  L+ L +    +   +      +L +L  LD     IE         
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 269 LENLSHLSL 277
            ++L+  +L
Sbjct: 544 PKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            + + + L  N  + + S    +   L  L L   + ++ I +  +  +H L  L L   
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN 90

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILK-RVPSLAKLLALQYLDLEGTWIEEVPEGMEM- 268
            I+       S LT+L +L+     +       + +L+ L+ L++   +I          
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 269 -LENLSHLSL 277
            L NL H+ L
Sbjct: 151 NLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHT 211
           +L  + L  N    + +N     E L  L  QH+  L+R+ E   F+ +  L  L++ +T
Sbjct: 377 SLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYT 434

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
           + ++  + +   LT+L +L +          S   A    L +LDL    +E++  G+ +
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 268 MLENLSHLSL 277
            L  L  L++
Sbjct: 495 TLHRLQLLNM 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 64/340 (18%), Positives = 110/340 (32%), Gaps = 51/340 (15%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + L   + E I          LS L+L  N  +Q      F  +  L+ L    T 
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK 115

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDLEGTWIEEVPEGMEML 269
           +  L +     L  L+ L +    I   K     + L  L ++DL   +I+ +      L
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV--NDL 173

Query: 270 ENLSHLSLFMAAEEAARLSDRLDTFVGYFSTLNDFNI-YVKSTDGRGSKNYCLLLSASGK 328
           + L             +++  LD        ++   I +++    +G K + L L  +  
Sbjct: 174 QFLRENP---------QVNLSLD--------MSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 329 RGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPRE---QGLNLF 385
              +       L    +           D + LE+F    +  L DV   E      N F
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFK--DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 386 SLRL--LPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATN----TIINTVTLPRLKKL 439
           S  +     L N+  +++     I+ +  V      + L+          T+ LP LK L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333

Query: 440 HLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLS 479
            L          + N   +            P L  L LS
Sbjct: 334 TL----------TMNKGSISFKKV-----ALPSLSYLDLS 358

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 11/130 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
             + +S++    ++ P+   P    L +L L  NK      +   V +  L  L+L   +
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNK-GSISFK--KVALPSLSYLDLSRNA 361

Query: 213 IEVLPNSV---SDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG--ME 267
           +              +LR L L + G +    +   L  LQ+LD + + ++ V E     
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 268 MLENLSHLSL 277
            LE L +L +
Sbjct: 422 SLEKLLYLDI 431

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
             ER+ L  N    + ++  P  E L  L L        I +  F ++  L++L+L  + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGTWIEEVPEGMEM 268
           I  L       L +L  L L +CG+   V        L AL  LDL    I  +      
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 269 --LENLSHLSL 277
             L +L  +  
Sbjct: 145 GKLNSLKSIDF 155

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           ++  + L       + S +    + L  L L +NK + +I +  F  +  L+VLNL +  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL 325

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
           +  L +S    L  +  + L+   I      +   L  LQ LDL    +  +      + 
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIP 381

Query: 271 NLSHLSL 277
           ++  + L
Sbjct: 382 SIPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSP-HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
               + L EN  E +           L  L+L  N++     +        L+ L L   
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 212 SIEVLPNSV------SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVP 263
            +++   +         L++L+ L L    +   +P    + L AL+ L L    +  + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYL-NSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 264 EGMEMLENLSHLSL 277
               +  NL  L +
Sbjct: 521 HND-LPANLEILDI 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 153 NLERVSLMENDFEE--IPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
           +L  + L      +  +      + + L+ L L  N+         F  ++ LK ++   
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWC------------GILKRVPSLAKLLALQYLDLEGTW 258
             I ++     +L  L+   L +                 +  +  + + L+ LD+ G  
Sbjct: 158 NQIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 259 IEEVPEGM 266
                 G 
Sbjct: 216 WTVDITGN 223

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPH-CEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
               + L  N+F  + +         L  +   +NK +  I E  F    G+  + L   
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-E 267
            +E + + +   L +L++L+LR    +  V + +   L +++ L L    I  V  G  +
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 268 MLENLSHLSLF 278
            L +LS L+L 
Sbjct: 151 TLHSLSTLNLL 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L+ + L  N    + SN     E L  L  QH+   Q      F+ +  L  L++ HT 
Sbjct: 374 SLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EM 268
             V  N + + L++L  L +      +        +L  L +LDL    +E++       
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 269 LENLSHLSL 277
           L +L  L++
Sbjct: 493 LSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 138 GLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
            L   K P       + + + L  N    + S        L  L L   + +Q I +  +
Sbjct: 16  ELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAY 72

Query: 198 VHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLE 255
             +  L  L L    I+ L   + S L++L+ L+     +       +  L  L+ L++ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 256 GTWIEEVPEGMEM--LENLSHLSL 277
              I+          L NL HL L
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + +         + +      L  L +  N + +      F  +  L  L+L    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 213 I-EVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG--MEM 268
           + ++ P + + L++L+ L +               L +LQ LD     I    +      
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 269 LENLSHLSL 277
             +L+ L+L
Sbjct: 542 PSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNL---C 209
             + + L+   F + P+      + L+    +             V +  L+ L+L    
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNG 358

Query: 210 HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEML 269
            +       S    T+L+ L L + G++    +   L  L++LD + + ++++ E   + 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVF 417

Query: 270 ENLSHL 275
            +L +L
Sbjct: 418 LSLRNL 423

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           N+   SL+    E +      +      L L + K   + P      +  L   +    +
Sbjct: 283 NVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRV---PSLAKLLALQYLDLEGTWIEEVPEGMEML 269
                 S  DL +L  L L   G+  +     S     +L+YLDL    +  +      L
Sbjct: 340 ----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 270 ENLSHLSL 277
           E L HL  
Sbjct: 396 EQLEHLDF 403

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHT 211
           +L+++  +E +   + +    H + L  L + HN  +Q      +F ++  L+ L+L   
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 212 SIEVL-PNSVSDLTNLR----SLLLRWCGILKRVPSLAKLLALQYLDLEGTWI--EEVPE 264
            I+ +    +  L  +     SL L    +    P   K + L  L L   +     +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 265 GMEMLENLSHLSL 277
            ++ L  L    L
Sbjct: 220 CIQGLAGLEVHRL 232

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 11/136 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            LE + +  +D +          + +S L+L   +    + E F      ++ L L  T 
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233

Query: 213 IEVLP---------NSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVP 263
           ++            NS+      R++ +    + + +  L ++  L  L+     ++ VP
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293

Query: 264 EGM-EMLENLSHLSLF 278
           +G+ + L +L  + L 
Sbjct: 294 DGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 30/154 (19%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            ++ + L  N    I ++    C  L  L+L  N  +  I E  F  +  L+ L+L +  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY 111

Query: 213 IEVLPNSV--------------------------SDLTNLRSLLLRWCGILKRVPS--LA 244
           +  L +S                           S LT L+ L +       ++     A
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 245 KLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSL 277
            L  L+ L+++ + ++       + ++N+SHL L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV 215
                      IPS ++   + L    L +N+ +  I          L+ L L    I  
Sbjct: 35  ICKGSSGSLNSIPSGLTEAVKSLD---LSNNR-ITYISNSDLQRCVNLQALVLTSNGINT 90

Query: 216 LPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM--EMLE 270
           +     S L +L  L L +   L  + S     L +L +L+L G   + + E      L 
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149

Query: 271 NLSHLSL 277
            L  L +
Sbjct: 150 KLQILRV 156

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 12/136 (8%)

Query: 153 NLERVSLMEND-FEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            L+ + +   D F +I          L  L +  +  LQ         +  +  L L   
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMK 208

Query: 212 SIEVLPNSVSD-LTNLRSLLLRWCGI----LKRVP-----SLAKLLALQYLDLEGTWIEE 261
              +L     D  +++  L LR   +       +      SL K    + + +    + +
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 262 VPEGMEMLENLSHLSL 277
           V + +  +  L  L  
Sbjct: 269 VMKLLNQISGLLELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 16/115 (13%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 153 NLERVSLMENDFEEI-PSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           +L  ++L+ N ++ +  +++  H   L  L + +     +I    F  +  L+ L +  +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVP 263
            ++         + N+  L+L        +  +      +++ L+L  T ++   
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFH 238

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNK-------YLQRIPECFFVHMHGLKV 205
           N+  + L       +          +  L L+           L        +     + 
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 206 LNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEG 256
           + +   S+  +   ++ ++ L  L       LK VP     +L +LQ + L  
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHT 310

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
                  F  IPS ++     + +L L  NK +  I          L+VL L  + I  +
Sbjct: 10  CDGRSRSFTSIPSGLTAA---MKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 217 PNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGMEM--LEN 271
                  L +L  L L     L  + S     L +L+YL+L G   + +        L N
Sbjct: 66  EGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 272 LSHLSL 277
           L  L +
Sbjct: 125 LQTLRI 130

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 6/131 (4%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
             ++ + L  N    I       C  L  L+L+ ++ +  I    F  +  L+ L+L   
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN 84

Query: 212 SIEVLPNSV-SDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDLEGT-WIEEVPEGM- 266
            +  L +S    L++L+ L L       L        L  LQ L +       E+     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 267 EMLENLSHLSL 277
             L +L+ L +
Sbjct: 145 AGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNK--YLQRIPECFFVHMHGLKVLNLCH 210
            ++R+++  +    +P + S H + L  L L  N                  L+ L L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 211 ---TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGME 267
               S++     +  L NL SL +          S      +++L+L  T I  V     
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-- 428

Query: 268 MLENLSHLSL 277
           + + L  L +
Sbjct: 429 IPQTLEVLDV 438

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 16/129 (12%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLL---LQHNKYLQRIPECFFVHMHGLKVLNLC 209
           NL  + +  N F  +P      C+    +    L     ++ +  C       L+VL++ 
Sbjct: 388 NLTSLDISRNTFHPMP----DSCQWPEKMRFLNLSSTG-IRVVKTCIP---QTLEVLDVS 439

Query: 210 HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG-MEM 268
           + +++        L  L+ L +    + K +P  +    L  + +    ++ VP+G  + 
Sbjct: 440 NNNLDSFS---LFLPRLQELYISRNKL-KTLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 269 LENLSHLSL 277
           L +L  + L
Sbjct: 496 LTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHT 211
           +LE + L +N    + S+       L  L L  N   Q +     F ++  L+ L + + 
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 212 -SIEVLPNSV-SDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM-E 267
            +   +     + LT+L  L ++   +      SL  +  + +L L  +    + E   +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 268 MLENLSHLSLF 278
           +L ++ +L L 
Sbjct: 194 ILSSVRYLELR 204

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L  + +         S        +  L L  ++    + E F   +  ++ L L  T+
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN 207

Query: 213 IEVLPNSVSDLTNLRSLL------------LRWCGILKRVPSLAKLLALQYLDLEGTWIE 260
           +     S   +  + S +              +  +LK +  + +L  +++ D     + 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 261 EVPEG-MEMLENLSHLSLF 278
           +      +++  L  +   
Sbjct: 268 DFNPSESDVVSELGKVETV 286

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           E +  + L +N  + IP       + L  + L +N+ +  +    F  +  L  L L   
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN 90

Query: 212 SIEVLPNSVSD-LTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-E 267
            I  LP S+ + L +L+ LLL     +  +   A   L  L  L L    ++ + +G   
Sbjct: 91  KITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 268 MLENLSHLSLF 278
            L  +  + L 
Sbjct: 150 PLRAIQTMHLA 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +   + L EN               L+ L L   + L ++       +  L  L+L H  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHNQ 88

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-EML 269
           ++ LP     L  L  L + +  +   +P   L  L  LQ L L+G  ++ +P G+    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 270 ENLSHLSL 277
             L  LSL
Sbjct: 148 PKLEKLSL 155

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L  N  + +P  +      L+ L +  N+ L  +P      +  L+ L L    
Sbjct: 78  VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE 135

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGMEML 269
           ++ LP  + +    L  L L     L  +P+  L  L  L  L L+   +  +P+G    
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

Query: 270 ENLSHLSLF 278
             L    L 
Sbjct: 195 HLLPFAFLH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + L  N+ + +P  +      L  L L +N  L  +P      +  L  L L   S
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS 183

Query: 213 IEVLPNSVSDLTNLRSLLLR---W---CGIL 237
           +  +P        L    L    W   C IL
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NLE + + +N  + +P  +      L+ L L  N+ L+ +P   F  +  L  L+L +  
Sbjct: 86  NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 213 IEVLPNSVSD-LTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-EM 268
           ++ LP  V D LT+L+ L L +   LKRVP  A  KL  L+ L L+   ++ VPEG  + 
Sbjct: 145 LQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 269 LENLSHLSLF 278
           LE L  L L 
Sbjct: 204 LEKLKMLQLQ 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L +N  + +P+ +    + L TL +  NK LQ +P   F  +  L  L L    
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ 120

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-EM 268
           ++ LP  V   LT L  L L +   L+ +P     KL +L+ L L    ++ VPEG  + 
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 269 LENLSHLSLF 278
           L  L  L L 
Sbjct: 180 LTELKTLKLD 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            N   V         IPSN+    + L    LQ NK L  +P   F  +  L++L L   
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLD---LQSNK-LSSLPSKAFHRLTKLRLLYLNDN 71

Query: 212 SIEVLPNSVSD-LTNLRSLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEVPEGM-E 267
            ++ LP  +   L NL +L +     L+ +P     +L+ L  L L+   ++ +P  + +
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 268 MLENLSHLSL 277
            L  L++LSL
Sbjct: 131 SLTKLTYLSL 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 70/517 (13%), Positives = 138/517 (26%), Gaps = 181/517 (35%)

Query: 73  YHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSPL 132
           +H +  E  +  + Y  +     +  V         +  C  + D+ + +   ++ +   
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFV--------DNFDCKDVQDMPKSI---LSKEEID 52

Query: 133 FMVTAG------LRL---LKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLL 183
            ++ +       LRL   L    E+  ++ +E   ++  +++ + S +       S +  
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 184 QHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVS---DLTNLRSLLLRW------- 233
            + +   R                L + +      +VS       LR  LL         
Sbjct: 111 MYIEQRDR----------------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 234 ------CGILKRVPSLAKLLALQYLDLEGT------WI----EEVPEG-MEMLENLSHLS 276
                  G  K    +A L       ++        W+       PE  +EML+ L +  
Sbjct: 155 IDGVLGSG--KTW--VA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 277 LFMAAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVD- 335
                      + R D        ++     ++           LL S   +   L +  
Sbjct: 210 -------DPNWTSRSDHSSNIKLRIHSIQAELRR----------LLKSKPYENCLLVLLN 252

Query: 336 ----KSVRLFA--CKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRL 389
               K+   F   CKI      ++     Q      V D                     
Sbjct: 253 VQNAKAWNAFNLSCKI------LLTTRFKQ------VTDF-------------------- 280

Query: 390 LPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKK----LHL---- 441
                 L      +  L    + +  +E +  L          LPR         L    
Sbjct: 281 ------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 442 EDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKR-LSLSLPLLDNGQPS----------- 489
           E +R+              +    +  NC KL   +  SL +L+   P+           
Sbjct: 335 ESIRDGL-----------ATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSV 380

Query: 490 -------PPPALEVIEIKKELWESLEWDQPNAKDVLN 519
                  P   L +      +W  +         V+N
Sbjct: 381 FPPSAHIPTILLSL------IWFDVIKSDV--MVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 76/259 (29%)

Query: 19  EECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKD 78
           E     P  +  +A S+   + +  W N  +    +L ++          +E S + L+ 
Sbjct: 321 EVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTI----------IESSLNVLEP 368

Query: 79  EKLQQCFLYCA------------LG-----------HTILNRLVNCCLLESAKDGSCVKM 115
            + ++ F   +            L              ++N+L    L+E     S + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 116 HDLIRDMALRITSKSPL--FMVTAGLRLLKFPGEQE--------W----------EENLE 155
             +  ++ +++ ++  L   +V        F  +          +           E+ E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 156 RVSLMEN---DFE----EIPSNMSPHCEILSTL--LLQHNKYLQRI------PECF---- 196
           R++L      DF     +I  + +      S L  L Q   Y   I       E      
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 197 --FVHMHGLKVLNLCHTSI 213
             F+      ++   +T +
Sbjct: 549 LDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 62/291 (21%)

Query: 9   LNKEIINEVVEECGCLPLAI--VTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVF 66
           +  ++      +C  +   I  + +    S E  +   Q  L ++     S +D  + + 
Sbjct: 166 VALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 67  GRLEFSYHRLK----DEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLI--R 120
            R+      L+     +  + C L       +L  + N      A + SC K+  L+  R
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLL-------VLLNVQNAKAWN-AFNLSC-KI--LLTTR 273

Query: 121 DMAL------RITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNM--- 171
              +        T+   L   +  L         E +  L +   ++   +++P  +   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKY--LDCRPQDLPREVLTT 325

Query: 172 SP-HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230
           +P    I++  +              + H++  K+  +  +S+ VL     +    R + 
Sbjct: 326 NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVL-----EPAEYRKMF 375

Query: 231 LRWCGILK---RVPSLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSL 277
            R   +      +P+   LL+L        W + +    M ++  L   SL
Sbjct: 376 DR-LSVFPPSAHIPT--ILLSL-------IWFDVIKSDVMVVVNKLHKYSL 416

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 77/479 (16%), Positives = 155/479 (32%), Gaps = 108/479 (22%)

Query: 38  EEEIYEWQNALNELRGRLRSLNDVDTKV-------FGRLEFSYHRLKDEKLQQCF----L 86
            +   + + AL ELR            V        G+   +       K+Q        
Sbjct: 134 LQPYLKLRQALLELR--------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 87  YCALGH-----TILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITS-KSPLFMVTAGLR 140
           +  L +     T+L  L          D +     D   ++ LRI S ++ L       R
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAEL------RR 236

Query: 141 LLKFPGEQEWEENLERVSLMENDF--EEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFV 198
           LLK        +  E   L+  +    +  +  +  C+IL T          R  +    
Sbjct: 237 LLK-------SKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---------TRFKQVTDF 280

Query: 199 HMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGI-LKRVPSLAKLLALQYLDLEGT 257
               L      H S++    +++    ++SLLL++     + +P        + L +   
Sbjct: 281 ----LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA- 334

Query: 258 WIEEVPEGMEMLENLSHLSLFMAAEEAARLS-DRLDT--FVGYFSTLNDFNIYVKSTDGR 314
             E + +G+   +N  H++           S + L+   +   F  L+ F          
Sbjct: 335 --ESIRDGLATWDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--- 388

Query: 315 GSKNYCLLLSASGKRG-FLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLN 373
            +    L+     K    + V+K  +    +    E TI +P  +       +++  +L+
Sbjct: 389 -TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALH 446

Query: 374 DVLPREQGLNLFSLRLLPALQNLEVLAV-GY--CFLIEEIVAVEDEETEKELATNTIINT 430
             +     ++ +++       +L    +  Y    +   +  +E  E             
Sbjct: 447 RSI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL--------- 492

Query: 431 VTLPRLKKLHLEDLREF--KSICSDNGVLVC-----NSLQEIEVY------NCPKLKRL 476
                 + + L D R F  + I  D+          N+LQ+++ Y      N PK +RL
Sbjct: 493 -----FRMVFL-DFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
               + +L +    +  +        +  ++  ++  ++ +      ++  +  L L   
Sbjct: 21  AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSD-IKSVQ--GIQYLPNVTKLFLNGN 75

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +  +   +++L NL  L L    I K + SL  L  L+ L LE   I ++  G+  L  
Sbjct: 76  KLTDIKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 132

Query: 272 LSHLSL 277
           L  L L
Sbjct: 133 LESLYL 138

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            +++++    +D + +   +  +   ++ L L  NK L  I      ++  L  L L   
Sbjct: 43  NSIDQIIANNSDIKSV-QGIQ-YLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDEN 97

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            I+ L + + DL  L+SL L   GI   +  L  L  L+ L L    I ++   +  L  
Sbjct: 98  KIKDLSS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTK 154

Query: 272 LSHLSL 277
           L  LSL
Sbjct: 155 LDTLSL 160

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L+ + +  N  +++P         L  +   +N+ L+ +PE    ++  L  +   + S
Sbjct: 154 FLKIIDVDNNSLKKLPDLPPS----LEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNS 206

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           ++ LP+      +L S++     IL+ +P L  L  L  +  +   ++ +P+    LE L
Sbjct: 207 LKKLPDL---PLSLESIVAGNN-ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 262

Query: 273 SHLSL 277
           +    
Sbjct: 263 NVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
               + L       +P         L +L+   N  L  +PE     +  L V N    +
Sbjct: 72  QAHELELNNLGLSSLPELPPH----LESLVASCNS-LTELPELPQ-SLKSLLVDNNNLKA 125

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  LP        L  L +     L+++P L     L+ +D++   ++++P+      +L
Sbjct: 126 LSDLPP------LLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSL 175

Query: 273 SHLSL 277
             ++ 
Sbjct: 176 EFIAA 180

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 16/121 (13%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            +LE +++  N   E+P+        L  L+   N  L  +PE        LK L++ + 
Sbjct: 317 PSLEELNVSNNKLIELPALPPR----LERLIASFNH-LAEVPEL----PQNLKQLHVEYN 367

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +   P+    + +LR         L  VP L     L+ L +E   + E P+  E +E+
Sbjct: 368 PLREFPDIPESVEDLRMNSH-----LAEVPEL--PQNLKQLHVETNPLREFPDIPESVED 420

Query: 272 L 272
           L
Sbjct: 421 L 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +LE +    N  EE+P     +   L+T+   +N  L+ +P+        L+ LN+    
Sbjct: 216 SLESIVAGNNILEELPE--LQNLPFLTTIYADNNL-LKTLPD----LPPSLEALNVRDNY 268

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  LP     LT L             +  L     L YL+     I  + +    LE L
Sbjct: 269 LTDLPELPQSLTFLDVSENI----FSGLSELPP--NLYYLNASSNEIRSLCDLPPSLEEL 322

Query: 273 S 273
           +
Sbjct: 323 N 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           ++L  + + EN F  +          L  L    N+ ++ + +        L+ LN+ + 
Sbjct: 277 QSLTFLDVSENIFSGLSE----LPPNLYYLNASSNE-IRSLCD----LPPSLEELNVSNN 327

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +  LP     L  L +        L  VP L     L+ L +E   + E P+  E +E+
Sbjct: 328 KLIELPALPPRLERLIASFNH----LAEVPEL--PQNLKQLHVEYNPLREFPDIPESVED 381

Query: 272 LS 273
           L 
Sbjct: 382 LR 383

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           + + + L  N    + S        L  L L   + +Q I +  +  +  L  L L    
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87

Query: 213 IEVLPNSV-SDLTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPE-GM-E 267
           I+ L     S L++L+ L+     +   + +     L  L+ L++    I+         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 268 MLENLSHLSL 277
            L NL HL L
Sbjct: 147 NLTNLEHLDL 156

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 9e-09
 Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +L  + L  N  + +          L  L+      L  +      H+  LK LN+ H  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL 135

Query: 213 IEVLP--NSVSDLTNLRSLLLRWCGILKRVPS--LAKLLALQY----LDLEGTWIEEVPE 264
           I+        S+LTNL  L L    I + +    L  L  +      LDL    +  +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 265 GMEMLENLSHLSLF 278
           G      L  L+L 
Sbjct: 195 GAFKEIRLKELALD 208

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHT 211
           +L+++  +E +   + +    H + L  L + HN  +Q      +F ++  L+ L+L   
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 212 SIEVLPNSV-SDLTNLRSLLLR---WCGILKRVPSLA-KLLALQYLDLEGTWIEEVPEG- 265
            I+ +  +    L  +  L L        +  +   A K + L+ L L+   ++ VP+G 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 266 MEMLENLSHLSLF 278
            + L +L  + L 
Sbjct: 220 FDRLTSLQKIWLH 232

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF--VHMHGLKVLNLCH 210
           +   ++  +N F +         + L TL+LQ N  L+   +      +M  L+ L++  
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSL 412

Query: 211 TSIEVLPNS--VSDLTNLRSLLLRWCGILKRV-PSLAKLLALQYLDLEGTWIEEVPEGME 267
            S+         +   ++  L L    +   V   L   +  + LDL    I  +P+ + 
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV--KVLDLHNNRIMSIPKDVT 470

Query: 268 MLENLSHLSL 277
            L+ L  L++
Sbjct: 471 HLQALQELNV 480

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
            E    V     +   +P ++ P  + LS   L  N  +  +       +  L+VL L H
Sbjct: 30  NELESMVDYSNRNLTHVPKDLPPRTKALS---LSQNS-ISELRMPDISFLSELRVLRLSH 85

Query: 211 TSIEVLPNSVSD-LTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGME-- 267
             I  L   V     +L  L +     L+ +     + +L++LDL     + +P   E  
Sbjct: 86  NRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISC-CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 268 MLENLSHLSLF 278
            L  L+ L L 
Sbjct: 144 NLTKLTFLGLS 154

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
             + +SL +N   E+          L  L L HN+ ++ +    F+    L+ L++ H  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
           ++ +      + +LR L L +     L        L  L +L L      ++      L 
Sbjct: 112 LQNISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-----LL 164

Query: 271 NLSHLSLF 278
            ++HL L 
Sbjct: 165 PVAHLHLS 172

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 153 NLERVSLMENDFEEIPSNMSPHC----EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNL 208
           N+  +  ++     + S+         E +  L L  N     +  C       +KVL+L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDL 457

Query: 209 CHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEG 256
            +  I  +P  V+ L  L+ L +     LK VP     +L +LQY+ L  
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVA-SNQLKSVPDGVFDRLTSLQYIWLHD 506

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209
                  +++ E+    +P  +  H   ++TL++  N  L  +P         L+ L + 
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNN-LTSLPALPP----ELRTLEVS 89

Query: 210 HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEML 269
              +  LP     L  L          L  +P+L     L  L + G  +  +P     L
Sbjct: 90  GNQLTSLPVLPPGLLELSIFSNP----LTHLPAL--PSGLCKLWIFGNQLTSLPVLPPGL 143

Query: 270 ENLS 273
           + LS
Sbjct: 144 QELS 147

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
             L+ +S+ +N    +P+  S     L  L   +N+ L  +P        GL+ L++   
Sbjct: 141 PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQ-LTSLPMLP----SGLQELSVSDN 191

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +  LP   S+L  L +   R    L  +P+L     L+ L + G  +  +P     L+ 
Sbjct: 192 QLASLPTLPSELYKLWAYNNR----LTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKE 245

Query: 272 LS 273
           L 
Sbjct: 246 LM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 18/138 (13%)

Query: 140 RLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH 199
           +L   P        L   S        +PS        L  L +  N+ L  +P      
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQ-LTSLPVLPP-- 141

Query: 200 MHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWI 259
             GL+ L++    +  LP   S+L  L +   +    L  +P L     LQ L +    +
Sbjct: 142 --GLQELSVSDNQLASLPALPSELCKLWAYNNQ----LTSLPML--PSGLQELSVSDNQL 193

Query: 260 EEVPEGMEMLENLSHLSL 277
             +P     L  L   + 
Sbjct: 194 ASLPTLPSELYKLWAYNN 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 189 LQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLA 248
           +Q++  C     +G  VLN+  + +  LP+ +    ++ +L++     L  +P+L     
Sbjct: 31  VQKMRACL---NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNN-LTSLPAL--PPE 82

Query: 249 LQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
           L+ L++ G  +  +P     L  LS  S 
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSN 111

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
             L+ + +  N    +P   S     L  L++  N+ L  +P        GL  L++   
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSE----LKELMVSGNR-LTSLPM----LPSGLLSLSVYRN 271

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDL-----EGTWIEEVPEGM 266
            +  LP S+  L++  ++ L    + +R     + +                    P   
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 267 EMLENLSHLSLFMAAEEAARLSDRLDTF 294
             L   +   L  A E     +DR   F
Sbjct: 332 RALHLAAADWLVPAREGEPAPADRWHMF 359

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  ++L  N  + + + +      L TL L +N+ L  +P   F H+  L  L L    
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ 118

Query: 213 IEVLPNSVSD-LTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-EM 268
           ++ LP+ V D LT L+ L L     L+ +P+ A  KL  LQ L L    ++ VP G  + 
Sbjct: 119 LKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

Query: 269 LENLSHLSLF 278
           L  L  ++LF
Sbjct: 178 LGKLQTITLF 187

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214
           E++ L       +          L+ L L +N+ LQ +    F  +  L  L L +  + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 215 VLPNSVSD-LTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-EMLE 270
            LP  V D LT L  L L     LK +PS    +L  L+ L L    ++ +P G  + L 
Sbjct: 97  SLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155

Query: 271 NLSHLSL 277
           NL  LSL
Sbjct: 156 NLQTLSL 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECF--FVHMHGLKVLNLCH 210
               +    N   +       H   L TL+LQ N+ L+ + +       M  L+ L++  
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQ 383

Query: 211 TSIEVLPNSV--SDLTNLRSLLLRWCGILKRVPSLAKLLA-LQYLDLEGTWIEEVPEGME 267
            S+         S   +L SL +    +   +     L   ++ LDL    I+ +P+ + 
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKIKSIPKQVV 441

Query: 268 MLENLSHLSL 277
            LE L  L++
Sbjct: 442 KLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 153 NLERVSLMENDFEEIP--SNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
            LE + L  N  +E+   + M+   + L  L +  N       +        L  LN+  
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 211 TSIEVLPNSVSD--LTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGM-E 267
                L +++       ++ L L    I      + KL ALQ L++    ++ VP+G+ +
Sbjct: 409 NI---LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 268 MLENLSHLSLF 278
            L +L  + L 
Sbjct: 466 RLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 46/353 (13%), Positives = 105/353 (29%), Gaps = 44/353 (12%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
               +++ +N   E+ ++       L  L++ HN+ +Q +    F     L+ L+L H  
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGI--LKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
           +  +        NL+ L L +     L        +  L++L L  T +E+    +  + 
Sbjct: 81  LVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIA 136

Query: 271 NLSHLSLFMAAEEAARLSDRLDTFVGYFST---LNDFNIYVKSTDGRGSKNYCLLLSASG 327
           +L+   + +   E     +  +    + +    +              S      L  S 
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 328 KRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSL 387
            +  LE +K     +          +    +  +E                   + +  L
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-------------TTWNSFIRILQL 243

Query: 388 RLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTV------------TLPR 435
                +    +  V     ++         + K L+ + +++ V            +   
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 436 LKKLHLEDLREFKSICSDNGV------LVCNSLQEIEVYNC---PKLKRLSLS 479
           +K   +   R    +C              N L +    NC    +L+ L L 
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 153 NLERVSLMENDFEEI-PSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           +L+++ + +N              + L +L +  N     I  C       +KVL+L   
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR---IKVLDLHSN 431

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEG 256
            I+ +P  V  L  L+ L +     LK VP     +L +LQ + L  
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHT 477

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214
             + L  N  + +P+ +      L+ L L  NK LQ +P   F  +  L  LNL    ++
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 215 VLPNSVSD-LTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-EMLE 270
            LPN V D LT L+ L L     L+ +P     KL  L+ L L    ++ VP+G+ + L 
Sbjct: 90  SLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 271 NLSHLSLF 278
           +L ++ L 
Sbjct: 149 SLQYIWLH 156

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
               +  L + +  +  S      + ++TL       ++ I      +++ L  +N  + 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG-IKSIDG--VEYLNNLTQINFSNN 78

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +  +   + +LT L  +L+    I   +  LA L  L  L L    I ++   ++ L N
Sbjct: 79  QLTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLFNNQITDIDP-LKNLTN 135

Query: 272 LSHLSL 277
           L+ L L
Sbjct: 136 LNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL+ +SL  N  ++I +        L+ L L +N+ +  +       +  L  L L    
Sbjct: 222 NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQ 276

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  +   ++ LT L +L L    + + +  ++ L  L YL L    I ++   +  L  L
Sbjct: 277 ISNISP-LAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKL 333

Query: 273 SHLSL 277
             L  
Sbjct: 334 QRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + L EN  E+I      + + L+ L L  N  +  I       +  L+ L   +  
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNK 342

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  +  S+++LTN+  L      I   +  LA L  +  L L        P       N+
Sbjct: 343 VSDVS-SLANLTNINWLSAGHNQI-SDLTPLANLTRITQLGLNDQAWTNAPV--NYKANV 398

Query: 273 SHLSL 277
           S  + 
Sbjct: 399 SIPNT 403

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  ++L  N   +I      +   L+ L L  N  +  I       +  L+ L+  +  
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQV 167

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
            ++ P  +++LT L  L +    +   +  LAKL  L+ L      I ++   + +L NL
Sbjct: 168 TDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDIT-PLGILTNL 223

Query: 273 SHLSL 277
             LSL
Sbjct: 224 DELSL 228

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL R+ L  N   +I +        L  L   +   +  +      ++  L+ L++    
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNK 188

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  +   ++ LTNL SL+     I   +  L  L  L  L L G  ++++   +  L NL
Sbjct: 189 VSDISV-LAKLTNLESLIATNNQI-SDITPLGILTNLDELSLNGNQLKDIG-TLASLTNL 245

Query: 273 SHLSL 277
           + L L
Sbjct: 246 TDLDL 250

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214
           + + L +N   ++   +      L  L L  N+ L  +P   F  +  L VL+L    + 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 215 VLPNSVSD-LTNLRSLLLRWCGILKRVPS-LAKLLALQYLDLEGTWIEEVPEGM-EMLEN 271
           VLP++V D L +L+ L +  C  L  +P  + +L  L +L L+   ++ +P G  + L +
Sbjct: 102 VLPSAVFDRLVHLKELFM-CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 272 LSHLSLF 278
           L+H  LF
Sbjct: 161 LTHAYLF 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L  N  + +P+ +      L  L+L  N+ LQ +P+  F  +  L  LNL H  
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 213 IEVLPNSVSD-LTNLRSLLLRWCGILKRVPSLA--KLLALQYLDLEGTWIEEVPEGM-EM 268
           ++ LP  V D LTNL  L L     L+ +P     KL  L+ L L    ++ VP+G+ + 
Sbjct: 145 LQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

Query: 269 LENLSHLSLF 278
           L +L ++ L 
Sbjct: 204 LTSLQYIWLH 213

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            LE ++   N    +P   +     L  L +++N+ L  +PE        L+ L++    
Sbjct: 141 LLEYINADNNQLTMLPELPTS----LEVLSVRNNQ-LTFLPEL----PESLEALDVSTNL 191

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +E LP       +     +                   +       I  +PE +  L+  
Sbjct: 192 LESLPAVPVRNHHSEETEI-------------------FFRCRENRITHIPENILSLDPT 232

Query: 273 SHLSL 277
             + L
Sbjct: 233 CTIIL 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEI--LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209
           +  E+ +L   +  E  S +   C I   S L L     L  +P+        + VL + 
Sbjct: 34  DKWEKQALPGENRNEAVSLL-KECLINQFSELQLNRLN-LSSLPDNLPPQ---ITVLEIT 88

Query: 210 HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEML 269
             ++  LP   + L  L +   R    L  +P L    +L++LD++   +  +PE   +L
Sbjct: 89  QNALISLPELPASLEYLDACDNR----LSTLPEL--PASLKHLDVDNNQLTMLPELPALL 142

Query: 270 ENLS 273
           E ++
Sbjct: 143 EYIN 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +LE +   +N    +P   +     L  L + +N+ L  +PE        L+ +N  +  
Sbjct: 101 SLEYLDACDNRLSTLPELPAS----LKHLDVDNNQ-LTMLPEL----PALLEYINADNNQ 151

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           + +LP      T+L  L +R    L  +P L    +L+ LD+    +E +P       + 
Sbjct: 152 LTMLPEL---PTSLEVLSVRNNQ-LTFLPEL--PESLEALDVSTNLLESLPAVPVRNHHS 205

Query: 273 SHLSLF 278
               +F
Sbjct: 206 EETEIF 211

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMH---GLKVLNLC 209
           +LE +S+  N    +P         L  L +  N  L+ +P     + H           
Sbjct: 161 SLEVLSVRNNQLTFLPELPES----LEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCR 215

Query: 210 HTSIEVLPNSVSDLTNLRSLLLR 232
              I  +P ++  L    +++L 
Sbjct: 216 ENRITHIPENILSLDPTCTIILE 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NLE ++L  N   +I      +   L+ L +  NK +  I      ++  L+ L L   +
Sbjct: 67  NLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNEDN 121

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  +   +++LT + SL L     L  +  L+ +  L YL +  + +++V   +  L +L
Sbjct: 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDL 179

Query: 273 SHLSL 277
             LSL
Sbjct: 180 YSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + +  N   +I +    +   L  L L  +  +  I      ++  +  LNL    
Sbjct: 89  KLTNLYIGTNKITDISA--LQNLTNLRELYLNEDN-ISDISP--LANLTKMYSLNLGANH 143

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
                + +S++T L  L +    + K V  +A L  L  L L    IE++   +  L +L
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSL 201

Query: 273 SHLSL 277
            + + 
Sbjct: 202 HYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  + +  N   ++      +   L+ L +  N+ +  I       +  LK+LN+    
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-ISDINA--VKDLTKLKMLNVGSNQ 276

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPS-LAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
           I  +   +++L+ L SL L    +       +  L  L  L L    I ++   +  L  
Sbjct: 277 ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSK 334

Query: 272 LSHLSL 277
           +     
Sbjct: 335 MDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 153 NLERVSLMENDFEEIP--SNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
           +L  +SL  N  E+I   ++++     L       N+ +  I      +M  L  L + +
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTS----LHYFTAYVNQ-ITDITP--VANMTRLNSLKIGN 230

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLE 270
             I  L   +++L+ L  L +    I   + ++  L  L+ L++    I ++   +  L 
Sbjct: 231 NKITDLSP-LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISDISV-LNNLS 287

Query: 271 NLSHLSL 277
            L+ L L
Sbjct: 288 QLNSLFL 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 202 GLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEE 261
           G   L      I  +    +DL      +L+   +   V +  +L ++  L + G  +  
Sbjct: 1   GAATLATLPAPINQIFP-DADLAEGIRAVLQKASV-TDVVTQEELESITKLVVAGEKVAS 58

Query: 262 VPEGMEMLENLSHLSL 277
           +  G+E L NL +L+L
Sbjct: 59  IQ-GIEYLTNLEYLNL 73

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 178 LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGIL 237
            +TL        Q  P+             L   S+  +     +L ++  L++    + 
Sbjct: 2   AATLATLPAPINQIFPDADLAE---GIRAVLQKASVTDVVT-QEELESITKLVVAGEKV- 56

Query: 238 KRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
             +  +  L  L+YL+L G  I ++   +  L  L++L +
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYI 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 153 NLERVSLMENDFEEIP--SNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
            L  + +  N   +I    +++     L  L +  N+ +  I      ++  L  L L +
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTK----LKMLNVGSNQ-ISDISV--LNNLSQLNSLFLNN 296

Query: 211 TSIEVL-PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEE 261
             +       +  LTNL +L L    I   +  LA L  +   D     I++
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRPLASLSKMDSADFANQVIKK 347

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           N++ +++         + +S     L  L +     +          +  L +L++ H++
Sbjct: 67  NIKDLTINNIHATNY-NPIS-GLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSA 123

Query: 213 IEVL-PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            +      ++ L  + S+ L + G +  +  L  L  L+ L+++   + +   G+E    
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPK 182

Query: 272 LSHLSLF 278
           L+ L  F
Sbjct: 183 LNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NLER+ +M  D              L+ L + H+             +  +  ++L +  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNG 147

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWI 259
                  +  L  L+SL +++ G+      +     L  L      I
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQTI 193

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 153 NLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            L+ +++  N F   IP         L  L L  NK+   IP+        L  L+L   
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 212 SIE-VLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIE-EVPEGM- 266
                +P      + L SL L        +P  +L K+  L+ LDL       E+PE + 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 267 EMLENLSHLSLF 278
            +  +L  L L 
Sbjct: 365 NLSASLLTLDLS 376

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 153 NLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFV--HMHGLKVLNLC 209
            L+ +++  N  +     +       L  L L  N         + +      LK L + 
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 210 HTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIE-EVPEGME 267
              I   +   VS   NL  L +        +P L    ALQ+LD+ G  +  +    + 
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 268 MLENLSHLSL 277
               L  L++
Sbjct: 245 TCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 153 NLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            L  + L  N  E EIP  +  + + L TL+L  N     IP     +   L  ++L + 
Sbjct: 443 KLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNN 500

Query: 212 SIE-VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDL 254
            +   +P  +  L NL  L L        +P  L    +L +LDL
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 153 NLERVSLMENDFE-EIPSNMSPHC-EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
           +L  + L  N+F   I  N+  +    L  L LQ+N +  +IP     +   L  L+L  
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSF 427

Query: 211 TSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGME 267
             +   +P+S+  L+ LR L L    +   +P  L  +  L+ L L+   +  E+P G+ 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 268 MLENLSHLSL 277
              NL+ +SL
Sbjct: 488 NCTNLNWISL 497

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           +++ + L      ++          L  L L  N+ +  I       +  L+ L++ +  
Sbjct: 108 SIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQ 162

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  L   +++L+ L +L      I   +  LA L  L  + L+   I +V   +    NL
Sbjct: 163 VSDLTP-LANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDV-SPLANTSNL 219

Query: 273 SHLSL 277
             ++L
Sbjct: 220 FIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            N  +++  +++  +  +      + ++TL       +  I      +++ L  L L   
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTG-VTTIEG--VQYLNNLIGLELKDN 73

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
            I  L   + +LT +  L L    + K V ++A L +++ LDL  T I +V   +  L N
Sbjct: 74  QITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSN 130

Query: 272 LSHLSL 277
           L  L L
Sbjct: 131 LQVLYL 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL+ + L  N    I          L  L + + + +  +      ++  L  L      
Sbjct: 130 NLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNK 184

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  +   ++ L NL  + L+   I   V  LA    L  + L    I   P       NL
Sbjct: 185 ISDISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTITNQPV--FYNNNL 240

Query: 273 SHLSL 277
              ++
Sbjct: 241 VVPNV 245

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           N+ ++ L  N   +I   ++ + + L  L L  NK ++ +       +  LK L+L H  
Sbjct: 69  NVTKLFLNGNKLTDI-KPLA-NLKNLGWLFLDENK-VKDL--SSLKDLKKLKSLSLEHNG 123

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  +   +  L  L SL L    I   +  L++L  L  L LE   I ++   +  L  L
Sbjct: 124 ISDING-LVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKL 180

Query: 273 SHLSL 277
            +L L
Sbjct: 181 QNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L EN  +++ S++    + L +L L+HN  +  I     VH+  L+ L L +  
Sbjct: 91  NLGWLFLDENKVKDL-SSLK-DLKKLKSLSLEHNG-ISDIN--GLVHLPQLESLYLGNNK 145

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  +   +S LT L +L L    I   +  LA L  LQ L L    I ++   +  L+NL
Sbjct: 146 ITDITV-LSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNL 202

Query: 273 SHLSL 277
             L L
Sbjct: 203 DVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGI 236
           + S  +       Q   +  F         NL   S+       ++L ++  ++     I
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAE---TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI 58

Query: 237 LKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
            K V  +  L  +  L L G  + ++ + +  L+NL  L L
Sbjct: 59  -KSVQGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFL 97

