Citrus Sinensis ID: 041521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MEITRFPFLNQEEDYSHLLDLLPEMESRSTFINNNNSSNNNNNNNNNLKKRRRSDDVLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFLH
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccEEEEEccEEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEEcccccccccHHHHHccHHHHHHHccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccEEEEEccEEEEEcccHHHHHHcccccEEccccccEEEEEEEEEccccEEEEEEEcccccccHHHHHHHcHHHHHHccccccccEEEEcccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
meitrfpflnqeeDYSHLLDllpemesrstfinnnnssnnnnnnnnnlkkrrrsddvlnksaAWSDILTSLILLDEEEKREQQQYSIHshqdkllvddnHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASASasasasedasadnpttaggsaqhrrLWVKDrskdwwdernhpdfpeeefWRDFRMSKATFEMICEELESTVMKKNtmlrdaipVRQRVAVCVWRlatgeplrVVSKRFGLGISTCHKLVLEVCSAIKTVlmpkflqwpdelKMKQIKEEFqgisgipnvggsmytthipiiapkisvASYFNKrhternqktsySITVQGVvdtkgvftdvcigwpgsmpddqvLERSALFQRAdrgllkdvwivgnsgyplmdwvmvpytqknltwTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKrtevklqdlpvvLGACCVLHNICEmrnevmdpqlkfdlfddemipdnsvrSMASAQARDHIAHNLlhhglagtsflh
Flexible Loop (DISEMBL)
meitrfpflnqeeDYSHLLDLLPEMESRSTFinnnnssnnnnnnnnnlkkRRRSDDVLNKSAAWSDILTSLILLDEEEKREQQQYsihshqdkllvDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASAsasasasedasadnpttaggsaqhrrlwvkdrskdwwdernhpdfpeeefwRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRlatgeplrvvSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHternqktsysitvqgvvdTKGVFTDVCIGWPGSMPDDQVLERSALFQradrgllkdvWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKrtevklqdlpvVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGlagtsflh
Low Complexity Region (SEG)
MEITRFPFLNQEEDYSHLLDLLPEMESRSTFInnnnssnnnnnnnnnLKKRRRSDDVLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRsrrtasavatvaasasasasasedasadNPTTAGGSAQHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFLH
Disordered region (IsUnstruct)
*************************************************************AAWSDILTSLILL***********************************YFHQLQDHYTDLDV**************************************************LWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDE******************IAHNLLHHG********
Disordered Region (DISOPRED)
****RFPFLNQEEDYSHLLDLLPEM****************************************DILTSLILLD**********************DNHKRKEQAMNDYFHQL************************************************************WVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNT**RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMI**********AQARDHIAHNLLHHGL*****L*
Disordered Region (DISEMBL)
MEITRFPFLNQEEDYSHLLDLLPEMESRSTFINNNNSSNNNNNNNNNLKKRRRSDDVLNKSAAWSDILTSLILLDEE***********SHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNK*****************************************RLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFLH
Disordered Region (DISPRO)
****RFPFLNQEEDYSHLLDLLPEMESR*******************************KSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKR*************************************QHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDD**IPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEITRFPFLNQEEDYSHLLDLLPEMESRSTFINNNNSSNNNNNNNNNLKKRRRSDDVLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	524	2.2.26 [Sep-21-2011]
Q96MB7	349	Putative nuclease HARBI1	yes	no	0.343	0.515	0.324	3e-21
Q17QR8	349	Putative nuclease HARBI1	yes	no	0.343	0.515	0.324	9e-21
Q8BR93	349	Putative nuclease HARBI1	yes	no	0.343	0.515	0.319	1e-20
B0BN95	349	Putative nuclease HARBI1	yes	no	0.343	0.515	0.314	3e-20
Q6AZB8	349	Putative nuclease HARBI1	no	no	0.488	0.733	0.277	5e-19
Q5U538	347	Putative nuclease HARBI1	N/A	no	0.341	0.515	0.287	2e-11

>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
           +F+++P DE  ++ +K+EF G++G+P V G +   H+ I AP     SY N+       K
Sbjct: 117 QFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNR-------K 169

Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
             +S+    V D +G    V   WPGS+ D  VL++S+L  + + G+ KD W++G+S + 
Sbjct: 170 GLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFF 229

Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
           L  W+M P      T  ++ +N       +V +  F  L  R+ CL   ++  LQ  P  
Sbjct: 230 LRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEK 287

Query: 459 ---VLGACCVLHNI 469
              ++ ACCVLHNI
Sbjct: 288 SSHIILACCVLHNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 14/194 (7%)

Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
           +F+ +P DE  ++ +K+EF G++GIP V G +   H+ I AP     SY N+       K
Sbjct: 117 QFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNR-------K 169

Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
             +S+    V D +G    V   WPGS+ D  VL++S+L  + + G+ K+ W++G+S + 
Sbjct: 170 GLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFF 229

Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
           L  W+M P      T  ++ +N       +V +  F  L  R+ CL   ++  LQ  P  
Sbjct: 230 LRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEK 287

Query: 459 ---VLGACCVLHNI 469
              ++ ACCVLHNI
Sbjct: 288 SSHIILACCVLHNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 14/194 (7%)

Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
           +F+ +P DE  ++ +K+EF G++G+P V G     H+ I AP     SY N+       K
Sbjct: 117 QFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYVNR-------K 169

Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
             +S+    V D +G    V   WPGS+ D  VL+RS+L  + + G+ KD W++G+S + 
Sbjct: 170 GLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFF 229

Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
           L  W++ P      T  ++ +N       +V +     L  R+ CL   ++  LQ  P  
Sbjct: 230 LRSWLLTPLPIPE-TAAEYRYNRAHSATHSVIERTLQTLCCRFRCLDG-SKGALQYSPEK 287

Query: 459 ---VLGACCVLHNI 469
              ++ ACCVLHNI
Sbjct: 288 CSHIILACCVLHNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)

Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
           +F+ +P DE  ++ +K+EF G++G+P V G++   H+ I AP     SY N+       K
Sbjct: 117 QFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNR-------K 169

Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
             +S+    V D +G    V   WPGS+ D  VL++S+L  + + G+ KD W++G+S + 
Sbjct: 170 GLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFF 229

Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
           L  W++ P      T  ++ +N       +V +     L  R+ CL   ++  LQ  P  
Sbjct: 230 LHTWLLTPLHIPE-TPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDG-SKGALQYSPEK 287

Query: 459 ---VLGACCVLHNI 469
              ++ ACCVLHNI
Sbjct: 288 SSHIILACCVLHNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 21/277 (7%)

Query: 201 FRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGI 260
           F   +     + E L+ +++++    R   P  Q +A   +   +G     +    G+  
Sbjct: 39  FGFPREFIYYLVELLKDSLLRRTQRSRAISPDVQILAALGF-YTSGSFQSKMGDAIGISQ 97

Query: 261 STCHKLVLEVCSAIKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPII 319
           ++  + V  V  A+     P+F+ +  DE   +Q K+EF  I+GIPNV G +   HI I 
Sbjct: 98  ASMSRCVSNVTKAL-IEKAPEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIK 156

Query: 320 APKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERS--- 376
           AP    +SY NK       K  +SI  Q V D +G+       WPGS+ D  V ++S   
Sbjct: 157 APNADDSSYVNK-------KGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVA 209

Query: 377 ALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFA 436
            LF+  +     + W++G++ YPL  W+M P  Q   +   + +N        +    F 
Sbjct: 210 KLFEEQEND--DEGWLLGDNRYPLKKWLMTP-VQSPESPADYRYNLAHTTTHEIVDRTFR 266

Query: 437 RLKGRWACLQKRTEVKLQDLPV----VLGACCVLHNI 469
            ++ R+ CL    +  LQ  P     ++ ACCVLHNI
Sbjct: 267 AIQTRFRCLDG-AKGYLQYSPEKCSHIIQACCVLHNI 302

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 16/195 (8%)

Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
           +F+ +P DE  ++ +K+EF  ++G+P V G +  T + I AP     SY N R       
Sbjct: 117 QFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSEDLSYVNSRGL----- 171

Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
             +S+    V D +G          GSM D+ VL +S L    +  + K  W++ ++ + 
Sbjct: 172 --HSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFI 229

Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLP-- 457
           L  W+M P  Q   + + + +N       +V +     L+ R+ CL   +   LQ  P  
Sbjct: 230 LRPWLMTP-VQIPESPSDYRYNMAHTATHSVMERTQRSLRLRFRCLDG-SRATLQYSPEK 287

Query: 458 ---VVLGACCVLHNI 469
              +VL ACC+LHNI
Sbjct: 288 SAQIVL-ACCILHNI 301


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,223,542
Number of Sequences: 539616
Number of extensions: 8248974
Number of successful extensions: 124127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 42295
Number of HSP's gapped (non-prelim): 39691
length of query: 524
length of database: 191,569,459
effective HSP length: 122
effective length of query: 402
effective length of database: 125,736,307
effective search space: 50545995414
effective search space used: 50545995414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
255546077	541	conserved hypothetical protein [Ricinus	0.996	0.964	0.688	0.0
224114577	456	predicted protein [Populus trichocarpa]	0.868	0.997	0.755	0.0
224085922	453	predicted protein [Populus trichocarpa]	0.862	0.997	0.748	0.0
225429570	484	PREDICTED: uncharacterized protein LOC10	0.906	0.981	0.677	0.0
224092160	507	predicted protein [Populus trichocarpa]	0.904	0.934	0.660	0.0
356532740	527	PREDICTED: putative nuclease HARBI1-like	0.990	0.984	0.638	0.0
356552466	534	PREDICTED: uncharacterized protein LOC10	0.862	0.846	0.687	0.0
343887274	515	hypothetical protein [Citrus unshiu]	0.868	0.883	0.691	0.0
357437265	1056	hypothetical protein MTR_1g015070 [Medic	0.868	0.430	0.683	0.0
356563940	536	PREDICTED: putative nuclease HARBI1-like	0.866	0.847	0.687	0.0