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
           +    +   +   ++ P  E L+ L +++ ++LQ +       +  L+ L +  + +  +
Sbjct: 13  LRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 217 PNSV-SDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEG 256
                     L  L L +  +        + L+LQ L L G
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL+ + L  N   ++ S +      L  L +  N+ L+ +     +    L  L L +  
Sbjct: 64  NLKELHLSHNQISDL-SPLK-DLTKLEELSVNRNR-LKNLN---GIPSACLSRLFLDNNE 117

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +    + +  L NL  L +R   + K +  L  L  L+ LDL G  I     G+  L+ +
Sbjct: 118 LRDTDS-LIHLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174

Query: 273 SHLSL 277
           + + L
Sbjct: 175 NWIDL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            LE +S+  N  + +    S     LS L L +N+ L+       +H+  L++L++ +  
Sbjct: 86  KLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNE-LRDTD--SLIHLKNLEILSIRNNK 139

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           ++ +   +  L+ L  L L    I      L +L  + ++DL G      P  ++    L
Sbjct: 140 LKSIVM-LGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQKCVNEP--VKYQPEL 195

Query: 273 SHL 275
              
Sbjct: 196 YIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 203 LKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEV 262
               NL   S+  L +   +L+ +++       I + +  +     L+ L L    I ++
Sbjct: 21  AVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQISDL 78

Query: 263 PEGMEMLENLSHLSL 277
              ++ L  L  LS+
Sbjct: 79  -SPLKDLTKLEELSV 92

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 181 LLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSD-LTNLRSLLLRWCGILKR 239
           L L+ NK LQ +P   F  +  L  L+L    I+ LP+ V D LT L  L L     L+ 
Sbjct: 33  LELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQS 90

Query: 240 VPSLA--KLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSLF 278
           +P+    KL  L+ L L+   ++ VP+G+ + L +L  + L 
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 181 LLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSD-LTNLRSLLLRWCGILKR 239
           LLL  N+  +   +  F  +  L  L L    +  +  +  +  ++++ L L     +K 
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL-GENKIKE 92

Query: 240 VPSLA--KLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSLF 278
           + +     L  L+ L+L    I  V  G  E L +L+ L+L 
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 27/152 (17%)

Query: 153 NLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
            L  +    N     +P ++S     L  +    N+    IP+ +         + +   
Sbjct: 126 TLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 212 SIE------------------------VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLL 247
            +                                   N + + L    +   +  +    
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244

Query: 248 ALQYLDLEGTWIE-EVPEGMEMLENLSHLSLF 278
            L  LDL    I   +P+G+  L+ L  L++ 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 153 NLERVSL--MENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210
             E+V L  M    E++ + +S   +    L L  N  +++I       M  L++L+L  
Sbjct: 24  EAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNN-IEKI--SSLSGMENLRILSLGR 79

Query: 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--GMEM 268
             I+ + N  +    L  L + +  I   +  + KL+ L+ L +    I    E   +  
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 269 LENLSHLSL 277
           L+ L  L L
Sbjct: 139 LDKLEDLLL 147

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
           +N         + +   +        L++L   ++  +  +       + GL  L     
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTG--IEKLTGLTKLICTSN 74

Query: 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
           +I  L   +S  TNL  L      +      +  L  L YL+ +   + ++         
Sbjct: 75  NITTLD--LSQNTNLTYLACDSNKL--TNLDVTPLTKLTYLNCDTNKLTKLDVS--QNPL 128

Query: 272 LSHLSL 277
           L++L+ 
Sbjct: 129 LTYLNC 134

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  ++   N    +          L+ L    NK L ++          L  LN    +
Sbjct: 86  NLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNK-LTKLD---VSQNPLLTYLNCARNT 138

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           +  +   VS  T L  L       +     +     L  LD     I E+   +   + L
Sbjct: 139 LTEID--VSHNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKITELD--VSQNKLL 193

Query: 273 SHLSL 277
           + L+ 
Sbjct: 194 NRLNC 198

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  ++   N   EI  +   H   L+ L    NK + ++          L  L+     
Sbjct: 128 LLTYLNCARNTLTEIDVS---HNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  L   VS    L  L      I      L + + L +LD     + E+   +  L  L
Sbjct: 182 ITELD--VSQNKLLNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQL 235

Query: 273 SHLSL 277
           ++   
Sbjct: 236 TYFDC 240

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 11/125 (8%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
            L  +  ++ D  EI      H   L     +  + ++ +      H   L +L+     
Sbjct: 255 KLTTLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAG 308

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENL 272
           I  L   +S    L  L L     L  +  ++    L+ L      I++    +  +  L
Sbjct: 309 ITELD--LSQNPKLVYLYLNNTE-LTELD-VSHNTKLKSLSCVNAHIQDFSS-VGKIPAL 363

Query: 273 SHLSL 277
           ++   
Sbjct: 364 NNNFE 368

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLL---LQHNKYLQRIPECFFVHMHGLKVLNLC 209
            L+ ++L     E      S        L    L HN                L  LNL 
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 210 HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEG 256
            T ++ +P  +     L  L L +   L R PS  +L  +  L L+G
Sbjct: 262 FTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIP---ECFFVHMHGLKVLNL 208
             L+ +S+ +                LSTL L  N  L           +    L+VL L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 209 CHTSIEVLPNSVS----DLTNLRSLLLRWCGILKRVPSLAKLL--ALQYLDLEGTWIEEV 262
            +  +E      S        L+ L L    +     + +      L  L+L  T +++V
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 263 PEGMEMLENLSHLSL 277
           P+G  +   LS L L
Sbjct: 269 PKG--LPAKLSVLDL 281

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 189 LQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLA 248
           +++  +  + +    + L+L    I V+ N  + L    ++      I +++     L  
Sbjct: 9   IEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRR 65

Query: 249 LQYLDLEGTWIEEVPEGM-EMLENLSHLSL 277
           L+ L +    I  + EG+ + L +L+ L L
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELIL 95

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 140 RLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVH 199
            L +   E +W      + +   D          +   L  +      YL  +   F + 
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 200 M-------HGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYL 252
                     ++VL+L H  + VL + +  L  +  L L    +    P+LA L  L+ L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 253 DLEGTWIEEVPEGMEMLENLSHLSL 277
                 +E V  G+  L  L  L L
Sbjct: 492 QASDNALENVD-GVANLPRLQELLL 515

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	521
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.72
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.52
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.52
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.49
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.42
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.41
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.41
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.34
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.26
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.17
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.88
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.38
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.41

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=2.4e-21  Score=207.50  Aligned_cols=156  Identities=22%  Similarity=0.280  Sum_probs=132.0

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ..+...+..+..+|...  .+++++|++++|.+..++...+.++++|++|++++|. +..+++..|+++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCSSCCTTS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcccCCCCC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCC
Confidence            34566677788888743  4789999999999999988777799999999999998 77887666799999999999999


Q ss_pred             CCCcc-CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCc--ccCccccCCCCCcccccccc------
Q 041519          212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIE--EVPEGMEMLENLSHLSLFMA------  280 (521)
Q Consensus       212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~~~~~------  280 (521)
                      .++.+ |.+++++.+|++|++++|. +..+|  .++++.+|++|++++|.+.  .+|..++++++|++|++...      
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             cccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            99976 8889999999999999986 66665  7999999999999999887  57999999999999988754      


Q ss_pred             hHHHHhhHhccc
Q 041519          281 AEEAARLSDRLD  292 (521)
Q Consensus       281 ~~~i~~L~~~L~  292 (521)
                      +..++.++ +|+
T Consensus       170 ~~~~~~l~-~L~  180 (606)
T 3vq2_A          170 VNDLQFLR-ENP  180 (606)
T ss_dssp             TTTTHHHH-HCT
T ss_pred             hhhhhhhh-ccc
Confidence            44566666 655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.1e-21  Score=193.54  Aligned_cols=229  Identities=24%  Similarity=0.347  Sum_probs=171.6

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      ..++.|++.++.+..+|..++ .+++|++|++++|. +..+|..+ +.+++|++|++++|.+..+|..++.+.+|++|++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~-l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAG-LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSC-CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchhcChhhh-hCCCCCEEECCCCC-ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            478899999999998888877 68899999999888 66888765 8889999999999988888888889999999999


Q ss_pred             ccCCCCCccC-CccC---------CCCCCEEEeeCCcCcccCccccCCCCCcccccccchHHHHhhHhcccceEEEeccc
Q 041519          232 RWCGILKRVP-SLAK---------LLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      ++|..+..+| .++.         +.+|++|++++|.++.+|..++++++|+                   +|++..+.+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~-------------------~L~L~~N~l  218 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK-------------------SLKIRNSPL  218 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCC-------------------EEEEESSCC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCC-------------------EEEccCCCC
Confidence            9888788888 6654         7888888888887777776555444333                   332221111


Q ss_pred             cchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEecccCcccccccccCCCc
Q 041519          302 NDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQG  381 (521)
Q Consensus       302 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~  381 (521)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (328)
T 4fcg_A          219 --------------------------------------------------------------------------------  218 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCC
Q 041519          382 LNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNS  461 (521)
Q Consensus       382 l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~  461 (521)
                       ..+|.. +..+++|++|++++|.....++...                ..+++|++|++.+|..+..++.  ....+++
T Consensus       219 -~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~----------------~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~  278 (328)
T 4fcg_A          219 -SALGPA-IHHLPKLEELDLRGCTALRNYPPIF----------------GGRAPLKRLILKDCSNLLTLPL--DIHRLTQ  278 (328)
T ss_dssp             -CCCCGG-GGGCTTCCEEECTTCTTCCBCCCCT----------------TCCCCCCEEECTTCTTCCBCCT--TGGGCTT
T ss_pred             -CcCchh-hccCCCCCEEECcCCcchhhhHHHh----------------cCCCCCCEEECCCCCchhhcch--hhhcCCC
Confidence             011111 3567788888888887666654332                5688999999999888888876  4567799


Q ss_pred             ccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehhhccccccC
Q 041519          462 LQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWD  510 (521)
Q Consensus       462 L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l~~~  510 (521)
                      |+.|++++|+.+..+|..+..+++        |+.+.+.......+.+.
T Consensus       279 L~~L~L~~n~~~~~iP~~l~~L~~--------L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          279 LEKLDLRGCVNLSRLPSLIAQLPA--------NCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             CCEEECTTCTTCCCCCGGGGGSCT--------TCEEECCGGGSCC----
T ss_pred             CCEEeCCCCCchhhccHHHhhccC--------ceEEeCCHHHHHHHhhh
Confidence            999999999999999998877766        99999886666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=3.3e-22  Score=219.34  Aligned_cols=329  Identities=14%  Similarity=0.173  Sum_probs=223.8

Q ss_pred             ccccCCCcccccCCccEEEeecCCCCC------------------CCCCc-CCCCCCccEEEcccCcCCCCCchhHhhCC
Q 041519          140 RLLKFPGEQEWEENLERVSLMENDFEE------------------IPSNM-SPHCEILSTLLLQHNKYLQRIPECFFVHM  200 (521)
Q Consensus       140 ~~~~~p~~~~~~~~l~~L~l~~~~~~~------------------l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l  200 (521)
                      .+..+|.....+++++.|++++|.+..                  +|..+ +..+++|++|++++|.....+|..+ +++
T Consensus       436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L  514 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDL  514 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGC
T ss_pred             cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCC
Confidence            334478888888999999999999998                  88876 3479999999999998778888765 899


Q ss_pred             CCCcEEEccCCC-CCc--cCccccCCc-------ccceeecccCCCCCccCC---ccCCCCCCEEEeeCCcCcccCcccc
Q 041519          201 HGLKVLNLCHTS-IEV--LPNSVSDLT-------NLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGTWIEEVPEGME  267 (521)
Q Consensus       201 ~~L~~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~l~~lp~~i~  267 (521)
                      ++|++|++++|. ++.  +|..++.+.       +|++|++++|. +..+|.   ++++.+|++|++++|.+..+| .++
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~  592 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG  592 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence            999999999998 874  888777776       99999999986 678886   899999999999999888999 899


Q ss_pred             CCCCCcccccccc-----hHHHHhhHhc-ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCC--C----cccc
Q 041519          268 MLENLSHLSLFMA-----AEEAARLSDR-LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRG--F----LEVD  335 (521)
Q Consensus       268 ~l~~L~~L~~~~~-----~~~i~~L~~~-L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~--~----~~~~  335 (521)
                      .+++|++|++...     +..+..++ + |+.|++..+.+..+...+.. ....+|+.+.+........  .    ....
T Consensus       593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~-~~L~~L~Ls~N~L~~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~  670 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIEEIPEDFCAFT-DQVEGLGFSHNKLKYIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDY  670 (876)
T ss_dssp             TTSEESEEECCSSCCSCCCTTSCEEC-TTCCEEECCSSCCCSCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred             CCCcceEEECcCCccccchHHHhhcc-ccCCEEECcCCCCCcCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccc
Confidence            9999999988754     66788888 8 99999887766543322111 1122355555543222110  0    0111


Q ss_pred             ceeeeeeeeeecCccccc------CccccceEEEecccCcccccccc------------------cCCCcccccccchh-
Q 041519          336 KSVRLFACKICETEETIV------LPEDVQYLEMFGVDDVASLNDVL------------------PREQGLNLFSLRLL-  390 (521)
Q Consensus       336 ~~~~L~~L~i~~~~~~~~------~p~~L~~L~l~~~~~l~~l~~~~------------------~~~~~l~~~p~~~l-  390 (521)
                      ...+|+.|.++++.....      ..+.|+.|+++++. +..++..+                  -..+.+..+|..+. 
T Consensus       671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence            234788888877744311      13567888877652 22222211                  11123344454442 


Q ss_pred             hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc------cccccccCCCcccCCCccE
Q 041519          391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR------EFKSICSDNGVLVCNSLQE  464 (521)
Q Consensus       391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~------~L~~~~~~~~~~~~p~L~~  464 (521)
                      ..+++|+.|+|+++. +..++...                ..+++|+.|++++++      -...++.  ....+++|+.
T Consensus       750 ~~l~~L~~L~Ls~N~-L~~lp~~l----------------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~  810 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNC-FSSFPTQP----------------LNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQ  810 (876)
T ss_dssp             TTCTTCCEEECCSSC-CSSCCCGG----------------GGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCE
T ss_pred             ccCCCcCEEEeCCCC-CCccchhh----------------hcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCE
Confidence            367777777777663 33343222                457888888887633      2233443  4445788888


Q ss_pred             EEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehhhc
Q 041519          465 IEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELW  504 (521)
Q Consensus       465 L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~~~  504 (521)
                      |++++|. +..+|..+          +++|+.|++...-+
T Consensus       811 L~Ls~N~-L~~Ip~~l----------~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          811 LQIGSND-IRKVDEKL----------TPQLYILDIADNPN  839 (876)
T ss_dssp             EECCSSC-CCBCCSCC----------CSSSCEEECCSCTT
T ss_pred             EECCCCC-CCccCHhh----------cCCCCEEECCCCCC
Confidence            8888886 47888765          34588888884333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=6.2e-22  Score=212.79  Aligned_cols=327  Identities=13%  Similarity=0.187  Sum_probs=227.8

Q ss_pred             ccccCCCcccccCCccEEEeecCCCCC------------------CCCCcC-CCCCCccEEEcccCcCCCCCchhHhhCC
Q 041519          140 RLLKFPGEQEWEENLERVSLMENDFEE------------------IPSNMS-PHCEILSTLLLQHNKYLQRIPECFFVHM  200 (521)
Q Consensus       140 ~~~~~p~~~~~~~~l~~L~l~~~~~~~------------------l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l  200 (521)
                      .+..+|.....++++++|++++|.+..                  +|..+. .++++|++|++++|.....+|..+ +++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l  272 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL  272 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTC
T ss_pred             CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcC
Confidence            444578888888999999999999998                  887763 278999999999998777888775 899


Q ss_pred             CCCcEEEccCCC-CC--ccCccccCC------cccceeecccCCCCCccCC---ccCCCCCCEEEeeCCcCc-ccCcccc
Q 041519          201 HGLKVLNLCHTS-IE--VLPNSVSDL------TNLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGTWIE-EVPEGME  267 (521)
Q Consensus       201 ~~L~~L~L~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~l~-~lp~~i~  267 (521)
                      ++|++|++++|. ++  .+|..++.+      .+|++|++++|. +..+|.   ++++.+|++|++++|.+. .+| .++
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            999999999998 88  489888887      999999999986 678885   899999999999999998 899 899


Q ss_pred             CCCCCcccccccc-----hHHHHhhHhc-ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCC-cccc-----
Q 041519          268 MLENLSHLSLFMA-----AEEAARLSDR-LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGF-LEVD-----  335 (521)
Q Consensus       268 ~l~~L~~L~~~~~-----~~~i~~L~~~-L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~-----  335 (521)
                      .+++|++|++...     +..++.++ + |+.|++..+.+..+...+. ...+.+|+.+.+......... ....     
T Consensus       351 ~l~~L~~L~L~~N~l~~lp~~l~~l~-~~L~~L~Ls~N~l~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          351 SEIKLASLNLAYNQITEIPANFCGFT-EQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EEEEESEEECCSSEEEECCTTSEEEC-TTCCEEECCSSCCSSCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             CCCCCCEEECCCCccccccHhhhhhc-ccCcEEEccCCcCcccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            9999999988754     66788888 8 9999988776654332221 112235555555432221110 0011     


Q ss_pred             --ceeeeeeeeeecCccccc------CccccceEEEecccCccccccc------------------ccCCCcccccccch
Q 041519          336 --KSVRLFACKICETEETIV------LPEDVQYLEMFGVDDVASLNDV------------------LPREQGLNLFSLRL  389 (521)
Q Consensus       336 --~~~~L~~L~i~~~~~~~~------~p~~L~~L~l~~~~~l~~l~~~------------------~~~~~~l~~~p~~~  389 (521)
                        ...+|+.|.++++.....      ..+.|+.|+++++.- ..++..                  --..+.+..+|..+
T Consensus       429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~  507 (636)
T 4eco_A          429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF  507 (636)
T ss_dssp             CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred             cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence              344788888877744311      135677887776532 222211                  11123344555544


Q ss_pred             h-hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc------cccccccCCCcccCCCc
Q 041519          390 L-PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR------EFKSICSDNGVLVCNSL  462 (521)
Q Consensus       390 l-~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~------~L~~~~~~~~~~~~p~L  462 (521)
                      . ..+++|++|+|+++.. ..++...                ..+++|++|+++++.      -...++.  ....+++|
T Consensus       508 ~~~~l~~L~~L~Ls~N~l-~~ip~~~----------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L  568 (636)
T 4eco_A          508 RATTLPYLVGIDLSYNSF-SKFPTQP----------------LNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSL  568 (636)
T ss_dssp             STTTCTTCCEEECCSSCC-SSCCCGG----------------GGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSC
T ss_pred             hhccCCCcCEEECCCCCC-CCcChhh----------------hcCCCCCEEECCCCcccccCcccccChH--HHhcCCCC
Confidence            3 3777888888877643 3344322                457888888885432      2334444  44567889


Q ss_pred             cEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehh
Q 041519          463 QEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKE  502 (521)
Q Consensus       463 ~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~  502 (521)
                      ++|++++|. ++.+|..+          +++|+.|++...
T Consensus       569 ~~L~Ls~N~-l~~ip~~~----------~~~L~~L~Ls~N  597 (636)
T 4eco_A          569 TQLQIGSND-IRKVNEKI----------TPNISVLDIKDN  597 (636)
T ss_dssp             CEEECCSSC-CCBCCSCC----------CTTCCEEECCSC
T ss_pred             CEEECCCCc-CCccCHhH----------hCcCCEEECcCC
Confidence            999998887 48888765          256999988843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=8.4e-21  Score=201.68  Aligned_cols=160  Identities=21%  Similarity=0.236  Sum_probs=134.6

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .....+..+..+|..  ..+++++|++++|.++.++...+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus        11 ~~~c~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           11 TYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             EEECCSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEEeCCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc
Confidence            445556677788864  34689999999999999988777799999999999998 888887777999999999999999


Q ss_pred             CCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc--cCccccCCCCCcccccccc------h
Q 041519          213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFMA------A  281 (521)
Q Consensus       213 l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~------~  281 (521)
                      +..+| ..++.+.+|++|++++|. +..+|  .++++.+|++|++++|.+..  +|..++++++|++|++...      +
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~  166 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred             CCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence            98765 788999999999999985 88887  59999999999999998875  7899999999999998754      4


Q ss_pred             HHHHhhHhcc----cceEEE
Q 041519          282 EEAARLSDRL----DTFVGY  297 (521)
Q Consensus       282 ~~i~~L~~~L----~~L~~~  297 (521)
                      ..++.++ +|    +.+++.
T Consensus       167 ~~~~~l~-~L~~~~~~L~l~  185 (570)
T 2z63_A          167 TDLRVLH-QMPLLNLSLDLS  185 (570)
T ss_dssp             GGGHHHH-TCTTCCCEEECT
T ss_pred             HHccchh-ccchhhhhcccC
Confidence            5677787 77    455443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=1.1e-21  Score=198.39  Aligned_cols=294  Identities=15%  Similarity=0.155  Sum_probs=206.8

Q ss_pred             ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccce
Q 041519          150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRS  228 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~  228 (521)
                      ..++++++++.++.+..+|..++..+++|++|++++|. +..++...|+.+++|++|++++|.+..+| ..++.+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            34789999999999999998877788999999999998 77777766689999999999999988664 55789999999


Q ss_pred             eecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc---hHHHHhhHhcccceEEEecccc
Q 041519          229 LLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA---AEEAARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       229 L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~---~~~i~~L~~~L~~L~~~~~~~~  302 (521)
                      |++++|. +..+| . ++++.+|++|++++|.+..++. .++.+++|++|++...   ...++.++ +|+.|++..+...
T Consensus       122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~L~~L~l~~n~l~  199 (390)
T 3o6n_A          122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLS  199 (390)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCT-TCSEEECCSSCCS
T ss_pred             EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccccccc-ccceeeccccccc
Confidence            9999985 88888 5 6889999999999998887754 4888899999888754   22456677 7888777655443


Q ss_pred             chhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEecccCcccccccccC
Q 041519          303 DFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMFGVDDVASLNDVLPR  378 (521)
Q Consensus       303 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~~~~~l~~l~~~~~~  378 (521)
                      ..       ....+|+.+.+.....  ...+.....+|+.|.++++...    ....+.|+.|+++++            
T Consensus       200 ~~-------~~~~~L~~L~l~~n~l--~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n------------  258 (390)
T 3o6n_A          200 TL-------AIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN------------  258 (390)
T ss_dssp             EE-------ECCSSCSEEECCSSCC--CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS------------
T ss_pred             cc-------CCCCcceEEECCCCee--eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCC------------
Confidence            21       1223444444322111  1111112235666666665321    112356777776654            


Q ss_pred             CCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCccc
Q 041519          379 EQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLV  458 (521)
Q Consensus       379 ~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~  458 (521)
                        .+...+...+..+++|++|+++++ .+..++..                ...+++|++|++.++ ++..++.  ....
T Consensus       259 --~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----------------~~~l~~L~~L~L~~n-~l~~~~~--~~~~  316 (390)
T 3o6n_A          259 --ELEKIMYHPFVKMQRLERLYISNN-RLVALNLY----------------GQPIPTLKVLDLSHN-HLLHVER--NQPQ  316 (390)
T ss_dssp             --CCCEEESGGGTTCSSCCEEECCSS-CCCEEECS----------------SSCCTTCCEEECCSS-CCCCCGG--GHHH
T ss_pred             --cCCCcChhHccccccCCEEECCCC-cCcccCcc----------------cCCCCCCCEEECCCC-cceecCc--cccc
Confidence              223333334577889999999887 34444322                246899999999986 5777765  4556


Q ss_pred             CCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          459 CNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       459 ~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      +++|++|++.+|+ ++.+|.  .        .+++|+.|++.
T Consensus       317 l~~L~~L~L~~N~-i~~~~~--~--------~~~~L~~L~l~  347 (390)
T 3o6n_A          317 FDRLENLYLDHNS-IVTLKL--S--------THHTLKNLTLS  347 (390)
T ss_dssp             HTTCSEEECCSSC-CCCCCC--C--------TTCCCSEEECC
T ss_pred             cCcCCEEECCCCc-cceeCc--h--------hhccCCEEEcC
Confidence            7999999999986 677763  2        26669999997

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=4.8e-21  Score=202.62  Aligned_cols=325  Identities=16%  Similarity=0.147  Sum_probs=188.6

Q ss_pred             cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519          137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL  216 (521)
Q Consensus       137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l  216 (521)
                      .+..+..+|...  .+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+.+++|++|++++|.+..+
T Consensus        13 ~~~~l~~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           13 RSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             TTSCCSSCCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             CCCccccccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCcc
Confidence            345566677643  3678888888888887766555678888888888887 6666655567888888888888887766


Q ss_pred             Ccc-ccCCcccceeecccCCCCCc--cC-CccCCCCCCEEEeeCCc-CcccC-ccccCCCCCcccccccc------hHHH
Q 041519          217 PNS-VSDLTNLRSLLLRWCGILKR--VP-SLAKLLALQYLDLEGTW-IEEVP-EGMEMLENLSHLSLFMA------AEEA  284 (521)
Q Consensus       217 p~~-i~~L~~L~~L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~~~~~------~~~i  284 (521)
                      |.. ++.+.+|++|++++|. +..  .| .++++.+|++|++++|. +..+| ..++++++|++|++...      +..+
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             CHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            654 7788888888888875 553  35 67788888888888885 66666 35777888888777643      5566


Q ss_pred             HhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCC---cc-ccceeeeeeeeeecCcccc--------
Q 041519          285 ARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGF---LE-VDKSVRLFACKICETEETI--------  352 (521)
Q Consensus       285 ~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~---~~-~~~~~~L~~L~i~~~~~~~--------  352 (521)
                      +.++ +|++|++..+..........  ..+.+|+.+.+.........   .. .....+|+.+.+.++....        
T Consensus       169 ~~l~-~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (549)
T 2z81_A          169 KSIR-DIHHLTLHLSESAFLLEIFA--DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK  245 (549)
T ss_dssp             TTCS-EEEEEEEECSBSTTHHHHHH--HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred             hccc-cCceEecccCcccccchhhH--hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence            7777 77777776555443332221  12445555554432221110   00 0112234444443331100        


Q ss_pred             --cCccccceEEEecccCc------------------------------c---------------cccccccCCCccccc
Q 041519          353 --VLPEDVQYLEMFGVDDV------------------------------A---------------SLNDVLPREQGLNLF  385 (521)
Q Consensus       353 --~~p~~L~~L~l~~~~~l------------------------------~---------------~l~~~~~~~~~l~~~  385 (521)
                        .....|+.+++.+|.-.                              .               .+..+--..+.+..+
T Consensus       246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i  325 (549)
T 2z81_A          246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV  325 (549)
T ss_dssp             GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred             HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence              01123333333333110                              0               000000011233445


Q ss_pred             ccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccccccc-CCCcccCCCccE
Q 041519          386 SLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICS-DNGVLVCNSLQE  464 (521)
Q Consensus       386 p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~-~~~~~~~p~L~~  464 (521)
                      |.+++..+++|++|+++++.....++...             ...+.+++|++|+++++ +++.++. ......+++|++
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~  391 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKNS-------------ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTS  391 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHHH-------------TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCE
T ss_pred             CHHHHhcCccccEEEccCCccccccccch-------------hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCE
Confidence            66665678889999998886554443210             01145788888888875 4554431 001335678888


Q ss_pred             EEEecCCCcccccCcCccc
Q 041519          465 IEVYNCPKLKRLSLSLPLL  483 (521)
Q Consensus       465 L~i~~C~~L~~lP~~~~~l  483 (521)
                      |++++| +++.+|..+..+
T Consensus       392 L~Ls~N-~l~~lp~~~~~~  409 (549)
T 2z81_A          392 LDISRN-TFHPMPDSCQWP  409 (549)
T ss_dssp             EECTTC-CCCCCCSCCCCC
T ss_pred             EECCCC-CCccCChhhccc
Confidence            888887 577777655443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=4.1e-21  Score=198.32  Aligned_cols=336  Identities=18%  Similarity=0.175  Sum_probs=207.1

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|.   ..+++++|++++|.+..+++..+..+++|++|++++|.....+++..|.++++|++|++++|.
T Consensus        14 ~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           14 NAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             EEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             ccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            34556667778886   447899999999999998666667999999999999985457777667999999999999999


Q ss_pred             CCcc-CccccCCcccceeecccCCCCCc-cC-C--ccCCCCCCEEEeeCCcCccc-Ccc-ccCCCCCcccccccc-----
Q 041519          213 IEVL-PNSVSDLTNLRSLLLRWCGILKR-VP-S--LAKLLALQYLDLEGTWIEEV-PEG-MEMLENLSHLSLFMA-----  280 (521)
Q Consensus       213 l~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp-~--~~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~~~~~-----  280 (521)
                      +..+ |..++++.+|++|++++|. +.. .| .  ++.+.+|++|++++|.+..+ |.. ++++++|++|++...     
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             cCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            9865 7889999999999999987 553 44 4  89999999999999998876 555 889999999988754     


Q ss_pred             -hHHHHhh--HhcccceEEEeccccchhhh------hhccCCCCCCcceeeeecCCCCCC----ccccceeeeeeeeeec
Q 041519          281 -AEEAARL--SDRLDTFVGYFSTLNDFNIY------VKSTDGRGSKNYCLLLSASGKRGF----LEVDKSVRLFACKICE  347 (521)
Q Consensus       281 -~~~i~~L--~~~L~~L~~~~~~~~~~~~~------~~~~~~l~~L~~l~~~~~~~~~~~----~~~~~~~~L~~L~i~~  347 (521)
                       +..++.+  . +|+.|++..+........      ......+.+|+.+.+.........    .......+|+.+.+.+
T Consensus       170 ~~~~l~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          170 CEEDLLNFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CTTTSGGGTTC-EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             Chhhhhccccc-cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence             3344444  3 444444433322221100      000111223333332211100000    0000002333333332


Q ss_pred             Cccc------------------ccCccccceEEEecccCcccccccccC----------CCcccccccchhhccCCCcEE
Q 041519          348 TEET------------------IVLPEDVQYLEMFGVDDVASLNDVLPR----------EQGLNLFSLRLLPALQNLEVL  399 (521)
Q Consensus       348 ~~~~------------------~~~p~~L~~L~l~~~~~l~~l~~~~~~----------~~~l~~~p~~~l~~L~~L~~L  399 (521)
                      +...                  ...++.|+.|+++++.-....+..+..          .+.+...+...+..+++|++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  328 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL  328 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence            2000                  000123444444333211111111111          122333444445778899999


Q ss_pred             EEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCc
Q 041519          400 AVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLS  479 (521)
Q Consensus       400 ~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~  479 (521)
                      +++++.- ..++..               ....+++|++|++.++ ++..+... ....+++|++|++++| +++.+|..
T Consensus       329 ~Ls~N~l-~~~~~~---------------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~  389 (455)
T 3v47_A          329 NLSQNFL-GSIDSR---------------MFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDG  389 (455)
T ss_dssp             ECCSSCC-CEECGG---------------GGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             ECCCCcc-CCcChh---------------HhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHh
Confidence            9988743 333211               1246899999999986 45555331 3446799999999997 47888764


Q ss_pred             -CcccCCCCCCCCCCceEEEee
Q 041519          480 -LPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       480 -~~~l~~~~~~~~~~L~~l~~~  500 (521)
                       +..        +++|+.|++.
T Consensus       390 ~~~~--------l~~L~~L~l~  403 (455)
T 3v47_A          390 IFDR--------LTSLQKIWLH  403 (455)
T ss_dssp             TTTT--------CTTCCEEECC
T ss_pred             Hhcc--------CCcccEEEcc
Confidence             233        4559999997

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=1.1e-20  Score=196.23  Aligned_cols=297  Identities=17%  Similarity=0.149  Sum_probs=212.5

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|..  ..+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus        15 ~v~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc
Confidence            345566677788864  34689999999999999987777799999999999998 777765556999999999999999


Q ss_pred             CCccCcc-ccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hH
Q 041519          213 IEVLPNS-VSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AE  282 (521)
Q Consensus       213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~  282 (521)
                      ++.+|.. ++++.+|++|++++|. +..+ | .+..+.+|++|++++|.+..+ |..++.+++|++|++...      +.
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             CCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            9988764 6899999999999987 5555 5 799999999999999988866 456888999999988754      34


Q ss_pred             HHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc------cCcc
Q 041519          283 EAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI------VLPE  356 (521)
Q Consensus       283 ~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~------~~p~  356 (521)
                      .++.++ +|+.|++..+.......  .....+.+|+.                       |.++++....      ....
T Consensus       171 ~l~~l~-~L~~L~l~~n~i~~~~~--~~~~~l~~L~~-----------------------L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          171 ALSHLH-GLIVLRLRHLNINAIRD--YSFKRLYRLKV-----------------------LEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             HHTTCT-TCCEEEEESCCCCEECT--TCSCSCTTCCE-----------------------EEEECCTTCCEECTTTTTTC
T ss_pred             HhcccC-CCcEEeCCCCcCcEeCh--hhcccCcccce-----------------------eeCCCCccccccCcccccCc
Confidence            578888 88888887665543221  11222334443                       3333321111      1123


Q ss_pred             ccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCcc
Q 041519          357 DVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRL  436 (521)
Q Consensus       357 ~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L  436 (521)
                      +|+.|+++++              .++.+|...+..+++|++|+|+++. +..++...               ...+++|
T Consensus       225 ~L~~L~l~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---------------~~~l~~L  274 (477)
T 2id5_A          225 NLTSLSITHC--------------NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM---------------LHELLRL  274 (477)
T ss_dssp             CCSEEEEESS--------------CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS---------------CTTCTTC
T ss_pred             cccEEECcCC--------------cccccCHHHhcCccccCeeECCCCc-CCccChhh---------------ccccccC
Confidence            6888888775              2244555556788899999998874 34443221               1457889


Q ss_pred             ceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCc-CcccCCCCCCCCCCceEEEee
Q 041519          437 KKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLS-LPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       437 ~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~-~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      +.|++.++ ++..+... ....+++|+.|++++| +++.+|.. +..        +++|+.|++.
T Consensus       275 ~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~--------l~~L~~L~l~  328 (477)
T 2id5_A          275 QEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHS--------VGNLETLILD  328 (477)
T ss_dssp             CEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSC--------GGGCCEEECC
T ss_pred             CEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCC--------CcccCEEEcc
Confidence            99999885 45555331 3345688999999988 57777763 333        3448888886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.5e-20  Score=197.61  Aligned_cols=123  Identities=19%  Similarity=0.307  Sum_probs=100.7

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+..++..+..+|....  +++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus         4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc
Confidence            34556667777886544  789999999999998886656689999999999998 777765556899999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCc--cC-CccCCCCCCEEEeeCCcCcc
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKR--VP-SLAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~~l~~  261 (521)
                      ++.+|..  .+.+|++|++++|. +..  +| .++++.+|++|++++|.+..
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch
Confidence            9988876  88999999999986 554  56 78999999999999887653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=2e-20  Score=186.06  Aligned_cols=289  Identities=18%  Similarity=0.207  Sum_probs=156.4

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      +++++|++.++.+..++. + ..+++|++|++++|. +..++.  +..+++|++|++++|.+..+| .++.+++|++|++
T Consensus        44 ~~L~~L~l~~~~i~~~~~-~-~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG-I-EYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             ccccEEEEeCCccccchh-h-hhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence            455555555555555543 2 245555555555554 444444  355555555555555555443 3555555555555


Q ss_pred             ccCCCCCccCCccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhh
Q 041519          232 RWCGILKRVPSLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNI  306 (521)
Q Consensus       232 ~~~~~l~~lp~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~  306 (521)
                      ++|. +..+|.+..+.+|++|++++| .+..+ ..++.+++|++|++..+    ...++.++ +|+.|++..+.......
T Consensus       118 ~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~  194 (347)
T 4fmz_A          118 NEDN-ISDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLT-DLYSLSLNYNQIEDISP  194 (347)
T ss_dssp             TTSC-CCCCGGGTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCT-TCSEEECTTSCCCCCGG
T ss_pred             cCCc-ccCchhhccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCC-CCCEEEccCCccccccc
Confidence            5543 444444555555555555555 22222 22555555555555433    11244555 55555554443332221


Q ss_pred             hhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEecccCcccccccccCCCcc
Q 041519          307 YVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMFGVDDVASLNDVLPREQGL  382 (521)
Q Consensus       307 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l  382 (521)
                          ...+.+|+.+.+........ .......+|+.|.++++...    ....+.|+.|+++++.-              
T Consensus       195 ----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l--------------  255 (347)
T 4fmz_A          195 ----LASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--------------  255 (347)
T ss_dssp             ----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--------------
T ss_pred             ----ccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCcc--------------
Confidence                22234444443332211111 11333446667777666321    22346788888877521              


Q ss_pred             cccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCc
Q 041519          383 NLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSL  462 (521)
Q Consensus       383 ~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L  462 (521)
                      ..++  .+..+++|++|++++| .+..++.                 ...+++|+.|++.++. +...... ....+++|
T Consensus       256 ~~~~--~~~~l~~L~~L~l~~n-~l~~~~~-----------------~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L  313 (347)
T 4fmz_A          256 SDIN--AVKDLTKLKMLNVGSN-QISDISV-----------------LNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNL  313 (347)
T ss_dssp             CCCG--GGTTCTTCCEEECCSS-CCCCCGG-----------------GGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTC
T ss_pred             CCCh--hHhcCCCcCEEEccCC-ccCCChh-----------------hcCCCCCCEEECcCCc-CCCcChh-HhhccccC
Confidence            1221  2467889999999988 3444421                 1468999999999975 4433221 23457999


Q ss_pred             cEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          463 QEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       463 ~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      ++|++++|+ ++.+|. +..        +++|++|++.
T Consensus       314 ~~L~L~~n~-l~~~~~-~~~--------l~~L~~L~l~  341 (347)
T 4fmz_A          314 TTLFLSQNH-ITDIRP-LAS--------LSKMDSADFA  341 (347)
T ss_dssp             SEEECCSSS-CCCCGG-GGG--------CTTCSEESSS
T ss_pred             CEEEccCCc-cccccC-hhh--------hhccceeehh
Confidence            999999997 666654 433        4559988876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.8e-21  Score=213.54  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCC--ccC-CccCCC-------CCCEEEeeCCcCcccCc--c
Q 041519          199 HMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILK--RVP-SLAKLL-------ALQYLDLEGTWIEEVPE--G  265 (521)
Q Consensus       199 ~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~--~lp-~~~~l~-------~L~~L~l~~~~l~~lp~--~  265 (521)
                      ++++|++|++++|.+. .+|..++++++|++|++++|..+.  .+| .++++.       +|++|++++|.+..+|.  .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            4555555555555433 445445555555555555543232  244 333332       55555555554445554  4


Q ss_pred             ccCCCCCcccccccc-----hHHHHhhHhcccceEEEeccc
Q 041519          266 MEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       266 i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      ++++++|++|++...     + .++.++ +|+.|++..+.+
T Consensus       569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~-~L~~L~Ls~N~l  607 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVRHLE-AFGTNV-KLTDLKLDYNQI  607 (876)
T ss_dssp             HTTCTTCCEEECTTSCCCBCC-CCCTTS-EESEEECCSSCC
T ss_pred             hhcCCCCCEEECCCCCcccch-hhcCCC-cceEEECcCCcc
Confidence            555555555544322     2 344444 455554444333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=4.5e-21  Score=197.56  Aligned_cols=295  Identities=15%  Similarity=0.165  Sum_probs=181.1

Q ss_pred             cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccce
Q 041519          149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRS  228 (521)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~  228 (521)
                      ..++++++|++++|.+..+| .+ ..+++|++|++++|. +..+|   ++.+++|++|++++|.++.+|  ++.+++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~-~l-~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT-GI-EKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-TG-GGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             hHcCCCCEEEccCCCcccCh-hh-cccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            44568888888888888876 34 378888888888887 66665   478888888888888888765  788888888


Q ss_pred             eecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccch
Q 041519          229 LLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDF  304 (521)
Q Consensus       229 L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~  304 (521)
                      |++++|. +..+| ++.+.+|++|++++|.++.++  ++.+++|++|++...    ...++.++ +|+.|++..+.+..+
T Consensus       111 L~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~-~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          111 LNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSFNKITEL  185 (457)
T ss_dssp             EECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCT-TCCEEECCSSCCCCC
T ss_pred             EECCCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCC-cCCEEECCCCcccee
Confidence            8888875 66676 778888888888888887764  777888888877654    11356677 888887766655443


Q ss_pred             hhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc---ccCccccceEEEecccCcccccccccCCCc
Q 041519          305 NIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET---IVLPEDVQYLEMFGVDDVASLNDVLPREQG  381 (521)
Q Consensus       305 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~---~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~  381 (521)
                      .     ...+.+|+.+.+.......  .......+|+.|.++++...   ....+.|+.|+++++.              
T Consensus       186 ~-----l~~l~~L~~L~l~~N~l~~--~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~--------------  244 (457)
T 3bz5_A          186 D-----VSQNKLLNRLNCDTNNITK--LDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP--------------  244 (457)
T ss_dssp             C-----CTTCTTCCEEECCSSCCSC--CCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC--------------
T ss_pred             c-----cccCCCCCEEECcCCcCCe--eccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc--------------
Confidence            2     3345556555544222211  12334456666766666322   1123456666665532              


Q ss_pred             ccccccchhhccC-------CCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCC
Q 041519          382 LNLFSLRLLPALQ-------NLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDN  454 (521)
Q Consensus       382 l~~~p~~~l~~L~-------~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~  454 (521)
                      +...|.+.+++|.       +|+.|++++|.....++                  ...+++|+.|++.+++.+..++.  
T Consensus       245 l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------------------~~~l~~L~~L~Ls~n~~l~~l~~--  304 (457)
T 3bz5_A          245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------------------AEGCRKIKELDVTHNTQLYLLDC--  304 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE------------------CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred             CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc------------------ccccccCCEEECCCCcccceecc--
Confidence            1222221111111       33344444443333222                  13467788888888777766664  


Q ss_pred             CcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          455 GVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       455 ~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                         .+++|+.|++++|++|+.+...-..++......+++|+.|++.
T Consensus       305 ---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~  347 (457)
T 3bz5_A          305 ---QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCV  347 (457)
T ss_dssp             ---TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECC
T ss_pred             ---CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECC
Confidence               2355566666666666555443333333223346667777776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=1.3e-21  Score=210.36  Aligned_cols=216  Identities=10%  Similarity=0.060  Sum_probs=132.4

Q ss_pred             CCCCcCCCCCCccEEEcccCcCCCC------------------CchhHhh--CCCCCcEEEccCCCCC-ccCccccCCcc
Q 041519          167 IPSNMSPHCEILSTLLLQHNKYLQR------------------IPECFFV--HMHGLKVLNLCHTSIE-VLPNSVSDLTN  225 (521)
Q Consensus       167 l~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~~~~--~l~~L~~L~L~~~~l~-~lp~~i~~L~~  225 (521)
                      +|..+. ++++|++|++++|. +..                  +|..+ +  ++++|++|++++|.+. .+|..++++++
T Consensus       198 ip~~l~-~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          198 VSKAVM-RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             ECGGGG-GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CCHHHh-cccCCCEEECcCCc-cccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            454443 67788888888877 555                  77765 5  7888888888887755 67777888888