>gi|255546077|ref|XP_002514098.1| conserved hypothetical protein [Ricinus communis] gi|223546554|gb|EEF48052.1| conserved hypothetical protein [Ricinus communis]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/542 (68%), Positives = 438/542 (80%), Gaps = 20/542 (3%)

Query: 1   MEITRFPFLNQEEDYSHLLDLLPEMESRSTFINNNNSSNNNNNN--NNNLKKRRR----- 53
           MEI+ FP LNQ+ D+SH   LL +M+S +   NN N S+  ++   NN++KKR+R     
Sbjct: 1   MEISSFPLLNQD-DFSHFYSLLQDMDSSNADTNNTNGSSAASSFGLNNDIKKRKRKSDNE 59

Query: 54  -----------SDDVLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKR 102
                      ++D L KS    +IL SL++LDEEEK+EQQQ+ I S QDK L D N KR
Sbjct: 60  DNDPFLLQLPNTEDDLKKSTTMRNILASLLMLDEEEKQEQQQWLIDSQQDKSLFDSNSKR 119

Query: 103 KEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASASASASASE-DASADN 161
           K QAM+ Y   LQ+H+TDL  +D  R  K  R  +++ A  AA A AS + +  D++  N
Sbjct: 120 KIQAMDAYSSHLQNHFTDLHELDHSRIKKARRSASASAAAAAAVAVASNNVASADSAQSN 179

Query: 162 PTTAGGSAQHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMK 221
              A GS QHRRLWVKDRSKDWW++ +HPDFPEEEF + FRMSKATFE IC EL+S V K
Sbjct: 180 GGGASGSGQHRRLWVKDRSKDWWEKCSHPDFPEEEFKKAFRMSKATFETICNELDSAVTK 239

Query: 222 KNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPK 281
           KNTMLRDAIPVRQRVAVC+WRLATGEPLR+VSKRFGLGISTCHKLVLEVCSAI+ VLMP+
Sbjct: 240 KNTMLRDAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCSAIRNVLMPR 299

Query: 282 FLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTS 341
           FLQWPDE K++ IK E++ +SGIPNVGGSMYTTHIPIIAPKISVA+YFNKRHTERNQKTS
Sbjct: 300 FLQWPDEEKLRMIKSEYEAVSGIPNVGGSMYTTHIPIIAPKISVAAYFNKRHTERNQKTS 359

Query: 342 YSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLM 401
           YS+TVQGVVD +GVFTDVCIGWPGSM DDQVLE+SALFQRA+RG LKDVWIVGNSGYPLM
Sbjct: 360 YSMTVQGVVDPRGVFTDVCIGWPGSMTDDQVLEKSALFQRANRGALKDVWIVGNSGYPLM 419

Query: 402 DWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLG 461
           DWV+VPYT +NLTWTQHAFNEKIG++Q V K+AFARLK RW+CLQKRTEVKLQDLPVVLG
Sbjct: 420 DWVLVPYTHQNLTWTQHAFNEKIGEVQRVGKEAFARLKARWSCLQKRTEVKLQDLPVVLG 479

Query: 462 ACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTS 521
           ACCVLHNICEMRNE ++P  ++++FDDEMIP+N +RS+ + QARDHIAHNLLHHGLAGTS
Sbjct: 480 ACCVLHNICEMRNEEIEPGHRYEIFDDEMIPENGLRSVGAIQARDHIAHNLLHHGLAGTS 539

Query: 522 FL 523
           FL
Sbjct: 540 FL 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114577|ref|XP_002332342.1| predicted protein [Populus trichocarpa] gi|222831909|gb|EEE70386.1| predicted protein [Populus trichocarpa]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/459 (75%), Positives = 397/459 (86%), Gaps = 4/459 (0%)

Query: 65  SDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVM 124
           SDILTSLILLDEEEK+  QQ++I S  DK   D NHKRK +AMNDY   LQ H++DLD M
Sbjct: 2   SDILTSLILLDEEEKQGHQQWAIESQHDKAAFDWNHKRKLEAMNDYHSHLQTHFSDLDEM 61

Query: 125 DQLRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWW 184
           D   T KR  R AS     AA+ + + + +  AS++   + GGS Q RRLWVKDRSKDWW
Sbjct: 62  DSSGT-KRHGRCAS---LTAAAVAVAVTETAQASSEQSGSGGGSGQQRRLWVKDRSKDWW 117

Query: 185 DERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLA 244
           ++ +HPDFPEEEF + FRMSKATF+MIC EL+S V KKNTMLRDAIPVRQRVAVC+WRLA
Sbjct: 118 EKCSHPDFPEEEFRKAFRMSKATFDMICVELDSVVTKKNTMLRDAIPVRQRVAVCIWRLA 177

Query: 245 TGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGI 304
           TGEPLR+VSKRFGLGISTCHKLVLEVCSAI+ VLMPKFLQWP+E K+K IK EF+ +SGI
Sbjct: 178 TGEPLRLVSKRFGLGISTCHKLVLEVCSAIRNVLMPKFLQWPNEDKLKMIKGEFESMSGI 237

Query: 305 PNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWP 364
           PNVGGSMYTTH+PIIAPKI+VA+Y+NKRHTERNQKTSYS+TVQGVV  KGVFTDVCIG+P
Sbjct: 238 PNVGGSMYTTHVPIIAPKINVAAYYNKRHTERNQKTSYSMTVQGVVSPKGVFTDVCIGYP 297

Query: 365 GSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKI 424
           GSMPDD+VLE SALF+RA+RG LK+V IVGNSG+PLMDWV+VPYT +NLTWTQHAFNEKI
Sbjct: 298 GSMPDDRVLEESALFKRANRGALKNVCIVGNSGHPLMDWVLVPYTHQNLTWTQHAFNEKI 357

Query: 425 GDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFD 484
           G+IQ V+K+AFARLKGRW+CLQKRTEVKLQDLPVVLGACCVLHNICEMRNE M P+LKFD
Sbjct: 358 GEIQRVSKEAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICEMRNEEMGPELKFD 417

Query: 485 LFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
           +FDD+MIP+NS+RS  + QARDHIAHNLLHHGLAGTSFL
Sbjct: 418 IFDDDMIPENSLRSAGAIQARDHIAHNLLHHGLAGTSFL 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085922|ref|XP_002307739.1| predicted protein [Populus trichocarpa] gi|222857188|gb|EEE94735.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/457 (74%), Positives = 393/457 (85%), Gaps = 5/457 (1%)

Query: 65  SDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVM 124
           SDIL+SLILLDEEEK+E QQ++I S  DK  +D NHK+K  AMNDY   L+ +++DLD M
Sbjct: 2   SDILSSLILLDEEEKQEYQQWAIESQLDKAALDWNHKQKVVAMNDYRSDLEANFSDLDEM 61

Query: 125 DQLRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWW 184
           D  RT KR+RR AS VAT AA    +  +S          +G   QHRRLWVKDRSKDWW
Sbjct: 62  DHTRT-KRARRAASEVATAAAVTETALPSSGPGG----GGSGQQQQHRRLWVKDRSKDWW 116

Query: 185 DERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLA 244
           D+ NHPDFP+EEF + FRMSKATF++IC EL+S V KKNTMLRDAIPVRQR+AVC+WRLA
Sbjct: 117 DKCNHPDFPDEEFRKAFRMSKATFDLICMELDSAVTKKNTMLRDAIPVRQRIAVCIWRLA 176

Query: 245 TGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGI 304
           TGEPLR+VSKRFGLGISTCHKLVLEVCSAI+ VLMPKFLQWP+E K+K IK EF+ +SGI
Sbjct: 177 TGEPLRLVSKRFGLGISTCHKLVLEVCSAIRNVLMPKFLQWPNEDKLKMIKGEFESMSGI 236

Query: 305 PNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWP 364
           PNVGGSMYTTH+PIIAPKI+VA+Y+NKRHTERNQKTSYS+TVQGVV  KGVFTDVCIG+P
Sbjct: 237 PNVGGSMYTTHVPIIAPKINVAAYYNKRHTERNQKTSYSMTVQGVVSPKGVFTDVCIGYP 296

Query: 365 GSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKI 424
           GSMPDD+VLE SALF+RA+RG LK+V IVGNSG+PLMDWV+VPYT +NLTWTQHAFNEKI
Sbjct: 297 GSMPDDRVLEESALFKRANRGALKNVCIVGNSGHPLMDWVLVPYTHQNLTWTQHAFNEKI 356

Query: 425 GDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFD 484
           G+IQ V+K+AFARLKGRW+CLQKRTEVKLQDLP VLGACCVLHNICEMRNE M P+LKFD
Sbjct: 357 GEIQRVSKEAFARLKGRWSCLQKRTEVKLQDLPAVLGACCVLHNICEMRNEEMGPELKFD 416