Q ss_pred             cceeecccCCCCC--ccC-CccCC------CCCCEEEeeCCcCcccCc--cccCCCCCcccccccc------hHHHHhhH
Q 041519          226 LRSLLLRWCGILK--RVP-SLAKL------LALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA------AEEAARLS  288 (521)
Q Consensus       226 L~~L~l~~~~~l~--~lp-~~~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~------~~~i~~L~  288 (521)
                      |++|++++|..+.  .+| .++++      .+|++|++++|.++.+|.  .++++++|++|++...      + .++.++
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            8888888875344  477 66665      788888888887777877  7778888888777543      4 566777


Q ss_pred             hcccceEEEeccccchhhhhhccCCCCC-CcceeeeecCCCCCCccc--cceeeeeeeeeecCcccccCc----------
Q 041519          289 DRLDTFVGYFSTLNDFNIYVKSTDGRGS-KNYCLLLSASGKRGFLEV--DKSVRLFACKICETEETIVLP----------  355 (521)
Q Consensus       289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~p----------  355 (521)
                       +|+.|++..+.+..+...+   ..+.+ |+.+.+............  ....+|+.+.++++......|          
T Consensus       354 -~L~~L~L~~N~l~~lp~~l---~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          354 -KLASLNLAYNQITEIPANF---CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             -EESEEECCSSEEEECCTTS---EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             -CCCEEECCCCccccccHhh---hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence             7777777665554333222   23444 555555433222111111  112367777777764432222          


Q ss_pred             ---cccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecc
Q 041519          356 ---EDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYC  404 (521)
Q Consensus       356 ---~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c  404 (521)
                         ..|+.|+++++              .+..+|...+..+++|++|+++++
T Consensus       430 ~~~~~L~~L~Ls~N--------------~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          430 FKGINVSSINLSNN--------------QISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CCCCCEEEEECCSS--------------CCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             ccCCCCCEEECcCC--------------ccCcCCHHHHccCCCCCEEECCCC
Confidence               25666666554              223344444444555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=5.5e-20  Score=196.95  Aligned_cols=156  Identities=21%  Similarity=0.212  Sum_probs=129.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .....+..+..+|...  .+.+++|++++|.++.+++..+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus        16 ~~~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EEECTTSCCSSCCTTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCCcccCcCCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCc
Confidence            3455666777788643  4589999999999999977777799999999999998 766765556999999999999999


Q ss_pred             CCcc-CccccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCccc--CccccCCCCCcccccccc------h
Q 041519          213 IEVL-PNSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEV--PEGMEMLENLSHLSLFMA------A  281 (521)
Q Consensus       213 l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~~~~~------~  281 (521)
                      +..+ |..++.+.+|++|++++|. +..+ | .++++.+|++|++++|.+..+  |. +..+++|++|++...      +
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECH
T ss_pred             ccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccCh
Confidence            9855 7789999999999999986 7776 5 799999999999999988876  44 445999999988754      5


Q ss_pred             HHHHhhHhcccce
Q 041519          282 EEAARLSDRLDTF  294 (521)
Q Consensus       282 ~~i~~L~~~L~~L  294 (521)
                      ..++.++ +|+.+
T Consensus       171 ~~~~~l~-~L~~l  182 (606)
T 3t6q_A          171 EDMSSLQ-QATNL  182 (606)
T ss_dssp             HHHHTTT-TCCSE
T ss_pred             hhhhhhc-cccee
Confidence            6788999 99843

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=1.6e-20  Score=186.76  Aligned_cols=290  Identities=21%  Similarity=0.222  Sum_probs=218.8

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ..+...+..+..++. ...++++++|++.+|.+..++.  +..+++|++|++++|. +..++.  +..+++|++|++++|
T Consensus        47 ~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           47 TKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNED  120 (347)
T ss_dssp             SEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECTTS
T ss_pred             cEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECcCC
Confidence            345556666666764 5678899999999999999887  4589999999999997 777764  689999999999999


Q ss_pred             CCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhh
Q 041519          212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARL  287 (521)
Q Consensus       212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L  287 (521)
                      .+..+|. +..+++|++|++++|.....++.+..+.+|++|++++|.+..++. ++.+++|++|++..+    ...+..+
T Consensus       121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l  198 (347)
T 4fmz_A          121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASL  198 (347)
T ss_dssp             CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGC
T ss_pred             cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCC
Confidence            9998877 899999999999999877777789999999999999999888776 889999999988765    2237788


Q ss_pred             HhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEE
Q 041519          288 SDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEM  363 (521)
Q Consensus       288 ~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l  363 (521)
                      + +|+.|++..+.......    ...+.+|+.+.+......... ......+|+.|.++++...    ...+++|+.|++
T Consensus       199 ~-~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          199 T-SLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV  272 (347)
T ss_dssp             T-TCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             C-ccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence            8 99999887766554332    334667777666433222111 1455668999998887332    233568888888


Q ss_pred             ecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCC
Q 041519          364 FGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLED  443 (521)
Q Consensus       364 ~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  443 (521)
                      +++.-              ..++  .+..+++|++|++++|......+..                ...+++|++|++.+
T Consensus       273 ~~n~l--------------~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----------------l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          273 GSNQI--------------SDIS--VLNNLSQLNSLFLNNNQLGNEDMEV----------------IGGLTNLTTLFLSQ  320 (347)
T ss_dssp             CSSCC--------------CCCG--GGGGCTTCSEEECCSSCCCGGGHHH----------------HHTCTTCSEEECCS
T ss_pred             cCCcc--------------CCCh--hhcCCCCCCEEECcCCcCCCcChhH----------------hhccccCCEEEccC
Confidence            77621              2222  3578999999999999644333221                14589999999999


Q ss_pred             cccccccccCCCcccCCCccEEEEecCC
Q 041519          444 LREFKSICSDNGVLVCNSLQEIEVYNCP  471 (521)
Q Consensus       444 ~~~L~~~~~~~~~~~~p~L~~L~i~~C~  471 (521)
                      ++ +..++.   ...+++|++|++.+|+
T Consensus       321 n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          321 NH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             SS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             Cc-cccccC---hhhhhccceeehhhhc
Confidence            86 665543   3467999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.2e-20  Score=201.48  Aligned_cols=293  Identities=15%  Similarity=0.163  Sum_probs=200.2

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCccccee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSL  229 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L  229 (521)
                      +.+++.+++.++.+..+|..++..+++|++|++++|. +..+++..|+.+++|++|++++|.+..+|. .++.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            4678888888888888888877778888888888887 777776556888888888888888886654 46788888888


Q ss_pred             ecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc---hHHHHhhHhcccceEEEeccccc
Q 041519          230 LLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA---AEEAARLSDRLDTFVGYFSTLND  303 (521)
Q Consensus       230 ~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~---~~~i~~L~~~L~~L~~~~~~~~~  303 (521)
                      ++++|. +..+| . ++.+.+|++|++++|.+..++. .++.+++|++|++...   ...++.++ +|+.|++..+....
T Consensus       129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCT-TCSEEECCSSCCSE
T ss_pred             EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhh-hhhhhhcccCcccc
Confidence            888875 77777 4 5888888888888888876654 5888888888887754   22356677 78888776554432


Q ss_pred             hhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEecccCcccccccccCC
Q 041519          304 FNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMFGVDDVASLNDVLPRE  379 (521)
Q Consensus       304 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~~~~~l~~l~~~~~~~  379 (521)
                      +       ....+|+.+.+.....  .........+|+.|.++++...    ....+.|+.|+++++.            
T Consensus       207 l-------~~~~~L~~L~ls~n~l--~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~------------  265 (597)
T 3oja_B          207 L-------AIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE------------  265 (597)
T ss_dssp             E-------ECCTTCSEEECCSSCC--CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC------------
T ss_pred             c-------cCCchhheeeccCCcc--cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc------------
Confidence            1       1223444444332111  1111111236667776666321    1224567777766542            


Q ss_pred             CcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccC
Q 041519          380 QGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVC  459 (521)
Q Consensus       380 ~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~  459 (521)
                        +...+...+..+++|++|+|+++ .+..++...                ..+|+|+.|+++++ .+..++.  ....+
T Consensus       266 --l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~----------------~~l~~L~~L~Ls~N-~l~~i~~--~~~~l  323 (597)
T 3oja_B          266 --LEKIMYHPFVKMQRLERLYISNN-RLVALNLYG----------------QPIPTLKVLDLSHN-HLLHVER--NQPQF  323 (597)
T ss_dssp             --CCEEESGGGTTCSSCCEEECTTS-CCCEEECSS----------------SCCTTCCEEECCSS-CCCCCGG--GHHHH
T ss_pred             --cCCCCHHHhcCccCCCEEECCCC-CCCCCCccc----------------ccCCCCcEEECCCC-CCCccCc--ccccC
Confidence              23333334577889999999887 344443222                46899999999986 4667765  45567


Q ss_pred             CCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          460 NSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       460 p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      ++|+.|++++|. +..+|..          .+++|+.|++.
T Consensus       324 ~~L~~L~L~~N~-l~~~~~~----------~~~~L~~L~l~  353 (597)
T 3oja_B          324 DRLENLYLDHNS-IVTLKLS----------THHTLKNLTLS  353 (597)
T ss_dssp             TTCSEEECCSSC-CCCCCCC----------TTCCCSEEECC
T ss_pred             CCCCEEECCCCC-CCCcChh----------hcCCCCEEEee
Confidence            999999999986 6666532          36679999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=4.6e-20  Score=197.54  Aligned_cols=137  Identities=19%  Similarity=0.220  Sum_probs=103.8

Q ss_pred             EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence            44445555555554 55677889999999999888877666788999999999888 66665444588999999999999


Q ss_pred             CCCccC-ccccCCcccceeecccCCCCC--ccC-CccCCCCCCEEEeeCCcCcccC-ccccCCCC
Q 041519          212 SIEVLP-NSVSDLTNLRSLLLRWCGILK--RVP-SLAKLLALQYLDLEGTWIEEVP-EGMEMLEN  271 (521)
Q Consensus       212 ~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~  271 (521)
                      .+..+| ..++++.+|++|++++|. +.  .+| .++++.+|++|++++|.++.++ ..++.+.+
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  178 (606)
T 3vq2_A          115 KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE  178 (606)
T ss_dssp             CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred             ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence            888665 678889999999999886 54  467 7888999999999888777653 33444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=4.7e-20  Score=195.06  Aligned_cols=168  Identities=20%  Similarity=0.245  Sum_probs=139.3

Q ss_pred             EEEecCcccccC-CCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKF-PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..+ |.....++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC
Confidence            344455555554 4556778999999999999999987777799999999999998 88888876799999999999999


Q ss_pred             CCCc--cCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc-cCccccCCCCCcccccccc-----h
Q 041519          212 SIEV--LPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE-VPEGMEMLENLSHLSLFMA-----A  281 (521)
Q Consensus       212 ~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~~~~~-----~  281 (521)
                      .+..  .|..++++.+|++|++++|..+..+|  .++++.+|++|++++|.+.. .|..++.+++|++|++...     +
T Consensus       109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  188 (549)
T 2z81_A          109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL  188 (549)
T ss_dssp             CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred             cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence            9884  57789999999999999998788887  69999999999999998875 7888999999999987644     2


Q ss_pred             HH-HHhhHhcccceEEEecccc
Q 041519          282 EE-AARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       282 ~~-i~~L~~~L~~L~~~~~~~~  302 (521)
                      .. ++.++ +|+.|++..+...
T Consensus       189 ~~~~~~l~-~L~~L~L~~n~l~  209 (549)
T 2z81_A          189 EIFADILS-SVRYLELRDTNLA  209 (549)
T ss_dssp             HHHHHSTT-TBSEEEEESCBCT
T ss_pred             hhhHhhcc-cccEEEccCCccc
Confidence            22 35578 8998888765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.7e-19  Score=187.97  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=121.7

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeeccc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRW  233 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~  233 (521)
                      ++++++++.++.+|..++   ++|++|++++|. +..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            689999999999998875   899999999998 7888766679999999999999999966 78899999999999999


Q ss_pred             CCCCCccCCccCCCCCCEEEeeCCcCcc--cCccccCCCCCcccccccc---hHHHHhhHhcc--cceEEEeccc
Q 041519          234 CGILKRVPSLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFMA---AEEAARLSDRL--DTFVGYFSTL  301 (521)
Q Consensus       234 ~~~l~~lp~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~---~~~i~~L~~~L--~~L~~~~~~~  301 (521)
                      |. +..+|.. .+.+|++|++++|.+..  +|..++++++|++|++...   ...++.++ +|  +.|++..+..
T Consensus        79 N~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           79 NK-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA-HLNISKVLLVLGET  150 (520)
T ss_dssp             SC-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGT-TSCEEEEEEEECTT
T ss_pred             Cc-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccc-cceeeEEEeecccc
Confidence            86 8899933 89999999999998885  6789999999999998765   45577788 88  8888776544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=6.3e-20  Score=194.89  Aligned_cols=138  Identities=20%  Similarity=0.236  Sum_probs=111.8

Q ss_pred             EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc
Confidence            34445555555543 45667899999999999999988777789999999999998 77787666799999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCc--cC-CccCCCCCCEEEeeCCcCcccC-ccccCCCCC
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKR--VP-SLAKLLALQYLDLEGTWIEEVP-EGMEMLENL  272 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L  272 (521)
                      .+..+|. .++++.+|++|++++|. +..  +| .++++.+|++|++++|.+..++ ..++.+++|
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          111 NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            9988775 68899999999999986 554  68 7999999999999999888664 446666666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.2e-20  Score=201.37  Aligned_cols=272  Identities=13%  Similarity=0.135  Sum_probs=204.8

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ  250 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~  250 (521)
                      .+++++.+++.+|. +..+|..+|+.+++|++|++++|.+..+| ..++.+.+|++|++++|. +..+|  .++.+.+|+
T Consensus        49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence            46889999999998 89999998899999999999999999765 589999999999999987 77776  579999999


Q ss_pred             EEEeeCCcCcccCcc-ccCCCCCcccccccc------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeee
Q 041519          251 YLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL  323 (521)
Q Consensus       251 ~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~  323 (521)
                      +|++++|.+..+|.. ++.+++|++|++...      +..++.++ +|+.|++..+.+....     ...+.+|..+.+.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~  200 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD-----LSLIPSLFHANVS  200 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCC-----GGGCTTCSEEECC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcC-----hhhhhhhhhhhcc
Confidence            999999999999887 489999999998765      45688999 9999998776654431     2235556665543


Q ss_pred             ecCCCCCCccccceeeeeeeeeecCcc---cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEE
Q 041519          324 SASGKRGFLEVDKSVRLFACKICETEE---TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLA  400 (521)
Q Consensus       324 ~~~~~~~~~~~~~~~~L~~L~i~~~~~---~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~  400 (521)
                      .....  .  ......|+.|.++++..   ....+..|+.|+++++.-              ...  ..+..+++|++|+
T Consensus       201 ~n~l~--~--l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l--------------~~~--~~l~~l~~L~~L~  260 (597)
T 3oja_B          201 YNLLS--T--LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--------------TDT--AWLLNYPGLVEVD  260 (597)
T ss_dssp             SSCCS--E--EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC--------------CCC--GGGGGCTTCSEEE
T ss_pred             cCccc--c--ccCCchhheeeccCCcccccccccCCCCCEEECCCCCC--------------CCC--hhhccCCCCCEEE
Confidence            22111  1  11223677777777633   223456788888776522              111  2357899999999


Q ss_pred             EecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC
Q 041519          401 VGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL  480 (521)
Q Consensus       401 L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~  480 (521)
                      |+++......+.                ....+++|+.|++.++ .+..++.  ....+|+|+.|++++|. +..+|..+
T Consensus       261 Ls~N~l~~~~~~----------------~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~~~~  320 (597)
T 3oja_B          261 LSYNELEKIMYH----------------PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVERNQ  320 (597)
T ss_dssp             CCSSCCCEEESG----------------GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred             CCCCccCCCCHH----------------HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCCC-CCccCccc
Confidence            998854332222                1256899999999994 6777776  44567999999999985 77898877


Q ss_pred             cccCCCCCCCCCCceEEEeeh
Q 041519          481 PLLDNGQPSPPPALEVIEIKK  501 (521)
Q Consensus       481 ~~l~~~~~~~~~~L~~l~~~~  501 (521)
                      ..+.+        |+.|++..
T Consensus       321 ~~l~~--------L~~L~L~~  333 (597)
T 3oja_B          321 PQFDR--------LENLYLDH  333 (597)
T ss_dssp             HHHTT--------CSEEECCS
T ss_pred             ccCCC--------CCEEECCC
Confidence            65555        99999983

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=3.2e-20  Score=203.94  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             cCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          432 TLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       432 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      .+++|+.|+++++.--..++.  ....+++|+.|++++|.--..+|..+..+++        |+.|++.
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~--------L~~L~ls  712 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRIPQAMSALTM--------LTEIDLS  712 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECCCGGGGGCCC--------CSEEECC
T ss_pred             ccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcCChHHhCCCC--------CCEEECc
Confidence            455555555555332224444  3334456666666665543455555544444        7777766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=1.7e-19  Score=186.74  Aligned_cols=304  Identities=15%  Similarity=0.187  Sum_probs=135.9

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      +++.|++.++.+..+|. + ..+++|++|++++|. +..+++  ++.+++|++|++++|.+..++. ++++++|++|+++
T Consensus        47 ~l~~L~l~~~~i~~l~~-~-~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDG-V-EYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             cccEEecCCCCCccCcc-h-hhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence            45555555555544442 1 244555555555554 444444  3455555555555555544443 4555555555555


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCc--------------------cccCCCCCcccccccc----hHHHHhhH
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--------------------GMEMLENLSHLSLFMA----AEEAARLS  288 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~~~~~----~~~i~~L~  288 (521)
                      +|. +..+|.+.++.+|++|++++|.+..+|.                    .++++++|++|++...    ...+..++
T Consensus       121 ~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~  199 (466)
T 1o6v_A          121 NNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  199 (466)
T ss_dssp             SSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             CCC-CCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCC
Confidence            543 4444444455555555555554444432                    1444444444444332    12244444


Q ss_pred             hcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEe
Q 041519          289 DRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMF  364 (521)
Q Consensus       289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~  364 (521)
                       +|+.|++..+.......    ...+.+|+.+.+........ .......+|+.|.++++...    ....+.|+.|+++
T Consensus       200 -~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  273 (466)
T 1o6v_A          200 -NLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG  273 (466)
T ss_dssp             -TCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             -CCCEEEecCCccccccc----ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence             45555444333322211    11233444443332111110 11223345555555554221    1123455555555


Q ss_pred             cccCcccccccccCC----------CcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCC
Q 041519          365 GVDDVASLNDVLPRE----------QGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLP  434 (521)
Q Consensus       365 ~~~~l~~l~~~~~~~----------~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~  434 (521)
                      ++.- ..++. +..+          +.+..++.  +..+++|++|++++|. +..++.                 ...++
T Consensus       274 ~n~l-~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-----------------~~~l~  331 (466)
T 1o6v_A          274 ANQI-SNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN-ISDISP-----------------VSSLT  331 (466)
T ss_dssp             SSCC-CCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC-CSCCGG-----------------GGGCT
T ss_pred             CCcc-Ccccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc-CCCchh-----------------hccCc
Confidence            4421 11110 1111          11111111  3445555555555552 222111                 13467


Q ss_pred             ccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehhhcc
Q 041519          435 RLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWE  505 (521)
Q Consensus       435 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~~~~  505 (521)
                      +|+.|++.++ .+..++   ....+++|+.|++++|. +..++. +..        +++|+.|.+...-|.
T Consensus       332 ~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~-~~~--------l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          332 KLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLTP-LAN--------LTRITQLGLNDQAWT  388 (466)
T ss_dssp             TCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCGG-GTT--------CTTCCEEECCCEEEE
T ss_pred             cCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccch-hhc--------CCCCCEEeccCCccc
Confidence            7777777775 455442   23356777777777775 344332 322        556888888733333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=5.7e-19  Score=182.81  Aligned_cols=304  Identities=15%  Similarity=0.191  Sum_probs=204.7

Q ss_pred             ecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc
Q 041519          136 TAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV  215 (521)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~  215 (521)
                      ..+..+..+|. ...++++++|++++|.+..+++  +..+++|++|++++|. +..+++  ++++++|++|++++|.+..
T Consensus        53 l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~  126 (466)
T 1o6v_A           53 ADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITD  126 (466)
T ss_dssp             CCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCC
Confidence            34445555553 4556788888888888887776  3478888888888887 666666  5788888888888888777


Q ss_pred             cCccccCCcccceeecccCCCCCccC---------------------CccCCCCCCEEEeeCCcCcccCccccCCCCCcc
Q 041519          216 LPNSVSDLTNLRSLLLRWCGILKRVP---------------------SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSH  274 (521)
Q Consensus       216 lp~~i~~L~~L~~L~l~~~~~l~~lp---------------------~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~  274 (521)
                      +|. ++.+++|++|++++|. +..+|                     .++++.+|++|++++|.+..++. +..+++|++
T Consensus       127 ~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  203 (466)
T 1o6v_A          127 IDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLES  203 (466)
T ss_dssp             CGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred             ChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCE
Confidence            765 7778888888887764 44433                     35677889999999998888764 888999999


Q ss_pred             cccccc----hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcc
Q 041519          275 LSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEE  350 (521)
Q Consensus       275 L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~  350 (521)
                      |++...    ...++.++ +|+.|++..+.....    .....+.+|+.+.+........ .....+.+|+.|.++++..
T Consensus       204 L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          204 LIATNNQISDITPLGILT-NLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI  277 (466)
T ss_dssp             EECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCC
T ss_pred             EEecCCcccccccccccC-CCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCcc
Confidence            988765    22377889 999999877766543    2234466777776653322211 1244456788888877733


Q ss_pred             c----ccCccccceEEEecccCcccccc---------cccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcch
Q 041519          351 T----IVLPEDVQYLEMFGVDDVASLND---------VLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEE  417 (521)
Q Consensus       351 ~----~~~p~~L~~L~l~~~~~l~~l~~---------~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~  417 (521)
                      .    ....+.|+.|+++++. +..++.         +--..+.+...+.  +..+++|++|++++|. +..++.     
T Consensus       278 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-----  348 (466)
T 1o6v_A          278 SNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDVSS-----  348 (466)
T ss_dssp             CCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC-CCCCGG-----
T ss_pred             CccccccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc-cCCchh-----
Confidence            2    2234678888887763 222211         1111122232222  4789999999999884 444321     


Q ss_pred             hhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC
Q 041519          418 TEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL  480 (521)
Q Consensus       418 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~  480 (521)
                                  ...+++|+.|++.++. +..+..   ...+++|+.|++.+|+ +..+|...
T Consensus       349 ------------l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-~~~~p~~~  394 (466)
T 1o6v_A          349 ------------LANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA-WTNAPVNY  394 (466)
T ss_dssp             ------------GTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE-EECCCBCC
T ss_pred             ------------hccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc-ccCCchhh
Confidence                        1468999999999975 555443   3467999999999986 56666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=1.8e-19  Score=198.03  Aligned_cols=318  Identities=18%  Similarity=0.099  Sum_probs=174.1

Q ss_pred             cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccc
Q 041519          149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLR  227 (521)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~  227 (521)
                      ..++++++|++++|.+....+. +..+++|++|++++|.....+|.. ++.+++|++|++++|.+. .+|..  .+.+|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~  272 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQ  272 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence            3456677777777776654444 346777777777777632334443 367777777777777766 33432  667777


Q ss_pred             eeecccCCCCCccC-CccCC-CCCCEEEeeCCcCc-ccCccccCCCCCcccccccc------hHH-HHhhHhcccceEEE
Q 041519          228 SLLLRWCGILKRVP-SLAKL-LALQYLDLEGTWIE-EVPEGMEMLENLSHLSLFMA------AEE-AARLSDRLDTFVGY  297 (521)
Q Consensus       228 ~L~l~~~~~l~~lp-~~~~l-~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~------~~~-i~~L~~~L~~L~~~  297 (521)
                      +|++++|.....+| .++.+ .+|++|++++|.+. .+|..++++++|++|++..+      +.. ++.++ +|++|++.
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~-~L~~L~Ls  351 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDLS  351 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT-TCCEEECC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC-CCCEEeCc
Confidence            77777765333666 55554 77777777777665 56777777777777777543      333 77777 77777775


Q ss_pred             ecccc-chhhhhhccCCCCCCcceeeeecCCC---CCCccccceeeeeeeeeecCcccccC------ccccceEEEeccc
Q 041519          298 FSTLN-DFNIYVKSTDGRGSKNYCLLLSASGK---RGFLEVDKSVRLFACKICETEETIVL------PEDVQYLEMFGVD  367 (521)
Q Consensus       298 ~~~~~-~~~~~~~~~~~l~~L~~l~~~~~~~~---~~~~~~~~~~~L~~L~i~~~~~~~~~------p~~L~~L~l~~~~  367 (521)
                      .+... .....+....  .+|+.+.+......   ..........+|+.|.+.++......      .+.|+.|+++++.
T Consensus       352 ~n~l~~~~p~~l~~l~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  429 (768)
T 3rgz_A          352 FNEFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY  429 (768)
T ss_dssp             SSEEEECCCTTHHHHT--TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CCccCccccHHHHhhh--cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence            55443 1222222111  13444333211100   00000011234555655555322111      2345666665543


Q ss_pred             CcccccccccCCC----------ccc-ccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCcc
Q 041519          368 DVASLNDVLPREQ----------GLN-LFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRL  436 (521)
Q Consensus       368 ~l~~l~~~~~~~~----------~l~-~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L  436 (521)
                      -...++..+..+.          .+. .+|.. +..+++|++|++++|.....++..                ...+++|
T Consensus       430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~----------------l~~l~~L  492 (768)
T 3rgz_A          430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSG----------------LSNCTNL  492 (768)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGG----------------GGGCTTC
T ss_pred             ccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHH----------------HhcCCCC
Confidence            2111121111111          111 12222 245666666666666433333221                2457788


Q ss_pred             ceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          437 KKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       437 ~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      ++|++.++.-...++.  ....+++|+.|++++|.-...+|..+..+++        |+.|++.
T Consensus       493 ~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--------L~~L~Ls  546 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRS--------LIWLDLN  546 (768)
T ss_dssp             CEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTT--------CCEEECC
T ss_pred             CEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCC--------CCEEECC
Confidence            8888887654435554  4445688888888888765577777665554        8888876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=5.9e-20  Score=185.72  Aligned_cols=276  Identities=13%  Similarity=0.142  Sum_probs=204.9

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ  250 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~  250 (521)
                      .++++++|++.++. +..+|..+|..+++|++|++++|.+..++ ..++.+.+|++|++++|. +..+|  .++++.+|+
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence            56899999999998 99999998899999999999999999776 488999999999999986 77775  589999999


Q ss_pred             EEEeeCCcCcccCccc-cCCCCCcccccccc------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeee
Q 041519          251 YLDLEGTWIEEVPEGM-EMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL  323 (521)
Q Consensus       251 ~L~l~~~~l~~lp~~i-~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~  323 (521)
                      +|++++|.++.+|.++ +++++|++|++...      +..++.++ +|++|++..+......     ...+.+|+.+.+.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~  194 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD-----LSLIPSLFHANVS  194 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-TCCEEECCSSCCSBCC-----GGGCTTCSEEECC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-CCCEEECCCCcCCccc-----cccccccceeecc
Confidence            9999999999999874 88999999998754      44578889 9999988776654431     2335556655543


Q ss_pred             ecCCCCCCccccceeeeeeeeeecCcc---cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEE
Q 041519          324 SASGKRGFLEVDKSVRLFACKICETEE---TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLA  400 (521)
Q Consensus       324 ~~~~~~~~~~~~~~~~L~~L~i~~~~~---~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~  400 (521)
                      .....  .  ......|+.+.++++..   ....++.|+.|++.++.-              ...  ..+..+++|++|+
T Consensus       195 ~n~l~--~--~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l--------------~~~--~~l~~l~~L~~L~  254 (390)
T 3o6n_A          195 YNLLS--T--LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--------------TDT--AWLLNYPGLVEVD  254 (390)
T ss_dssp             SSCCS--E--EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC--------------CCC--GGGGGCTTCSEEE
T ss_pred             ccccc--c--cCCCCcceEEECCCCeeeeccccccccccEEECCCCCC--------------ccc--HHHcCCCCccEEE
Confidence            22111  1  11223677777776632   223356788887776521              222  2357899999999


Q ss_pred             EecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC
Q 041519          401 VGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL  480 (521)
Q Consensus       401 L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~  480 (521)
                      ++++.. ..++..               ....+++|+.|++.++ +++.++.  ....+|+|++|++++| +++.+|..+
T Consensus       255 Ls~n~l-~~~~~~---------------~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~  314 (390)
T 3o6n_A          255 LSYNEL-EKIMYH---------------PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQ  314 (390)
T ss_dssp             CCSSCC-CEEESG---------------GGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred             CCCCcC-CCcChh---------------HccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCccc
Confidence            998843 333211               1246899999999995 6777766  4456799999999999 588898876


Q ss_pred             cccCCCCCCCCCCceEEEeehhhcc
Q 041519          481 PLLDNGQPSPPPALEVIEIKKELWE  505 (521)
Q Consensus       481 ~~l~~~~~~~~~~L~~l~~~~~~~~  505 (521)
                      ..+++        |+.|++...-..
T Consensus       315 ~~l~~--------L~~L~L~~N~i~  331 (390)
T 3o6n_A          315 PQFDR--------LENLYLDHNSIV  331 (390)
T ss_dssp             HHHTT--------CSEEECCSSCCC
T ss_pred             cccCc--------CCEEECCCCccc
Confidence            55555        999999843333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=3.2e-19  Score=189.19  Aligned_cols=124  Identities=19%  Similarity=0.293  Sum_probs=104.3

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ..+...+..+..+|...  .+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC
Confidence            35566777788888754  3789999999999999987767799999999999998 77776666699999999999999


Q ss_pred             CCCccCccccCCcccceeecccCCCCCcc--C-CccCCCCCCEEEeeCCcCcc
Q 041519          212 SIEVLPNSVSDLTNLRSLLLRWCGILKRV--P-SLAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~l--p-~~~~l~~L~~L~l~~~~l~~  261 (521)
                      .++.+|..  .+.+|++|++++|. +..+  | .++++.+|++|++++|.+..
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc
Confidence            99999986  89999999999986 6664  4 68999999999999987764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=9.8e-19  Score=194.08  Aligned_cols=167  Identities=24%  Similarity=0.259  Sum_probs=139.6

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ......+..+..+|.   ..+++++|++++|.++.+++..+..+++|++|++++|.....+++..|+++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            345667778888887   56899999999999999877777799999999999997677886666799999999999999


Q ss_pred             CCCcc-CccccCCcccceeecccCCCCCccC-C--ccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc-----
Q 041519          212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP-S--LAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA-----  280 (521)
Q Consensus       212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~--~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~-----  280 (521)
                      .+..+ |..++++.+|++|++++|.....+| .  ++++.+|++|++++|.+..++  ..++++++|++|++...     
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            99965 8899999999999999987444455 4  999999999999999888653  56999999999998754     


Q ss_pred             -hHHHHhh--HhcccceEEEecccc
Q 041519          281 -AEEAARL--SDRLDTFVGYFSTLN  302 (521)
Q Consensus       281 -~~~i~~L--~~~L~~L~~~~~~~~  302 (521)
                       +..++.+  + +|+.|++..+...
T Consensus       164 ~~~~l~~l~~~-~L~~L~L~~n~l~  187 (844)
T 3j0a_A          164 CEHELEPLQGK-TLSFFSLAANSLY  187 (844)
T ss_dssp             CSGGGHHHHHC-SSCCCEECCSBSC
T ss_pred             CHHHcccccCC-ccceEECCCCccc
Confidence             4566666  7 8999988766543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=5e-19  Score=192.11  Aligned_cols=166  Identities=23%  Similarity=0.269  Sum_probs=136.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .....+..+..+|...  .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus         8 ~~~cs~~~L~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSSCCSCS--CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCcccccccc--CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc
Confidence            3455666777888643  3789999999999999998777799999999999998 777766667999999999999999


Q ss_pred             CCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hH
Q 041519          213 IEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AE  282 (521)
Q Consensus       213 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~  282 (521)
                      ++.+|. +++.+.+|++|++++|. +..+|  .++++.+|++|++++|.+... |..++++++|++|++...      +.
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            998886 58999999999999986 67776  699999999999999988765 556889999999988754      33


Q ss_pred             HHH--hhHhcccceEEEeccccc
Q 041519          283 EAA--RLSDRLDTFVGYFSTLND  303 (521)
Q Consensus       283 ~i~--~L~~~L~~L~~~~~~~~~  303 (521)
                      .++  .++ +|+.|++..+....
T Consensus       164 ~~~~~~~~-~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          164 ELDIFANS-SLKKLELSSNQIKE  185 (680)
T ss_dssp             HHGGGTTC-EESEEECTTCCCCC
T ss_pred             Hhhccccc-cccEEECCCCcccc
Confidence            443  447 89999886655443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=9.7e-19  Score=187.24  Aligned_cols=318  Identities=17%  Similarity=0.103  Sum_probs=168.1

Q ss_pred             ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCc--EEEccCCCCCccCccccCCc-
Q 041519          148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLK--VLNLCHTSIEVLPNSVSDLT-  224 (521)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~l~~lp~~i~~L~-  224 (521)
                      ...++++++|++++|.+..++...+..+++|++|++++|. +..+++..++.+++|+  .|++++|.+..++....... 
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~  203 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV  203 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence            3445566666666666665432222246666666666665 5555444456666666  66666666654433222221 


Q ss_pred             ---------------------------------------------------ccceeecccCCCCCccC--CccCCCCCCE
Q 041519          225 ---------------------------------------------------NLRSLLLRWCGILKRVP--SLAKLLALQY  251 (521)
Q Consensus       225 ---------------------------------------------------~L~~L~l~~~~~l~~lp--~~~~l~~L~~  251 (521)
                                                                         +|++|++++|. +..++  .++.+.+|++
T Consensus       204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  282 (606)
T 3t6q_A          204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQE  282 (606)
T ss_dssp             EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSE
T ss_pred             ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCE
Confidence                                                               45555555553 55555  4788889999


Q ss_pred             EEeeCCcCcccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEeccccc-hhhhhhccCCCCCCcceeeee
Q 041519          252 LDLEGTWIEEVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLND-FNIYVKSTDGRGSKNYCLLLS  324 (521)
Q Consensus       252 L~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~  324 (521)
                      |++++|.++.+|.+++.+++|++|++...      +..++.++ +|++|++..+.... ...  .....+.+|+.+.+..
T Consensus       283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~  359 (606)
T 3t6q_A          283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGT--GCLENLENLRELDLSH  359 (606)
T ss_dssp             EECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCS--STTTTCTTCCEEECCS
T ss_pred             EeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccch--hhhhccCcCCEEECCC
Confidence            99999988888888888889998888754      45677888 88888876554321 111  1133455666665543


Q ss_pred             cCCCCC---CccccceeeeeeeeeecCcccc------cCccccceEEEecccCccccc-ccccC----------CCcccc
Q 041519          325 ASGKRG---FLEVDKSVRLFACKICETEETI------VLPEDVQYLEMFGVDDVASLN-DVLPR----------EQGLNL  384 (521)
Q Consensus       325 ~~~~~~---~~~~~~~~~L~~L~i~~~~~~~------~~p~~L~~L~l~~~~~l~~l~-~~~~~----------~~~l~~  384 (521)
                      ......   ........+|+.|.++++....      ...+.|+.|+++++.-....+ ..+..          .+.+..
T Consensus       360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  439 (606)
T 3t6q_A          360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI  439 (606)
T ss_dssp             SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred             CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence            222111   1123344567777776663221      123567777766543211100 00111          111222


Q ss_pred             cccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccE
Q 041519          385 FSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQE  464 (521)
Q Consensus       385 ~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~  464 (521)
                      .+...+..+++|++|+++++......+..             ......+++|++|++.++. +..+... ....+++|++
T Consensus       440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~  504 (606)
T 3t6q_A          440 SSEQLFDGLPALQHLNLQGNHFPKGNIQK-------------TNSLQTLGRLEILVLSFCD-LSSIDQH-AFTSLKMMNH  504 (606)
T ss_dssp             TCTTTTTTCTTCCEEECTTCBCGGGEECS-------------SCGGGGCTTCCEEECTTSC-CCEECTT-TTTTCTTCCE
T ss_pred             cCHHHHhCCCCCCEEECCCCCCCcccccc-------------chhhccCCCccEEECCCCc-cCccChh-hhccccCCCE
Confidence            22233355666666666655332211100             0011346677777777653 4443221 2334567777


Q ss_pred             EEEecCCCcccccCcCcccCC
Q 041519          465 IEVYNCPKLKRLSLSLPLLDN  485 (521)
Q Consensus       465 L~i~~C~~L~~lP~~~~~l~~  485 (521)
                      |++++|.--...|..+..+++
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~  525 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKG  525 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCS
T ss_pred             EECCCCccCcCChhHhCcccc
Confidence            777776433334444444333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=3.3e-18  Score=181.36  Aligned_cols=142  Identities=18%  Similarity=0.213  Sum_probs=121.6

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeec
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLL  231 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l  231 (521)
                      ..++++++++.++.+|..++   +++++|++++|. +..+++..|+++++|++|++++|.++.+ |..++.+.+|++|++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC---TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCccCCCCCC---CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            45899999999999998765   799999999998 8888876679999999999999999976 678999999999999


Q ss_pred             ccCCCCCccCCccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc---hHHHHhhHhcc--cceEEEeccc
Q 041519          232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA---AEEAARLSDRL--DTFVGYFSTL  301 (521)
Q Consensus       232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~---~~~i~~L~~~L--~~L~~~~~~~  301 (521)
                      ++|. +..+|.. .+.+|++|++++|.+..+|  ..++++++|++|++...   ...++.++ +|  +.|++..+..
T Consensus       108 s~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA-HLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGT-TSCEEEEEEEESSC
T ss_pred             CCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhh-hceeeEEEeecccc
Confidence            9986 8899933 8999999999999998765  78999999999998765   34566777 77  7887766544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=8.8e-19  Score=188.29  Aligned_cols=141  Identities=23%  Similarity=0.271  Sum_probs=118.1

Q ss_pred             EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      ...+..+..+|..  ..+++++|++++|.++.+++..|..+++|++|++++|. +..++++.|+++++|++|+|++|.++
T Consensus        37 ~c~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           37 QCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             ECTTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             ECCCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCC
Confidence            3455677788864  34589999999999999998877799999999999998 88888877799999999999999999


Q ss_pred             ccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc--cCccccCCCCCccccccc
Q 041519          215 VLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFM  279 (521)
Q Consensus       215 ~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~  279 (521)
                      .+|. .|+++.+|++|++++|. +..+|  .++++.+|++|++++|.++.  +|..++.+++|++|++..
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence            8875 57899999999999985 77887  58999999999999998764  567788888888887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=1.7e-18  Score=170.91  Aligned_cols=120  Identities=25%  Similarity=0.341  Sum_probs=90.7

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeec
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLL  231 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l  231 (521)
                      +++.+++.++.+..+|..+.   +++++|++++|. +..++...|+++++|++|++++|.+..+ |..++.+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCccCC---CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            57788888888888887654   578888888887 7777775568888888888888888865 777888888888888


Q ss_pred             ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519          232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM  279 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~  279 (521)
                      ++|. +..+| .+.  .+|++|++++|.+..++.. ++++++|++|++..
T Consensus       108 s~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  154 (330)
T 1xku_A          108 SKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  154 (330)
T ss_dssp             CSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             CCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence            8875 77787 554  6888888888877766543 56666666665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=181.31  Aligned_cols=164  Identities=25%  Similarity=0.242  Sum_probs=137.5

Q ss_pred             EEEecCcccccC-CCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKF-PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..+ +.....++++++|++++|.+..+++..+..+++|++|++++|. +..+|...|+++++|++|++++|
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC
Confidence            444555566555 3456778899999999999999877666799999999999998 88999887899999999999999


Q ss_pred             CCCcc-CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------h
Q 041519          212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------A  281 (521)
Q Consensus       212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~  281 (521)
                      .+..+ |..+..+.+|++|++++|. +..++  .+..+.+|++|++++|.++.+|.. +..+++|+.|++...      +
T Consensus       115 ~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          115 KIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             CCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             ccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            99855 6778999999999999986 66664  799999999999999999988764 888999999988754      3


Q ss_pred             HHHHhhHhcccceEEEec
Q 041519          282 EEAARLSDRLDTFVGYFS  299 (521)
Q Consensus       282 ~~i~~L~~~L~~L~~~~~  299 (521)
                      ..+..++ +|+.|++..+
T Consensus       194 ~~~~~l~-~L~~L~l~~~  210 (477)
T 2id5_A          194 YSFKRLY-RLKVLEISHW  210 (477)
T ss_dssp             TCSCSCT-TCCEEEEECC
T ss_pred             hhcccCc-ccceeeCCCC
Confidence            4577888 9999988654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.79  E-value=1.9e-18  Score=170.60  Aligned_cols=271  Identities=17%  Similarity=0.169  Sum_probs=139.8

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeec
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLL  231 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l  231 (521)
                      +++.+++.++.+..+|..++   +++++|++++|. +..+++..|+++++|++|++++|.++.+ |..++.+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCCC---CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            35556666666555555443   455666666655 4555443345566666666666655544 445556666666666


Q ss_pred             ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc--------hHHHHhhHhcccceEEEeccc
Q 041519          232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA--------AEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~--------~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      ++|. +..+| .+.  .+|++|++++|.++.+|.. ++.+++|++|++...        +..++.+  +|+.|++..+..
T Consensus       110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKL  184 (332)
T ss_dssp             CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBC
T ss_pred             CCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCC
Confidence            6553 55555 333  5566666666655555443 555556665555432        1111111  344444433322


Q ss_pred             cchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc------ccCccccceEEEecccCccccccc
Q 041519          302 NDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET------IVLPEDVQYLEMFGVDDVASLNDV  375 (521)
Q Consensus       302 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~------~~~p~~L~~L~l~~~~~l~~l~~~  375 (521)
                      ..+...+     ..                       +|+.|.++++...      ....+.|+.|+++++         
T Consensus       185 ~~l~~~~-----~~-----------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N---------  227 (332)
T 2ft3_A          185 TGIPKDL-----PE-----------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN---------  227 (332)
T ss_dssp             SSCCSSS-----CS-----------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS---------
T ss_pred             CccCccc-----cC-----------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---------
Confidence            2211100     01                       2333333333111      111345666655543         


Q ss_pred             ccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCC
Q 041519          376 LPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNG  455 (521)
Q Consensus       376 ~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~  455 (521)
                           .+...+...+..+++|++|+++++ .+..++...                ..+++|+.|++.+. .++.++...-
T Consensus       228 -----~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l----------------~~l~~L~~L~l~~N-~l~~~~~~~~  284 (332)
T 2ft3_A          228 -----QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL----------------PDLKLLQVVYLHTN-NITKVGVNDF  284 (332)
T ss_dssp             -----CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTG----------------GGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred             -----cCCcCChhHhhCCCCCCEEECCCC-cCeecChhh----------------hcCccCCEEECCCC-CCCccChhHc
Confidence                 223344444577888888888877 344554322                45788888888874 4666554210