Query: 485 LFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTS 521
           LFDD MIP+NS+RS ++ QARDHI+HNLLHHGL GTS
Sbjct: 417 LFDDVMIPENSLRSASAIQARDHISHNLLHHGLGGTS 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429570|ref|XP_002280033.1| PREDICTED: uncharacterized protein LOC100262760 [Vitis vinifera] gi|296081670|emb|CBI20675.3| unnamed protein product [Vitis vinifera]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/490 (67%), Positives = 404/490 (82%), Gaps = 15/490 (3%)

Query: 42  NNNNNNLKKRRRSDD--------VLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDK 93
           N++ +N KKRRR D+           K     +I+TSL+LL+E++KR+Q+++     ++K
Sbjct: 2   NDSTSNRKKRRRKDEGEGELGVVKEGKKRDLKEIITSLLLLEEQQKRDQEEFDRTLEEEK 61

Query: 94  LLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASASASASA 153
           ++ ++NHK+K +AM DY+  LQD+Y +LD MDQ R     R+  ++ +   A+A+ +A A
Sbjct: 62  MVFEENHKKKTRAMMDYYSNLQDYYNELDDMDQAR-----RKRCNSASATTAAAAGAAGA 116

Query: 154 SEDASADNPTTAGGSAQHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICE 213
           +    +D+    G  A  RRLWVKDRSK WWDE N P+FPEEEF + FRMS+ATF+MIC+
Sbjct: 117 ASLEFSDSSVKPGSGA--RRLWVKDRSKAWWDECNKPEFPEEEFRKAFRMSRATFDMICD 174

Query: 214 ELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSA 273
           EL S V K++TMLR AIPVRQRVAVC+WRLATGEPLR+VSK+FGLGISTCHKLVLEVCSA
Sbjct: 175 ELNSVVAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCSA 234

Query: 274 IKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRH 333
           I+TVLMPK+LQWPDE  ++++K+EF+ ISGIPNV GSMYTTHIPIIAPKISVA+YFN+RH
Sbjct: 235 IRTVLMPKYLQWPDEETLRRMKDEFESISGIPNVVGSMYTTHIPIIAPKISVAAYFNRRH 294

Query: 334 TERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIV 393
           TERNQKTSYSITVQGVVD KGVFTDVCIGWPGSMPDDQVLE+SAL+QRA+ GLLK VWIV
Sbjct: 295 TERNQKTSYSITVQGVVDPKGVFTDVCIGWPGSMPDDQVLEKSALYQRANGGLLKGVWIV 354

Query: 394 GNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKL 453
           G SGYPLMDWVMVPYTQ+NLTWTQHAFNEKIG+IQ V+++AFARLK RW CLQKRTEVKL
Sbjct: 355 GGSGYPLMDWVMVPYTQQNLTWTQHAFNEKIGEIQRVSREAFARLKARWCCLQKRTEVKL 414

Query: 454 QDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLL 513
           QDLPVVLGACCVLHNICE++NE MDP+L+ +L DDEMIP+  +RS  S +ARD IAHNLL
Sbjct: 415 QDLPVVLGACCVLHNICELQNEEMDPELRINLIDDEMIPEIPLRSTTSMKARDAIAHNLL 474

Query: 514 HHGLAGTSFL 523
           HHGLAGT+FL
Sbjct: 475 HHGLAGTAFL 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092160|ref|XP_002309488.1| predicted protein [Populus trichocarpa] gi|222855464|gb|EEE93011.1| predicted protein [Populus trichocarpa]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/486 (66%), Positives = 397/486 (81%), Gaps = 12/486 (2%)

Query: 39  NNNNNNNNNLKKRRRSDDVLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDD 98
            N+++ N++ ++  R      K      I+TSLILL+++EK +Q++ S  S+++K+L++ 
Sbjct: 33  GNDSDGNDSFEQDGRE----KKKKNLKGIITSLILLEQQEKSDQEEQSKASNEEKVLLEA 88

Query: 99  NHKRKEQAMNDYFHQLQDHYTDLDVMDQLRTNKRSRRTASAVA-TVAASASASASASEDA 157
           NH ++ + M +Y+ + QD++ ++       T +R R+ + A+A  +A S  ++  A+ + 
Sbjct: 89  NHNKRIKTMVEYYDKFQDYHVEVQ-----ETERRKRKNSRAIAGALAVSTVSNGVAAREG 143

Query: 158 SADNPTTAGGSAQHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELES 217
             D  T  GG  Q RRLWVKDR K+WWD+ N PD+PEEEF + FRMSK+TF+MICEEL S
Sbjct: 144 IKD--TKHGGGGQQRRLWVKDRDKEWWDDCNRPDYPEEEFKKAFRMSKSTFDMICEELNS 201

Query: 218 TVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV 277
            + K++T LR+AIPVRQRVAVC+WRLATGEPLR+VSKRFGLGISTCHKLVLEVCSAI++V
Sbjct: 202 VIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCSAIRSV 261

Query: 278 LMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERN 337
           LMPK+LQWPDE  +++IK EF+ ISGIPN  GSMYTTHIPIIAPKISVA+YFNKRHTERN
Sbjct: 262 LMPKYLQWPDEDGLRKIKNEFESISGIPNAVGSMYTTHIPIIAPKISVAAYFNKRHTERN 321

Query: 338 QKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSG 397
           QKTSYSITVQGVVD KG+FTDVCIGWPGSMPDDQVLE+SALFQRA+ GLLKDVWIVG SG
Sbjct: 322 QKTSYSITVQGVVDPKGIFTDVCIGWPGSMPDDQVLEKSALFQRANGGLLKDVWIVGTSG 381

Query: 398 YPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLP 457
           YPLMDWV+VPY Q+NLTWTQHAFNEKIG+IQ VAKDAFARLKGRW+CLQKRTEVKLQDLP
Sbjct: 382 YPLMDWVLVPYAQQNLTWTQHAFNEKIGEIQLVAKDAFARLKGRWSCLQKRTEVKLQDLP 441

Query: 458 VVLGACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGL 517
           VVLGACCVLHNICEM+NE +DP+L+ +L DDEM+P+ ++RS  S +ARD IAHNLLHH  
Sbjct: 442 VVLGACCVLHNICEMQNEEIDPELRVELVDDEMVPEVALRSATSMKARDAIAHNLLHHCH 501

Query: 518 AGTSFL 523
           AGT FL
Sbjct: 502 AGTRFL 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532740|ref|XP_003534929.1| PREDICTED: putative nuclease HARBI1-like [Glycine max]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/531 (63%), Positives = 405/531 (76%), Gaps = 12/531 (2%)

Query: 1   MEITRFPFLNQEEDYSHLLDLLPEMESRSTFINNNNSS--------NNNNNNNNNLKKRR 52
           MEI++ PF  QE DYSH  +L  + +S ++  NNN+++           +      K   
Sbjct: 1   MEISQIPFFTQE-DYSHFYNLYEDTDSNNSLNNNNSNNKRKRNNRKEEGSGGGAEQKGHN 59

Query: 53  RSDDVLNKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFH 112
            +++  N  +   D+L SLI+LDEEE +E++   +   Q + + + N + + +AMN Y  
Sbjct: 60  GNNNNENSESNLKDLLASLIMLDEEEIQEERNRKVEYEQHRNMYNANFENQTRAMNTYKA 119

Query: 113 QLQDHYTDLDVMDQLRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHR 172
           Q + HY   +  +Q  T K  R  A+A  T +     S S       D+     GS   R
Sbjct: 120 QFEAHYAQSEEFEQTITKKARRAVAAATGTGSVMLYESGSVQVQPRTDSEP---GSTVQR 176

Query: 173 RLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPV 232
           RLWVKDRSKDWW++ +  DFPEEEF R FRMS++TF+MIC+EL++ V KKNTMLRDAIPV
Sbjct: 177 RLWVKDRSKDWWEKISRKDFPEEEFRRWFRMSRSTFDMICDELDAAVTKKNTMLRDAIPV 236

Query: 233 RQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMK 292
           RQRVAVC+WRLATG+PLR+VSKRFGLGISTCHKLVLEVCSAI+TVLMPKFLQWP+E K K
Sbjct: 237 RQRVAVCIWRLATGDPLRLVSKRFGLGISTCHKLVLEVCSAIRTVLMPKFLQWPNEEKTK 296

Query: 293 QIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDT 352
           QIK+EF+ ISGIPNVGG+MYTTH+PIIAPKISV++YFNKRHTERNQKTSYSITVQGVVD+
Sbjct: 297 QIKDEFEKISGIPNVGGAMYTTHVPIIAPKISVSAYFNKRHTERNQKTSYSITVQGVVDS 356

Query: 353 KGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKN 412
           KGVF DVCIGWPGSMPDD+VLE+SALFQRA RG LK VWIVGNSG+PLMDWV+VPYT  N
Sbjct: 357 KGVFNDVCIGWPGSMPDDRVLEKSALFQRASRGNLKGVWIVGNSGHPLMDWVLVPYTHAN 416

Query: 413 LTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEM 472
           LTWTQHAFNEKI +IQ VAK+AFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICEM
Sbjct: 417 LTWTQHAFNEKIEEIQGVAKEAFARLKGRWGCLQKRTEVKLQDLPVVLGACCVLHNICEM 476