Q ss_pred             -----cccCCCccEEEEecCCCc--ccccCcCcccCCCCCCCCCCceEEEee
Q 041519          456 -----VLVCNSLQEIEVYNCPKL--KRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       456 -----~~~~p~L~~L~i~~C~~L--~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                           ...+++|+.|++.++|-.  ...|..+..+++        |+.+.+.
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~--------L~~l~l~  328 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD--------RLAIQFG  328 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC--------STTEEC-
T ss_pred             cccccccccccccceEeecCcccccccCcccccccch--------hhhhhcc
Confidence                 012577888888888743  223444545444        7777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=1.5e-18  Score=179.11  Aligned_cols=312  Identities=16%  Similarity=0.160  Sum_probs=207.2

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-cc-CccccCCcccceeec
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VL-PNSVSDLTNLRSLLL  231 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l-p~~i~~L~~L~~L~l  231 (521)
                      -+.++..++.+..+|. +.   ++|++|++++|. +..+++..|+++++|++|++++|.+. .+ |..++.+++|++|++
T Consensus        12 ~~~~~c~~~~l~~lp~-l~---~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-LP---AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCSSCCC-CC---TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcccCCC-CC---CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            3567778888889987 33   789999999998 77776555699999999999999886 55 567899999999999


Q ss_pred             ccCCCCCcc-C-CccCCCCCCEEEeeCCcCcc-cCcc--ccCCCCCcccccccc------hHH-HHhhHhcccceEEEec
Q 041519          232 RWCGILKRV-P-SLAKLLALQYLDLEGTWIEE-VPEG--MEMLENLSHLSLFMA------AEE-AARLSDRLDTFVGYFS  299 (521)
Q Consensus       232 ~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~~~~~------~~~-i~~L~~~L~~L~~~~~  299 (521)
                      ++|. +..+ | .++++.+|++|++++|.+.. +|..  ++.+++|++|++...      +.. ++.++ +|++|++..+
T Consensus        87 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n  164 (455)
T 3v47_A           87 DYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFHVLDLTFN  164 (455)
T ss_dssp             TTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-TCCEEECTTC
T ss_pred             CCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-cccEEeCCCC
Confidence            9987 5655 6 79999999999999998875 4444  889999999988754      333 78899 9999998766


Q ss_pred             cccchhh-hhhccCCCCCCcceeeeecCCCCC---Cc------cccceeeeeeeeeecCcccccC---------ccccce
Q 041519          300 TLNDFNI-YVKSTDGRGSKNYCLLLSASGKRG---FL------EVDKSVRLFACKICETEETIVL---------PEDVQY  360 (521)
Q Consensus       300 ~~~~~~~-~~~~~~~l~~L~~l~~~~~~~~~~---~~------~~~~~~~L~~L~i~~~~~~~~~---------p~~L~~  360 (521)
                      ....... .+.... ..+|+.+.+........   ..      ......+|+.|.++++......         ...++.
T Consensus       165 ~l~~~~~~~l~~l~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~  243 (455)
T 3v47_A          165 KVKSICEEDLLNFQ-GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS  243 (455)
T ss_dssp             CBSCCCTTTSGGGT-TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred             cccccChhhhhccc-cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence            5544321 111111 12333333321111100   00      0123358999999888543222         257888


Q ss_pred             EEEecccCccc----------------------ccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchh
Q 041519          361 LEMFGVDDVAS----------------------LNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEET  418 (521)
Q Consensus       361 L~l~~~~~l~~----------------------l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~  418 (521)
                      |.+.++.....                      +..+--..+.+...+...+..+++|++|+++++.. ..++..     
T Consensus       244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-----  317 (455)
T 3v47_A          244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDN-----  317 (455)
T ss_dssp             EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTT-----
T ss_pred             EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccChh-----
Confidence            88876632111                      11111111223333334457788888888887743 333211     


Q ss_pred             hhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccc-cCcCcccCCCCCCCCCCceEE
Q 041519          419 EKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRL-SLSLPLLDNGQPSPPPALEVI  497 (521)
Q Consensus       419 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l-P~~~~~l~~~~~~~~~~L~~l  497 (521)
                                ....+++|++|++.++ .+..+... ....+++|++|++++|. ++.+ |..+..+        ++|++|
T Consensus       318 ----------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l--------~~L~~L  376 (455)
T 3v47_A          318 ----------AFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNH-IRALGDQSFLGL--------PNLKEL  376 (455)
T ss_dssp             ----------TTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSC-CCEECTTTTTTC--------TTCCEE
T ss_pred             ----------HhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCc-ccccChhhcccc--------ccccEE
Confidence                      1246899999999986 45555331 23457999999999985 5555 5556554        459999


Q ss_pred             Eee
Q 041519          498 EIK  500 (521)
Q Consensus       498 ~~~  500 (521)
                      ++.
T Consensus       377 ~L~  379 (455)
T 3v47_A          377 ALD  379 (455)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            998

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=6.2e-18  Score=166.53  Aligned_cols=144  Identities=25%  Similarity=0.456  Sum_probs=123.4

Q ss_pred             CCcEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEcc
Q 041519          130 SPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC  209 (521)
Q Consensus       130 ~~~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~  209 (521)
                      .-..+...+..+..+|.....++++++|++++|.+..+|..+. .+++|++|++++|. +..+|..+ +.+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~-l~~lp~~l-~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNP-LRALPASI-ASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCC-CCCCCGGG-GGCTTCCEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCc-cccCcHHH-hcCcCCCEEECC
Confidence            3345666777888999988889999999999999999998775 89999999999998 77898875 899999999999


Q ss_pred             CCC-CCccCccccC---------CcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCccccc
Q 041519          210 HTS-IEVLPNSVSD---------LTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL  277 (521)
Q Consensus       210 ~~~-l~~lp~~i~~---------L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~  277 (521)
                      +|. +..+|..++.         +.+|++|++++|. +..+| .++++.+|++|++++|.+..+|..++.+++|++|++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            975 5588887765         9999999999986 88999 899999999999999999988887766665555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.78  E-value=4.6e-18  Score=184.49  Aligned_cols=161  Identities=22%  Similarity=0.229  Sum_probs=122.0

Q ss_pred             EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..+|+..|+++++|++|++++|
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN  107 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC
Confidence            44445556666664 35667889999999999988877766688999999999987 88888866689999999999999


Q ss_pred             CCCccC-ccccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCcccCcc-c--cCCCCCcccccccc-----
Q 041519          212 SIEVLP-NSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEVPEG-M--EMLENLSHLSLFMA-----  280 (521)
Q Consensus       212 ~l~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~~~~~-----  280 (521)
                      .+..+| ..++++.+|++|++++|. +... | .++++.+|++|++++|.++.++.. +  ..+++|++|++...     
T Consensus       108 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          108 SIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             CCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             ccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence            888776 578899999999999986 4444 4 688899999999999988876653 2  34577888877643     


Q ss_pred             -hHHHHhhHhcccceEE
Q 041519          281 -AEEAARLSDRLDTFVG  296 (521)
Q Consensus       281 -~~~i~~L~~~L~~L~~  296 (521)
                       +..++.+. +|+.|.+
T Consensus       187 ~~~~~~~l~-~L~~L~l  202 (680)
T 1ziw_A          187 SPGCFHAIG-RLFGLFL  202 (680)
T ss_dssp             CTTGGGGSS-EECEEEC
T ss_pred             Chhhhhhhh-hhhhhhc
Confidence             33455555 5555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.78  E-value=3.2e-18  Score=176.29  Aligned_cols=302  Identities=15%  Similarity=0.106  Sum_probs=194.4

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+| ....++++++|++++|.+..+|   +..+++|++|++++|. +..++   ++.+++|++|++++|.
T Consensus        46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N~  117 (457)
T 3bz5_A           46 SLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNK  117 (457)
T ss_dssp             EEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSSC
T ss_pred             EEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCCc
Confidence            3444555666666 4667788999999999988885   3478899999999988 77765   5889999999999998


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccccc---hHHHHhhH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLFMA---AEEAARLS  288 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~~~---~~~i~~L~  288 (521)
                      ++.+|  ++.+++|++|++++|. +..+| ++.+.+|++|++++| .+..+  .++.+++|++|++...   .-.++.++
T Consensus       118 l~~l~--~~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~  191 (457)
T 3bz5_A          118 LTKLD--VSQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNK  191 (457)
T ss_dssp             CSCCC--CTTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCT
T ss_pred             CCeec--CCCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCC
Confidence            88876  7888999999999875 66665 778888888988888 56666  3677888888877654   11266777


Q ss_pred             hcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccC---ccccceEEEec
Q 041519          289 DRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVL---PEDVQYLEMFG  365 (521)
Q Consensus       289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~---p~~L~~L~l~~  365 (521)
                       +|+.|++..+.+...     ....+.+|+.+.+.......  .+.....+|+.+.++++......   .+.|+.|++.+
T Consensus       192 -~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~--ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          192 -LLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE--IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             -TCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred             -CCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc--cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence             888888776665443     23445666666655333222  23445567888888877443222   23455555433


Q ss_pred             ccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc
Q 041519          366 VDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR  445 (521)
Q Consensus       366 ~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  445 (521)
                      . .++.+.  +..+..+..+|   ...+++|+.|++++|..++.++.....        -........++|+.|++.++ 
T Consensus       264 n-~L~~L~--l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~--------L~~L~l~~~~~L~~L~L~~N-  328 (457)
T 3bz5_A          264 T-DLLEID--LTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAG--------ITELDLSQNPKLVYLYLNNT-  328 (457)
T ss_dssp             C-CCSCCC--CTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCC--------CSCCCCTTCTTCCEEECTTC-
T ss_pred             C-CCCEEE--CCCCccCCccc---ccccccCCEEECCCCcccceeccCCCc--------ceEechhhcccCCEEECCCC-
Confidence            2 222221  22222222333   256889999999999877776532100        00111233456666666652 


Q ss_pred             cccccccCCCcccCCCccEEEEecCCCcccc
Q 041519          446 EFKSICSDNGVLVCNSLQEIEVYNCPKLKRL  476 (521)
Q Consensus       446 ~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l  476 (521)
                      +++.++    ...+++|+.|+++++. ++.+
T Consensus       329 ~l~~l~----l~~l~~L~~L~l~~N~-l~~l  354 (457)
T 3bz5_A          329 ELTELD----VSHNTKLKSLSCVNAH-IQDF  354 (457)
T ss_dssp             CCSCCC----CTTCTTCSEEECCSSC-CCBC
T ss_pred             cccccc----cccCCcCcEEECCCCC-CCCc
Confidence            344442    2356888888887653 4443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=9.9e-18  Score=166.98  Aligned_cols=137  Identities=23%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519          137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL  216 (521)
Q Consensus       137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l  216 (521)
                      .+..+..+|...  .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.++.+
T Consensus        39 ~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           39 SSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             CSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            344455555432  2356666666666666655444466666666666665 5555444346666666666666666655


Q ss_pred             Ccc-ccCCcccceeecccCCCCCccCC---ccCCCCCCEEEeeCC-cCcccC-ccccCCCCCccccc
Q 041519          217 PNS-VSDLTNLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGT-WIEEVP-EGMEMLENLSHLSL  277 (521)
Q Consensus       217 p~~-i~~L~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~~  277 (521)
                      |.. ++.+++|++|++++|. +..+|.   +..+.+|++|++++| .+..++ ..++.+++|++|++
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            544 5566666666666654 555542   556666666666666 455443 33444444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=3.5e-17  Score=181.63  Aligned_cols=308  Identities=16%  Similarity=0.117  Sum_probs=185.0

Q ss_pred             EEecCcccccC-CCcccccCCccEEEeecC-CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          134 MVTAGLRLLKF-PGEQEWEENLERVSLMEN-DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       134 ~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~-~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      +..+++.+..+ +.....++++++|++++| .+..+++..+.++++|++|++++|. +..+++..|+++++|++|++++|
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCC
Confidence            33444555444 556677899999999999 4556766666799999999999998 77775555699999999999999


Q ss_pred             CCCc-cCcc--ccCCcccceeecccCCCCCcc-C--CccCCCCCCEEEeeCCcCcc-cCccccCC--CCCcccccccc--
Q 041519          212 SIEV-LPNS--VSDLTNLRSLLLRWCGILKRV-P--SLAKLLALQYLDLEGTWIEE-VPEGMEML--ENLSHLSLFMA--  280 (521)
Q Consensus       212 ~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p--~~~~l~~L~~L~l~~~~l~~-lp~~i~~l--~~L~~L~~~~~--  280 (521)
                      .+.. +|..  ++++++|++|++++|. +..+ |  .++++.+|++|++++|.+.. .|..++.+  ++|+.|++...  
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred             CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence            9884 5655  8899999999999987 5554 3  58999999999999998875 46667766  78888877644  


Q ss_pred             ----hHHHHhhHh-----cccceEEEeccccc-hhhhhhccCCCCCCcceeeee---cC----CCC-----CCcccccee
Q 041519          281 ----AEEAARLSD-----RLDTFVGYFSTLND-FNIYVKSTDGRGSKNYCLLLS---AS----GKR-----GFLEVDKSV  338 (521)
Q Consensus       281 ----~~~i~~L~~-----~L~~L~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~---~~----~~~-----~~~~~~~~~  338 (521)
                          +..++.+..     .|+.|++..+.... ....+...-....+..+.+..   +.    ...     ..+......
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence                222333330     27788776553322 111111111112222222110   00    000     000011123


Q ss_pred             eeeeeeeecCcccc------cCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhc
Q 041519          339 RLFACKICETEETI------VLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVA  412 (521)
Q Consensus       339 ~L~~L~i~~~~~~~------~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~  412 (521)
                      +|+.|.++++....      ...+.|+.|++.++.              +...+...+..+++|++|+++++. +..+..
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--------------i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~  331 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK--------------INKIADEAFYGLDNLQVLNLSYNL-LGELYS  331 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC--------------CCEECTTTTTTCSSCCEEEEESCC-CSCCCS
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCc--------------CCCCChHHhcCCCCCCEEECCCCC-CCccCH
Confidence            56666666553211      123466777766542              222333334567777777777663 222211


Q ss_pred             cCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccc
Q 041519          413 VEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRL  476 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l  476 (521)
                      .               ....+++|+.|++.++ .+..++.. ....+++|+.|++++|. ++.+
T Consensus       332 ~---------------~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i  377 (844)
T 3j0a_A          332 S---------------NFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTI  377 (844)
T ss_dssp             C---------------SCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCC
T ss_pred             H---------------HhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcc
Confidence            1               1135667777777764 45544431 12235667777776653 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=5e-17  Score=160.47  Aligned_cols=257  Identities=18%  Similarity=0.189  Sum_probs=180.6

Q ss_pred             CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCcc-C-CccCCCCCCEE
Q 041519          176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYL  252 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L  252 (521)
                      .++++++++++. +..+|..+   .++|++|++++|.+..++ ..++++.+|++|++++|. +..+ | .++++.+|++|
T Consensus        33 c~l~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLG-LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSC-CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEE
T ss_pred             ccCCEEECCCCC-ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEE
Confidence            379999999998 88999865   478999999999999774 579999999999999986 7766 5 79999999999


Q ss_pred             EeeCCcCcccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecC
Q 041519          253 DLEGTWIEEVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSAS  326 (521)
Q Consensus       253 ~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~  326 (521)
                      ++++|.++.+|..+.  ++|++|++...      +..++.++ +|+.|++..+..............+            
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l------------  172 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL------------  172 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSC------------
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCc-cCCEEECCCCccccCCCCcccccCC------------
Confidence            999999999998775  78888877654      23466677 7777776655443211111111111            


Q ss_pred             CCCCCccccceeeeeeeeeecCcc---cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEec
Q 041519          327 GKRGFLEVDKSVRLFACKICETEE---TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGY  403 (521)
Q Consensus       327 ~~~~~~~~~~~~~L~~L~i~~~~~---~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~  403 (521)
                                  +|+.+.++++..   ...+++.|+.|+++++              .+...+...+..+++|++|++++
T Consensus       173 ------------~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n--------------~i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          173 ------------KLNYLRISEAKLTGIPKDLPETLNELHLDHN--------------KIQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             ------------CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS--------------CCCCCCTTSSTTCTTCSCCBCCS
T ss_pred             ------------ccCEEECcCCCCCccCccccCCCCEEECCCC--------------cCCccCHHHhcCCCCCCEEECCC
Confidence                        344444444422   1223467888877664              22334444457889999999998


Q ss_pred             ccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC-cc
Q 041519          404 CFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL-PL  482 (521)
Q Consensus       404 c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~-~~  482 (521)
                      +. +..++..               ....+++|+.|++.++ ++..++.  ....+++|+.|++++++ ++.+|... ..
T Consensus       227 N~-l~~~~~~---------------~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~~~~  286 (332)
T 2ft3_A          227 NQ-IRMIENG---------------SLSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVNDFCP  286 (332)
T ss_dssp             SC-CCCCCTT---------------GGGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTSSSC
T ss_pred             Cc-CCcCChh---------------HhhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCCC-CCccChhHccc
Confidence            74 3433321               1246899999999986 6777776  56678999999999985 88887632 11


Q ss_pred             cCCCCCCCCCCceEEEee
Q 041519          483 LDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       483 l~~~~~~~~~~L~~l~~~  500 (521)
                      ..  .....++|+.|.+.
T Consensus       287 ~~--~~~~~~~l~~L~l~  302 (332)
T 2ft3_A          287 VG--FGVKRAYYNGISLF  302 (332)
T ss_dssp             SS--CCSSSCCBSEEECC
T ss_pred             cc--cccccccccceEee
Confidence            11  01125679999988

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=5.5e-17  Score=166.89  Aligned_cols=294  Identities=20%  Similarity=0.228  Sum_probs=138.8

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|.   ..+++++|++++|.++.+|..    +++|++|++++|. +..++.    ..++|++|++++|.
T Consensus        75 ~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n~  142 (454)
T 1jl5_A           75 ELELNNLGLSSLPE---LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQ  142 (454)
T ss_dssp             EEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSC
T ss_pred             EEEecCCccccCCC---CcCCCCEEEccCCcCCccccc----cCCCcEEECCCCc-cCcccC----CCCCCCEEECcCCC
Confidence            34444555555554   235667777777766666542    2556666666655 444432    11456666666666


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccch-HHHH-hhHhc
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAA-EEAA-RLSDR  290 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~-~~i~-~L~~~  290 (521)
                      ++.+| +++.+.+|++|++++|. +..+|..  ..+|++|++++|.++.+| .++++++|++|++.... .++. ... +
T Consensus       143 l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~-~  216 (454)
T 1jl5_A          143 LEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPL-S  216 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCT-T
T ss_pred             CCCCc-ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcC-c
Confidence            66555 35666666666666653 5555521  135666666666555555 35555666555554330 0000 112 4


Q ss_pred             ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccC
Q 041519          291 LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDD  368 (521)
Q Consensus       291 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~  368 (521)
                      |++|++..+....+.    ....+.+|+.+.+.......  . +....+|+.+.++++....  ..++.|+.|+++++. 
T Consensus       217 L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~--l-~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~-  288 (454)
T 1jl5_A          217 LESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKT--L-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI-  288 (454)
T ss_dssp             CCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS--C-CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-
T ss_pred             ccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCc--c-cccccccCEEECCCCcccccCcccCcCCEEECcCCc-
Confidence            555554444332211    12233444444333211110  0 0011244444444442211  122344555444432 


Q ss_pred             cccccccccC-------CCcccccccchhhcc-CCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceee
Q 041519          369 VASLNDVLPR-------EQGLNLFSLRLLPAL-QNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLH  440 (521)
Q Consensus       369 l~~l~~~~~~-------~~~l~~~p~~~l~~L-~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~  440 (521)
                      +..++...+.       .+.+..+     +.+ ++|++|+++++. +..++                   ..+++|++|+
T Consensus       289 l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~-l~~lp-------------------~~~~~L~~L~  343 (454)
T 1jl5_A          289 FSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNK-LIELP-------------------ALPPRLERLI  343 (454)
T ss_dssp             CSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSC-CSCCC-------------------CCCTTCCEEE
T ss_pred             cCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCc-ccccc-------------------ccCCcCCEEE
Confidence            1111100000       0111111     122 467777777653 33332                   2357788888


Q ss_pred             cCCcccccccccCCCcccCCCccEEEEecCCCcc--cccCcCccc
Q 041519          441 LEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLK--RLSLSLPLL  483 (521)
Q Consensus       441 l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~--~lP~~~~~l  483 (521)
                      +.++ +++.++.     .+++|++|++++|+--.  .+|..+..+
T Consensus       344 L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          344 ASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             CCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             CCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            8775 4665554     35778888888775333  355555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.74  E-value=6.7e-17  Score=166.56  Aligned_cols=125  Identities=26%  Similarity=0.371  Sum_probs=65.9

Q ss_pred             ecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc
Q 041519          136 TAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV  215 (521)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~  215 (521)
                      ..+..+..+|..  ..+++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|+|++|.++.
T Consensus        61 c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           61 CTRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             CCSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred             ECCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCc
Confidence            334444444432  22455556666555555554444455556666665555 444444444555566666666555555


Q ss_pred             cCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCC-cCcccCc
Q 041519          216 LPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGT-WIEEVPE  264 (521)
Q Consensus       216 lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~-~l~~lp~  264 (521)
                      +|.. ++.+.+|++|++++|. +..+|  .+.++.+|++|++++| .+..+|.
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            4432 4455556666665554 44554  3555556666665554 4444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=8.5e-18  Score=164.48  Aligned_cols=127  Identities=19%  Similarity=0.384  Sum_probs=108.2

Q ss_pred             CCccEEEeecCCCCC---CCCCcCCCCCCccEEEccc-CcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCccc
Q 041519          152 ENLERVSLMENDFEE---IPSNMSPHCEILSTLLLQH-NKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNL  226 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~---l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L  226 (521)
                      .++++|+++++.+..   +|..+. .+++|++|++++ |.....+|..+ +++++|++|++++|.+. .+|..++.+.+|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            479999999999984   676665 899999999995 76455777765 89999999999999998 889999999999


Q ss_pred             ceeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCC-CCcccccccc
Q 041519          227 RSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLE-NLSHLSLFMA  280 (521)
Q Consensus       227 ~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~~~~~  280 (521)
                      ++|++++|.....+| .++.+.+|++|++++|.+. .+|..++.+. +|++|++...
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            999999987444788 8999999999999999888 8899999888 8888877643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=9.1e-18  Score=163.75  Aligned_cols=137  Identities=21%  Similarity=0.248  Sum_probs=85.5

Q ss_pred             EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCC---chhHhhCCCCCcEEEccCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRI---PECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~L~~~  211 (521)
                      ...+..+..+|...  .+++++|++.+|.+..+|...+..+++|++|++++|. +..+   +..+ ..+++|++|++++|
T Consensus        13 ~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           13 RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSFN   88 (306)
T ss_dssp             ECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCSC
T ss_pred             EcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCCC
Confidence            34445556666532  3567777777777777777666677777777777776 4433   3433 46777777777777


Q ss_pred             CCCccCccccCCcccceeecccCCCCCccC---CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccc
Q 041519          212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLS  276 (521)
Q Consensus       212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~  276 (521)
                      .+..+|..+..+++|++|++++|. +..++   .+..+.+|++|++++|.+... |..++.+++|++|+
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            777777667777777777777764 55443   366677777777777766543 33344444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=1e-16  Score=164.55  Aligned_cols=139  Identities=27%  Similarity=0.390  Sum_probs=81.8

Q ss_pred             EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      ...+..+..+|...  .++++.|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.++
T Consensus        49 ~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           49 ICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             ECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             EeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCC
Confidence            33444555555432  2466666666666666665555566666666666665 55555555566666666666666666


Q ss_pred             ccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCC-cCcccCcc-ccCCCCCccccc
Q 041519          215 VLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGT-WIEEVPEG-MEMLENLSHLSL  277 (521)
Q Consensus       215 ~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~-~l~~lp~~-i~~l~~L~~L~~  277 (521)
                      .+|. .+..+.+|++|++++|. +..+|  .+.++.+|++|++++| .+..++.. +.++++|++|++
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  192 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL  192 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred             eeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence            5554 45666666666666654 55555  4666666666666664 55555442 444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=3.1e-17  Score=163.35  Aligned_cols=167  Identities=22%  Similarity=0.262  Sum_probs=139.4

Q ss_pred             EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..++...|+.+++|++|++++|
T Consensus        56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC
T ss_pred             EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC
Confidence            44555666666665 56678899999999999999887767799999999999998 88899887799999999999999


Q ss_pred             CCCccCc--cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc-----h
Q 041519          212 SIEVLPN--SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA-----A  281 (521)
Q Consensus       212 ~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~-----~  281 (521)
                      .++.+|.  .++.+++|++|++++|..+..++  .++.+.+|++|++++|.+..+ |..++.+++|++|++...     +
T Consensus       135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence            9998887  78899999999999986678775  699999999999999988865 778889999999888654     2


Q ss_pred             H-HHHhhHhcccceEEEeccc
Q 041519          282 E-EAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       282 ~-~i~~L~~~L~~L~~~~~~~  301 (521)
                      . .++.++ +|+.|++..+..
T Consensus       215 ~~~~~~~~-~L~~L~L~~n~l  234 (353)
T 2z80_A          215 EIFVDVTS-SVECLELRDTDL  234 (353)
T ss_dssp             HHHHHHTT-TEEEEEEESCBC
T ss_pred             hhhhhhcc-cccEEECCCCcc
Confidence            2 244577 888887766544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.72  E-value=8.4e-17  Score=158.67  Aligned_cols=275  Identities=15%  Similarity=0.143  Sum_probs=182.4

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+.+++|++++|.+..++...+..+++|++|++++|. +..+++..|+.+++|++|++++|.
T Consensus        35 ~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           35 VVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             EEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc
Confidence            3444555666777643  3689999999999999998777799999999999998 777755446999999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc---cCccccCCCCCcccccccchHHHHhh
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE---VPEGMEMLENLSHLSLFMAAEEAARL  287 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~~~~~~~~i~~L  287 (521)
                      ++.+|..+.  .+|++|++++|. +..++  .+.++.+|++|++++|.+..   .+..++.+++|++|++...       
T Consensus       112 l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-------  181 (330)
T 1xku_A          112 LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-------  181 (330)
T ss_dssp             CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-------
T ss_pred             CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-------
Confidence            999998765  799999999986 77776  58999999999999997763   3445555665555544332       


Q ss_pred             HhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc------ccCccccceE
Q 041519          288 SDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET------IVLPEDVQYL  361 (521)
Q Consensus       288 ~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~------~~~p~~L~~L  361 (521)
                                  ....+...+     ..+                       |+.|.++++...      ....+.|+.|
T Consensus       182 ------------~l~~l~~~~-----~~~-----------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          182 ------------NITTIPQGL-----PPS-----------------------LTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             ------------CCCSCCSSC-----CTT-----------------------CSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ------------ccccCCccc-----ccc-----------------------CCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence                        221111000     022                       222333222111      1123467777


Q ss_pred             EEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeec
Q 041519          362 EMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHL  441 (521)
Q Consensus       362 ~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l  441 (521)
                      +++++.              +...+...+..+++|++|+++++ .+..++...                ..+++|++|++
T Consensus       222 ~Ls~n~--------------l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l----------------~~l~~L~~L~l  270 (330)
T 1xku_A          222 GLSFNS--------------ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGL----------------ADHKYIQVVYL  270 (330)
T ss_dssp             ECCSSC--------------CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTT----------------TTCSSCCEEEC
T ss_pred             ECCCCc--------------CceeChhhccCCCCCCEEECCCC-cCccCChhh----------------ccCCCcCEEEC
Confidence            766542              23333334577889999999888 444554322                46789999999


Q ss_pred             CCcccccccccCCC-----cccCCCccEEEEecCCCcc--cccCcCcccCCCCCCCCCCceEEEee
Q 041519          442 EDLREFKSICSDNG-----VLVCNSLQEIEVYNCPKLK--RLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       442 ~~~~~L~~~~~~~~-----~~~~p~L~~L~i~~C~~L~--~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      .++ .++.++...-     ...++.|+.|++.++|--.  .-|..+..+.+        ++.+++.
T Consensus       271 ~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~--------l~~l~L~  327 (330)
T 1xku_A          271 HNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV--------RAAVQLG  327 (330)
T ss_dssp             CSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC--------GGGEEC-
T ss_pred             CCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc--------eeEEEec
Confidence            885 4666654211     1124788899999887421  22334444443        7777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.72  E-value=3.2e-16  Score=166.46  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=82.4

Q ss_pred             cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      ..+...+..+..+|....  +++++|++++|.++.+|.    .+++|++|++++|. +..+|.    .+++|++|++++|
T Consensus        43 ~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N  111 (622)
T 3g06_A           43 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN  111 (622)
T ss_dssp             CEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC
T ss_pred             cEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC
Confidence            345556666677776443  677888888888777766    35778888888777 666765    5677888888888


Q ss_pred             CCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCcc
Q 041519          212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG  265 (521)
Q Consensus       212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~  265 (521)
                      .++.+|.   .+.+|++|++++|. +..+|..  +.+|++|++++|.++.+|..
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~l~~l~~~  159 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQLASLPAL  159 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSCCCCC
T ss_pred             cCCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCcCCCcCCc
Confidence            7777776   56677788887765 7777721  37778888888877777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.71  E-value=4e-16  Score=160.44  Aligned_cols=269  Identities=16%  Similarity=0.119  Sum_probs=174.7

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      ++++|++.++.++.+|..    .++|++|++++|. +..+|.    .+.+|++|++++|.+..+|..   ..+|++|+++
T Consensus        72 ~l~~L~l~~~~l~~lp~~----~~~L~~L~l~~n~-l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~  139 (454)
T 1jl5_A           72 QAHELELNNLGLSSLPEL----PPHLESLVASCNS-LTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  139 (454)
T ss_dssp             TCSEEECTTSCCSCCCSC----CTTCSEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             CCCEEEecCCccccCCCC----cCCCCEEEccCCc-CCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECc
Confidence            678999999999888763    3689999999988 666775    347899999999988877652   2689999999


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhhhh
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNIYV  308 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~~~  308 (521)
                      +|. +..+|+++++.+|++|++++|.++.+|..+   .+|++|++...    ...++.++ +|+.|++..+....+..  
T Consensus       140 ~n~-l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~-~L~~L~l~~N~l~~l~~--  212 (454)
T 1jl5_A          140 NNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLP-FLTAIYADNNSLKKLPD--  212 (454)
T ss_dssp             SSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCT-TCCEEECCSSCCSSCCC--
T ss_pred             CCC-CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCC-CCCEEECCCCcCCcCCC--
Confidence            986 777888999999999999999888888754   47777777644    12577888 89998887665543221  


Q ss_pred             hccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccCcccccccccCC-------
Q 041519          309 KSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDDVASLNDVLPRE-------  379 (521)
Q Consensus       309 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~l~~l~~~~~~~-------  379 (521)
                          ...+|+.+.+......... ......+|+.+.++++....  ..+++|+.|+++++. +..++...+..       
T Consensus       213 ----~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~  286 (454)
T 1jl5_A          213 ----LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE  286 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             ----CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCc-ccccCcccCcCCEEECcC
Confidence                1235666655433222111 23455678888888774322  235788888887753 22222111110       


Q ss_pred             CcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccC-CccceeecCCcccccccccCCCccc
Q 041519          380 QGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTL-PRLKKLHLEDLREFKSICSDNGVLV  458 (521)
Q Consensus       380 ~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~  458 (521)
                      +.+..+|.    ..++|++|+++++. +..+                    ..+ ++|+.|++.++ ++..++.     .
T Consensus       287 N~l~~l~~----~~~~L~~L~l~~N~-l~~i--------------------~~~~~~L~~L~Ls~N-~l~~lp~-----~  335 (454)
T 1jl5_A          287 NIFSGLSE----LPPNLYYLNASSNE-IRSL--------------------CDLPPSLEELNVSNN-KLIELPA-----L  335 (454)
T ss_dssp             SCCSEESC----CCTTCCEEECCSSC-CSEE--------------------CCCCTTCCEEECCSS-CCSCCCC-----C
T ss_pred             CccCcccC----cCCcCCEEECcCCc-CCcc--------------------cCCcCcCCEEECCCC-ccccccc-----c
Confidence            11111110    01344445444432 1111                    123 58888888874 5666654     3


Q ss_pred             CCCccEEEEecCCCcccccC
Q 041519          459 CNSLQEIEVYNCPKLKRLSL  478 (521)
Q Consensus       459 ~p~L~~L~i~~C~~L~~lP~  478 (521)
                      +++|+.|++++| +++.+|.
T Consensus       336 ~~~L~~L~L~~N-~l~~lp~  354 (454)
T 1jl5_A          336 PPRLERLIASFN-HLAEVPE  354 (454)
T ss_dssp             CTTCCEEECCSS-CCSCCCC
T ss_pred             CCcCCEEECCCC-ccccccc
Confidence            588999999887 4777776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=5.9e-17  Score=157.96  Aligned_cols=142  Identities=21%  Similarity=0.259  Sum_probs=122.1

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc---CccccCCcccceee
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL---PNSVSDLTNLRSLL  230 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~  230 (521)
                      .+.++..++.++.+|..+.   +++++|++++|. +..+|..+|+++++|++|++++|.+..+   |..+..+.+|++|+
T Consensus         9 ~~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CCEEEcCCCCcccCCCCCC---CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            3578888899999998765   689999999998 8899998889999999999999998855   67778899999999


Q ss_pred             cccCCCCCccC-CccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccc------hHHHHhhHhcccceEEEeccc
Q 041519          231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      +++|. +..+| .+..+.+|++|++++|.+..++.  .+..+++|++|++...      +..++.++ +|++|++..+..
T Consensus        85 Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEE
T ss_pred             CCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCcc
Confidence            99986 88898 89999999999999999988774  6889999999998754      45577888 999998765543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=6.4e-17  Score=171.79  Aligned_cols=254  Identities=17%  Similarity=0.136  Sum_probs=165.6

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      +++.|+++++.++.+|..++   ++|++|++++|. +..+|.    .+++|++|++++|.++.+|.   .+.+|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC---CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence            57888888888888887765   688888888887 777776    46888888888888888876   67888888888


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccch-HHH-HhhHhcccceEEEeccccchhhhhhc
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAA-EEA-ARLSDRLDTFVGYFSTLNDFNIYVKS  310 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~-~~i-~~L~~~L~~L~~~~~~~~~~~~~~~~  310 (521)
                      +|. +..+|.  .+.+|++|++++|.++.+|..+   ++|++|++..+. ..+ ..+. +|+.|.+..+.+..+.     
T Consensus       110 ~N~-l~~l~~--~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~-~L~~L~L~~N~l~~l~-----  177 (622)
T 3g06_A          110 SNP-LTHLPA--LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPS-ELCKLWAYNNQLTSLP-----  177 (622)
T ss_dssp             SCC-CCCCCC--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCT-TCCEEECCSSCCSCCC-----
T ss_pred             CCc-CCCCCC--CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccC-CCCEEECCCCCCCCCc-----
Confidence            875 777775  5678888888888888888753   677777776541 001 1234 6666666555444322     


Q ss_pred             cCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccCcccccccccCCCcccccccc
Q 041519          311 TDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLR  388 (521)
Q Consensus       311 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~  388 (521)
                       ..+.+|+.+.+.......  . +....+|+.|.+.++....  ..+++|+.|+++++              .++.+|  
T Consensus       178 -~~~~~L~~L~Ls~N~l~~--l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--------------~L~~lp--  237 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLAS--L-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN--------------RLTSLP--  237 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSC--C-CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--------------CCSCCC--
T ss_pred             -ccCCCCcEEECCCCCCCC--C-CCccchhhEEECcCCcccccCCCCCCCCEEEccCC--------------ccCcCC--
Confidence             223455555443222111  1 1112356666666553221  12356777766653              222333  


Q ss_pred             hhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEe
Q 041519          389 LLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVY  468 (521)
Q Consensus       389 ~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~  468 (521)
                        ..+++|++|+++++ .+..++.                   .+++|+.|++.++ +++.++.  ....+++|+.|++.
T Consensus       238 --~~l~~L~~L~Ls~N-~L~~lp~-------------------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~  292 (622)
T 3g06_A          238 --VLPSELKELMVSGN-RLTSLPM-------------------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLE  292 (622)
T ss_dssp             --CCCTTCCEEECCSS-CCSCCCC-------------------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECC
T ss_pred             --CCCCcCcEEECCCC-CCCcCCc-------------------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEec
Confidence              34577888888877 4444432                   3688888888885 5777765  45567888888888


Q ss_pred             cCCCcc
Q 041519          469 NCPKLK  474 (521)
Q Consensus       469 ~C~~L~  474 (521)
                      +|+--.
T Consensus       293 ~N~l~~  298 (622)
T 3g06_A          293 GNPLSE  298 (622)
T ss_dssp             SCCCCH
T ss_pred             CCCCCC
Confidence            887433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=5e-16  Score=149.00  Aligned_cols=155  Identities=22%  Similarity=0.267  Sum_probs=126.2

Q ss_pred             EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      ...+..+..+|...  .+++++|++++|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|.+.
T Consensus        13 ~c~~~~l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccC
Confidence            34555666777643  3589999999999999988666789999999999998 88888766799999999999999999


Q ss_pred             ccC-ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc--cCccccCCCCCcccccccc------hHH
Q 041519          215 VLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFMA------AEE  283 (521)
Q Consensus       215 ~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~------~~~  283 (521)
                      .++ ..+..+.+|++|++++|. +..++  .++.+.+|++|++++|.++.  +|..++.+++|++|++...      +..
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            665 678999999999999986 66666  69999999999999998886  6888888888888887654      234


Q ss_pred             HHhhHhcccce
Q 041519          284 AARLSDRLDTF  294 (521)
Q Consensus       284 i~~L~~~L~~L  294 (521)
                      ++.+. +|+.+
T Consensus       169 ~~~l~-~L~~l  178 (276)
T 2z62_A          169 LRVLH-QMPLL  178 (276)
T ss_dssp             GHHHH-TCTTC
T ss_pred             hhhhh-hcccc
Confidence            55555 55533

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=3.2e-16  Score=146.96  Aligned_cols=87  Identities=21%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC-CCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEE
Q 041519          177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS-IEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYL  252 (521)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L  252 (521)
                      +++.|++++|. +..++...|+.+++|++|++++|. ++.+|. .++.+++|++|++++|..+..+|  .+..+.+|++|
T Consensus        32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            45555555554 444444434555555555555554 544443 34455555555555422244444  34555555555


Q ss_pred             EeeCCcCcccCc
Q 041519          253 DLEGTWIEEVPE  264 (521)
Q Consensus       253 ~l~~~~l~~lp~  264 (521)
                      ++++|.++.+|.
T Consensus       111 ~l~~n~l~~lp~  122 (239)
T 2xwt_C          111 GIFNTGLKMFPD  122 (239)
T ss_dssp             EEEEECCCSCCC
T ss_pred             eCCCCCCccccc
Confidence            555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=2.2e-15  Score=161.73  Aligned_cols=141  Identities=22%  Similarity=0.285  Sum_probs=121.1

Q ss_pred             EEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccC
Q 041519          156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWC  234 (521)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~  234 (521)
                      +.+-++.+++++|..+.   +++++|++++|. ++.+|+..|.++++|++|+|++|.++.+|. +|+++++|++|++++|
T Consensus        35 ~~~c~~~~l~~vP~~lp---~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP---FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCSSCCSSSC---TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcCccCCCCC---cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            44555667889998764   589999999998 999998777999999999999999998864 6889999999999998


Q ss_pred             CCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc-------hHHHHhhHhcccceEEEecccc
Q 041519          235 GILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA-------AEEAARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       235 ~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~-------~~~i~~L~~~L~~L~~~~~~~~  302 (521)
                      . +..+|  .+.++.+|++|++++|.++.+|.. ++++++|++|++...       +..++.++ +|++|++..+.+.
T Consensus       111 ~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~  186 (635)
T 4g8a_A          111 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQ  186 (635)
T ss_dssp             C-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCC
T ss_pred             c-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCcccc
Confidence            6 88888  489999999999999999998865 899999999988643       56788899 9999988765543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=3.9e-17  Score=159.76  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=88.4

Q ss_pred             CCccEEEcccCcCCC--CCchhHhhCCCCCcEEEccC-CCCC-ccCccccCCcccceeecccCCCCCccC-CccCCCCCC
Q 041519          176 EILSTLLLQHNKYLQ--RIPECFFVHMHGLKVLNLCH-TSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQ  250 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~  250 (521)
                      .+++.|++++|....  .+|..+ +++++|++|++++ |.+. .+|..++++++|++|++++|.....+| .++++.+|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            579999999998444  678765 8999999999995 7776 789999999999999999987434788 899999999


Q ss_pred             EEEeeCCcCc-ccCccccCCCCCcccccccc
Q 041519          251 YLDLEGTWIE-EVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       251 ~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~  280 (521)
                      +|++++|.+. .+|..++.+++|++|++...
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            9999999888 78888888888888876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=6e-16  Score=149.20  Aligned_cols=143  Identities=29%  Similarity=0.429  Sum_probs=108.1

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|..  ..+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+.+++|++|++++|.
T Consensus        15 ~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence            344555666777653  34688899999988888887766788889999998887 666655556888889999998886


Q ss_pred             -CCcc-CccccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519          213 -IEVL-PNSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM  279 (521)
Q Consensus       213 -l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~  279 (521)
                       +..+ |..+..+.+|++|++++|. +..+ | .+..+.+|++|++++|.++.+|.. ++.+++|++|++..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  162 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG  162 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence             7766 6678888889999998876 6655 4 588888999999988888877654 56666666665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=5.3e-16  Score=149.55  Aligned_cols=122  Identities=21%  Similarity=0.284  Sum_probs=102.6

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~  232 (521)
                      .+.++..++.++.+|..+.   ++++.|++++|. +..++...|+.+++|++|++++|.+..+ |..++.+++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGIP---AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SCEEECCSSCCSSCCTTCC---TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEEEcCcCCcccCCcCCC---CCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            3678889999999998754   789999999998 8888877679999999999999999966 7789999999999999


Q ss_pred             cCCCCCcc-C-CccCCCCCCEEEeeCCcCccc-CccccCCCCCccccccc
Q 041519          233 WCGILKRV-P-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFM  279 (521)
Q Consensus       233 ~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~  279 (521)
                      +|..+..+ | .+..+.+|++|++++|.+..+ |..++.+++|++|++..
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  138 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD  138 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC
Confidence            98767877 5 799999999999999988876 44466666666665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=6.8e-16  Score=158.99  Aligned_cols=161  Identities=23%  Similarity=0.244  Sum_probs=131.9

Q ss_pred             EEEecCcccccC-CCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKF-PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..+ +.....+++++.|++++|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|
T Consensus        79 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC
T ss_pred             EEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC
Confidence            444455555554 4456778999999999999999988877799999999999998 88999887899999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc------hH
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA------AE  282 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~  282 (521)
                      .+..+|. .+..+++|++|++++|..+..+|  .+..+.+|++|++++|.++.+|. +..+.+|++|++...      +.
T Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~  236 (452)
T 3zyi_A          158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPG  236 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGG
T ss_pred             CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcc
Confidence            9998765 67899999999999988899998  58999999999999999998874 777777777776544      33


Q ss_pred             HHHhhHhcccceEE
Q 041519          283 EAARLSDRLDTFVG  296 (521)
Q Consensus       283 ~i~~L~~~L~~L~~  296 (521)
                      .+..++ +|+.|++
T Consensus       237 ~~~~l~-~L~~L~L  249 (452)
T 3zyi_A          237 SFHGLS-SLKKLWV  249 (452)
T ss_dssp             GGTTCT-TCCEEEC
T ss_pred             cccCcc-CCCEEEe
Confidence            444455 5555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=5.4e-16  Score=159.16  Aligned_cols=146  Identities=26%  Similarity=0.297  Sum_probs=124.0

Q ss_pred             EEEecCcccccCC-CcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFP-GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p-~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..++ .....+++++.|++++|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus        68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC
T ss_pred             EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC
Confidence            3444555555554 456678899999999999999988877799999999999998 88999877799999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~  280 (521)
                      .+..+|. .+..+++|++|++++|..+..+|  .+..+.+|++|++++|.++.+|. +..+.+|++|++...
T Consensus       147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS
T ss_pred             cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC
Confidence            9997765 67899999999999988899888  58999999999999999999885 777777777766543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.63  E-value=5.7e-15  Score=142.59  Aligned_cols=123  Identities=22%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCccccee
Q 041519          150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSL  229 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  229 (521)
                      ..++++.+++.++.++.+|..+.   +++++|++++|. +..++...|..+++|++|++++|.++.++.. +.+.+|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            45689999999999999998865   689999999998 7777766679999999999999999988764 889999999


Q ss_pred             ecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccc
Q 041519          230 LLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLF  278 (521)
Q Consensus       230 ~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~  278 (521)
                      ++++|. +..+| .+..+.+|++|++++|.++.+|. .++.+++|++|++.
T Consensus        83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~  132 (290)
T 1p9a_G           83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (290)
T ss_dssp             ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             ECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence            999985 88999 78999999999999999998874 36666655555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=4.6e-15  Score=147.43  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             ccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCC
Q 041519          382 LNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNS  461 (521)
Q Consensus       382 l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~  461 (521)
                      ++.+|...+..+++|++|+++++ .++.++.                  ..|..|+.|.+.++.+++.++.   ...+++
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~------------------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~  247 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRT-RIHSLPS------------------YGLENLKKLRARSTYNLKKLPT---LEKLVA  247 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTS-CCCCCCS------------------SSCTTCCEEECTTCTTCCCCCC---TTTCCS
T ss_pred             ccCCCHHHhccCcccchhhcCCC-CcCccCh------------------hhhccchHhhhccCCCcCcCCC---chhCcC
Confidence            34555555677888888888776 4555543                  3477888888888888888775   335678


Q ss_pred             ccEEEEec
Q 041519          462 LQEIEVYN  469 (521)
Q Consensus       462 L~~L~i~~  469 (521)
                      |+.+++.+
T Consensus       248 L~~l~l~~  255 (350)
T 4ay9_X          248 LMEASLTY  255 (350)
T ss_dssp             CCEEECSC
T ss_pred             hhhCcCCC
Confidence            88887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=1.1e-16  Score=156.96  Aligned_cols=118  Identities=18%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      +++++|++++|.+..+++..+..+++|++|++++|. +...++  +..+++|++|++++|.++.+|.    ..+|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence            467777777777777765555577777777777776 554444  4677777777777777665543    367777777


Q ss_pred             ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCc-cccCCCCCccccccc
Q 041519          232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFM  279 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~  279 (521)
                      ++|. +..++ .  .+.+|++|++++|.++.++. .++.+++|++|++..
T Consensus       107 ~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (317)
T 3o53_A          107 ANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL  153 (317)
T ss_dssp             CSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred             CCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence            7765 56555 3  25667777777777776543 456666666665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=4.8e-16  Score=152.34  Aligned_cols=118  Identities=15%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeeccc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW  233 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  233 (521)
                      ++..++..+.+...+..++..+++|++|++++|. +..+++..|+.+++|++|++++|.+...+. ++.+.+|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            3444455555555555556677899999999998 777776667999999999999999987665 89999999999999


Q ss_pred             CCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCccccccc
Q 041519          234 CGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFM  279 (521)
Q Consensus       234 ~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~  279 (521)
                      |. +..+|   ...+|++|++++|.+..++...  +++|++|++..
T Consensus        90 n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~  129 (317)
T 3o53_A           90 NY-VQELL---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN  129 (317)
T ss_dssp             SE-EEEEE---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCS
T ss_pred             Cc-ccccc---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCC
Confidence            86 77666   3389999999999988876532  45555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.60  E-value=1e-14  Score=139.40  Aligned_cols=164  Identities=26%  Similarity=0.390  Sum_probs=132.7

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+++++|++++|.+..++...+..+++|++|++++|. +..++..+|..+++|++|++++|.
T Consensus        20 ~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           20 SVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc
Confidence            4555666777777643  3689999999999999988777789999999999998 888988888899999999999999


Q ss_pred             CCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hH
Q 041519          213 IEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AE  282 (521)
Q Consensus       213 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~  282 (521)
                      +..+|. .+..+.+|++|++++|. +..+|  .++.+.+|++|++++|.++.+|.. ++.+++|++|++...      +.
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence            997775 45789999999999986 77776  488999999999999999988876 678888888887654      23


Q ss_pred             HHHhhHhcccceEEEeccc
Q 041519          283 EAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       283 ~i~~L~~~L~~L~~~~~~~  301 (521)
                      .+..++ +|+.|++..+.+
T Consensus       176 ~~~~l~-~L~~L~L~~N~l  193 (270)
T 2o6q_A          176 AFDKLT-ELKTLKLDNNQL  193 (270)
T ss_dssp             TTTTCT-TCCEEECCSSCC
T ss_pred             HhccCC-CcCEEECCCCcC
Confidence            356677 777777655544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=1.9e-14  Score=138.01  Aligned_cols=118  Identities=24%  Similarity=0.335  Sum_probs=96.2

Q ss_pred             EEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccC
Q 041519          156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWC  234 (521)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~  234 (521)
                      .+...+..+..+|..+.   +++++|++++|. +..++...|.++++|++|++++|.+..++. .++.+.+|++|++++|
T Consensus        11 ~~~c~~~~l~~ip~~l~---~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP---FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSSSC---TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCccccCCCCC---CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            45556667778888764   589999999998 888887667999999999999999997764 7889999999999998


Q ss_pred             CCCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccc
Q 041519          235 GILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLF  278 (521)
Q Consensus       235 ~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~  278 (521)
                      . +..++  .+.++.+|++|++++|.+..++. .++.+++|++|++.
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           87 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             C-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             c-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            6 77665  69999999999999998887765 46666666666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=2.6e-14  Score=141.91  Aligned_cols=237  Identities=17%  Similarity=0.128  Sum_probs=158.8

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCc-cccCCcccceeecc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPN-SVSDLTNLRSLLLR  232 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~-~i~~L~~L~~L~l~  232 (521)
                      +.++.++++++++|..+.   ++++.|++++|+ ++.+|...|.++++|++|+|++|.+. .+|. .+.++.+|+.+...
T Consensus        12 ~~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP---RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC---TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCcC---CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            567778888888888764   578889999888 88888877788999999999998864 5654 56788887765544


Q ss_pred             cCCCCCccC--CccCCCCCCEEEeeCCcCcccCccc-cCCCCCcccccccchHHHHhhHhcccceEEEec-cccchhhhh
Q 041519          233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSLFMAAEEAARLSDRLDTFVGYFS-TLNDFNIYV  308 (521)
Q Consensus       233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~~~~~~~~i~~L~~~L~~L~~~~~-~~~~~~~~~  308 (521)
                      ++..+..+|  .+..+.+|++|++++|.++.+|... ....                   ++..+++... ....+..  
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------------------~l~~l~l~~~~~i~~l~~--  146 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-------------------QKVLLDIQDNINIHTIER--  146 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-------------------SCEEEEEESCTTCCEECT--
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccc-------------------hhhhhhhccccccccccc--
Confidence            434578775  5788999999999998888776531 1111                   2222222110 0000000  


Q ss_pred             hccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEecccCcccccccccCCCcccccccc
Q 041519          309 KSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLR  388 (521)
Q Consensus       309 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~  388 (521)
                                                             ..+ ...+..++.|++++              ++++.+|..
T Consensus       147 ---------------------------------------~~f-~~~~~~l~~L~L~~--------------N~i~~i~~~  172 (350)
T 4ay9_X          147 ---------------------------------------NSF-VGLSFESVILWLNK--------------NGIQEIHNS  172 (350)
T ss_dssp             ---------------------------------------TSS-TTSBSSCEEEECCS--------------SCCCEECTT
T ss_pred             ---------------------------------------cch-hhcchhhhhhcccc--------------ccccCCChh
Confidence                                                   000 01122344554443              233334444


Q ss_pred             hhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEe
Q 041519          389 LLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVY  468 (521)
Q Consensus       389 ~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~  468 (521)
                      .+ ...+|++|.+.++..++.++...+               ..+++|++|++++. +++.++.  +  .|.+|+.|.+.
T Consensus       173 ~f-~~~~L~~l~l~~~n~l~~i~~~~f---------------~~l~~L~~LdLs~N-~l~~lp~--~--~~~~L~~L~~l  231 (350)
T 4ay9_X          173 AF-NGTQLDELNLSDNNNLEELPNDVF---------------HGASGPVILDISRT-RIHSLPS--Y--GLENLKKLRAR  231 (350)
T ss_dssp             SS-TTEEEEEEECTTCTTCCCCCTTTT---------------TTEECCSEEECTTS-CCCCCCS--S--SCTTCCEEECT
T ss_pred             hc-cccchhHHhhccCCcccCCCHHHh---------------ccCcccchhhcCCC-CcCccCh--h--hhccchHhhhc
Confidence            33 345789999988888888865431               46899999999995 6888876  3  46899999999


Q ss_pred             cCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          469 NCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       469 ~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      +|.+++.+|. +..        +++|+.+.+.
T Consensus       232 ~~~~l~~lP~-l~~--------l~~L~~l~l~  254 (350)
T 4ay9_X          232 STYNLKKLPT-LEK--------LVALMEASLT  254 (350)
T ss_dssp             TCTTCCCCCC-TTT--------CCSCCEEECS
T ss_pred             cCCCcCcCCC-chh--------CcChhhCcCC
Confidence            9999999995 444        4559999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=2e-14  Score=135.82  Aligned_cols=164  Identities=24%  Similarity=0.325  Sum_probs=131.1

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+.++.|++++|.+..++...+..+++|++|++++|. +..+++..|..+++|++|++++|.
T Consensus        18 ~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             EEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc
Confidence            3455666777777653  3689999999999999888777789999999999998 777777767899999999999999


Q ss_pred             CCccC-ccccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc------hH
Q 041519          213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA------AE  282 (521)
Q Consensus       213 l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~------~~  282 (521)
                      ++.+| ..++.+.+|++|++++|. +..+| . +..+.+|++|++++|.++.+|. .++.+++|++|++...      +.
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99776 456799999999999985 78887 4 7889999999999999998877 4788888888877654      23


Q ss_pred             HHHhhHhcccceEEEeccc
Q 041519          283 EAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       283 ~i~~L~~~L~~L~~~~~~~  301 (521)
                      .+..++ +|+.|++..+..
T Consensus       174 ~~~~l~-~L~~L~l~~N~~  191 (251)
T 3m19_A          174 AFDRLG-KLQTITLFGNQF  191 (251)
T ss_dssp             TTTTCT-TCCEEECCSCCB
T ss_pred             HHhCCC-CCCEEEeeCCce
Confidence            455666 666666655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.55  E-value=8.4e-15  Score=152.02  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      .+++++|++++|.+..+++..+..+++|++|++++|. +...++  ++.+++|++|++++|.++.+|..    ++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence            3478889999988888876666688889999998887 655555  58888899999988888766542    7888888


Q ss_pred             cccCCCCCccC-CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc
Q 041519          231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~  280 (521)
                      +++|. +..+| .  .+.+|++|++++|.+..+ |..++.+++|++|++...
T Consensus       106 L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A          106 AANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             CCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred             CcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence            88876 66665 3  357888889988888765 445777777777766543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=7.4e-16  Score=150.61  Aligned_cols=245  Identities=18%  Similarity=0.149  Sum_probs=151.2

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCC--CCchhHh------hCCCCCcEEEccCCCCC-ccCccc-
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQ--RIPECFF------VHMHGLKVLNLCHTSIE-VLPNSV-  220 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~------~~l~~L~~L~L~~~~l~-~lp~~i-  220 (521)
                      .++++.+++.+|.+ .+|..+.   ..|+.|++++|. +.  .+|..+.      .++++|++|++++|.+. .+|..+ 
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~---~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFT---DIIKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHH---HHHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc-ccHHHHH---HHHhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34677778888888 7777655   238888888877 42  3555431      16889999999999887 678776 


Q ss_pred             -cCCcccceeecccCCCCCccC-CccCC-----CCCCEEEeeCCcCcccC-ccccCCCCCcccccccchHHHHhhHhccc
Q 041519          221 -SDLTNLRSLLLRWCGILKRVP-SLAKL-----LALQYLDLEGTWIEEVP-EGMEMLENLSHLSLFMAAEEAARLSDRLD  292 (521)
Q Consensus       221 -~~L~~L~~L~l~~~~~l~~lp-~~~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~i~~L~~~L~  292 (521)
                       +.+++|++|++++|. +...| .++.+     .+|++|++++|.+..++ ..++++++|++|++...            
T Consensus       117 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N------------  183 (312)
T 1wwl_A          117 EATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN------------  183 (312)
T ss_dssp             SCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC------------
T ss_pred             HhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC------------
Confidence             788899999999876 66667 56666     88999999999888776 56777776666655543            


Q ss_pred             ceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEecccCcccc
Q 041519          293 TFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASL  372 (521)
Q Consensus       293 ~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~~l~~l  372 (521)
                             .............                                       ....+.|+.|+++++.-    
T Consensus       184 -------~l~~~~~~~~~~~---------------------------------------~~~l~~L~~L~L~~N~l----  213 (312)
T 1wwl_A          184 -------PELGERGLISALC---------------------------------------PLKFPTLQVLALRNAGM----  213 (312)
T ss_dssp             -------TTCHHHHHHHHSC---------------------------------------TTSCTTCCEEECTTSCC----
T ss_pred             -------CcCcchHHHHHHH---------------------------------------hccCCCCCEEECCCCcC----
Confidence                   1111000000000                                       00012344444443310    


Q ss_pred             cccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccccccc
Q 041519          373 NDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICS  452 (521)
Q Consensus       373 ~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~  452 (521)
                             .++...+...+..+++|++|+++++.-....+..               ....+++|++|+++++ +++.++.
T Consensus       214 -------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------~~~~l~~L~~L~Ls~N-~l~~ip~  270 (312)
T 1wwl_A          214 -------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP---------------SCDWPSQLNSLNLSFT-GLKQVPK  270 (312)
T ss_dssp             -------CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS---------------CCCCCTTCCEEECTTS-CCSSCCS
T ss_pred             -------cchHHHHHHHHhcCCCCCEEECCCCcCCcccchh---------------hhhhcCCCCEEECCCC-ccChhhh
Confidence                   0111223333456788888888777432222111               1134678888888884 4666655


Q ss_pred             CCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          453 DNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       453 ~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                        ...  ++|++|+++++ +++.+|. +..        +++|+.|++.
T Consensus       271 --~~~--~~L~~L~Ls~N-~l~~~p~-~~~--------l~~L~~L~L~  304 (312)
T 1wwl_A          271 --GLP--AKLSVLDLSYN-RLDRNPS-PDE--------LPQVGNLSLK  304 (312)
T ss_dssp             --SCC--SEEEEEECCSS-CCCSCCC-TTT--------SCEEEEEECT
T ss_pred             --hcc--CCceEEECCCC-CCCCChh-Hhh--------CCCCCEEecc
Confidence              222  78888888887 4777766 433        4448888877

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.54  E-value=4.9e-14  Score=134.64  Aligned_cols=165  Identities=25%  Similarity=0.337  Sum_probs=136.9

Q ss_pred             EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...+..+..++. ....++++++|++.+|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus        41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS
T ss_pred             EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC
Confidence            44445566666664 46678899999999999999999988889999999999998 88888887899999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------h
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------A  281 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~  281 (521)
                      .++.+|. .++.+++|++|++++|. +..+| . ++.+.+|++|++++|.++.+|.. +..+++|++|++...      +
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence            9997764 56899999999999986 88887 4 89999999999999999988765 788999999988754      2


Q ss_pred             HHHHhhHhcccceEEEecc
Q 041519          282 EEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       282 ~~i~~L~~~L~~L~~~~~~  300 (521)
                      ..++.++ +|+.|++..+.
T Consensus       199 ~~~~~l~-~L~~L~l~~N~  216 (270)
T 2o6q_A          199 GAFDSLE-KLKMLQLQENP  216 (270)
T ss_dssp             TTTTTCT-TCCEEECCSSC
T ss_pred             HHhcccc-CCCEEEecCCC
Confidence            2356667 77777665443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=1.5e-14  Score=150.14  Aligned_cols=98  Identities=18%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEE
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLD  253 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~  253 (521)
                      .+++|++|++++|. +..+++..|+.+++|++|+|++|.+...++ ++.+++|++|++++|. +..+|   ...+|++|+
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEE
T ss_pred             cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEE
Confidence            45689999999998 777776667999999999999999986665 8999999999999985 77777   228999999


Q ss_pred             eeCCcCcccCccccCCCCCccccccc
Q 041519          254 LEGTWIEEVPEGMEMLENLSHLSLFM  279 (521)
Q Consensus       254 l~~~~l~~lp~~i~~l~~L~~L~~~~  279 (521)
                      +++|.+..+|..  .+++|++|++..
T Consensus       106 L~~N~l~~~~~~--~l~~L~~L~L~~  129 (487)
T 3oja_A          106 AANNNISRVSCS--RGQGKKNIYLAN  129 (487)
T ss_dssp             CCSSCCCCEEEC--CCSSCEEEECCS
T ss_pred             CcCCcCCCCCcc--ccCCCCEEECCC
Confidence            999998887653  355566555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=6.7e-14  Score=130.17  Aligned_cols=143  Identities=24%  Similarity=0.392  Sum_probs=117.4

Q ss_pred             EEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519          134 MVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI  213 (521)
Q Consensus       134 ~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l  213 (521)
                      +...+..+..+|...  .+++++|++++|.+..+++..+..+++|++|++++|. +..+|...|..+++|++|++++|.+
T Consensus        24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC
Confidence            445566677777643  3789999999999998877767788999999999998 7888887778999999999999999


Q ss_pred             CccCcc-ccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519          214 EVLPNS-VSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA  280 (521)
Q Consensus       214 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~  280 (521)
                      +.+|.. +..+.+|++|++++|. +..+| .+..+.+|++|++++|.++.+|.. +..+.+|++|++...
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            877654 5789999999999976 88898 889999999999999988888754 677777777776544

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.54  E-value=7.9e-16  Score=162.04  Aligned_cols=117  Identities=17%  Similarity=0.207  Sum_probs=93.4

Q ss_pred             ChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHHHH
Q 041519            7 PALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFL   86 (521)
Q Consensus         7 p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cfl   86 (521)
                      ++++++++++|+++|+|+||||+++|+.|+.+ +   |+.+ +.+... .+. ...+++.+++++||++|| .++|.||+
T Consensus       312 ~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~-l~~-~~~~~i~~~l~~Sy~~L~-~~lk~~f~  383 (549)
T 2a5y_B          312 GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNK-LES-RGLVGVECITPYSYKSLA-MALQRCVE  383 (549)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHH-HHH-HCSSTTCCCSSSSSSSHH-HHHHHHHH
T ss_pred             chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHH-hhc-ccHHHHHHHHhccccccc-HHHHHHHh
Confidence            47889999999999999999999999999875 3   5443 333221 111 013578899999999999 89999999


Q ss_pred             -----------HHHH-------------Hh------------------HHHHHHHHccccccccCC--CccccchHHHHH
Q 041519           87 -----------YCAL-------------GH------------------TILNRLVNCCLLESAKDG--SCVKMHDLIRDM  122 (521)
Q Consensus        87 -----------~~s~-------------g~------------------~~~~~L~~~~l~~~~~~~--~~~~mhdli~dl  122 (521)
                                 |||+             ++                  .||++|+++||++.+..+  .+|+|||++|++
T Consensus       384 ~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~  463 (549)
T 2a5y_B          384 VLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMF  463 (549)
T ss_dssp             TSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHH
T ss_pred             ccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHH
Confidence                       9998             33                  389999999999987643  579999999999


Q ss_pred             HHHHhccCC
Q 041519          123 ALRITSKSP  131 (521)
Q Consensus       123 ~~~i~~~~~  131 (521)
                      |+.++.+++
T Consensus       464 a~~~~~~~~  472 (549)
T 2a5y_B          464 LKHVVDAQT  472 (549)
T ss_dssp             HHTTSCTHH
T ss_pred             HHHHHHHHH
Confidence            998886654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.52  E-value=6.4e-14  Score=136.49  Aligned_cols=143  Identities=22%  Similarity=0.263  Sum_probs=97.0

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      ++++++|++.++.+..++. + ..+++|++|++++|. +..++.  +..+++|++|++++|.+..+| .++.+.+|++|+
T Consensus        40 l~~L~~L~l~~~~i~~l~~-~-~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEG-V-QYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccCchh-h-hccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            4567777777777777652 3 367777777777776 666666  477777777777777777665 467777777777


Q ss_pred             cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecccc
Q 041519          231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~  302 (521)
                      +++|. +..+|.+..+.+|++|++++|.+..++. ++.+++|++|++..+    ...++.++ +|+.|++..+.+.
T Consensus       114 l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~  186 (308)
T 1h6u_A          114 LTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDNKIS  186 (308)
T ss_dssp             CTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC
T ss_pred             CCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCC-CCCEEECCCCccC
Confidence            77765 6666667777777777777777776665 666777777766544    11255666 6666666555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=8.7e-16  Score=158.53  Aligned_cols=67  Identities=22%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccc-----ccccCCCcccCCCccEE
Q 041519          391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFK-----SICSDNGVLVCNSLQEI  465 (521)
Q Consensus       391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~-----~~~~~~~~~~~p~L~~L  465 (521)
                      ..+++|++|+++++. +.......       +...   -....++|++|++.+|. +.     .++.  ....+++|++|
T Consensus       338 ~~~~~L~~L~Ls~n~-i~~~~~~~-------l~~~---l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~L~~L  403 (461)
T 1z7x_W          338 AQNRFLLELQISNNR-LEDAGVRE-------LCQG---LGQPGSVLRVLWLADCD-VSDSSCSSLAA--TLLANHSLREL  403 (461)
T ss_dssp             HHCSSCCEEECCSSB-CHHHHHHH-------HHHH---HTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCCCCCEE
T ss_pred             hhCCCccEEEccCCc-cccccHHH-------HHHH---HcCCCCceEEEECCCCC-CChhhHHHHHH--HHHhCCCccEE
Confidence            566788888887773 33221100       0000   00125688888888763 44     2332  23346888888


Q ss_pred             EEecCC
Q 041519          466 EVYNCP  471 (521)
Q Consensus       466 ~i~~C~  471 (521)
                      ++++|+
T Consensus       404 ~l~~N~  409 (461)
T 1z7x_W          404 DLSNNC  409 (461)
T ss_dssp             ECCSSS
T ss_pred             ECCCCC
Confidence            888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.52  E-value=2.4e-14  Score=152.52  Aligned_cols=146  Identities=16%  Similarity=0.108  Sum_probs=101.2

Q ss_pred             ccCCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCCCc----hhHhhCCCCCcEEEccCCCCCccCcccc
Q 041519          150 WEENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQRIP----ECFFVHMHGLKVLNLCHTSIEVLPNSVS  221 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~~lp~~i~  221 (521)
                      .++++++|++.+|.+......    +...+++|++|++++|. +..+.    ..++.++++|+.|++++|.+..+|..++
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            457888888888876543221    22356788888888877 44222    2234678888888888888877787788


Q ss_pred             CCcccceeecccCCCC---CccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-------hHHHHhhHhc
Q 041519          222 DLTNLRSLLLRWCGIL---KRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLSDR  290 (521)
Q Consensus       222 ~L~~L~~L~l~~~~~l---~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~~~  290 (521)
                      .+++|++|+++++...   ...+ .+..+.+|+.|+++++....+|..+..+++|++|++..+       ...++.++ +
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-N  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-T
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-C
Confidence            8888888888753322   2233 567778888888877766677777777888888887655       12346677 8


Q ss_pred             ccceEEE
Q 041519          291 LDTFVGY  297 (521)
Q Consensus       291 L~~L~~~  297 (521)
                      |++|++.
T Consensus       320 L~~L~L~  326 (592)
T 3ogk_B          320 LEVLETR  326 (592)
T ss_dssp             CCEEEEE
T ss_pred             CCEEecc
Confidence            8888776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=4.3e-14  Score=136.39  Aligned_cols=163  Identities=23%  Similarity=0.234  Sum_probs=133.7

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .++++.|++++|.+..++...+..+++|+.|++++|. +..++..  +.+++|++|++++|.
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           14 EVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--GTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--SCCTTCCEEECCSSC
T ss_pred             EEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--CCCCcCCEEECCCCc
Confidence            3445666777777644  3689999999999998877767799999999999998 8887763  789999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc-----h-HH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA-----A-EE  283 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~-----~-~~  283 (521)
                      +..+|..+..+++|++|++++|. +..+|  .+..+.+|++|++++|.++.+|.+ +..+++|++|++...     + ..
T Consensus        89 l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  167 (290)
T 1p9a_G           89 LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (290)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence            99999999999999999999986 77876  589999999999999999988876 577888888887654     2 23


Q ss_pred             HHhhHhcccceEEEecccc
Q 041519          284 AARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       284 i~~L~~~L~~L~~~~~~~~  302 (521)
                      +..++ +|+.|++..+.+.
T Consensus       168 ~~~l~-~L~~L~L~~N~l~  185 (290)
T 1p9a_G          168 LNGLE-NLDTLLLQENSLY  185 (290)
T ss_dssp             TTTCT-TCCEEECCSSCCC
T ss_pred             hcCcC-CCCEEECCCCcCC
Confidence            45677 7777776655443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=1.6e-13  Score=126.81  Aligned_cols=144  Identities=22%  Similarity=0.315  Sum_probs=118.8

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .++++.|++.+|.+..++...+..+++|+.|++++|. +..+++..|.++++|++|+|++|.
T Consensus        15 ~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc
Confidence            3455667777888643  3689999999999999998777789999999999998 777765556999999999999999


Q ss_pred             CCccCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519          213 IEVLPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA  280 (521)
Q Consensus       213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~  280 (521)
                      ++.+|.. +..+.+|++|++++|. +..++  .+..+.+|++|++++|.++.+|.. +..+++|++|++...
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            9988865 5789999999999986 77764  689999999999999999988764 777777777766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=3.4e-13  Score=123.34  Aligned_cols=142  Identities=27%  Similarity=0.385  Sum_probs=118.0

Q ss_pred             EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      ...+..+..+|..  ..+++++|++++|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|.++
T Consensus        13 ~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           13 ECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             ECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCC
Confidence            3445556666653  34689999999999999998877789999999999998 88888887789999999999999999


Q ss_pred             ccCcc-ccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519          215 VLPNS-VSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA  280 (521)
Q Consensus       215 ~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~  280 (521)
                      .+|.. ++.+.+|++|++++|. +..+| . +..+.+|++|++++|.++.+|.. +..+++|++|++...
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            87754 6899999999999986 77777 4 78999999999999999888775 667777777766543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=2.3e-13  Score=132.59  Aligned_cols=176  Identities=19%  Similarity=0.255  Sum_probs=142.0

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..++ ....++++++|++++|.+..++.  +..+++|++|++++|. +..++.  +..+++|++|++++|.
T Consensus        45 ~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           45 TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEECTTSC
T ss_pred             EEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCchh--hcCCCCCCEEECCCCC
Confidence            3445556666666 45677899999999999999887  4589999999999998 888764  5899999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLS  288 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~  288 (521)
                      ++.+|. ++.+++|++|++++|. +..++.++.+.+|++|++++|.++.++. +..+++|++|++...    ...+..++
T Consensus       119 l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~  195 (308)
T 1h6u_A          119 ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLP  195 (308)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCC
Confidence            998876 8999999999999986 8888778899999999999999998877 889999999988755    22377888


Q ss_pred             hcccceEEEeccccchhhhhhccCCCCCCcceee
Q 041519          289 DRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLL  322 (521)
Q Consensus       289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~  322 (521)
                       +|+.|++..+.+.....    ...+.+|+.+.+
T Consensus       196 -~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l  224 (308)
T 1h6u_A          196 -NLIEVHLKNNQISDVSP----LANTSNLFIVTL  224 (308)
T ss_dssp             -TCCEEECTTSCCCBCGG----GTTCTTCCEEEE
T ss_pred             -CCCEEEccCCccCcccc----ccCCCCCCEEEc
Confidence             89999887666554432    333445555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.49  E-value=4e-14  Score=132.63  Aligned_cols=198  Identities=17%  Similarity=0.220  Sum_probs=146.4

Q ss_pred             cccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC-CCCCccC-c
Q 041519          141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-TSIEVLP-N  218 (521)
Q Consensus       141 ~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~  218 (521)
                      +..+|.   ..+++++|++++|.++.++...+..+++|++|++++|..++.+++..|..+++|++|++++ |.++.+| .
T Consensus        23 l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            566776   4458999999999999999877778999999999999657888876678999999999998 8899776 4


Q ss_pred             cccCCcccceeecccCCCCCccCCccCCCCCC---EEEeeCC-cCcccCcc-ccCCCCCc-ccccccc-----hHHHHhh
Q 041519          219 SVSDLTNLRSLLLRWCGILKRVPSLAKLLALQ---YLDLEGT-WIEEVPEG-MEMLENLS-HLSLFMA-----AEEAARL  287 (521)
Q Consensus       219 ~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~~~~~-----~~~i~~L  287 (521)
                      .+..+++|++|++++|. +..+|.++.+.+|+   +|++++| .++.+|.. +..+++|+ +|++...     +......
T Consensus       100 ~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~  178 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG  178 (239)
T ss_dssp             SEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred             HhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence            67899999999999986 78888888888888   9999999 99988875 78899999 8887643     3333334


Q ss_pred             HhcccceEEEecc-ccchhhhhhccCCC-CCCcceeeeecCCCCCCccccceeeeeeeeeec
Q 041519          288 SDRLDTFVGYFST-LNDFNIYVKSTDGR-GSKNYCLLLSASGKRGFLEVDKSVRLFACKICE  347 (521)
Q Consensus       288 ~~~L~~L~~~~~~-~~~~~~~~~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~  347 (521)
                      + +|+.|++..+. +..+...  ....+ .+|+.+.+.....  ...+.....+|+.|.+.+
T Consensus       179 ~-~L~~L~L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N~l--~~l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          179 T-KLDAVYLNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSV--TALPSKGLEHLKELIARN  235 (239)
T ss_dssp             C-EEEEEECTTCTTCCEECTT--TTTTCSBCCSEEECTTCCC--CCCCCTTCTTCSEEECTT
T ss_pred             C-CCCEEEcCCCCCcccCCHH--HhhccccCCcEEECCCCcc--ccCChhHhccCceeeccC
Confidence            6 88888876663 5443221  12234 5666666543222  222223344677776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=4.6e-13  Score=126.34  Aligned_cols=146  Identities=25%  Similarity=0.340  Sum_probs=125.6

Q ss_pred             EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...++.+..++. ....++++++|++++|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|
T Consensus        39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC
Confidence            44455556655544 45667899999999999999998877799999999999998 88888887899999999999999


Q ss_pred             CCCccCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc
Q 041519          212 SIEVLPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA  280 (521)
Q Consensus       212 ~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~  280 (521)
                      .++.+|.. ++.+.+|++|++++|. +..+|  .++.+.+|++|++++|.++.+|. .+..+++|++|++...
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            99988765 5789999999999985 88887  58999999999999999998876 5888999999988765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.47  E-value=8.6e-14  Score=135.89  Aligned_cols=109  Identities=21%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             cCCccEEEeecCCCC-CCCCCcC-CCCCCccEEEcccCcCCCCCchhHhhCC-----CCCcEEEccCCCCCccC-ccccC
Q 041519          151 EENLERVSLMENDFE-EIPSNMS-PHCEILSTLLLQHNKYLQRIPECFFVHM-----HGLKVLNLCHTSIEVLP-NSVSD  222 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~-~l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~l~~lp-~~i~~  222 (521)
                      ++++++|++++|.+. .+|..++ ..+++|++|++++|. +..+|..+ +.+     ++|++|++++|.+..++ ..++.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            456677777777666 3555442 466677777777666 55554433 444     66777777777666554 56666


Q ss_pred             CcccceeecccCCCCCc--cC-Cc--cCCCCCCEEEeeCCcCcc
Q 041519          223 LTNLRSLLLRWCGILKR--VP-SL--AKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       223 L~~L~~L~l~~~~~l~~--lp-~~--~~l~~L~~L~l~~~~l~~  261 (521)
                      +++|++|++++|.....  +| .+  +.+.+|++|++++|.++.
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence            66777777766653322  23 23  666667777776666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.47  E-value=3.4e-13  Score=128.87  Aligned_cols=126  Identities=31%  Similarity=0.490  Sum_probs=68.0

Q ss_pred             cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccc
Q 041519          149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLR  227 (521)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~  227 (521)
                      ..++++++|++.+|.+..++ .+ ..+++|++|++++|. +..++...|+.+++|++|++++|.+..+|.. ++.+.+|+
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            34455666666666555543 22 355566666666655 5555554445566666666666655544432 45556666


Q ss_pred             eeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519          228 SLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF  278 (521)
Q Consensus       228 ~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~  278 (521)
                      +|++++|. +..+|  .++.+.+|++|++++|.++.+|.. ++.+++|++|++.
T Consensus       137 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          137 YLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            66666553 44554  245566666666666655554443 3445555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=4.3e-13  Score=123.83  Aligned_cols=144  Identities=23%  Similarity=0.325  Sum_probs=110.4

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCC-CCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIP-SNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...+..+..+|...  ...+++|++++|.+..++ ...+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence            3445566667777643  346788999999888874 4555688899999998888 77777766688899999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~  280 (521)
                      .++.+|. .++.+.+|++|++++|. +..+ | .+..+.+|++|++++|.++.+ |..+..+++|++|++...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            8887764 47788899999999876 6666 4 688889999999999988876 666777777777766543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=2.1e-13  Score=123.71  Aligned_cols=144  Identities=13%  Similarity=0.199  Sum_probs=115.0

Q ss_pred             cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cCccccCCcccc
Q 041519          149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLR  227 (521)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~  227 (521)
                      ..++++++|++++|.+..+| .+ ..+++|++|++++|. +..++.  +..+++|++|++++|.++. .|..++.+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCC-CSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCC-CCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            44568999999999999888 44 488999999999995 766653  5889999999999999884 688899999999


Q ss_pred             eeecccCCCCCc-cC-CccCCCCCCEEEeeCCc-CcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecc
Q 041519          228 SLLLRWCGILKR-VP-SLAKLLALQYLDLEGTW-IEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       228 ~L~l~~~~~l~~-lp-~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~  300 (521)
                      +|++++|. +.. .| .++.+.+|++|++++|. ++.+| .++.+++|++|++..+    ...+..++ +|+.|++..+.
T Consensus       116 ~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~-~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCS-SCCEEEECBC-
T ss_pred             EEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCC-CCCEEEeeCcc
Confidence            99999987 554 56 78999999999999996 88887 5888888888877654    22556666 67766665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.45  E-value=8e-14  Score=137.50  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=102.1

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCC--CchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccce
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR--IPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRS  228 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~  228 (521)
                      +.++.+++.+|.+...+...+ .+++|++|++++|. +..  ++. ++..+++|++|++++|.+. ..|..++.+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~-l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSV-IEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCE-ECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchhhc-cCCCCCEEEccCCC-cCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            578999999999888777766 78999999999997 543  444 4589999999999999887 67788889999999


Q ss_pred             eecccCCCCCc--cC-CccCCCCCCEEEeeCC-cCcc--cCccccCCC-CCcccccccc
Q 041519          229 LLLRWCGILKR--VP-SLAKLLALQYLDLEGT-WIEE--VPEGMEMLE-NLSHLSLFMA  280 (521)
Q Consensus       229 L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~~~~~  280 (521)
                      |++++|..+..  +| .+..+++|++|++++| .++.  ++..++.++ +|++|++..+
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            99999866774  67 5888999999999999 8874  566677777 7777766543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=7.1e-13  Score=132.11  Aligned_cols=164  Identities=24%  Similarity=0.289  Sum_probs=134.5

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCC-CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSP-HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...+..+..+|..  ....++.|++++|.++.++...+. .+++|+.|++++|. +..+++..|..+++|++|+|++|
T Consensus        22 ~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC
Confidence            455566777888864  345799999999999999998877 89999999999998 88888776799999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCcccCccc----cCCCCCcccccccc----
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEVPEGM----EMLENLSHLSLFMA----  280 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~~~~~----  280 (521)
                      .++.+|. .+..+.+|++|++++|. +..+ | .+..+.+|++|++++|.++.+|..+    ..+.+|++|++...    
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            9997765 57899999999999987 7776 4 7999999999999999999999875    57889999988754    


Q ss_pred             --hHHHHhhHhc--ccceEEEeccc
Q 041519          281 --AEEAARLSDR--LDTFVGYFSTL  301 (521)
Q Consensus       281 --~~~i~~L~~~--L~~L~~~~~~~  301 (521)
                        ...+..++ .  ++.|++..+..
T Consensus       178 l~~~~~~~l~-~~~l~~l~l~~N~~  201 (361)
T 2xot_A          178 LPLTDLQKLP-AWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCHHHHHHSC-HHHHTTEECCSSCE
T ss_pred             cCHHHhhhcc-HhhcceEEecCCCc
Confidence              34566666 5  36777655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=4.4e-14  Score=150.53  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             CCccceeecCC---cccccccccCC----CcccCCCccEEEEecCCC
Q 041519          433 LPRLKKLHLED---LREFKSICSDN----GVLVCNSLQEIEVYNCPK  472 (521)
Q Consensus       433 f~~L~~L~l~~---~~~L~~~~~~~----~~~~~p~L~~L~i~~C~~  472 (521)
                      +++|+.|++.+   |..+...+...    ....+++|++|++++|..
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG  448 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            56667776653   33444322110    022356777777766653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=4.6e-13  Score=124.49  Aligned_cols=141  Identities=25%  Similarity=0.309  Sum_probs=118.4

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~  232 (521)
                      .+.++..++.+..+|..+.   ++|++|++++|. +..+++..|..+++|++|++++|.+..+|.. +..+.+|++|+++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCC---CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            5678999999999998765   899999999998 7777666679999999999999999988754 5899999999999


Q ss_pred             cCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEecc
Q 041519          233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~  300 (521)
                      +|. +..+|  .+..+.+|++|++++|.++.+|..+..+.+|++|++...      +..+..++ +|+.|++..+.
T Consensus        97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~  170 (229)
T 3e6j_A           97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLFGNP  170 (229)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSC
T ss_pred             CCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEeeCCC
Confidence            985 88887  478999999999999999999999999999999887654      23355666 66666654443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.43  E-value=8.6e-13  Score=127.34  Aligned_cols=160  Identities=22%  Similarity=0.292  Sum_probs=90.4

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      ++++++|++.++.+..++. + ..+++|++|++++|. +..+++  +..+++|++|++++|.+..+|. ++.+.+|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            3456666666666665543 2 255666666666665 555554  3566666666666666655543 56666666666


Q ss_pred             cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhh
Q 041519          231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNI  306 (521)
Q Consensus       231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~  306 (521)
                      +++|. +..++.+..+.+|++|++++|.++.+ ..++.+++|++|++..+    ...++.++ +|+.|++..+.+..+. 
T Consensus       119 L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~-~L~~L~L~~N~i~~l~-  194 (291)
T 1h6t_A          119 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDLR-  194 (291)
T ss_dssp             CTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCBCG-
T ss_pred             CCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCC-ccCEEECCCCcCCCCh-
Confidence            66654 55555556666666666666666555 34556666666655433    11155566 6666666555544432 


Q ss_pred             hhhccCCCCCCcceeee
Q 041519          307 YVKSTDGRGSKNYCLLL  323 (521)
Q Consensus       307 ~~~~~~~l~~L~~l~~~  323 (521)
                         ....+.+|+.+.+.
T Consensus       195 ---~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          195 ---ALAGLKNLDVLELF  208 (291)
T ss_dssp             ---GGTTCTTCSEEEEE
T ss_pred             ---hhccCCCCCEEECc
Confidence               23345555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=7.9e-13  Score=127.59  Aligned_cols=160  Identities=23%  Similarity=0.300  Sum_probs=135.4

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..++. ...++++++|++++|.+..++.  +..+++|++|++++|. +..++.  ++.+++|++|++++|.
T Consensus        50 ~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           50 QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             EEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTSC
T ss_pred             EEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCCc
Confidence            44556666666654 5667899999999999999887  4589999999999998 777766  5899999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLS  288 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~  288 (521)
                      +..++ .++.+++|++|++++|. +..++.++.+.+|++|++++|.+..++. +..+++|++|++...    ...+..++
T Consensus       124 i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~  200 (291)
T 1h6t_A          124 ISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK  200 (291)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred             CCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCC
Confidence            99875 58899999999999986 8888889999999999999999998876 899999999988755    23478888


Q ss_pred             hcccceEEEecccc
Q 041519          289 DRLDTFVGYFSTLN  302 (521)
Q Consensus       289 ~~L~~L~~~~~~~~  302 (521)
                       +|+.|++..+.+.
T Consensus       201 -~L~~L~l~~n~i~  213 (291)
T 1h6t_A          201 -NLDVLELFSQECL  213 (291)
T ss_dssp             -TCSEEEEEEEEEE
T ss_pred             -CCCEEECcCCccc
Confidence             9999998776553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.42  E-value=1.9e-13  Score=158.15  Aligned_cols=122  Identities=19%  Similarity=0.268  Sum_probs=102.1

Q ss_pred             CChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCC-----CchhhHHHHHHHHhHhcCCchh
Q 041519            6 VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-----NDVDTKVFGRLEFSYHRLKDEK   80 (521)
Q Consensus         6 ~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~lSY~~L~~~~   80 (521)
                      .++++.+++++|+++|+|+||||+++|+.|+.+.  ..|+..++.+.......     ....+.+..++.+||+.|| .+
T Consensus       302 ~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~  378 (1249)
T 3sfz_A          302 KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-ED  378 (1249)
T ss_dssp             CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TT
T ss_pred             ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCC-HH
Confidence            4556678899999999999999999999999853  47999999986654332     1123579999999999999 89