Query: 473 RNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
           RNE MD + +F +FDDEM+P+N +RS AS QARDHIAH LLHHG AGT F 
Sbjct: 477 RNEEMDDEWRFQIFDDEMLPENGIRSSASLQARDHIAHYLLHHGRAGTGFF 527

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552466|ref|XP_003544588.1| PREDICTED: uncharacterized protein LOC100804219 [Glycine max]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/457 (68%), Positives = 382/457 (83%), Gaps = 5/457 (1%)

Query: 67  ILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQ 126
           ILTS++LLDE+EK +QQQ +  S ++K  ++ NHK+K +AM  Y+  L ++Y+ ++  ++
Sbjct: 83  ILTSILLLDEQEKLDQQQNNRVSEEEKFSLETNHKKKTKAMLQYYSNLDEYYSHVEESER 142

Query: 127 LRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWWDE 186
           ++  K+SR  A AVA VA                  +  GGS   RRLWVKDRS  WWD 
Sbjct: 143 VK-RKKSRGMARAVAVVACEREGEGGGGSAEGVK--SGVGGS--QRRLWVKDRSGAWWDG 197

Query: 187 RNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATG 246
            N  DFPEEEF + FRM + TF+MIC+EL S ++K++T LR+AIPVRQRVAVC+WRLATG
Sbjct: 198 CNKEDFPEEEFRKAFRMGRETFDMICDELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATG 257

Query: 247 EPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPN 306
           +PLR+VSKRFGLGISTCHKLVLEVC+AIK+VLMPK+L WPDE  ++++K EF+G+SGIPN
Sbjct: 258 DPLRIVSKRFGLGISTCHKLVLEVCTAIKSVLMPKYLNWPDEGSLRRVKSEFEGVSGIPN 317

Query: 307 VGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGS 366
           V GSMYT+H+PIIAPKISVA+YFNKRHTERNQKTSYSITVQGVVD +GVFTDVCIGWPGS
Sbjct: 318 VVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDHRGVFTDVCIGWPGS 377

Query: 367 MPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGD 426
           MPDDQVLE+SALFQRA+ GLLK VWIVG+SGYPLMDWV+VPY+Q+NLTWTQHAFNEKIG+
Sbjct: 378 MPDDQVLEKSALFQRANGGLLKGVWIVGSSGYPLMDWVLVPYSQQNLTWTQHAFNEKIGE 437

Query: 427 IQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLF 486
           +Q VA+DAFARLKGRW+CLQKRTEVKLQDLPVVLGACCVLHNICE++ E +DP+LK DL 
Sbjct: 438 VQKVARDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICELKGEKIDPELKVDLV 497

Query: 487 DDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
           DDEM+P+ ++RSM+S +ARD IAHNLLHHGLAGTSFL
Sbjct: 498 DDEMVPEVALRSMSSMKARDAIAHNLLHHGLAGTSFL 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887274|dbj|BAK61820.1| hypothetical protein [Citrus unshiu]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/457 (69%), Positives = 383/457 (83%), Gaps = 2/457 (0%)

Query: 67  ILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQ 126
           I+TSL+LL+E+EK +Q      S ++K   + NH+ K++ M +Y+  +QD+Y ++   ++
Sbjct: 61  IITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETER 120

Query: 127 LRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWWDE 186
           ++  K+SR  A++VA + A A+  +  +E       T   GS QHRRLWVKDRSK WWDE
Sbjct: 121 VK-RKKSRSLATSVAAITAIAADDSLQAEK-QVKQGTGGAGSGQHRRLWVKDRSKAWWDE 178

Query: 187 RNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATG 246
            N PD+PEEEF + FRM + TF+MICEEL S + K++T LR+AIPVRQRVAVC+WRLATG
Sbjct: 179 CNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATG 238

Query: 247 EPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPN 306
           EPLR+VSKRFGLGISTCHKLVLEVC+AI++VLMPK+LQWPD+  +++IK+EF+ ISGIPN
Sbjct: 239 EPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPN 298

Query: 307 VGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGS 366
           V GSMYTTH+PIIAPKISVA+YFNKRHTERNQKTSYSITVQGVV+  GVFTDVCIGWPGS
Sbjct: 299 VVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGVFTDVCIGWPGS 358

Query: 367 MPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGD 426
           MPDDQVLE+SAL+QRA  GLLK VWIVG SGYPLMDWV+VPYTQ++LTWTQHAFNEKIG+
Sbjct: 359 MPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGE 418

Query: 427 IQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLF 486
           IQ V+KDAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICEM NE MDP+L FDL 
Sbjct: 419 IQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEEMDPELAFDLV 478

Query: 487 DDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
           DDEM+P+ ++RS++S + RD IAHNLLHHGLAGT+FL
Sbjct: 479 DDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 515