Q ss_pred             HHHHHHHHHH----------------------HhHHHHHHHHccccccccCC--CccccchHHHHHHHHHhccC
Q 041519           81 LQQCFLYCAL----------------------GHTILNRLVNCCLLESAKDG--SCVKMHDLIRDMALRITSKS  130 (521)
Q Consensus        81 lk~cfl~~s~----------------------g~~~~~~L~~~~l~~~~~~~--~~~~mhdli~dl~~~i~~~~  130 (521)
                      .|+||+|||+                      ++.++++|+++||++....+  ..|+|||++|++++..+.++
T Consensus       379 ~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          379 IKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             THHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            9999999997                      67899999999999977654  35999999999999887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.41  E-value=5.5e-13  Score=123.14  Aligned_cols=140  Identities=26%  Similarity=0.383  Sum_probs=117.5

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeeccc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRW  233 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~  233 (521)
                      +.++..++.++.+|..+.   ++++.|++++|. +..++...|..+++|++|++++|.+..+ |..+..+.+|++|++++
T Consensus        14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC---TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccC---cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            678889999999998765   689999999998 8888887679999999999999999966 78899999999999999


Q ss_pred             CCCCCccC-C-ccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hHHHHhhHhcccceEEEecc
Q 041519          234 CGILKRVP-S-LAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       234 ~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~  300 (521)
                      |. +..+| . +..+.+|++|++++|.++.+ |..+..+.+|++|++...      +..++.++ +|+.|++..+.
T Consensus        90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~  163 (220)
T 2v9t_B           90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNP  163 (220)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSC
T ss_pred             Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCCC
Confidence            86 88888 4 78999999999999999977 456888888888887654      23356666 77777665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.41  E-value=2.2e-12  Score=123.26  Aligned_cols=145  Identities=28%  Similarity=0.449  Sum_probs=121.5

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...++.+..++ ....++++++|++++|.+..++...+..+++|++|++++|. +..+++..|+.+++|++|++++|.
T Consensus        67 ~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A           67 YLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             EEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc
Confidence            4444555555544 45667899999999999999998877799999999999998 888888877999999999999999


Q ss_pred             CCccCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519          213 IEVLPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA  280 (521)
Q Consensus       213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~  280 (521)
                      ++.+|.. ++.+.+|++|++++|. +..+|  .++.+.+|++|++++|.++.+|.. ++.+++|++|++...
T Consensus       145 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          145 LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            9977654 5899999999999986 77777  478999999999999999887765 677887777776554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.41  E-value=4.3e-13  Score=132.25  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             CccEEEeecCCCCCCCCCcCCCC--CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-c-cCccccCCcccce
Q 041519          153 NLERVSLMENDFEEIPSNMSPHC--EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-V-LPNSVSDLTNLRS  228 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~-lp~~i~~L~~L~~  228 (521)
                      .++++++.++.+.  + .....+  ++++.|++.+|. +...+..+ ..+++|++|++++|.+. . +|..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~--~-~~~~~~~~~~l~~L~l~~n~-l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH--P-DVTGRLLSQGVIAFRCPRSF-MDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC--H-HHHHHHHHTTCSEEECTTCE-ECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC--H-HHHHhhhhccceEEEcCCcc-ccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4778888877654  2 222244  678888888887 55544444 57888888888888776 2 6777778888888


Q ss_pred             eecccCCCCCccC-CccCCCCCCEEEeeCC-cCcc--cCccccCCCCCccc
Q 041519          229 LLLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEE--VPEGMEMLENLSHL  275 (521)
Q Consensus       229 L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L  275 (521)
                      |++++|......| .++.+++|++|++++| .++.  +|..++.+++|++|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L  173 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  173 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence            8888875333455 6777888888888888 5552  34333333333333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=5.6e-13  Score=123.05  Aligned_cols=142  Identities=19%  Similarity=0.259  Sum_probs=119.1

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCC-chhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeec
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRI-PECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLL  231 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l  231 (521)
                      .+.++++++.+..+|..+.   ..++.|++++|. +..+ +..+|+.+++|++|++++|.++.++. .++.+.+|++|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP---QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcccCccCCC---CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            4689999999999998765   567899999998 7776 45567999999999999999997765 7899999999999


Q ss_pred             ccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hHHHHhhHhcccceEEEeccc
Q 041519          232 RWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       232 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~  301 (521)
                      ++|. +..+|  .+..+.+|++|++++|.++.+ |..+..+.+|++|++...      +..++.++ +|+.|++..+..
T Consensus        89 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l  165 (220)
T 2v70_A           89 TSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPF  165 (220)
T ss_dssp             CSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCE
T ss_pred             CCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCC
Confidence            9986 77776  499999999999999999977 667889999999988654      55677777 888887765544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=6.8e-13  Score=126.05  Aligned_cols=143  Identities=18%  Similarity=0.215  Sum_probs=114.2

Q ss_pred             ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519          148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR  227 (521)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~  227 (521)
                      ...++++++|++.+|.+..++ .+ ..+++|+.|++++|. +..+++  ++.+++|++|++++|.++.+|....  .+|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred             hhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence            445678999999999999887 44 478999999999998 888887  5899999999999999998876433  8999


Q ss_pred             eeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecc
Q 041519          228 SLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFST  300 (521)
Q Consensus       228 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~  300 (521)
                      +|++++|. +..+|.++.+.+|++|++++|.++.+| .++.+++|++|++...    ...+..++ +|+.|++..+.
T Consensus       110 ~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~l~~N~  183 (263)
T 1xeu_A          110 RLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLK-KVNWIDLTGQK  183 (263)
T ss_dssp             EEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCC-CCCEEEEEEEE
T ss_pred             EEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCC-CCCEEeCCCCc
Confidence            99999985 888888889999999999999988886 5778888888877654    23345555 66666655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.40  E-value=1.1e-12  Score=118.91  Aligned_cols=142  Identities=15%  Similarity=0.272  Sum_probs=120.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCC-CchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR-IPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...+..+..+| ....++++++|++++|.+..++ . +..+++|++|++++|. +.. .+.. ++.+++|++|++++|
T Consensus        48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           48 YITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGKD-VTSDKIPN-LSGLTSLTLLDISHS  122 (197)
T ss_dssp             EEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECTT-CBGGGSCC-CTTCTTCCEEECCSS
T ss_pred             EEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECCc-cCcccChh-hcCCCCCCEEEecCC
Confidence            3445566677777 5677889999999999887765 3 3489999999999998 554 4444 589999999999999


Q ss_pred             CCC-ccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519          212 SIE-VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       212 ~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~  280 (521)
                      .+. ..|..++.+++|++|++++|..+..+|.+..+++|++|++++|.+..++ .+..+++|++|++...
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence            998 4678899999999999999876888888999999999999999999887 7899999999988754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.36  E-value=1.1e-12  Score=115.58  Aligned_cols=124  Identities=23%  Similarity=0.202  Sum_probs=99.9

Q ss_pred             CCccEEEeecCCCC--CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cCccccCCcccce
Q 041519          152 ENLERVSLMENDFE--EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLRS  228 (521)
Q Consensus       152 ~~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~  228 (521)
                      +++++|++.+|.+.  .+|..+ ..+++|++|++++|. +..+ .. ++.+++|++|++++|.+.. +|..++.+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVG-LISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSC-CCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCC-CCCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            57899999999988  777664 478999999999988 7766 33 5889999999999999886 7776777999999


Q ss_pred             eecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCc----cccCCCCCcccccccc
Q 041519          229 LLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPE----GMEMLENLSHLSLFMA  280 (521)
Q Consensus       229 L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~  280 (521)
                      |++++|. +..+|   .+..+.+|++|++++|.+..+|.    .+..+++|++|++..+
T Consensus       100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            9999985 77764   58889999999999998888776    5667777777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.36  E-value=8.6e-14  Score=143.52  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             hCCCCCcEEEccCCCCCc-cCcccc-----CCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCcCc
Q 041519          198 VHMHGLKVLNLCHTSIEV-LPNSVS-----DLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       198 ~~l~~L~~L~L~~~~l~~-lp~~i~-----~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~  260 (521)
                      ..+++|++|++++|.+.. .+..+.     ...+|++|++++|. +..     ++ .+..+++|++|++++|.+.
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            455555555555554431 111111     13345555555543 322     22 2344455555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=3.5e-14  Score=151.30  Aligned_cols=127  Identities=16%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             cCCccEEEeecCCCCCCC-CCcCCCCCCccEEEcccCcCCCCC-chhHhhCCCCCcEEEccCCCCCc-----cCccccCC
Q 041519          151 EENLERVSLMENDFEEIP-SNMSPHCEILSTLLLQHNKYLQRI-PECFFVHMHGLKVLNLCHTSIEV-----LPNSVSDL  223 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~L  223 (521)
                      .+++++|++.++.+.... ..+...+++|++|++.+|..+... ...++..+++|++|++++|.+..     ++.....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            457788888877655321 112224678888888877434331 22334577888888888776442     23323356


Q ss_pred             cccceeecccCC-CCC--ccC-CccCCCCCCEEEeeCC-cCcccCccccCCCCCccccc
Q 041519          224 TNLRSLLLRWCG-ILK--RVP-SLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSL  277 (521)
Q Consensus       224 ~~L~~L~l~~~~-~l~--~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~  277 (521)
                      ++|++|++++|. .+.  .++ -+.++++|++|++++| .+..+|..+..+++|++|.+
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            678888888764 111  122 1345678888888887 66666666677777777764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=7.6e-13  Score=114.11  Aligned_cols=122  Identities=21%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             CCccEEEeecCCCC--CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cCccccCCcccce
Q 041519          152 ENLERVSLMENDFE--EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLRS  228 (521)
Q Consensus       152 ~~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~  228 (521)
                      +++++|++++|.+.  .+|..+ ..+++|++|++++|. +..+ . .++.+++|++|++++|.+.. +|..++.+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVG-LTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSC-CCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCC-CCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            58999999999998  787754 489999999999998 7777 3 35899999999999999996 7877778999999


Q ss_pred             eecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCc----cccCCCCCcccccc
Q 041519          229 LLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPE----GMEMLENLSHLSLF  278 (521)
Q Consensus       229 L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~  278 (521)
                      |++++|. +..+|   .++.+++|++|++++|.++.+|.    .++.+++|++|++.
T Consensus        93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999986 77653   68999999999999999988876    57788888888754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.34  E-value=4.7e-12  Score=115.73  Aligned_cols=139  Identities=25%  Similarity=0.351  Sum_probs=112.4

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~  232 (521)
                      .+.++..++.+..+|..+.   ++|++|++++|. +..++...|+.+++|++|++++|.++.+|.. +..+.+|++|+++
T Consensus         9 ~~~v~c~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGIP---AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCccCCCCCCC---CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            4678888888999998764   689999999998 8888888779999999999999999988764 5799999999999


Q ss_pred             cCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hHHHHhhHhcccceEEEe
Q 041519          233 WCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYF  298 (521)
Q Consensus       233 ~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~  298 (521)
                      +|. +..+| . ++.+.+|++|++++|.++.+|.. ++.+++|++|++...      +..++.++ +|+.|++..
T Consensus        85 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~  157 (208)
T 2o6s_A           85 TNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHD  157 (208)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCS
T ss_pred             CCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-CccEEEecC
Confidence            986 77887 4 78999999999999999988775 677888888877543      12244555 555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.34  E-value=2.4e-12  Score=125.49  Aligned_cols=123  Identities=17%  Similarity=0.040  Sum_probs=53.2

Q ss_pred             CccEEEcccCcCCCCCchhHh-hCCCCCcEEEccCCCCCc-cC----ccccCCcccceeecccCCCCCccC--CccCCCC
Q 041519          177 ILSTLLLQHNKYLQRIPECFF-VHMHGLKVLNLCHTSIEV-LP----NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLA  248 (521)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~-lp----~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~  248 (521)
                      +|+.|++++|......|..++ +.+++|++|++++|.+.. .|    ..+..+++|++|++++|. +..+|  .++.+.+
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCC
Confidence            355555555442222333222 444555555555554442 11    122334455555555543 33332  3445555


Q ss_pred             CCEEEeeCCcCcc---cCc--cccCCCCCcccccccc-----h---H-HHHhhHhcccceEEEeccc
Q 041519          249 LQYLDLEGTWIEE---VPE--GMEMLENLSHLSLFMA-----A---E-EAARLSDRLDTFVGYFSTL  301 (521)
Q Consensus       249 L~~L~l~~~~l~~---lp~--~i~~l~~L~~L~~~~~-----~---~-~i~~L~~~L~~L~~~~~~~  301 (521)
                      |++|++++|.+..   ++.  .++.+++|++|++..+     +   . -++.++ +|++|+++.+.+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls~N~l  236 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLSHNSL  236 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECTTSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECCCCCC
Confidence            5555555554321   211  1234444444444332     1   1 135566 777776655444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.33  E-value=3.9e-12  Score=134.85  Aligned_cols=143  Identities=24%  Similarity=0.305  Sum_probs=79.2

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      +++++.|++.++.+..++. + ..+++|+.|++++|. +..+++  +..+++|++|+|++|.+..+| .++.+.+|++|+
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l-~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-G-GGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCChH-H-ccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence            3455666666666655542 2 255666666666665 555554  356666666666666655544 355666666666


Q ss_pred             cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecccc
Q 041519          231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~  302 (521)
                      +++|. +..+|.+..+.+|+.|++++|.+..+ ..++.+.+|++|++..+    ...+..++ +|+.|++..+.+.
T Consensus       116 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          116 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHIS  188 (605)
T ss_dssp             CTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC
T ss_pred             ecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCC-CCCEEECcCCCCC
Confidence            66654 55555555666666666666655555 34555566666655433    11155555 5666655544443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=7.6e-12  Score=112.81  Aligned_cols=121  Identities=26%  Similarity=0.363  Sum_probs=94.9

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchh-HhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLR  232 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~  232 (521)
                      ++++++++.+..+|..++   .++++|++++|. +..++.. +|+.+++|++|++++|.++.+ |..++.+.+|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            678888888888888765   378888888887 7777653 458888889999988888865 6778888888999988


Q ss_pred             cCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc
Q 041519          233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~  280 (521)
                      +|. +..++  .+..+.+|++|++++|.++.+ |..++.+++|++|++...
T Consensus        87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            876 67666  488888899999988888755 666777777777766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.32  E-value=1e-11  Score=130.35  Aligned_cols=98  Identities=20%  Similarity=0.414  Sum_probs=49.6

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      +++.|++.+|.+..+|..++   ++|++|++++|. +..+|    +.+++|++|++++|.++.+|. ++.  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNA-LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCC-Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            45555555555555554432   445555555554 44444    124555555555555555554 433  55555555


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCc
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPE  264 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~  264 (521)
                      +|. +..+|.  .+.+|++|++++|.++.+|.
T Consensus       129 ~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~  157 (571)
T 3cvr_A          129 NNQ-LTMLPE--LPALLEYINADNNQLTMLPE  157 (571)
T ss_dssp             SSC-CSCCCC--CCTTCCEEECCSSCCSCCCC
T ss_pred             CCc-CCCCCC--cCccccEEeCCCCccCcCCC
Confidence            543 444544  34555555555555554444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=1.2e-11  Score=111.45  Aligned_cols=120  Identities=28%  Similarity=0.470  Sum_probs=96.2

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeeccc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRW  233 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~  233 (521)
                      +.+++.++.+..+|..++   +++++|++++|. +..+|.. |..+++|++|++++|.++.++ ..+..+.+|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~-i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQ-FTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCCEEECCSSC-CCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCCC---CCCCEEECCCCc-CchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            577888888888887765   578899999888 7788855 488999999999999888765 4678899999999998


Q ss_pred             CCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519          234 CGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA  280 (521)
Q Consensus       234 ~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~  280 (521)
                      |. +..+|  .+..+.+|++|++++|.++.+|.+ +..+.+|++|++...
T Consensus        88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            76 77776  588899999999999988888775 666777777766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=6.7e-13  Score=132.38  Aligned_cols=129  Identities=16%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             ccCCccEEEeecCCCCCCCC----CcCCCCC-CccEEEcccCcCCCCCchhHhhCC-----CCCcEEEccCCCCCccC-c
Q 041519          150 WEENLERVSLMENDFEEIPS----NMSPHCE-ILSTLLLQHNKYLQRIPECFFVHM-----HGLKVLNLCHTSIEVLP-N  218 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~l~~lp-~  218 (521)
                      ..+++++|++++|.+...+.    ..+..++ +|++|++++|. +.......+..+     ++|++|++++|.+...+ .
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            34568888888888887765    3344666 78888888887 555543333443     88888888888877443 3


Q ss_pred             c----ccCC-cccceeecccCCCCCccC--Cc----cC-CCCCCEEEeeCCcCc-----ccCccccCCC-CCcccccccc
Q 041519          219 S----VSDL-TNLRSLLLRWCGILKRVP--SL----AK-LLALQYLDLEGTWIE-----EVPEGMEMLE-NLSHLSLFMA  280 (521)
Q Consensus       219 ~----i~~L-~~L~~L~l~~~~~l~~lp--~~----~~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~~~~~  280 (521)
                      .    +..+ .+|++|++++|. +...+  .+    .. ..+|++|++++|.+.     .++..+..+. +|++|++..+
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            2    3344 788888888876 66554  22    23 358888888888776     3344444444 6666665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.31  E-value=4.9e-13  Score=142.45  Aligned_cols=209  Identities=16%  Similarity=0.116  Sum_probs=126.8

Q ss_pred             cCCccEEEeecCCC----CCCCCCc-----------CCCCCCccEEEcccCcCCCC-CchhHhhCCCCCcEEEccCC-CC
Q 041519          151 EENLERVSLMENDF----EEIPSNM-----------SPHCEILSTLLLQHNKYLQR-IPECFFVHMHGLKVLNLCHT-SI  213 (521)
Q Consensus       151 ~~~l~~L~l~~~~~----~~l~~~~-----------~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~~-~l  213 (521)
                      .++++.|++.++..    .-.|..+           ...+++|+.|++++|. +.. .+..+...+++|++|++++| .+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            45789999988652    1122222           2357899999999987 443 33444347899999999998 45


Q ss_pred             Cc--cCccccCCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCc--Cc--ccCccccCCCCCcccccccc-
Q 041519          214 EV--LPNSVSDLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTW--IE--EVPEGMEMLENLSHLSLFMA-  280 (521)
Q Consensus       214 ~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~~~~~-  280 (521)
                      ..  ++..+..+++|++|++++|. +..     ++ ....+.+|++|++++|.  +.  .++.-+..+++|++|++..+ 
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence            53  55555589999999999986 433     34 34477899999999986  22  22332455789999988765 


Q ss_pred             -----hHHHHhhHhcccceEEEecc-------ccchhhhhhccCCCCCCcceeeeecCCCCCCcc--ccceeeeeeeeee
Q 041519          281 -----AEEAARLSDRLDTFVGYFST-------LNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLE--VDKSVRLFACKIC  346 (521)
Q Consensus       281 -----~~~i~~L~~~L~~L~~~~~~-------~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~--~~~~~~L~~L~i~  346 (521)
                           +..++.++ +|+.|++....       .......   ...+++|+.+..... .......  .....+|+.|.++
T Consensus       223 ~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~---l~~~~~L~~Ls~~~~-~~~~~l~~~~~~~~~L~~L~L~  297 (594)
T 2p1m_B          223 PLEKLATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVA---LSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTLNLS  297 (594)
T ss_dssp             CHHHHHHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHH---HHTCTTCCEEECCBT-CCGGGGGGGHHHHTTCCEEECT
T ss_pred             cHHHHHHHHhcCC-cceEcccccccCccchhhHHHHHHH---HhcCCCcccccCCcc-cchhhHHHHHHhhCCCCEEEcc
Confidence                 45677888 89998753221       1112222   233444544421110 0001111  1134567777776


Q ss_pred             cCccc-------ccCccccceEEEecc
Q 041519          347 ETEET-------IVLPEDVQYLEMFGV  366 (521)
Q Consensus       347 ~~~~~-------~~~p~~L~~L~l~~~  366 (521)
                      ++...       ....++|+.|.+.+|
T Consensus       298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          298 YATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            66321       112457788887776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.31  E-value=4.5e-12  Score=134.35  Aligned_cols=156  Identities=22%  Similarity=0.286  Sum_probs=128.6

Q ss_pred             cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519          137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL  216 (521)
Q Consensus       137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l  216 (521)
                      .+..+..++ ....+++|+.|++++|.+..+++  +..+++|+.|++++|. +..++.  +..+++|+.|+|++|.+..+
T Consensus        51 ~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           51 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLSS--LKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             TTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCTT--STTCTTCCEEECTTSCCCCC
T ss_pred             cCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCChh--hccCCCCCEEEecCCCCCCC
Confidence            444555555 35667899999999999998876  4489999999999998 777764  58999999999999999887


Q ss_pred             CccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhccc
Q 041519          217 PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLD  292 (521)
Q Consensus       217 p~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~  292 (521)
                      + .++.+++|+.|++++|. +..++.++.+.+|+.|++++|.+..++. +..+.+|++|++..+    ...+..++ +|+
T Consensus       125 ~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~-~L~  200 (605)
T 1m9s_A          125 N-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK-NLD  200 (605)
T ss_dssp             G-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT-TCS
T ss_pred             c-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCC-CCC
Confidence            5 48899999999999986 7777888999999999999999988766 889999999988765    34577888 888


Q ss_pred             ceEEEecccc
Q 041519          293 TFVGYFSTLN  302 (521)
Q Consensus       293 ~L~~~~~~~~  302 (521)
                      .|++..+.+.
T Consensus       201 ~L~L~~N~l~  210 (605)
T 1m9s_A          201 VLELFSQECL  210 (605)
T ss_dssp             EEECCSEEEE
T ss_pred             EEEccCCcCc
Confidence            8887665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.29  E-value=1.8e-11  Score=107.66  Aligned_cols=131  Identities=24%  Similarity=0.243  Sum_probs=109.7

Q ss_pred             cEEEecCcccc--cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEcc
Q 041519          132 LFMVTAGLRLL--KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC  209 (521)
Q Consensus       132 ~~~~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~  209 (521)
                      ..+...+..+.  .+|.....++++++|++.+|.+..+ .. +..+++|++|++++|. +...++.++..+++|++|+++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECB
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEecc
Confidence            35555666676  7887777889999999999999988 44 4589999999999998 666344455789999999999


Q ss_pred             CCCCCccC--ccccCCcccceeecccCCCCCccCC-----ccCCCCCCEEEeeCCcCcccCccc
Q 041519          210 HTSIEVLP--NSVSDLTNLRSLLLRWCGILKRVPS-----LAKLLALQYLDLEGTWIEEVPEGM  266 (521)
Q Consensus       210 ~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~~~l~~lp~~i  266 (521)
                      +|.++.+|  ..++.+++|++|++++|. +..+|.     +..+++|++|++++|.+.++|.+.
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  166 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD  166 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence            99999876  788999999999999986 666663     788999999999999998888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=4.3e-13  Score=134.99  Aligned_cols=90  Identities=18%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             CCCcccccCCccEEEeecCCCCCC-----CCCcCCCCCCccEEEcccCcCCC----CCchhH------hhCCCCCcEEEc
Q 041519          144 FPGEQEWEENLERVSLMENDFEEI-----PSNMSPHCEILSTLLLQHNKYLQ----RIPECF------FVHMHGLKVLNL  208 (521)
Q Consensus       144 ~p~~~~~~~~l~~L~l~~~~~~~l-----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~L  208 (521)
                      ++......+++++|++++|.+...     +.. +..+++|++|++++|. +.    .+|..+      +..+++|++|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHH-HHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            333344445566666666655431     111 2245566666666543 22    223222      245566666666


Q ss_pred             cCCCCCc-----cCccccCCcccceeecccCC
Q 041519          209 CHTSIEV-----LPNSVSDLTNLRSLLLRWCG  235 (521)
Q Consensus       209 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~  235 (521)
                      ++|.+..     +|..+..+++|++|++++|.
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            6665553     45555555666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=3.8e-11  Score=106.65  Aligned_cols=120  Identities=28%  Similarity=0.467  Sum_probs=67.4

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeeccc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLRW  233 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~  233 (521)
                      +.+++.++.+..+|..+.   ++|+.|++++|. +..++...|+.+++|++|++++|.++.+|.. ++.+.+|++|++++
T Consensus        10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCCCCCC---CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            455555555555554433   456666666655 5555555445566666666666666555433 35566666666666


Q ss_pred             CCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519          234 CGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM  279 (521)
Q Consensus       234 ~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~  279 (521)
                      |. +..+| . +..+.+|++|++++|.++.+|.. +..+++|++|++..
T Consensus        86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            54 55554 2 45566666666666665555554 24555666655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.28  E-value=2.4e-11  Score=109.54  Aligned_cols=123  Identities=21%  Similarity=0.314  Sum_probs=106.0

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+++++|++.+|.++.+|..+ ..+++|++|++++|. +..++...|..+++|++|++++|.
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence            4456677788888643  468999999999999999554 589999999999998 888888777999999999999999


Q ss_pred             CCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCc
Q 041519          213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       213 l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~  260 (521)
                      ++.+| ..+..+.+|++|++++|. +..+|  .+..+.+|++|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            99776 468899999999999986 88888  4889999999999998654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=9.9e-12  Score=123.79  Aligned_cols=146  Identities=27%  Similarity=0.330  Sum_probs=120.8

Q ss_pred             EEEecCcccccCCCccc--ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC
Q 041519          133 FMVTAGLRLLKFPGEQE--WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH  210 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~--~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~  210 (521)
                      .+..+++.+..++....  .++++++|++++|.+..++...+..+++|+.|++++|. +..++...|..+++|++|+|++
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~  121 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYN  121 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCC
Confidence            44556666666665433  67899999999999999998877799999999999998 8888888789999999999999


Q ss_pred             CCCCcc-CccccCCcccceeecccCCCCCccC-Cc----cCCCCCCEEEeeCCcCcccCc-cccCCCC--Ccccccccc
Q 041519          211 TSIEVL-PNSVSDLTNLRSLLLRWCGILKRVP-SL----AKLLALQYLDLEGTWIEEVPE-GMEMLEN--LSHLSLFMA  280 (521)
Q Consensus       211 ~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~----~~l~~L~~L~l~~~~l~~lp~-~i~~l~~--L~~L~~~~~  280 (521)
                      |.+..+ |..+..+.+|++|++++|. +..+| .+    ..+.+|++|++++|.++.+|. .+..+.+  ++.|++...
T Consensus       122 N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          122 NHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            999966 6788999999999999986 88898 53    679999999999999999885 3666665  366776544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=3.1e-11  Score=107.17  Aligned_cols=124  Identities=26%  Similarity=0.379  Sum_probs=106.5

Q ss_pred             EEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519          134 MVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI  213 (521)
Q Consensus       134 ~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l  213 (521)
                      +...+..+..+|..  ..+++++|++.+|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|.+
T Consensus        12 l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           12 IRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             EECCSSCCSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc
Confidence            44556667777753  34699999999999999998887789999999999998 8888888779999999999999999


Q ss_pred             CccCcc-ccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcc
Q 041519          214 EVLPNS-VSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       214 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~  261 (521)
                      +.+|.. ++.+.+|++|++++|. +..+| . +..+.+|++|++++|.+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            988764 6899999999999985 88888 4 6889999999999997653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.27  E-value=6.3e-13  Score=133.79  Aligned_cols=126  Identities=12%  Similarity=0.094  Sum_probs=77.5

Q ss_pred             CCCCccEEEcccCcCCCCCch-h---HhhCCCCCcEEEccCCCCC----ccCccc-------cCCcccceeecccCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPE-C---FFVHMHGLKVLNLCHTSIE----VLPNSV-------SDLTNLRSLLLRWCGILK  238 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~-~---~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~L~~L~~L~l~~~~~l~  238 (521)
                      .+++|++|++++|. +..... .   .+..+++|++|++++|.+.    .+|..+       ..+++|++|++++|. +.
T Consensus        30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG  107 (386)
T ss_dssp             HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred             cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence            56777777777776 443221 1   1356777778877776443    334333       567777788877765 44


Q ss_pred             c-----cC-CccCCCCCCEEEeeCCcCcc-----cCccccCC---------CCCcccccccc-------h---HHHHhhH
Q 041519          239 R-----VP-SLAKLLALQYLDLEGTWIEE-----VPEGMEML---------ENLSHLSLFMA-------A---EEAARLS  288 (521)
Q Consensus       239 ~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l---------~~L~~L~~~~~-------~---~~i~~L~  288 (521)
                      .     +| .+..+++|++|++++|.+..     ++..+..+         ++|++|++..+       +   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            3     55 56777777888887776652     23333333         67777776543       1   3455667


Q ss_pred             hcccceEEEecccc
Q 041519          289 DRLDTFVGYFSTLN  302 (521)
Q Consensus       289 ~~L~~L~~~~~~~~  302 (521)
                       +|++|++..+.+.
T Consensus       188 -~L~~L~L~~n~l~  200 (386)
T 2ca6_A          188 -LLHTVKMVQNGIR  200 (386)
T ss_dssp             -TCCEEECCSSCCC
T ss_pred             -CcCEEECcCCCCC
Confidence             7777777666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=7.5e-12  Score=111.13  Aligned_cols=125  Identities=16%  Similarity=0.202  Sum_probs=96.3

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccc-cCCccccee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV-SDLTNLRSL  229 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L  229 (521)
                      ..++++|++++|.+..++. +....++|++|++++|. +..++ . ++.+++|++|++++|.++.+|..+ +.+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            4578899999998888854 44334489999999887 66663 3 588889999999999888887655 788899999


Q ss_pred             ecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCcc----ccCCCCCcccccccc
Q 041519          230 LLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPEG----MEMLENLSHLSLFMA  280 (521)
Q Consensus       230 ~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~~~~~  280 (521)
                      ++++|. +..+|   .++.+++|++|++++|.+..+|..    ++.+++|+.|++..+
T Consensus        94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            999875 77776   377888999999999988877764    666666666665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.26  E-value=3.1e-11  Score=114.58  Aligned_cols=138  Identities=22%  Similarity=0.254  Sum_probs=119.0

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..++ ....++++++|++++|.+..++.  +..+++|+.|++++|. +..++..  .. ++|++|++++|.
T Consensus        45 ~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~--~~-~~L~~L~L~~N~  117 (263)
T 1xeu_A           45 NFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNGI--PS-ACLSRLFLDNNE  117 (263)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTTC--CC-SSCCEEECCSSC
T ss_pred             EEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCcc--cc-CcccEEEccCCc
Confidence            4555666777777 56677899999999999999887  4589999999999998 8888763  34 999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~  280 (521)
                      ++.++ .++.+.+|++|++++|. +..+|.++.+.+|++|++++|.+..+ ..+..+++|++|++...
T Consensus       118 l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          118 LRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred             cCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence            99876 48999999999999986 88888889999999999999999888 56888999999988764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.26  E-value=3.7e-11  Score=108.25  Aligned_cols=124  Identities=23%  Similarity=0.262  Sum_probs=104.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCC-cCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSN-MSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+...+..+..+|...  ..++++|++.+|.+..++.. .+..+++|++|++++|. +..+++..|+.+++|++|++++|
T Consensus        12 ~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC
Confidence            3455667778888744  34899999999999999875 45689999999999998 77776555699999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCc
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~  260 (521)
                      .++.++. .++.+++|++|++++|. +..+ | .+..+.+|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9997754 58899999999999987 6655 6 7999999999999999765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.23  E-value=2e-11  Score=128.49  Aligned_cols=107  Identities=22%  Similarity=0.338  Sum_probs=67.7

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      .++.|++++|.++.+|. + ..+++|++|++++|. +..+|..+ +.+++|++|+|++|.++.+| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSC-CCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCcC-c-cccccCcEeecCccc-ccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            45666666666666664 3 366666666666666 55666554 66666666666666666666 56666666666666


Q ss_pred             cCCCCCcc--C-CccCCCCCCEEEeeCCcCcccCcc
Q 041519          233 WCGILKRV--P-SLAKLLALQYLDLEGTWIEEVPEG  265 (521)
Q Consensus       233 ~~~~l~~l--p-~~~~l~~L~~L~l~~~~l~~lp~~  265 (521)
                      +|. +..+  | .++.+++|++|++++|.++.+|..
T Consensus       517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            654 5554  5 566666666666666666655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.23  E-value=4.1e-12  Score=126.65  Aligned_cols=122  Identities=19%  Similarity=0.147  Sum_probs=85.5

Q ss_pred             EEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCch----hHhhCCC-CCcEEEccCCCCCcc-CccccCC-----cc
Q 041519          157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPE----CFFVHMH-GLKVLNLCHTSIEVL-PNSVSDL-----TN  225 (521)
Q Consensus       157 L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~L-----~~  225 (521)
                      ..+..+.+....+.+....++|++|++++|. +...+.    ..+..++ +|++|++++|.+... +..+..+     .+
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4556666665444444455669999999998 777765    5567888 899999999998854 5556654     89


Q ss_pred             cceeecccCCCCCccC--C----ccCC-CCCCEEEeeCCcCcccCcc-----ccC-CCCCcccccccc
Q 041519          226 LRSLLLRWCGILKRVP--S----LAKL-LALQYLDLEGTWIEEVPEG-----MEM-LENLSHLSLFMA  280 (521)
Q Consensus       226 L~~L~l~~~~~l~~lp--~----~~~l-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~~~~~  280 (521)
                      |++|++++|. +...+  .    +..+ .+|++|++++|.++..+..     +.. .++|++|++..+
T Consensus        82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  148 (362)
T 3goz_A           82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN  148 (362)
T ss_dssp             CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred             ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence            9999999986 66554  3    3444 8999999999988765542     222 246666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=1.7e-11  Score=133.08  Aligned_cols=106  Identities=24%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             CCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCC
Q 041519          172 SPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQ  250 (521)
Q Consensus       172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~  250 (521)
                      +..+++|++|++++|. +..+|..+ ..+++|++|+|++|.++.+|.+++.|.+|++|+|++|. +..+| .++.|.+|+
T Consensus       220 ~~~l~~L~~L~Ls~n~-l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQ-IFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSC-CSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCC-CCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence            3456666666666666 55666555 35666666666666666666666666666666666654 55666 566666666


Q ss_pred             EEEeeCCcCcccCccccCCCCCcccccccc
Q 041519          251 YLDLEGTWIEEVPEGMEMLENLSHLSLFMA  280 (521)
Q Consensus       251 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~  280 (521)
                      +|++++|.++.+|.+++.|++|++|++...
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence            666666666666666666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.20  E-value=8.8e-12  Score=121.44  Aligned_cols=195  Identities=14%  Similarity=0.029  Sum_probs=135.8

Q ss_pred             HHHHHHHhccCCcEEEecCcccc-cCCCcc--cccCCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCCC
Q 041519          120 RDMALRITSKSPLFMVTAGLRLL-KFPGEQ--EWEENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQRI  192 (521)
Q Consensus       120 ~dl~~~i~~~~~~~~~~~~~~~~-~~p~~~--~~~~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~~  192 (521)
                      ..+........-..+...++.+. ..|...  ...+++++|++++|.+......    .+..+++|++|++++|. +..+
T Consensus        82 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~  160 (310)
T 4glp_A           82 VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAF  160 (310)
T ss_dssp             HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCC
T ss_pred             HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchh
Confidence            33333333333444444555554 344444  6678999999999998863321    11258899999999998 7777


Q ss_pred             chhHhhCCCCCcEEEccCCCCCc---cC--ccccCCcccceeecccCCCCCccC-C----ccCCCCCCEEEeeCCcCccc
Q 041519          193 PECFFVHMHGLKVLNLCHTSIEV---LP--NSVSDLTNLRSLLLRWCGILKRVP-S----LAKLLALQYLDLEGTWIEEV  262 (521)
Q Consensus       193 ~~~~~~~l~~L~~L~L~~~~l~~---lp--~~i~~L~~L~~L~l~~~~~l~~lp-~----~~~l~~L~~L~l~~~~l~~l  262 (521)
                      ++..|+.+++|++|++++|.+..   ++  ..++.+++|++|++++|. +..+| .    ++.+.+|++|++++|.+..+
T Consensus       161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            76666899999999999998653   33  334688999999999986 77665 2    46889999999999988876


Q ss_pred             -CccccCC---CCCcccccccc-----hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeee
Q 041519          263 -PEGMEML---ENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL  323 (521)
Q Consensus       263 -p~~i~~l---~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~  323 (521)
                       |..++.+   ++|++|++...     +..+.  + +|+.|++..+.+..+..    ...+.+|+.+.+.
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~-~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~  302 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A-KLRVLDLSSNRLNRAPQ----PDELPEVDNLTLD  302 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S-CCSCEECCSCCCCSCCC----TTSCCCCSCEECS
T ss_pred             chhhHHhccCcCcCCEEECCCCCCCchhhhhc--C-CCCEEECCCCcCCCCch----hhhCCCccEEECc
Confidence             7777777   58888887654     33332  6 89999988777665422    2345666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=4.4e-11  Score=105.85  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=92.8

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~  232 (521)
                      .+.++++++.+..+|..+.   ++|++|++++|. +..+++..|+++++|++|+|++|.++.+|.. +..+.+|++|+++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            4688999999999998765   789999999998 8888766679999999999999999988876 4789999999999


Q ss_pred             cCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCccc
Q 041519          233 WCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEGM  266 (521)
Q Consensus       233 ~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~i  266 (521)
                      +|. +..+| . +..+.+|++|++++|.+...+..+
T Consensus        90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           90 DNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             SSC-CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             CCc-cceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence            986 88888 4 889999999999999877665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=1.5e-11  Score=133.52  Aligned_cols=119  Identities=21%  Similarity=0.327  Sum_probs=103.7

Q ss_pred             CCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCC
Q 041519          144 FPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDL  223 (521)
Q Consensus       144 ~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L  223 (521)
                      .+.....+..++.|++++|.+..+|..++ .+++|++|++++|. +..+|..+ +.+++|++|+|++|.++.+|.+++.|
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNS-LTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSC-CSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCc-CcccChhh-hCCCCCCEEeCcCCcCCccChhhcCC
Confidence            34455667899999999999999999988 89999999999998 77999876 99999999999999999999999999


Q ss_pred             cccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcc-cCccc
Q 041519          224 TNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEE-VPEGM  266 (521)
Q Consensus       224 ~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~-lp~~i  266 (521)
                      .+|++|+|++|. +..+| .++++.+|++|++++|.+.. +|..+
T Consensus       293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            999999999985 88999 89999999999999998874 44444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.18  E-value=3.1e-11  Score=107.09  Aligned_cols=125  Identities=18%  Similarity=0.248  Sum_probs=106.5

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...++.+..++......+++++|++++|.+..+ .. +..+++|++|++++|. +..+|+.+|+.+++|++|++++|.
T Consensus        23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~   99 (176)
T 1a9n_A           23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS   99 (176)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC
T ss_pred             EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc
Confidence            44556667777766555556999999999999988 34 4589999999999998 888888877999999999999999


Q ss_pred             CCccCc--cccCCcccceeecccCCCCCccC-C----ccCCCCCCEEEeeCCcCcc
Q 041519          213 IEVLPN--SVSDLTNLRSLLLRWCGILKRVP-S----LAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       213 l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp-~----~~~l~~L~~L~l~~~~l~~  261 (521)
                      +..+|.  .++.+++|++|++++|. +..+| .    ++.+++|++|++++|...+
T Consensus       100 i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          100 LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            998887  78999999999999987 77888 4    8899999999999986554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.17  E-value=1.3e-10  Score=121.88  Aligned_cols=109  Identities=21%  Similarity=0.291  Sum_probs=50.6

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      +++++|++++|.+..+| .   .+++|++|++++|. +..+|. + ..  +|++|++++|.++.+|.   .+.+|++|++
T Consensus        80 ~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~-l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALISLP-E---LPASLEYLDACDNR-LSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSC-CSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCC-CCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence            34555555555555544 1   23455555555554 444444 2 22  45555555555444444   3444555555


Q ss_pred             ccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccc
Q 041519          232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLF  278 (521)
Q Consensus       232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~  278 (521)
                      ++|. +..+|.  .+.+|++|++++|.++.+|. +.  ++|++|++.
T Consensus       148 s~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          148 DNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVS  188 (571)
T ss_dssp             CSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECC
T ss_pred             CCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECc
Confidence            5443 444443  23444444444444444444 33  444444443

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.16  E-value=3.6e-11  Score=127.93  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCC-----CchhhHHHHHHHHhHhcCCchhHHH
Q 041519            9 LNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-----NDVDTKVFGRLEFSYHRLKDEKLQQ   83 (521)
Q Consensus         9 ~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~lSY~~L~~~~lk~   83 (521)
                      ...+.+++|+++|+|+|||++.+|+.|+.+  ...|+.+++.+.......     ......+..++..||+.|| .+.|.
T Consensus       305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~  381 (591)
T 1z6t_A          305 DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKD  381 (591)
T ss_dssp             GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHH
T ss_pred             cccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHH
Confidence            345678999999999999999999999874  347999999886543221     1123589999999999999 89999


Q ss_pred             HHHHHHH----------------------HhHHHHHHHHccccccccCC--CccccchHHHHHHHHHh
Q 041519           84 CFLYCAL----------------------GHTILNRLVNCCLLESAKDG--SCVKMHDLIRDMALRIT  127 (521)
Q Consensus        84 cfl~~s~----------------------g~~~~~~L~~~~l~~~~~~~--~~~~mhdli~dl~~~i~  127 (521)
                      ||++||+                      ++.++++|+++|||+....+  ..|+||+++++++....
T Consensus       382 ~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          382 YYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             HHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            9999998                      45789999999999865543  47999999999998773

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.15  E-value=2.8e-11  Score=131.07  Aligned_cols=90  Identities=16%  Similarity=0.219  Sum_probs=77.4

Q ss_pred             cCCchhHHHHHHHhcCCC-CChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhH-HHHHHHHHH--------
Q 041519           21 CGCLPLAIVTVAASMSGE-EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKL-QQCFLYCAL--------   90 (521)
Q Consensus        21 c~GlPLAi~~lg~~L~~k-~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~l-k~cfl~~s~--------   90 (521)
                      |+|+||||+++|+.|+.+ .+.++|+.+             ..+.+..+|++||+.|| .+. |+||+|||+        
T Consensus       323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~  388 (1221)
T 1vt4_I          323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIP  388 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEE
T ss_pred             hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999986 367889753             12689999999999999 788 999999999        


Q ss_pred             ---------------HhHHHHHHHHccccccccCCCccccchHHHHHHH
Q 041519           91 ---------------GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMAL  124 (521)
Q Consensus        91 ---------------g~~~~~~L~~~~l~~~~~~~~~~~mhdli~dl~~  124 (521)
                                     ++.+|++|+++|||+.......|+|||++++++.
T Consensus       389 ~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence                           4578999999999998643468999999999663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=1.9e-10  Score=101.36  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=88.9

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~  232 (521)
                      .+.++++++.++.+|..+.   ++|++|++++|. +..+++..|+.+++|++|++++|.++.+|.. +..+.+|++|+++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP---TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccCC---CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            5788999999999998764   789999999998 8888766678999999999999999988765 5789999999999


Q ss_pred             cCCCCCccC--CccCCCCCCEEEeeCCcCcccC
Q 041519          233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVP  263 (521)
Q Consensus       233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp  263 (521)
                      +|. +..+|  .+..+.+|++|++++|.+.-.+
T Consensus        87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            986 78887  4889999999999999766443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=1.2e-10  Score=122.56  Aligned_cols=98  Identities=23%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             ccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCC
Q 041519          178 LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT  257 (521)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~  257 (521)
                      |++|++++|. +..+|.  ++.+++|++|++++|.++.+|..++.+.+|++|++++|. +..+|.++.+.+|++|++++|
T Consensus       443 L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred             ceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence            5555666555 555554  355666666666666655566556666666666666553 555555555666666666666


Q ss_pred             cCccc--CccccCCCCCccccccc
Q 041519          258 WIEEV--PEGMEMLENLSHLSLFM  279 (521)
Q Consensus       258 ~l~~l--p~~i~~l~~L~~L~~~~  279 (521)
                      .++.+  |..++.+++|++|++..
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecC
Confidence            55555  55555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.13  E-value=1.7e-10  Score=99.18  Aligned_cols=119  Identities=28%  Similarity=0.309  Sum_probs=99.1

Q ss_pred             EEEecCcccc--cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCC-CchhHhhCCCCCcEEEcc
Q 041519          133 FMVTAGLRLL--KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR-IPECFFVHMHGLKVLNLC  209 (521)
Q Consensus       133 ~~~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~  209 (521)
                      .+...+..+.  .+|.....++++++|++++|.+..+ .. +..+++|++|++++|. +.. +|. .++.+++|++|+++
T Consensus        21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~ls   96 (149)
T 2je0_A           21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNR-VSGGLEV-LAEKCPNLTHLNLS   96 (149)
T ss_dssp             EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSC-CCSCTHH-HHHHCTTCCEEECT
T ss_pred             EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCc-ccchHHH-HhhhCCCCCEEECC
Confidence            4455666666  7787777889999999999999988 33 4589999999999998 666 555 45889999999999


Q ss_pred             CCCCCccC--ccccCCcccceeecccCCCCCccCC-----ccCCCCCCEEEeeC
Q 041519          210 HTSIEVLP--NSVSDLTNLRSLLLRWCGILKRVPS-----LAKLLALQYLDLEG  256 (521)
Q Consensus       210 ~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~  256 (521)
                      +|.++.+|  ..++.+++|++|++++|. +..+|.     ++.+++|++|++++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            99999765  789999999999999986 777764     78899999998763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.05  E-value=3.1e-12  Score=115.98  Aligned_cols=122  Identities=22%  Similarity=0.317  Sum_probs=72.8

Q ss_pred             ccEEEeecC--CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          154 LERVSLMEN--DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       154 l~~L~l~~~--~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      ++...+.+.  .++.+|..+. .+++|++|++++|. +..+| . +..+++|++|++++|.+..+|..++.+++|++|++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~-l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNN-IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEE-ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred             hheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCC-Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence            344444333  3334443333 56667777776665 55565 3 36666777777777666666665666666777777


Q ss_pred             ccCCCCCccCCccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccc
Q 041519          232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA  280 (521)
Q Consensus       232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~  280 (521)
                      ++|. +..+|.++.+.+|++|++++|.+..+|.  .+..+++|++|++...
T Consensus       101 ~~N~-l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          101 SYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             cCCc-CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            7664 5556656666667777777666665543  4556666666665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.04  E-value=1.2e-09  Score=96.51  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=91.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+++++|++++|.+..+++..+..+++|++|++++|. +..+|..+|..+++|++|+|++|.
T Consensus        16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence            4556677788888754  3799999999999999988777799999999999998 899999888999999999999999


Q ss_pred             CCccCcc-ccCCcccceeecccCCCCCccC
Q 041519          213 IEVLPNS-VSDLTNLRSLLLRWCGILKRVP  241 (521)
Q Consensus       213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp  241 (521)
                      ++.+|.. +..+.+|++|++++|. +...+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNP-WDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence            9988875 8899999999999986 55444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=4.1e-12  Score=115.16  Aligned_cols=116  Identities=23%  Similarity=0.228  Sum_probs=98.9

Q ss_pred             cccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccc
Q 041519          141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV  220 (521)
Q Consensus       141 ~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i  220 (521)
                      +..+|.....++++++|++++|.+..+| .+ ..+++|++|++++|. +..+|..+ ..+++|++|++++|.++.+| .+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~-l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~  111 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNL-IKKIENLD-AVADTLEELWISYNQIASLS-GI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEE-ECSCSSHH-HHHHHCSEEEEEEEECCCHH-HH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCC-cccccchh-hcCCcCCEEECcCCcCCcCC-cc
Confidence            3444446677889999999999999988 44 489999999999998 78888754 77899999999999999887 58


Q ss_pred             cCCcccceeecccCCCCCccC---CccCCCCCCEEEeeCCcCccc
Q 041519          221 SDLTNLRSLLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEV  262 (521)
Q Consensus       221 ~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~l  262 (521)
                      +.+++|++|++++|. +..+|   .+..+.+|++|++++|.+...
T Consensus       112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            899999999999986 77665   488999999999999977644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.99  E-value=2.2e-09  Score=94.48  Aligned_cols=100  Identities=19%  Similarity=0.286  Sum_probs=88.1

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+|...  .+++++|++++|.+..+++..+..+++|++|++++|+ +..+|...|..+++|++|+|++|.
T Consensus        13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc
Confidence            3455677788888654  4789999999999999988777799999999999998 889998888999999999999999


Q ss_pred             CCccCc-cccCCcccceeecccCC
Q 041519          213 IEVLPN-SVSDLTNLRSLLLRWCG  235 (521)
Q Consensus       213 l~~lp~-~i~~L~~L~~L~l~~~~  235 (521)
                      ++.+|. .+..+.+|++|++++|.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCC
Confidence            998876 48899999999999986

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.76  E-value=2.6e-08  Score=98.28  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=81.3

Q ss_pred             cEEEeecC-CCCCCCCCcCCCCCCccEEEccc-CcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeec
Q 041519          155 ERVSLMEN-DFEEIPSNMSPHCEILSTLLLQH-NKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLL  231 (521)
Q Consensus       155 ~~L~l~~~-~~~~l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l  231 (521)
                      ..++..++ .+..+|. + ..+++|+.|++++ |. +..++...|+++++|++|+|++|.++.+| ..|++|.+|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-L-PGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT-S-CSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC-C-CCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            34577777 7888888 4 4788899999986 76 88888776789999999999999988665 46788999999999


Q ss_pred             ccCCCCCccC-CccCCCCCCEEEeeCCcCcc
Q 041519          232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~  261 (521)
                      ++|. +..+| .+....+|+.|++.+|.+.-
T Consensus        88 ~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNA-LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSSC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCc-cceeCHHHcccCCceEEEeeCCCccC
Confidence            9976 78887 54444449999999886653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.65  E-value=6e-08  Score=95.66  Aligned_cols=99  Identities=17%  Similarity=0.096  Sum_probs=86.5

Q ss_pred             EecCc-ccccCCCcccccCCccEEEeec-CCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          135 VTAGL-RLLKFPGEQEWEENLERVSLME-NDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       135 ~~~~~-~~~~~p~~~~~~~~l~~L~l~~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      ...+. .+..+|. .....+++.|++++ |.+..++...+..+++|+.|+|++|. +..+++..|+++++|++|+|++|.
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence            44555 7888998 77788999999996 99999998877799999999999998 888888778999999999999999


Q ss_pred             CCccCccccCCcccceeecccCC
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCG  235 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~  235 (521)
                      ++.+|..+.....|++|++++|.
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             cceeCHHHcccCCceEEEeeCCC
Confidence            99998766654459999999986

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=6.9e-08  Score=94.54  Aligned_cols=64  Identities=16%  Similarity=0.283  Sum_probs=43.1

Q ss_pred             cCCccEEEeecCCCC--------------------CCCCCcCCC--------CCCccEEEcccCcCCCCCchhHhhCCCC
Q 041519          151 EENLERVSLMENDFE--------------------EIPSNMSPH--------CEILSTLLLQHNKYLQRIPECFFVHMHG  202 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~--------------------~l~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~l~~  202 (521)
                      +++++.|++++|.+.                    .+|...|..        |++|+.+.+.. . +..+++..|.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcc
Confidence            346666776666665                    455566666        77777777776 3 77777777777777


Q ss_pred             CcEEEccCCCCCcc
Q 041519          203 LKVLNLCHTSIEVL  216 (521)
Q Consensus       203 L~~L~L~~~~l~~l  216 (521)
                      |+.+++++|.+..+
T Consensus       126 L~~l~l~~n~i~~i  139 (329)
T 3sb4_A          126 LKICQIRKKTAPNL  139 (329)
T ss_dssp             CCEEEBCCSSCCEE
T ss_pred             cceEEcCCCCcccc
Confidence            88777777765544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.50  E-value=3.8e-06  Score=84.32  Aligned_cols=119  Identities=15%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceee
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLL  230 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~  230 (521)
                      ..++.+.+.. .++.++...|..+ +|+.+.+..+  +..++...|.++ +|+.+.+.. .++.++ .++..+.+|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4555555543 4566666666554 5777776554  666666656663 577777765 455554 4556777777777


Q ss_pred             cccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519          231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF  278 (521)
Q Consensus       231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~  278 (521)
                      +..+. +..+| ......+|+.+.+..+ ++.++.. +.++.+|+.+.+.
T Consensus       187 l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          187 LSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             cCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            77653 67776 4333567777777643 5555443 5556666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=1.4e-06  Score=85.22  Aligned_cols=91  Identities=16%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             CCCCcEEEccCCCCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCC-EEEeeCCcCcccCc-cccCCCCCcc
Q 041519          200 MHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ-YLDLEGTWIEEVPE-GMEMLENLSH  274 (521)
Q Consensus       200 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~-~L~l~~~~l~~lp~-~i~~l~~L~~  274 (521)
                      +++|+.+++++|.++.+|. +|..+.+|+.+++.++  +..++  .|..+.+|+ .+++.+ +++.++. .+..+.+|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            7789999999888888875 5678889999999875  78887  588899998 999888 6777764 4778888888


Q ss_pred             cccccc------hHHHHhhHhcccce
Q 041519          275 LSLFMA------AEEAARLSDRLDTF  294 (521)
Q Consensus       275 L~~~~~------~~~i~~L~~~L~~L  294 (521)
                      +.+...      ...+..++ +|+.+
T Consensus       302 l~l~~n~i~~I~~~aF~~~~-~L~~l  326 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGV-PSKLI  326 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTC-CCCEE
T ss_pred             EEeCCCccCccchhhhcCCc-chhhh
Confidence            876322      23455566 66655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.20  E-value=5.8e-08  Score=96.60  Aligned_cols=148  Identities=17%  Similarity=0.175  Sum_probs=79.6

Q ss_pred             CccEEEeecCCCCCCC-----CCcCCCCCCccEEEcccCcCCCCC-chhHhhCCCCCcEEEccCCCCCcc-Cccc-----
Q 041519          153 NLERVSLMENDFEEIP-----SNMSPHCEILSTLLLQHNKYLQRI-PECFFVHMHGLKVLNLCHTSIEVL-PNSV-----  220 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~-----~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~l-p~~i-----  220 (521)
                      .++.|++++|.+....     ..+....++|+.|++++|. +... ...+...+++|+.|+|++|.+... ...+     
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            5666777766665321     1111123567777777765 3321 222333455677777777766521 1112     


Q ss_pred             cCCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCcCcc-----cCccccCCCCCcccccccc---------
Q 041519          221 SDLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTWIEE-----VPEGMEMLENLSHLSLFMA---------  280 (521)
Q Consensus       221 ~~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~~~~~---------  280 (521)
                      ....+|++|++++|. +..     ++ .+....+|++|++++|.+..     ++..+...++|++|++..+         
T Consensus       152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            134567777777764 433     23 34556677777777776552     2344555566666666544         


Q ss_pred             -hHHHHhhHhcccceEEEeccccc
Q 041519          281 -AEEAARLSDRLDTFVGYFSTLND  303 (521)
Q Consensus       281 -~~~i~~L~~~L~~L~~~~~~~~~  303 (521)
                       ...+...+ +|++|++..+.+..
T Consensus       231 l~~~L~~~~-~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHP-SLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCS-SCCEEECTTSSCCH
T ss_pred             HHHHHHhCC-CCCEEeccCCCCCH
Confidence             22334456 77777776665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.08  E-value=3.9e-05  Score=76.89  Aligned_cols=227  Identities=15%  Similarity=0.136  Sum_probs=141.7

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      .+++.+.+..+ +..++...|..+ +|+.+.+..  .+..++...|.++.+|+.+++++|.++.+|.......+|+.+.+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred             CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence            47888888765 788888877664 699999876  37888887789999999999999888888876666788999998


Q ss_pred             ccCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEecccc--
Q 041519          232 RWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTLN--  302 (521)
Q Consensus       232 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~~--  302 (521)
                      ..  .+..++  .+..+.+|+.+++..+ ++.++.....-.+|+.+.+..-     ...+..++ +|+.+.+..+...  
T Consensus       211 p~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCP-ELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCT-TCCEEEEESSCCCCC
T ss_pred             CC--chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCC-CCCEEEeCCccccCC
Confidence            75  378887  5888889999998774 5666554322266777766432     34466777 8888877543322  


Q ss_pred             ---chhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcc-----cccCccccceEEEecccCcccccc
Q 041519          303 ---DFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEE-----TIVLPEDVQYLEMFGVDDVASLND  374 (521)
Q Consensus       303 ---~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~-----~~~~p~~L~~L~l~~~~~l~~l~~  374 (521)
                         .+..  .....+.+|+.+.+..+-..........+.+|+.+.+...-.     ...-. .|+.+.+.+..-      
T Consensus       287 ~~~~I~~--~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~------  357 (401)
T 4fdw_A          287 PEAMIHP--YCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP------  357 (401)
T ss_dssp             TTCEECT--TTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC------
T ss_pred             cccEECH--HHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC------
Confidence               1111  112234455555443211111222233445677777654311     11113 677887766421      


Q ss_pred             cccCCCcccccccchhhcc-CCCcEEEEec
Q 041519          375 VLPREQGLNLFSLRLLPAL-QNLEVLAVGY  403 (521)
Q Consensus       375 ~~~~~~~l~~~p~~~l~~L-~~L~~L~L~~  403 (521)
                              ..++...+..+ .+++.|++..
T Consensus       358 --------~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          358 --------PQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             --------CBCCCSSCCCSCTTCCEEEECG
T ss_pred             --------cccccccccCCCCCccEEEeCH
Confidence                    12222233445 3788999964

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.96  E-value=0.00026  Score=70.80  Aligned_cols=56  Identities=18%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEcc
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC  209 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~  209 (521)
                      +.+|+.+.+. +.++.++...|..|++|+.+.+..+  +..++...|.++..|+.+.+.
T Consensus        70 c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           70 CRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             CTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence            3455555554 2345555555555555555555432  444444444555555544443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.88  E-value=2e-06  Score=85.47  Aligned_cols=126  Identities=19%  Similarity=0.205  Sum_probs=87.4

Q ss_pred             CCCccEEEcccCcCCCCCchhHhh-----CCCCCcEEEccCCCCCc-cCccc-cCCcccceeecccCCCCCccC--Cc--
Q 041519          175 CEILSTLLLQHNKYLQRIPECFFV-----HMHGLKVLNLCHTSIEV-LPNSV-SDLTNLRSLLLRWCGILKRVP--SL--  243 (521)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~L~~~~l~~-lp~~i-~~L~~L~~L~l~~~~~l~~lp--~~--  243 (521)
                      ++.|+.|++++|. +.......+.     ..++|+.|+|++|.+.. -...+ ..+.+|++|++++|. +....  .+  
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence            3679999999998 6554433223     23799999999999872 22223 356789999999985 65443  23  


Q ss_pred             ---cCCCCCCEEEeeCCcCcc-----cCccccCCCCCcccccccc----------hHHHHhhHhcccceEEEeccccc
Q 041519          244 ---AKLLALQYLDLEGTWIEE-----VPEGMEMLENLSHLSLFMA----------AEEAARLSDRLDTFVGYFSTLND  303 (521)
Q Consensus       244 ---~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~~~~~----------~~~i~~L~~~L~~L~~~~~~~~~  303 (521)
                         ....+|++|++++|.++.     ++..+...++|++|++..+          ...+...+ +|++|++..+.+.+
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCH
Confidence               346889999999998764     4555677888888888765          22334556 77788777666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=1.4e-05  Score=69.58  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC-CCc-cCccccCC----cccceeecccCCCCCc
Q 041519          166 EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS-IEV-LPNSVSDL----TNLRSLLLRWCGILKR  239 (521)
Q Consensus       166 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-lp~~i~~L----~~L~~L~l~~~~~l~~  239 (521)
                      .+|.... .-.+|+.|++++|. ++...-..+..+++|+.|+|++|. ++. --..++.+    .+|++|++++|..+++
T Consensus        52 ~LP~~~~-~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           52 HLPTGPL-DKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GSCCCST-TCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cCCcccC-CCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            3454432 22478999999987 655443345789999999999985 662 22335554    3699999999988876


Q ss_pred             cC--CccCCCCCCEEEeeCC-cCcc
Q 041519          240 VP--SLAKLLALQYLDLEGT-WIEE  261 (521)
Q Consensus       240 lp--~~~~l~~L~~L~l~~~-~l~~  261 (521)
                      --  .+.++++|++|++++| .++.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCc
Confidence            54  5778899999999998 5654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=7.2e-05  Score=65.03  Aligned_cols=98  Identities=9%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCC----CCCcEEEccCCC-CCc-c
Q 041519          143 KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHM----HGLKVLNLCHTS-IEV-L  216 (521)
Q Consensus       143 ~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~L~~~~-l~~-l  216 (521)
                      .+|......-.+++|+++++.++...-.....|++|+.|++++|..++.-.-..+..+    ++|++|++++|. ++. -
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            3454332334799999999987754333335899999999999986665443334554    479999999985 772 2


Q ss_pred             CccccCCcccceeecccCCCCCcc
Q 041519          217 PNSVSDLTNLRSLLLRWCGILKRV  240 (521)
Q Consensus       217 p~~i~~L~~L~~L~l~~~~~l~~l  240 (521)
                      -..+..+++|++|++++|..++..
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHHhcCCCCCEEECCCCCCCCch
Confidence            245678999999999999877753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.65  E-value=0.0011  Score=66.07  Aligned_cols=128  Identities=13%  Similarity=0.085  Sum_probs=78.0

Q ss_pred             cccCCCc-ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-Cc
Q 041519          141 LLKFPGE-QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PN  218 (521)
Q Consensus       141 ~~~~p~~-~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~  218 (521)
                      +..++.. ...+.+|+.+.+..+ ++.++...|..|.+|+.+.+..+  +..+....|.++..+.......  +..+ ..
T Consensus        82 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~  156 (394)
T 4fs7_A           82 VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEITIPEG--VTVIGDE  156 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEECCTT--CCEECTT
T ss_pred             ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccccccccCcc--ccccchh
Confidence            4444432 345688999988654 77888888888999998777643  5556655566665444333222  2222 24


Q ss_pred             cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccc
Q 041519          219 SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLS  276 (521)
Q Consensus       219 ~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~  276 (521)
                      ++.++.+|+.+.+..+  +..++  .+..+.+|+.+.+..+ ++.++.. +.....|+.+.
T Consensus       157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            5667778888887652  55665  4677777887777654 4444332 44444555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.46  E-value=0.00015  Score=67.86  Aligned_cols=82  Identities=26%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             hCCCCCcEEEccCCCCCcc---CccccCCcccceeecccCCCCCccCCccCCC--CCCEEEeeCCcCc-ccCc-------
Q 041519          198 VHMHGLKVLNLCHTSIEVL---PNSVSDLTNLRSLLLRWCGILKRVPSLAKLL--ALQYLDLEGTWIE-EVPE-------  264 (521)
Q Consensus       198 ~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~--~L~~L~l~~~~l~-~lp~-------  264 (521)
                      .++++|+.|+|++|.+..+   |..++.+++|++|+|++|. +..+..+..+.  +|+.|++++|.+. .+|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            5688899999999987754   4556688899999999876 77665444444  8999999999765 3442       


Q ss_pred             cccCCCCCcccccccc
Q 041519          265 GMEMLENLSHLSLFMA  280 (521)
Q Consensus       265 ~i~~l~~L~~L~~~~~  280 (521)
                      .+..+.+|+.|+...+
T Consensus       246 il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          246 IRERFPKLLRLDGHEL  261 (267)
T ss_dssp             HHHHCTTCCEESSCBC
T ss_pred             HHHHCcccCeECCcCC
Confidence            3567888888876554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.38  E-value=9.9e-05  Score=69.09  Aligned_cols=78  Identities=22%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             CCCCccEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCCCccCccccCCc--ccceeecccCCCCCccC--------
Q 041519          174 HCEILSTLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSIEVLPNSVSDLT--NLRSLLLRWCGILKRVP--------  241 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~lp--------  241 (521)
                      .+++|++|++++|. +..++.  ..+..+++|++|+|++|.+..+ ..+..+.  +|++|++++|.....+|        
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45677777777776 555442  3346777777777777777654 2244444  77777777776333333        


Q ss_pred             CccCCCCCCEEE
Q 041519          242 SLAKLLALQYLD  253 (521)
Q Consensus       242 ~~~~l~~L~~L~  253 (521)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            145667777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.35  E-value=0.00013  Score=71.86  Aligned_cols=124  Identities=18%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCcccc--CCcccceeecccCC-------CCCccC--
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVS--DLTNLRSLLLRWCG-------ILKRVP--  241 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~--~L~~L~~L~l~~~~-------~l~~lp--  241 (521)
                      .+++|+.|.+.++... .++. +  .+++|+.|++..+.+. .....++  .+++|++|+|+.+.       .+..+.  
T Consensus       170 ~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             cCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            4456666666655312 2332 1  2556666666655544 1112222  45666666654211       011111  


Q ss_pred             -CccCCCCCCEEEeeCCcCcc-cCccc---cCCCCCcccccccc----------hHHHHhhHhcccceEEEecccc
Q 041519          242 -SLAKLLALQYLDLEGTWIEE-VPEGM---EMLENLSHLSLFMA----------AEEAARLSDRLDTFVGYFSTLN  302 (521)
Q Consensus       242 -~~~~l~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~~~~~----------~~~i~~L~~~L~~L~~~~~~~~  302 (521)
                       ....+++|++|++.+|.+.. .+..+   ..+++|++|++...          ...+..++ +|+.|+++.+.+.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~  320 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYLS  320 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCC
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCcCC
Confidence             11245666666666665431 11111   23556666665433          12234566 7777777655443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.34  E-value=0.00016  Score=71.22  Aligned_cols=15  Identities=20%  Similarity=0.341  Sum_probs=6.9

Q ss_pred             CCCCCEEEeeCCcCc
Q 041519          246 LLALQYLDLEGTWIE  260 (521)
Q Consensus       246 l~~L~~L~l~~~~l~  260 (521)
                      +++|++|+++.|.+.
T Consensus       278 ~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          278 LPQLETMDISAGVLT  292 (362)
T ss_dssp             GGGCSEEECCSSCCB
T ss_pred             CCCCCEEECCCCCCC
Confidence            344555555444433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.27  E-value=0.0068  Score=60.33  Aligned_cols=99  Identities=18%  Similarity=0.262  Sum_probs=49.9

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCc--CCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceee
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNK--YLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLL  230 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~  230 (521)
                      ++.+.+.. .++.+....|..|.+|+.+.+..+.  .+..+....|..+..|+.+.+..+ +..++ ..+..+.+|+.+.
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            55555543 2555555555566666666655431  244455555555555555554433 33332 2344555566655


Q ss_pred             cccCCCCCccC--CccCCCCCCEEEeeC
Q 041519          231 LRWCGILKRVP--SLAKLLALQYLDLEG  256 (521)
Q Consensus       231 l~~~~~l~~lp--~~~~l~~L~~L~l~~  256 (521)
                      +..  .+..++  .+....+|+.+.+..
T Consensus       144 lp~--~~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          144 IPE--GVTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             CCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccc--eeeeecccceecccccccccccc
Confidence            543  244444  355555666555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.21  E-value=0.00016  Score=63.89  Aligned_cols=84  Identities=14%  Similarity=0.063  Sum_probs=40.1

Q ss_pred             CCCCccEEEcccC-cCCCC-----CchhHhhCCCCCcEEEccCCCCCc-----cCccccCCcccceeecccCCCCCc---
Q 041519          174 HCEILSTLLLQHN-KYLQR-----IPECFFVHMHGLKVLNLCHTSIEV-----LPNSVSDLTNLRSLLLRWCGILKR---  239 (521)
Q Consensus       174 ~l~~L~~L~l~~~-~~~~~-----~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~---  239 (521)
                      ..+.|++|++++| . +..     +... +...++|++|+|++|.+..     +...+....+|++|++++|. +..   
T Consensus        34 ~~~~L~~L~L~~n~~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~  110 (185)
T 1io0_A           34 NDPDLEEVNLNNIMN-IPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI  110 (185)
T ss_dssp             TCTTCCEEECTTCTT-CCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred             cCCCCCEEEecCCCC-CCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence            3455555555555 3 322     1111 2344556666666655541     22333334456666666553 332   


Q ss_pred             --cC-CccCCCCCCEEEe--eCCcCc
Q 041519          240 --VP-SLAKLLALQYLDL--EGTWIE  260 (521)
Q Consensus       240 --lp-~~~~l~~L~~L~l--~~~~l~  260 (521)
                        +. .+....+|++|++  ++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCC
Confidence              22 3444555666666  455443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.14  E-value=0.00014  Score=64.39  Aligned_cols=107  Identities=17%  Similarity=0.101  Sum_probs=78.4

Q ss_pred             cCCccEEEeecC-CCCC-----CCCCcCCCCCCccEEEcccCcCCCCCch----hHhhCCCCCcEEEccCCCCCc-----
Q 041519          151 EENLERVSLMEN-DFEE-----IPSNMSPHCEILSTLLLQHNKYLQRIPE----CFFVHMHGLKVLNLCHTSIEV-----  215 (521)
Q Consensus       151 ~~~l~~L~l~~~-~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~~-----  215 (521)
                      .+.+++|++.+| .+..     +...+ ...++|++|++++|. +..-..    ..+...+.|++|+|++|.+..     
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            358999999998 7753     22222 356899999999998 554221    123567899999999999873     


Q ss_pred             cCccccCCcccceeec--ccCCCCCc-----cC-CccCCCCCCEEEeeCCcCc
Q 041519          216 LPNSVSDLTNLRSLLL--RWCGILKR-----VP-SLAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       216 lp~~i~~L~~L~~L~l--~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~  260 (521)
                      +...+....+|++|++  ++|. +..     +. .+....+|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5667777889999999  7765 554     33 3556688999999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.09  E-value=0.013  Score=58.23  Aligned_cols=105  Identities=15%  Similarity=0.160  Sum_probs=78.4

Q ss_pred             ccccCCccEEEeecC---CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCC
Q 041519          148 QEWEENLERVSLMEN---DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDL  223 (521)
Q Consensus       148 ~~~~~~l~~L~l~~~---~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L  223 (521)
                      ...+.+|+.+.+..+   .++.++...|..|.+|+.+.+..+  +..++...|..+.+|+.+.+..+ +..++ ..+...
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c  159 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC  159 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence            345688999998765   377788888888999998887654  77788877899999999999754 44443 456678


Q ss_pred             cccceeecccCCCCCccC-CccCCCCCCEEEeeCC
Q 041519          224 TNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGT  257 (521)
Q Consensus       224 ~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~  257 (521)
                      ..|+.+.+..  .+..+. ....-.+|+.+.+...
T Consensus       160 ~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~  192 (394)
T 4gt6_A          160 YSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK  192 (394)
T ss_dssp             TTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT
T ss_pred             cccccccccc--eeeEeccccccccceeEEEECCc
Confidence            8899999876  377776 3333467888877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.34  E-value=0.0068  Score=49.89  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=40.5

Q ss_pred             cEEEeecCCCC--CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519          155 ERVSLMENDFE--EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       155 ~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  214 (521)
                      ..++.+++.++  .+|..+.   .+|+.|+|++|. +..++..+|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP---VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC---TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC---cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence            35666667776  7776654   467788888887 77787777777888888888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.48  E-value=0.081  Score=52.00  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=46.3

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ  250 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~  250 (521)
                      .+.+++.+.+..+  +..+....|.++..|+.+.+..+ ++.+. ..+.+..+|+.+.+..  .+..++  .+..+.+|+
T Consensus       215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCC
T ss_pred             cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccc
Confidence            4455555555432  34444444455555555555433 33332 2333445555555543  244444  345555555


Q ss_pred             EEEeeCCcCcccCcc-ccCCCCCccccc
Q 041519          251 YLDLEGTWIEEVPEG-MEMLENLSHLSL  277 (521)
Q Consensus       251 ~L~l~~~~l~~lp~~-i~~l~~L~~L~~  277 (521)
                      .+.+.++.++.++.. +.++.+|+.+.+
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEc
Confidence            555555555544432 444445554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.36  E-value=0.063  Score=52.81  Aligned_cols=122  Identities=15%  Similarity=0.268  Sum_probs=85.3

Q ss_pred             ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccce
Q 041519          150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRS  228 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~  228 (521)
                      ....++.+.+..+ +..++...+..+..|+.+.+..+  +..+....|.++..|+.+.+..+ +..++ ..+..+.+|+.
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            3456677666543 55666666668888888888654  66777777788888888888644 55554 34567888888


Q ss_pred             eecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccc
Q 041519          229 LLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSL  277 (521)
Q Consensus       229 L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~  277 (521)
                      +.+.++ .++.++  .+.++.+|+.+.+..+ ++.++.. +.++.+|+.+.+
T Consensus       291 i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          291 VVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            888764 377776  5788888888888653 6666543 666777777755

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.41  E-value=0.11  Score=42.43  Aligned_cols=54  Identities=17%  Similarity=0.260  Sum_probs=44.9

Q ss_pred             EEEecCcccc--cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcC
Q 041519          133 FMVTAGLRLL--KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY  188 (521)
Q Consensus       133 ~~~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  188 (521)
                      .+..++..+.  .+|..  ...++++|++++|.++.++...+..+++|++|++.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455666776  77753  456899999999999999999998999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	521
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 158 SLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP 217
            L E        +       L+ L        Q        ++  L  L L   +I  + 
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 218 NSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277
             VS LT L+ L      +   V SLA L  + +L      I ++   +  L  ++ L L
Sbjct: 324 -PVSSLTKLQRLFFANNKV-SDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 139 LRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFV 198
           L   +              +L  N+ +    +   + + L+ L L  N      P     
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VS 326

Query: 199 HMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEG 256
            +  L+ L   +  +  +  S+++LTN+  L       +  +  LA L  +  L L  
Sbjct: 327 SLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLND 382

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 5   QVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTK 64
            V    ++++N+ +E     P  ++    S    +   +     N+L       +     
Sbjct: 202 PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLE------SRGLVG 254

Query: 65  VFGRLEFSYHRLKDEKLQQCF 85
           V     +SY  L    LQ+C 
Sbjct: 255 VECITPYSYKSL-AMALQRCV 274

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209
                +   L ++      S             L +                 L+ LN+ 
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 210 HTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEML 269
           +  +  LP        L  L+  +   L  VP L     L+ L +E   + E P+  E +
Sbjct: 293 NNKLIELPAL---PPRLERLIASFNH-LAEVPEL--PQNLKQLHVEYNPLREFPDIPESV 346

Query: 270 ENL 272
           E+L
Sbjct: 347 EDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209
              +LE +++  N   E+P+        L  L+   N  L  +PE        LK L++ 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPP----RLERLIASFNH-LAEVPEL----PQNLKQLHVE 332

Query: 210 HTSIEVLPNSVSDLTNLR 227
           +  +   P+    + +LR
Sbjct: 333 YNPLREFPDIPESVEDLR 350

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
           NL  + L+ N   +I          L  L L  N+ L+ +PE     +  L+V     T 
Sbjct: 56  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITK 114

Query: 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLEN 271
           +     +  +   +  L             +   +  L Y+ +  T I  +P+G  +  +
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPS 172

Query: 272 LSHLSL 277
           L+ L L
Sbjct: 173 LTELHL 178

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 184 QHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSL 243
             N  L+ +P   F    G  +L++  T I  LP+    L NL+ L  R    LK++P+L
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPTL 241

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 184 QHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVPS 242
              K               L  L+L +  I   LP  ++ L  L SL + +  +   +P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 243 LAKLLALQYLDLEG 256
              L          
Sbjct: 287 GGNLQRFDVSAYAN 300

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 7/151 (4%)

Query: 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216
           V       +EIP ++  H    + LLL  N+  +   +  F  +  L  L L    +  +
Sbjct: 13  VDCTGRGLKEIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 217 PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSH 274
             +  +  +    L      +K +       L  L+ L+L    I  V  G    E+L+ 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG--SFEHLNS 127

Query: 275 LSLFMAAEEAARLSDRLDTFVGYFSTLNDFN 305
           L+    A      +  L  F  +    +   
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNG 158

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 159 LMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN 218
           L     E++   MS   +  S   L     L+  P+   V  +   VLN   +    L  
Sbjct: 4   LKPEQVEQLKLIMSKRYD-GSQQALDLKG-LRSDPD--LVAQNIDVVLNRRSSMAATLRI 59

Query: 219 SVSDLTNLRSLLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPEG 265
              ++  L SL L    + +       + K   L+ L+L G  ++   E 
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	521
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.36
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.22
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.18
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.16
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.22

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.5e-15  Score=145.61  Aligned_cols=104  Identities=27%  Similarity=0.367  Sum_probs=64.5

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~  232 (521)
                      .+.++-.+..++++|..+.   +++++|++++|+ ++.+|+..|.++++|++|++++|.+..+ |..+.++.+|++|+++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~---~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC---TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccCCCCC---CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3455555556666666554   456677777766 6666665456667777777777766655 4456667777777777


Q ss_pred             cCCCCCccC-CccCCCCCCEEEeeCCcCcccCc
Q 041519          233 WCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE  264 (521)
Q Consensus       233 ~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~  264 (521)
                      +|. ++.+| .+  ...+..|++..+.+..++.
T Consensus        88 ~n~-l~~l~~~~--~~~l~~L~~~~n~l~~l~~  117 (305)
T d1xkua_          88 KNQ-LKELPEKM--PKTLQELRVHENEITKVRK  117 (305)
T ss_dssp             SSC-CSBCCSSC--CTTCCEEECCSSCCCBBCH
T ss_pred             CCc-cCcCccch--hhhhhhhhccccchhhhhh
Confidence            664 66666 32  2456666666665555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=3.4e-15  Score=145.61  Aligned_cols=281  Identities=18%  Similarity=0.159  Sum_probs=135.6

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      ++++|+++++.++.+|+.    .++|++|++++|. ++.+|..    +.+|+.|++++|.++.++.-   ...|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~----~~~L~~L~Ls~N~-l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL----PPHLESLVASCNS-LTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC----CTTCSEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCCCC----CCCCCEEECCCCC-Ccccccc----hhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            466677777777666642    3566777777665 6666642    34666777777666655431   1346777777


Q ss_pred             cCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-hHHHHhhHhcccceEEEeccccchh------
Q 041519          233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-AEEAARLSDRLDTFVGYFSTLNDFN------  305 (521)
Q Consensus       233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-~~~i~~L~~~L~~L~~~~~~~~~~~------  305 (521)
                      +|. +..+|.++.+.+|++|+++++.+...|.....+..+........ ...++.++ .++.+.+..+......      
T Consensus       107 ~n~-l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~-~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         107 NNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLP-FLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             SSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCT-TCCEEECCSSCCSSCCCCCTTC
T ss_pred             ccc-cccccchhhhccceeeccccccccccccccccccchhhccccccccccccccc-cceecccccccccccccccccc
Confidence            664 66666556677777777777666655554433333222111111 12233444 4444443322211100      


Q ss_pred             ----------hhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcc--cccCccccceEEEecc--cCccc
Q 041519          306 ----------IYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEE--TIVLPEDVQYLEMFGV--DDVAS  371 (521)
Q Consensus       306 ----------~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~--~~~~p~~L~~L~l~~~--~~l~~  371 (521)
                                ..+.....++.|+.+.+........   +....++..+.+.....  ....+..+....+...  ..+..
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~  261 (353)
T d1jl5a_         185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL---PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE  261 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC---CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC
T ss_pred             ccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccc
Confidence                      0011111223333332221110000   00011122222222111  0111222322222111  01111


Q ss_pred             ccccccC--CCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccc
Q 041519          372 LNDVLPR--EQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKS  449 (521)
Q Consensus       372 l~~~~~~--~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~  449 (521)
                      ++.....  +.. ..++ .....+++|++|+|++| .+..++                   ..+++|+.|++.++ ++++
T Consensus       262 l~~~~~~~~~~~-~~~~-~~~~~~~~L~~L~Ls~N-~l~~lp-------------------~~~~~L~~L~L~~N-~L~~  318 (353)
T d1jl5a_         262 LPPNLYYLNASS-NEIR-SLCDLPPSLEELNVSNN-KLIELP-------------------ALPPRLERLIASFN-HLAE  318 (353)
T ss_dssp             CCTTCCEEECCS-SCCS-EECCCCTTCCEEECCSS-CCSCCC-------------------CCCTTCCEEECCSS-CCSC
T ss_pred             ccchhccccccc-Cccc-cccccCCCCCEEECCCC-ccCccc-------------------cccCCCCEEECCCC-cCCc
Confidence            1000000  000 0000 11134678999999988 455554                   24799999999886 5887


Q ss_pred             cccCCCcccCCCccEEEEecCCCcccccCc
Q 041519          450 ICSDNGVLVCNSLQEIEVYNCPKLKRLSLS  479 (521)
Q Consensus       450 ~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~  479 (521)
                      ++.     .+++|++|++++|+ |+++|..
T Consensus       319 l~~-----~~~~L~~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         319 VPE-----LPQNLKQLHVEYNP-LREFPDI  342 (353)
T ss_dssp             CCC-----CCTTCCEEECCSSC-CSSCCCC
T ss_pred             ccc-----ccCCCCEEECcCCc-CCCCCcc
Confidence            765     35789999999997 9999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=6.5e-15  Score=145.51  Aligned_cols=303  Identities=15%  Similarity=0.175  Sum_probs=177.5

Q ss_pred             ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCccccee
Q 041519          150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSL  229 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  229 (521)
                      .+.++++|++.++.++.+. ++. .+++|++|++++|+ ++.+++  ++++++|++|++++|.+..++. ++.+.+|++|
T Consensus        42 ~l~~l~~L~l~~~~I~~l~-gl~-~L~nL~~L~Ls~N~-l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID-GVE-YLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGG-GCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCcc-ccc-cCCCCCEEeCcCCc-CCCCcc--ccCCcccccccccccccccccc-cccccccccc
Confidence            3468999999999998874 443 78999999999998 888886  6899999999999999987765 8899999999


Q ss_pred             ecccCCCCCccCCccCCCCCCEEEeeCCcCcccCcccc-----------CCCCCcccccc-------------cchHHHH
Q 041519          230 LLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGME-----------MLENLSHLSLF-------------MAAEEAA  285 (521)
Q Consensus       230 ~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~-----------~l~~L~~L~~~-------------~~~~~i~  285 (521)
                      +++++. +..++.......+..+....+.+..+.....           ....+..+...             .......
T Consensus       116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         116 TLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            998865 6666544445566666655543322211000           00001111000             0023344


Q ss_pred             hhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceE
Q 041519          286 RLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYL  361 (521)
Q Consensus       286 ~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L  361 (521)
                      .++ +++.+.+..+.......    .....+|+.+.+........ .......+|+.+.+.++...    ....+.|+.|
T Consensus       195 ~l~-~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         195 KLT-NLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             GCT-TCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccc-ccceeeccCCccCCCCc----ccccCCCCEEECCCCCCCCc-chhhcccccchhccccCccCCCCcccccccCCEe
Confidence            555 56655554443332211    11233444443322111100 01223345555555554221    1223466777


Q ss_pred             EEecccCccccccc---------ccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhccccccccc
Q 041519          362 EMFGVDDVASLNDV---------LPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVT  432 (521)
Q Consensus       362 ~l~~~~~l~~l~~~---------~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~  432 (521)
                      +++++. +..++..         ....+.+..++  .+..+++++.|+++++ .+.+++..                 ..
T Consensus       269 ~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n-~l~~l~~l-----------------~~  327 (384)
T d2omza2         269 KLGANQ-ISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFN-NISDISPV-----------------SS  327 (384)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSS-CCSCCGGG-----------------GG
T ss_pred             eccCcc-cCCCCcccccccccccccccccccccc--ccchhcccCeEECCCC-CCCCCccc-----------------cc
Confidence            665542 1111110         01111222222  2467888999999877 44544321                 46


Q ss_pred             CCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          433 LPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       433 f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      +|+|++|++.++ +++.++.   ...+|+|++|++++| +++.+|. +.+        +++|++|++.
T Consensus       328 l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~-l~~--------l~~L~~L~L~  381 (384)
T d2omza2         328 LTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLTP-LAN--------LTRITQLGLN  381 (384)
T ss_dssp             CTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCGG-GTT--------CTTCSEEECC
T ss_pred             CCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCChh-hcc--------CCCCCEeeCC
Confidence            899999999997 6777653   345799999999987 5888764 434        4559999886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.2e-14  Score=139.21  Aligned_cols=121  Identities=21%  Similarity=0.280  Sum_probs=100.1

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+.+++.+|...  .+++++|++++|.++.+|+..+..+++|++|++++|. +..+++..|.++++|++|++++|.
T Consensus        14 ~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          14 VVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             EEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecccCCc
Confidence            3455667788888743  4689999999999999998877799999999999998 777776667999999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcC
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWI  259 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l  259 (521)
                      ++.+|..+  ...++.|++.+|. +..++  .+.....+..++...+..
T Consensus        91 l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~  136 (305)
T d1xkua_          91 LKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPL  136 (305)
T ss_dssp             CSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             cCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccc
Confidence            99999754  4578999999875 77776  466778888888887743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=2.1e-15  Score=145.17  Aligned_cols=123  Identities=20%  Similarity=0.408  Sum_probs=100.9

Q ss_pred             CccEEEeecCCCC---CCCCCcCCCCCCccEEEccc-CcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccc
Q 041519          153 NLERVSLMENDFE---EIPSNMSPHCEILSTLLLQH-NKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLR  227 (521)
Q Consensus       153 ~l~~L~l~~~~~~---~l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~  227 (521)
                      +++.|++.++.+.   .+|+.+. ++++|++|++++ |...+.+|..+ +++++|++|++++|.+..+ |..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            6888999998887   4777776 899999999987 55455788876 8999999999999998854 56678899999


Q ss_pred             eeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCCCC-ccccc
Q 041519          228 SLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLENL-SHLSL  277 (521)
Q Consensus       228 ~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L-~~L~~  277 (521)
                      ++++++|.....+| .++++.+|+++++++|.+. .+|..++.+.++ +.+..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~  181 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI  181 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccc
Confidence            99999988777888 8999999999999999776 788888777765 44433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=4.7e-14  Score=139.25  Aligned_cols=286  Identities=17%  Similarity=0.196  Sum_probs=163.8

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+. ....++++++|++++|.++.+++  +.++++|+.|++++|. +..+++  ++.+++|+.|+++++.
T Consensus        48 ~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~-i~~i~~--l~~l~~L~~L~~~~~~  121 (384)
T d2omza2          48 TLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             EEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccc-cccccc--cccccccccccccccc
Confidence            4455566666664 45678899999999999999875  4589999999999998 777776  5899999999999887


Q ss_pred             CCccCccccCCcccceeecccCC-----------------------------------------CCCccC-CccCCCCCC
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCG-----------------------------------------ILKRVP-SLAKLLALQ  250 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~-----------------------------------------~l~~lp-~~~~l~~L~  250 (521)
                      +..++.. .....+..+....+.                                         .....+ ....+.+++
T Consensus       122 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         122 ITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             CCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            6543321 111111111111000                                         000111 244456666


Q ss_pred             EEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecC
Q 041519          251 YLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSAS  326 (521)
Q Consensus       251 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~  326 (521)
                      .+++++|.++.++. .+...+|++|++...    ...+..++ +|+.|++..+......    ....+.+|+.+.+....
T Consensus       201 ~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         201 SLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA----PLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSC
T ss_pred             eeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhccc-ccchhccccCccCCCC----cccccccCCEeeccCcc
Confidence            66666665555443 344555665555433    23345555 6666655444333221    12233444444432211


Q ss_pred             CCCCCccccceeeeeeeeeecCcc----cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEe
Q 041519          327 GKRGFLEVDKSVRLFACKICETEE----TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVG  402 (521)
Q Consensus       327 ~~~~~~~~~~~~~L~~L~i~~~~~----~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~  402 (521)
                      ... .........++.+....+..    .....+.++.|+++++              .+..++  .+..+++|++|+++
T Consensus       275 l~~-~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n--------------~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         275 ISN-ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--------------NISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             CCC-CGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS--------------CCSCCG--GGGGCTTCCEEECC
T ss_pred             cCC-CCccccccccccccccccccccccccchhcccCeEECCCC--------------CCCCCc--ccccCCCCCEEECC
Confidence            110 00111222333333333311    1223456777776654              122222  14789999999999


Q ss_pred             cccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecC
Q 041519          403 YCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNC  470 (521)
Q Consensus       403 ~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C  470 (521)
                      +| .++.++..                 ..+++|++|++.++ +++.++.   ...+++|+.|+|++.
T Consensus       338 ~n-~l~~l~~l-----------------~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NN-KVSDVSSL-----------------ANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SS-CCCCCGGG-----------------GGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred             CC-CCCCChhH-----------------cCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence            98 55555321                 35899999999885 5776653   345789999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-14  Score=132.67  Aligned_cols=106  Identities=22%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519          153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR  232 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  232 (521)
                      ....++.+++.++.+|..+.   +++++|++++|. +..+|...|.++++|++|+|++|.++.+|. ++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp---~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC---TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCCeeCcCcC---cCCCEEECcCCc-CCCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence            44556777777888887664   578888888887 778887667888888888888888887764 5778888888888


Q ss_pred             cCCCCCccC-CccCCCCCCEEEeeCCcCcccCc
Q 041519          233 WCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE  264 (521)
Q Consensus       233 ~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~  264 (521)
                      +|. +...| .+..+.+|+.|+++++.+..++.
T Consensus        86 ~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~  117 (266)
T d1p9ag_          86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPL  117 (266)
T ss_dssp             SSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred             ccc-ccccccccccccccccccccccccceeec
Confidence            875 77777 77888888888888887666544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-14  Score=133.50  Aligned_cols=165  Identities=24%  Similarity=0.235  Sum_probs=136.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+.++..+|...  .+++++|++++|.++.++...+..+++|++|++++|. ++.++.  ++.+++|++|++++|.
T Consensus        14 ~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~--~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          14 EVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC--CSCCTTCCEEECCSSC
T ss_pred             EEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc--cccccccccccccccc
Confidence            3456677788888643  3689999999999999998877799999999999998 888876  4789999999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hHH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEE  283 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~  283 (521)
                      ++..|..+..+++|++|++++|. +..++  .+..+.++++|++.+|.+..+|.. +..+.+++.+++...      +..
T Consensus        89 l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_          89 LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             ccccccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence            99989989999999999999986 66665  688999999999999999988765 456788888877654      344


Q ss_pred             HHhhHhcccceEEEeccccch
Q 041519          284 AARLSDRLDTFVGYFSTLNDF  304 (521)
Q Consensus       284 i~~L~~~L~~L~~~~~~~~~~  304 (521)
                      ++.++ +|++|++..+.++.+
T Consensus       168 ~~~l~-~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         168 LNGLE-NLDTLLLQENSLYTI  187 (266)
T ss_dssp             TTTCT-TCCEEECCSSCCCCC
T ss_pred             ccccc-ccceeecccCCCccc
Confidence            67777 888887766655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=1.2e-14  Score=139.74  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=84.2

Q ss_pred             CCccEEEcccCcCCC--CCchhHhhCCCCCcEEEccC-CCCC-ccCccccCCcccceeecccCCCCCcc-C-CccCCCCC
Q 041519          176 EILSTLLLQHNKYLQ--RIPECFFVHMHGLKVLNLCH-TSIE-VLPNSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLAL  249 (521)
Q Consensus       176 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L  249 (521)
                      .+++.|+++++....  .+|.++ +++++|++|+|++ |.+. .+|.+|++|++|++|++++|. +..+ | .+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhcccc-ccccccccccchhhh
Confidence            468899999987333  477776 8999999999987 6776 899999999999999999987 5555 4 68899999


Q ss_pred             CEEEeeCCc-CcccCccccCCCCCccccccc
Q 041519          250 QYLDLEGTW-IEEVPEGMEMLENLSHLSLFM  279 (521)
Q Consensus       250 ~~L~l~~~~-l~~lp~~i~~l~~L~~L~~~~  279 (521)
                      +++++++|. ...+|..++++++++++++..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~  158 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccc
Confidence            999999994 447788888888888887654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.2e-13  Score=124.40  Aligned_cols=143  Identities=28%  Similarity=0.406  Sum_probs=113.2

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC-C
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-T  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~  211 (521)
                      .+...+.+++.+|..  ..+.+++|++++|.++.+|...+..+++|++|++++|. +..++...+..+..++.+.... +
T Consensus        15 ~v~c~~~~L~~iP~~--ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCC--CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccc-cccccccccccccccccccccccc
Confidence            445566677788764  34678999999999999998878899999999999998 8888877778889999988764 4


Q ss_pred             CCCcc-CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519          212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM  279 (521)
Q Consensus       212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~  279 (521)
                      .+..+ |..+.++++|++|++++|. +..++  .++...+|+.+++++|.++.+|.. +..+++|++|++..
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhccccc
Confidence            56666 5678899999999999986 66665  578889999999999999988754 55566666665443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.8e-12  Score=120.03  Aligned_cols=118  Identities=20%  Similarity=0.284  Sum_probs=92.6

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeeccc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRW  233 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~  233 (521)
                      ..+...+..++.+|..+.   +.+++|++++|+ ++.+|...|.++++|++|+++++.+..++ ..+..+..++.+....
T Consensus        14 ~~v~c~~~~L~~iP~~ip---~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP---AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC---TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCCccCCCCC---CCCCEEECcCCc-CCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            345667777889988765   578999999998 89999877799999999999999988665 4456788899998877


Q ss_pred             CCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccc
Q 041519          234 CGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLS  276 (521)
Q Consensus       234 ~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~  276 (521)
                      +..+..++  .+.++.+|++|++++|.+..++.. ++...+|+.++
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~  135 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhh
Confidence            77788886  689999999999999987766543 44444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.9e-12  Score=116.24  Aligned_cols=106  Identities=22%  Similarity=0.309  Sum_probs=85.8

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cC-ccccCCcccceeecc
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LP-NSVSDLTNLRSLLLR  232 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp-~~i~~L~~L~~L~l~  232 (521)
                      +.++..+..++.+|..++   ++++.|++++|. +..+|...|.++++|++|++++|.+.. ++ ..+..+.+++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            577778888888888765   578999999988 888888777899999999999998763 43 456788999999887


Q ss_pred             cCCCCCccC--CccCCCCCCEEEeeCCcCcccCc
Q 041519          233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE  264 (521)
Q Consensus       233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~  264 (521)
                      .+..+...+  .+..+++|++++++++.+...+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred             ccccccccccccccccccccccccchhhhccccc
Confidence            766677776  47899999999999998776554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.36  E-value=1e-11  Score=120.40  Aligned_cols=268  Identities=18%  Similarity=0.180  Sum_probs=153.5

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+..++..++.+|+   ..+++++|++++|.++.+|..    ..+|+.|++.+|. +..++.    -.+.|++|++++|.
T Consensus        42 ~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~-l~~l~~----lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          42 ELELNNLGLSSLPE---LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQ  109 (353)
T ss_dssp             EEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSC
T ss_pred             EEEeCCCCCCCCCC---CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhcc-cchhhh----hccccccccccccc
Confidence            45566677778885   357899999999999999864    3689999999987 776664    13569999999999


Q ss_pred             CCccCccccCCcccceeecccCCCCCccC-C-------------------ccCCCCCCEEEeeCCcCcccCccccCCCCC
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP-S-------------------LAKLLALQYLDLEGTWIEEVPEGMEMLENL  272 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~-------------------~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L  272 (521)
                      +..+|. ++.+.+|++|++++|. +...| .                   ++.+..++.+.+.++....++.......  
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~--  185 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE--  185 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC--
T ss_pred             cccccc-hhhhccceeecccccc-ccccccccccccchhhccccccccccccccccceeccccccccccccccccccc--
Confidence            999886 6889999999998875 44433 2                   2334445555555554433332211111  


Q ss_pred             ccccccc----chHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCC-----C-----cccccee
Q 041519          273 SHLSLFM----AAEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRG-----F-----LEVDKSV  338 (521)
Q Consensus       273 ~~L~~~~----~~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~-----~-----~~~~~~~  338 (521)
                       .+....    .......++ .|+.+.+..+........      ..++.............     .     .......
T Consensus       186 -~l~~~~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         186 -SIVAGNNILEELPELQNLP-FLTTIYADNNLLKTLPDL------PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             -EEECCSSCCSSCCCCTTCT-TCCEEECCSSCCSSCCSC------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             -ccccccccccccccccccc-cccccccccccccccccc------ccccccccccccccccccccccccccccccccccc
Confidence             111100    012234556 666666544332221111      11111111110000000     0     0000001


Q ss_pred             eeeee-------eeecC--cccccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhh
Q 041519          339 RLFAC-------KICET--EETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEE  409 (521)
Q Consensus       339 ~L~~L-------~i~~~--~~~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~  409 (521)
                      .+..+       .....  ......+++|++|++++|.              ++.+|    ..+++|+.|++++| .++.
T Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~--------------l~~lp----~~~~~L~~L~L~~N-~L~~  318 (353)
T d1jl5a_         258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK--------------LIELP----ALPPRLERLIASFN-HLAE  318 (353)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC--------------CSCCC----CCCTTCCEEECCSS-CCSC
T ss_pred             ccccccchhcccccccCccccccccCCCCCEEECCCCc--------------cCccc----cccCCCCEEECCCC-cCCc
Confidence            11111       11111  1112346789999887752              23333    23678999999887 4666


Q ss_pred             hhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEe
Q 041519          410 IVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVY  468 (521)
Q Consensus       410 l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~  468 (521)
                      ++.                   .+++|++|++++++ +++++.     ..++|+.|.+.
T Consensus       319 l~~-------------------~~~~L~~L~L~~N~-L~~lp~-----~~~~L~~L~~~  352 (353)
T d1jl5a_         319 VPE-------------------LPQNLKQLHVEYNP-LREFPD-----IPESVEDLRMN  352 (353)
T ss_dssp             CCC-------------------CCTTCCEEECCSSC-CSSCCC-----CCTTCCEEECC
T ss_pred             ccc-------------------ccCCCCEEECcCCc-CCCCCc-----cccccCeeECc
Confidence            542                   35789999999986 898875     33578888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.8e-12  Score=115.48  Aligned_cols=144  Identities=18%  Similarity=0.239  Sum_probs=112.9

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      ++++++|++.++.+..++. + ..+++|++|++++|+ +..+++  ++++++|++|++++|.+..++. ++.+++|++|+
T Consensus        39 l~~l~~L~l~~~~i~~l~~-l-~~l~nL~~L~Ls~N~-l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG-V-EYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCccc-c-ccCCCcCcCcccccc-ccCccc--ccCCcccccccccccccccccc-ccccccccccc
Confidence            4688899999998888753 3 378899999999987 777776  5889999999999988887764 78889999999


Q ss_pred             cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccc
Q 041519          231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLND  303 (521)
Q Consensus       231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~  303 (521)
                      +++|. ...++.+..+.+|+.|++++|.+..+| .+..+++|+.|++...    ...++.++ +|++|++..+.+++
T Consensus       113 l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~-~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPLANLT-TLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC
T ss_pred             ccccc-cccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCccccCCC-CCCEEECCCCCCCC
Confidence            98875 555556778899999999998887765 4777888888877654    33477788 88888877665544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=2.7e-12  Score=115.33  Aligned_cols=159  Identities=22%  Similarity=0.295  Sum_probs=105.0

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL  230 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  230 (521)
                      +.++++|++.++.+..++. + ..+++|++|++++|+ +..+++  ++.+++|++|++++|.++.+|. +..+++|++|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~-l-~~l~~L~~L~L~~n~-i~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCchh-H-hhCCCCCEEeCCCcc-ccCccc--cccCcccccccccccccccccc-ccccccccccc
Confidence            3567777887777777653 3 367788888888776 666664  4677788888888877777663 67777888888


Q ss_pred             cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhh
Q 041519          231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNI  306 (521)
Q Consensus       231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~  306 (521)
                      +++|. +..++.+..+.+++.+++++|.+...+ .+..+++|+++.+...    ...++.++ +|++|++..+.++++  
T Consensus       119 l~~~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~l~~l~-~L~~L~Ls~N~i~~l--  193 (210)
T d1h6ta2         119 LEHNG-ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDL--  193 (210)
T ss_dssp             CTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCBC--
T ss_pred             ccccc-ccccccccccccccccccccccccccc-cccccccccccccccccccccccccCCC-CCCEEECCCCCCCCC--
Confidence            87765 556666777777888888777766544 3566677777766543    23366677 777777765554432  


Q ss_pred             hhhccCCCCCCcceee
Q 041519          307 YVKSTDGRGSKNYCLL  322 (521)
Q Consensus       307 ~~~~~~~l~~L~~l~~  322 (521)
                        ..+..+++|+.+.+
T Consensus       194 --~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         194 --RALAGLKNLDVLEL  207 (210)
T ss_dssp             --GGGTTCTTCSEEEE
T ss_pred             --hhhcCCCCCCEEEc
Confidence              22333445555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=2.2e-12  Score=105.25  Aligned_cols=103  Identities=23%  Similarity=0.365  Sum_probs=81.0

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccC
Q 041519          155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWC  234 (521)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~  234 (521)
                      |.|++++|.++.++. + ..+++|+.|++++|. +..+|+.+ +.+++|++|++++|.++.+|. ++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~-l-~~l~~L~~L~ls~N~-l~~lp~~~-~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVDG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC-G-GGGTTCCEEECCSSC-CCCCCGGG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc-c-ccCCCCCEEECCCCc-cCcchhhh-hhhhcccccccccccccccCc-cccccccCeEECCCC
Confidence            578888888887764 4 478888888888887 78887764 788888888888888887764 788888888888887


Q ss_pred             CCCCccC---CccCCCCCCEEEeeCCcCcccC
Q 041519          235 GILKRVP---SLAKLLALQYLDLEGTWIEEVP  263 (521)
Q Consensus       235 ~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp  263 (521)
                      . +..+|   .++.+++|++|++++|.+...+
T Consensus        76 ~-i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             C-CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             c-cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            5 76665   3677888888888888766543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=4.7e-12  Score=113.74  Aligned_cols=155  Identities=23%  Similarity=0.336  Sum_probs=126.6

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..++. ...++++++|++++|.++.+++ + ..+++|++|++++|+ ++.++.  ++.+++|+.|++++|.
T Consensus        50 ~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~-~-~~l~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          50 QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             EEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTSC
T ss_pred             EEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc-c-ccCcccccccccccc-cccccc--cccccccccccccccc
Confidence            44555666666654 5678899999999999998874 3 489999999999998 888875  5899999999999998


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLS  288 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~  288 (521)
                      +..++ .+..+.+|+.+++++|. +...+.+..+++|+++++++|.+..++. ++++++|++|++...    ...+..++
T Consensus       124 ~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~  200 (210)
T d1h6ta2         124 ISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK  200 (210)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred             ccccc-ccccccccccccccccc-cccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChhhcCCC
Confidence            87765 47889999999999875 7776677889999999999998888764 888999999988754    24577888


Q ss_pred             hcccceEEE
Q 041519          289 DRLDTFVGY  297 (521)
Q Consensus       289 ~~L~~L~~~  297 (521)
                       +|+.|+++
T Consensus       201 -~L~~L~Ls  208 (210)
T d1h6ta2         201 -NLDVLELF  208 (210)
T ss_dssp             -TCSEEEEE
T ss_pred             -CCCEEEcc
Confidence             88888775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=6.8e-12  Score=111.64  Aligned_cols=151  Identities=21%  Similarity=0.340  Sum_probs=120.3

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS  212 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  212 (521)
                      .+...+..+..+. ....++++++|++++|.++.+++  +..+++|+.|++++|. ...++.  ++++++|+.|+++++.
T Consensus        44 ~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          44 TLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECCSSC
T ss_pred             EEECCCCCCCCcc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccc-cccccc--cccccccccccccccc
Confidence            3444555566554 35667899999999999998875  3589999999999998 777775  5899999999999988


Q ss_pred             CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhH
Q 041519          213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLS  288 (521)
Q Consensus       213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~  288 (521)
                      +..++ .+..+++|++|++++|. +..+|.+..+.+|+.|++.+|.++.++. ++++++|++|++...    ...++.++
T Consensus       118 ~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~l~~L~  194 (199)
T d2omxa2         118 ITDID-PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLT  194 (199)
T ss_dssp             CCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccc-ccchhhhhHHhhhhhhh-hcccccccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCccccCCC
Confidence            77654 37889999999999986 7777788899999999999999988864 889999999998765    12344555


Q ss_pred             hcccc
Q 041519          289 DRLDT  293 (521)
Q Consensus       289 ~~L~~  293 (521)
                       +|++
T Consensus       195 -~L~~  198 (199)
T d2omxa2         195 -NLES  198 (199)
T ss_dssp             -TCSE
T ss_pred             -CCCc
Confidence             5544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=3.9e-12  Score=115.74  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             cCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519          432 TLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK  500 (521)
Q Consensus       432 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~  500 (521)
                      .+++|++|+++++ +++.++.   ...+++|++|++++| +++++|. +++        +++|+.|+++
T Consensus       171 ~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~Ls~N-~lt~i~~-l~~--------l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-LAN--------TSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTT--------CTTCCEEEEE
T ss_pred             ccccceecccCCC-ccCCChh---hcCCCCCCEEECcCC-cCCCCcc-ccc--------CCCCCEEEee
Confidence            3566666666654 4554432   234566666666666 4666653 333        3336666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.6e-12  Score=111.48  Aligned_cols=125  Identities=16%  Similarity=0.207  Sum_probs=97.9

Q ss_pred             cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccc-cCCccccee
Q 041519          151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV-SDLTNLRSL  229 (521)
Q Consensus       151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L  229 (521)
                      ..++|.|++++|.++.++. ++..+++|++|++++|. +..++.  |..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus        17 ~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~-i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCCccCc-cccccccCCEEECCCCC-CCccCC--cccCcchhhhhcccccccCCCccccccccccccc
Confidence            3578999999999998874 44578899999999998 777754  588999999999999999887654 478899999


Q ss_pred             ecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCc----cccCCCCCcccccccc
Q 041519          230 LLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPE----GMEMLENLSHLSLFMA  280 (521)
Q Consensus       230 ~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~  280 (521)
                      ++++|. +..++   .+..+++|++|++++|.+...|.    .+..+++|+.|+...+
T Consensus        93 ~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i  149 (162)
T d1a9na_          93 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  149 (162)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             eecccc-ccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCC
Confidence            999986 77665   46788999999999998877764    2555666666655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=3.5e-12  Score=103.96  Aligned_cols=98  Identities=23%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             cEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCc
Q 041519          179 STLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTW  258 (521)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~  258 (521)
                      |+|++++|+ ++.++.  ++.+++|++|++++|.++.+|.+++.+++|++|++++|. ++.+|+++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~-l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCC-CCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCccccccccCeEECCCCc
Confidence            678888887 777775  478888888998888888888888888888899888875 8888888888888999888888


Q ss_pred             CcccCc--cccCCCCCcccccccc
Q 041519          259 IEEVPE--GMEMLENLSHLSLFMA  280 (521)
Q Consensus       259 l~~lp~--~i~~l~~L~~L~~~~~  280 (521)
                      ++.+|.  .++.+++|++|++.+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCC
Confidence            887763  4677788888877643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=1.1e-11  Score=109.69  Aligned_cols=118  Identities=25%  Similarity=0.342  Sum_probs=57.4

Q ss_pred             EEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCC-CCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeeccc
Q 041519          156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQ-RIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRW  233 (521)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~  233 (521)
                      .++.++++++.+|.+++   +++++|++++|. +. .++...|+++++|+.|++++|.+..+ +..+..+.+|++|++++
T Consensus        12 ~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcCccCCCCC---CCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34444455555554443   345555555554 32 23333445555555555555554433 23444455555555555


Q ss_pred             CCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519          234 CGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF  278 (521)
Q Consensus       234 ~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~  278 (521)
                      |. +..+|  .+.++.+|++|++++|.++.+|.+ +..+.+|++|++.
T Consensus        88 N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          88 NK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             cc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            43 44444  345555555555555555554433 3445555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.1e-11  Score=109.90  Aligned_cols=129  Identities=16%  Similarity=0.260  Sum_probs=97.6

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC-C
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-T  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~  211 (521)
                      .+...+..+..+|...  .+++++|++++|.++.+|...+.++++|++|++++|.....++...|.+++.++++.+.. +
T Consensus        12 ~i~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCSSCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCCCcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            4555666777888643  358999999999999999988889999999999999855556666678999999999865 4


Q ss_pred             CCCcc-CccccCCcccceeecccCCCCCccCC---ccCCCCCCEEEeeCCcCcccCc
Q 041519          212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGTWIEEVPE  264 (521)
Q Consensus       212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~l~~lp~  264 (521)
                      .+... +..+..+++|+++++++|. +...+.   +..+..+..+...++.+..++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             cccccccccccccccccccccchhh-hcccccccccccccccccccccccccccccc
Confidence            56644 5667899999999999975 776663   3344555555555556666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=9.8e-12  Score=109.89  Aligned_cols=125  Identities=21%  Similarity=0.201  Sum_probs=107.4

Q ss_pred             EEEecCcccccCCCcccccCCccEEEeecCCCCC-CCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519          133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEE-IPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT  211 (521)
Q Consensus       133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~  211 (521)
                      .+..++.+++.+|...  .+++++|++++|.++. ++...|..+++|+.|++++|. +..++...|..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccccccccccccceeeeccc
Confidence            4556777888888754  4689999999999975 667777789999999999998 77777777799999999999999


Q ss_pred             CCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc
Q 041519          212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~  261 (521)
                      .++.+|. .|.++.+|++|+|++|. +..+|  .+..+.+|++|++++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccccc
Confidence            9998864 57899999999999986 88887  58899999999999996653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.4e-11  Score=110.40  Aligned_cols=118  Identities=20%  Similarity=0.267  Sum_probs=85.6

Q ss_pred             ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCccccee
Q 041519          150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSL  229 (521)
Q Consensus       150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  229 (521)
                      .+.+++.|++.++.++.++ .+ ..+++|++|++++|. +..+++  +..+++|+++++++|.++.++ .+..+++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~ls~n~-i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcch-hH-hcCCCCcEeecCCce-eecccc--ccccccccccccccccccccc-ccccccccccc
Confidence            3567888889888888874 44 378889999998887 666665  578888899988888887765 37788888888


Q ss_pred             ecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCccc
Q 041519          230 LLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHL  275 (521)
Q Consensus       230 ~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  275 (521)
                      ++++|. ...++.+.....+..+.++++.+...+. +..+.+|++|
T Consensus       113 ~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L  156 (227)
T d1h6ua2         113 DLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL  156 (227)
T ss_dssp             ECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             cccccc-ccccchhccccchhhhhchhhhhchhhh-hccccccccc
Confidence            888865 5555556677888888887776654432 3334444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.1e-12  Score=118.07  Aligned_cols=87  Identities=16%  Similarity=0.086  Sum_probs=65.6

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCCccC---CccCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKLLAL  249 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L  249 (521)
                      ...+|++|+++++.........++..+++|++|+++++.+. ..+..++.+++|++|++++|..++.-.   -...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45688999998886333334456788999999999999877 556778888899999999987776432   24567899


Q ss_pred             CEEEeeCC-cCc
Q 041519          250 QYLDLEGT-WIE  260 (521)
Q Consensus       250 ~~L~l~~~-~l~  260 (521)
                      ++|++++| .+.
T Consensus       124 ~~L~ls~c~~~~  135 (284)
T d2astb2         124 DELNLSWCFDFT  135 (284)
T ss_dssp             CEEECCCCTTCC
T ss_pred             cccccccccccc
Confidence            99999888 443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2e-11  Score=104.52  Aligned_cols=118  Identities=16%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-C-ccCCCCCCE
Q 041519          174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQY  251 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~  251 (521)
                      ++.++|.|++++|+ ++.++. ++..+++|++|++++|.++.++. +..+++|++|++++|. +..+| . +..+++|++
T Consensus        16 n~~~lr~L~L~~n~-I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCC-CCccCc-cccccccCCEEECCCCCCCccCC-cccCcchhhhhccccc-ccCCCcccccccccccc
Confidence            66789999999999 888875 45889999999999999998864 8999999999999986 88888 5 567999999


Q ss_pred             EEeeCCcCcccCc--cccCCCCCcccccccch---------HHHHhhHhcccceEE
Q 041519          252 LDLEGTWIEEVPE--GMEMLENLSHLSLFMAA---------EEAARLSDRLDTFVG  296 (521)
Q Consensus       252 L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~~---------~~i~~L~~~L~~L~~  296 (521)
                      |++++|.++.++.  .+..+++|++|++.+++         ..+..++ +|+.|+.
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp-~L~~LD~  146 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDF  146 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETT
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCC-CcCeeCC
Confidence            9999999988764  46778888888877651         2366677 7777754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.16  E-value=2.3e-12  Score=120.70  Aligned_cols=74  Identities=20%  Similarity=0.226  Sum_probs=63.5

Q ss_pred             CChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHHH
Q 041519            6 VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCF   85 (521)
Q Consensus         6 ~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cf   85 (521)
                      .++..++++++||++|+|+|||++++|+.|+.| +.++|....+.|....      ..++.+++++||++|| +++|+||
T Consensus       203 ~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~~~~------~~~v~~il~~sY~~L~-~~lk~c~  274 (277)
T d2a5yb3         203 VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESRG------LVGVECITPYSYKSLA-MALQRCV  274 (277)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHHC------SSTTCCCSSSSSSSHH-HHHHHHH
T ss_pred             CchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhcCc------HHHHHHHHHHHHhccc-HHHHHHH
Confidence            455678999999999999999999999999984 7899999988885432      3578999999999999 8999999


Q ss_pred             HH
Q 041519           86 LY   87 (521)
Q Consensus        86 l~   87 (521)
                      -+
T Consensus       275 ~~  276 (277)
T d2a5yb3         275 EV  276 (277)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.2e-11  Score=112.03  Aligned_cols=61  Identities=26%  Similarity=0.297  Sum_probs=39.3

Q ss_pred             CCCCCcEEEccCCCCC--ccCccccCCcccceeecccCCCCC-ccC-CccCCCCCCEEEeeCC-cCc
Q 041519          199 HMHGLKVLNLCHTSIE--VLPNSVSDLTNLRSLLLRWCGILK-RVP-SLAKLLALQYLDLEGT-WIE  260 (521)
Q Consensus       199 ~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~-~lp-~~~~l~~L~~L~l~~~-~l~  260 (521)
                      ....|++|+++++.+.  .++..+..+++|++|++++|. +. ..+ .++++++|++|++++| .++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCcccccccccc
Confidence            4556777777777655  244445667777777777775 33 333 5667777777777776 444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=5.1e-12  Score=112.15  Aligned_cols=107  Identities=25%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519          148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR  227 (521)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~  227 (521)
                      ...++++++|++++|.++.++. + ..+++|++|++++|. +..++... ..+++|++|++++|.++.++. +..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~-l-~~l~~L~~L~Ls~N~-i~~i~~~~-~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISS-L-SGMENLRILSLGRNL-IKKIENLD-AVADTLEELWISYNQIASLSG-IEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCC-H-HHHTTCCEEECCEEE-ECSCSSHH-HHHHHCCEEECSEEECCCHHH-HHHHHHSS
T ss_pred             HhcccccceeECcccCCCCccc-c-cCCccccChhhcccc-cccccccc-ccccccccccccccccccccc-cccccccc
Confidence            3344555555555555555532 2 245555555555554 44444322 334455555555555554432 44555555


Q ss_pred             eeecccCCCCCccC---CccCCCCCCEEEeeCCcCc
Q 041519          228 SLLLRWCGILKRVP---SLAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       228 ~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~  260 (521)
                      +|++++|. +..++   .+..+++|+.|++++|.+.
T Consensus       119 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccch-hccccccccccCCCccceeecCCCccc
Confidence            55555543 44443   2455555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-09  Score=91.01  Aligned_cols=104  Identities=17%  Similarity=0.224  Sum_probs=83.0

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecc
Q 041519          154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLR  232 (521)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~  232 (521)
                      ...+...++.+..+|..+. .+++|+.|+++++..++.++...|.++++|+.|++++|.++.+ |..|..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~-~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccCccccc-CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3456777777777777764 7888999999877668888877778899999999999999877 4567889999999999


Q ss_pred             cCCCCCccC-CccCCCCCCEEEeeCCcC
Q 041519          233 WCGILKRVP-SLAKLLALQYLDLEGTWI  259 (521)
Q Consensus       233 ~~~~l~~lp-~~~~l~~L~~L~l~~~~l  259 (521)
                      +|. ++.+| ++....+|++|++++|.+
T Consensus        89 ~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCC-CcccChhhhccccccccccCCCcc
Confidence            876 88888 655556799999988855

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.94  E-value=5.8e-12  Score=111.75  Aligned_cols=137  Identities=23%  Similarity=0.335  Sum_probs=109.6

Q ss_pred             ccEEEeecC--CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519          154 LERVSLMEN--DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL  231 (521)
Q Consensus       154 l~~L~l~~~--~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  231 (521)
                      .+.+.+.+.  .++.++..+. .+++|+.|++++|. +..++.  ++.+++|++|++++|.++.+|.....+.+|++|++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~-~L~~L~~L~Ls~n~-I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNN-IEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHH-HTTTCCEEECSEEE-ESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchhhhhhHHh-cccccceeECcccC-CCCccc--ccCCccccChhhccccccccccccccccccccccc
Confidence            444555443  3445555554 78999999999998 888875  58999999999999999988876667788999999


Q ss_pred             ccCCCCCccCCccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccch----------------HHHHhhHhcccc
Q 041519          232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMAA----------------EEAARLSDRLDT  293 (521)
Q Consensus       232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~~----------------~~i~~L~~~L~~  293 (521)
                      ++|. +..++.+..+.+|++|++++|.++.++.  .++.+++|++|++.+.+                .-+..++ +|+.
T Consensus       101 ~~N~-i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp-~L~~  178 (198)
T d1m9la_         101 SYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKK  178 (198)
T ss_dssp             SEEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCS-SCCE
T ss_pred             cccc-ccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCC-CcCE
Confidence            9985 8888778889999999999999988763  57889999999987651                1266788 8888


Q ss_pred             eEE
Q 041519          294 FVG  296 (521)
Q Consensus       294 L~~  296 (521)
                      |+.
T Consensus       179 LD~  181 (198)
T d1m9la_         179 LDG  181 (198)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.3e-09  Score=88.95  Aligned_cols=100  Identities=17%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             EecCcccccCCCcccccCCccEEEeecC-CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519          135 VTAGLRLLKFPGEQEWEENLERVSLMEN-DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI  213 (521)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~-~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l  213 (521)
                      ...+......|......++++.|++.++ .++.++...|..+++|+.|++++|+ +..+++..|..+++|++|+|++|.+
T Consensus        14 ~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCCC
Confidence            3345555666777777789999999876 5999998888899999999999998 9999888889999999999999999


Q ss_pred             CccCccccCCcccceeecccCC
Q 041519          214 EVLPNSVSDLTNLRSLLLRWCG  235 (521)
Q Consensus       214 ~~lp~~i~~L~~L~~L~l~~~~  235 (521)
                      +.+|..+....+|++|++++|.
T Consensus        93 ~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          93 ESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSC
T ss_pred             cccChhhhccccccccccCCCc
Confidence            9999887777789999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.2e-07  Score=90.11  Aligned_cols=106  Identities=16%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CccEEEeecCCCCCCC-CCcCCCCCCccEEEcccCcCCCCCc----hhHhhCCCCCcEEEccCCCCCc-----cCcccc-
Q 041519          153 NLERVSLMENDFEEIP-SNMSPHCEILSTLLLQHNKYLQRIP----ECFFVHMHGLKVLNLCHTSIEV-----LPNSVS-  221 (521)
Q Consensus       153 ~l~~L~l~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~-  221 (521)
                      +++.|+++++++.... ..+.+.++++++|++++|. ++...    ...+..+++|++|+|++|.++.     +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            6889999999987521 1233478999999999997 55322    1224789999999999998852     233332 


Q ss_pred             CCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCcCc
Q 041519          222 DLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTWIE  260 (521)
Q Consensus       222 ~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~  260 (521)
                      ...+|++|++++|. +..     ++ .+..+.+|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            23479999999986 654     44 5778999999999999765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.53  E-value=1.2e-05  Score=76.69  Aligned_cols=84  Identities=13%  Similarity=0.101  Sum_probs=47.0

Q ss_pred             CCCCccEEEcccCcCCCCCch----hHhhCCCCCcEEEccCCCCCc-----------cCccccCCcccceeecccCCCCC
Q 041519          174 HCEILSTLLLQHNKYLQRIPE----CFFVHMHGLKVLNLCHTSIEV-----------LPNSVSDLTNLRSLLLRWCGILK  238 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~~-----------lp~~i~~L~~L~~L~l~~~~~l~  238 (521)
                      +...++.|++++|. +..-..    ..+...++|+.++++++....           +...+...++|+.|++++|. +.
T Consensus        29 ~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~  106 (344)
T d2ca6a1          29 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG  106 (344)
T ss_dssp             HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred             hCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-cc
Confidence            45677788887775 322111    113566777788777664331           12233445667777777664 33


Q ss_pred             c-----cC-CccCCCCCCEEEeeCCcC
Q 041519          239 R-----VP-SLAKLLALQYLDLEGTWI  259 (521)
Q Consensus       239 ~-----lp-~~~~l~~L~~L~l~~~~l  259 (521)
                      .     +. .+...++|++|++++|.+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccchhhhhcccccchheecccccc
Confidence            2     22 234556677777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=2.4e-05  Score=65.66  Aligned_cols=85  Identities=25%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             hhHhhCCCCCcEEEccCCCCCccC---ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc----
Q 041519          194 ECFFVHMHGLKVLNLCHTSIEVLP---NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE----  264 (521)
Q Consensus       194 ~~~~~~l~~L~~L~L~~~~l~~lp---~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~----  264 (521)
                      ..++..+++|++|++++|.++.++   ..+..+++|++|++++|. +..++  ...+..+|+.|++++|.+.....    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            344567889999999999887553   445678899999999976 88776  33345578889999987654322    


Q ss_pred             ----cccCCCCCccccccc
Q 041519          265 ----GMEMLENLSHLSLFM  279 (521)
Q Consensus       265 ----~i~~l~~L~~L~~~~  279 (521)
                          -+..+++|+.|+...
T Consensus       137 y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         137 YISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             HHHHHHTTSTTCCEETTEE
T ss_pred             HHHHHHHHCCCCCEECcCC
Confidence                134456666665443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.25  E-value=6e-05  Score=71.52  Aligned_cols=127  Identities=19%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCCCch-------------hHhhCCCCCcEEEccCCCCC
Q 041519          152 ENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQRIPE-------------CFFVHMHGLKVLNLCHTSIE  214 (521)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~~l~~L~~L~L~~~~l~  214 (521)
                      ++++.|++.+|.+......    ....+++|+.|++++|. +.....             ......+.|+.++++++.+.
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccccccccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccccccc
Confidence            3566666666655432110    11234566666666654 221000             00134556666666666543


Q ss_pred             -----ccCccccCCcccceeecccCCCCCc------cC-CccCCCCCCEEEeeCCcCcc-----cCccccCCCCCccccc
Q 041519          215 -----VLPNSVSDLTNLRSLLLRWCGILKR------VP-SLAKLLALQYLDLEGTWIEE-----VPEGMEMLENLSHLSL  277 (521)
Q Consensus       215 -----~lp~~i~~L~~L~~L~l~~~~~l~~------lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~~  277 (521)
                           .+...+....+|++|++++|. +..      +. .+...++|++|++++|.+..     +...+...++|++|++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             ccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence                 223334455566666666654 332      22 35556666666666665431     3333445555666555


Q ss_pred             ccc
Q 041519          278 FMA  280 (521)
Q Consensus       278 ~~~  280 (521)
                      ..+
T Consensus       251 s~n  253 (344)
T d2ca6a1         251 NDC  253 (344)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=6.4e-05  Score=62.90  Aligned_cols=78  Identities=23%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             CCCCccEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccCCCCCccC-C-------
Q 041519          174 HCEILSTLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP-S-------  242 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~-------  242 (521)
                      .++.|++|++++|+ ++.+++  ..+..+++|++|++++|.++.++. ......+|+.|++++|. +.... .       
T Consensus        63 ~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC-cCcCcccchhHHHH
Confidence            56778888888887 666542  334678888888888888876654 12234467888888876 33221 1       


Q ss_pred             -ccCCCCCCEEE
Q 041519          243 -LAKLLALQYLD  253 (521)
Q Consensus       243 -~~~l~~L~~L~  253 (521)
                       +..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence             45677888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=6.7e-05  Score=73.61  Aligned_cols=88  Identities=20%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             cccCCccEEEeecCCCCC-----CCCCcCCCCCCccEEEcccCcCCCCCc-----hhHhhCCCCCcEEEccCCCCCc---
Q 041519          149 EWEENLERVSLMENDFEE-----IPSNMSPHCEILSTLLLQHNKYLQRIP-----ECFFVHMHGLKVLNLCHTSIEV---  215 (521)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~l~~L~~L~L~~~~l~~---  215 (521)
                      ..+++++.|.+++|.++.     +...+ ..+++|+.|++++|. ++...     ..+......|+.|++++|.++.   
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            345788888888887762     22222 367888889888886 53221     1111123478888988888763   


Q ss_pred             --cCccccCCcccceeecccCCCCCc
Q 041519          216 --LPNSVSDLTNLRSLLLRWCGILKR  239 (521)
Q Consensus       216 --lp~~i~~L~~L~~L~l~~~~~l~~  239 (521)
                        ++..+..+++|++|++++|. +..
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~-i~~  126 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNL-LGD  126 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB-CHH
T ss_pred             ccccchhhcccccccccccccc-chh
Confidence              45567778888888888875 443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.87  E-value=0.0084  Score=49.62  Aligned_cols=86  Identities=14%  Similarity=0.058  Sum_probs=48.5

Q ss_pred             CCCCccEEEcccCcCCCC-----CchhHhhCCCCCcEEEccCCCCC-----ccCccccCCcccceeecccCCCCCcc---
Q 041519          174 HCEILSTLLLQHNKYLQR-----IPECFFVHMHGLKVLNLCHTSIE-----VLPNSVSDLTNLRSLLLRWCGILKRV---  240 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~l---  240 (521)
                      +.+.|+.|++++++.++.     +.. .+...++|+.|++++|.+.     .+...+..-+.|+.|++++|. +..-   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHH
Confidence            346677777765432322     111 1355667777777777665     122333445667777777764 4431   


Q ss_pred             --C-CccCCCCCCEEEeeCCcCcc
Q 041519          241 --P-SLAKLLALQYLDLEGTWIEE  261 (521)
Q Consensus       241 --p-~~~~l~~L~~L~l~~~~l~~  261 (521)
                        - .+..-..|++|+++++.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCC
Confidence              1 35555678888887765443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.04  E-value=0.026  Score=46.48  Aligned_cols=103  Identities=10%  Similarity=0.042  Sum_probs=67.8

Q ss_pred             CCccEEEeecC-CCCC-----CCCCcCCCCCCccEEEcccCcCCCCC----chhHhhCCCCCcEEEccCCCCCc-----c
Q 041519          152 ENLERVSLMEN-DFEE-----IPSNMSPHCEILSTLLLQHNKYLQRI----PECFFVHMHGLKVLNLCHTSIEV-----L  216 (521)
Q Consensus       152 ~~l~~L~l~~~-~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~-----l  216 (521)
                      ++++.|++.++ .+..     +-..+ ...+.|+.|++++|. +..-    -...+...+.|+.|++++|.+..     +
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L-~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHH-hhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            57999999864 3431     11112 366889999999987 4321    11234678899999999998772     3


Q ss_pred             CccccCCcccceeecccCCCCCcc--------C-CccCCCCCCEEEeeCC
Q 041519          217 PNSVSDLTNLRSLLLRWCGILKRV--------P-SLAKLLALQYLDLEGT  257 (521)
Q Consensus       217 p~~i~~L~~L~~L~l~~~~~l~~l--------p-~~~~l~~L~~L~l~~~  257 (521)
                      -..+..-+.|++|++++|. ...+        . .+..-+.|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            4456677889999999864 3222        2 2444567777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.76  E-value=0.053  Score=44.36  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=44.8

Q ss_pred             CCCCccEEEcccCcCCCCCch----hHhhCCCCCcEEEccCCCCC-----ccCccccCCcccceeecccCCCCCc-----
Q 041519          174 HCEILSTLLLQHNKYLQRIPE----CFFVHMHGLKVLNLCHTSIE-----VLPNSVSDLTNLRSLLLRWCGILKR-----  239 (521)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----  239 (521)
                      +.+.|+.|.++++..++.-.-    ..+...++|+.|++++|.+.     .+-..+.....++.+++++|. +..     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-ccchhHHH
Confidence            457777888776432322110    11246677888888877665     222334455667777777654 321     


Q ss_pred             cC-CccCCCCCCEEEeeC
Q 041519          240 VP-SLAKLLALQYLDLEG  256 (521)
Q Consensus       240 lp-~~~~l~~L~~L~l~~  256 (521)
                      +- .+...++|+.+++..
T Consensus        94 l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHhCccccEEeecc
Confidence            22 345556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.22  E-value=0.044  Score=44.84  Aligned_cols=16  Identities=31%  Similarity=0.179  Sum_probs=8.2

Q ss_pred             hCCCCCcEEEccCCCC
Q 041519          198 VHMHGLKVLNLCHTSI  213 (521)
Q Consensus       198 ~~l~~L~~L~L~~~~l  213 (521)
                      ...+.++.++++++.+
T Consensus        71 ~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          71 KVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHCSSCCEEECCSSCC
T ss_pred             hhcccchhhhhccccc
Confidence            3445555555555543