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437265|ref|XP_003588908.1| hypothetical protein MTR_1g015070 [Medicago truncatula] gi|355477956|gb|AES59159.1| hypothetical protein MTR_1g015070 [Medicago truncatula]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/461 (68%), Positives = 379/461 (82%), Gaps = 6/461 (1%)

Query: 67  ILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQ 126
           ILTS++LLDE+EK+E +     S  +K  ++ NHK+K +AM DY+  L+D Y+ ++  ++
Sbjct: 52  ILTSILLLDEQEKQEIEDSKKVSEDEKFSLEANHKKKTKAMVDYYSNLEDGYSQVEESEK 111

Query: 127 LRTNKRSRRTASAVATVAASASASASASEDASADNPTTAG---GSAQHRRLWVKDRSKDW 183
           +R  +R  R  S    +AA+ S +  A+ +    N   +G   G    RRLWVKDRS  W
Sbjct: 112 VR--RRKTRNMSNSVAIAATCSENFEANSEGVNVNDVNSGKSNGGGSQRRLWVKDRSGAW 169

Query: 184 WDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRL 243
           WDE N  DFPE+EF + FRM K+TF++ICEEL S ++K++T LR AIPVRQRVAVC+WRL
Sbjct: 170 WDECNKEDFPEDEFKKAFRMGKSTFDLICEELNSAIVKEDTTLRTAIPVRQRVAVCLWRL 229

Query: 244 ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISG 303
           ATG+PLR+VSKRFGLGISTCHKLVLEVC+AIKTVLMPK+LQWP+E  +++IK EF+G+SG
Sbjct: 230 ATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPNETSLRKIKNEFEGMSG 289

Query: 304 IPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGW 363
           IPNV GSMYT+H+PIIAPKISVA+YFNKRHTERNQKTSYSITVQGVVDT GVFTDVCIGW
Sbjct: 290 IPNVVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDTNGVFTDVCIGW 349

Query: 364 PGSMPDDQVLERSALFQRADR-GLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNE 422
           PGSMPDDQVLE+SALFQRA+  GLLK VWIVG+SGYPLMDWV+VPYTQ+NLTWTQH FNE
Sbjct: 350 PGSMPDDQVLEKSALFQRANNGGLLKGVWIVGSSGYPLMDWVLVPYTQQNLTWTQHGFNE 409

Query: 423 KIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLK 482
           KIG+IQ VAKDAFARLKGRW+CLQKRTEVKLQDLPVVLGACCVLHNICEM+ E MDP+L 
Sbjct: 410 KIGEIQKVAKDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICEMKGEKMDPELM 469

Query: 483 FDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
            D+ DDEM+P+ S+RS+ S +ARD IAHNLLHHGLA   F+
Sbjct: 470 VDIVDDEMVPEVSLRSVNSLKARDAIAHNLLHHGLADCLFI 510

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563940|ref|XP_003550215.1| PREDICTED: putative nuclease HARBI1-like [Glycine max]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/457 (68%), Positives = 385/457 (84%), Gaps = 3/457 (0%)

Query: 67  ILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDLDVMDQ 126
           ILTS++LLDE+EK EQQQ +  S ++K  ++ NHK+K +AM  Y+  L ++Y+ ++  ++
Sbjct: 83  ILTSILLLDEQEKLEQQQNNKVSEEEKFSLETNHKKKTKAMLHYYSNLDEYYSHVEESER 142

Query: 127 LRTNKRSRRTASAVATVAASASASASASEDASADNPTTAGGSAQHRRLWVKDRSKDWWDE 186
           ++  K+SR  A AVA   A+          ++    + AGGS   RRLWVKDRS  WWDE
Sbjct: 143 VK-RKKSRGMARAVAVAVAACEREGEGGGGSAEGGKSGAGGS--QRRLWVKDRSGAWWDE 199

Query: 187 RNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATG 246
            N  DFPEE+F + FRM + TF+MICEEL S ++K++T LR+AIPVRQRVAVC+WRLATG
Sbjct: 200 CNKEDFPEEDFKKAFRMGRETFDMICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATG 259

Query: 247 EPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPN 306
           +PLR+VSKRFGLGISTCHKLVLEVC+AIK+VLMPK+L WPDE+ ++++K EF+G+SGIPN
Sbjct: 260 DPLRIVSKRFGLGISTCHKLVLEVCTAIKSVLMPKYLNWPDEVALRRVKSEFEGVSGIPN 319

Query: 307 VGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGS 366
           V GSMYT+H+PIIAPKISVA+YFNKRHTERNQKTSYSITVQGVVD +GVFTDVCIGWPGS
Sbjct: 320 VVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDHRGVFTDVCIGWPGS 379

Query: 367 MPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGD 426
           MPDDQVLE+SALFQRA+ GLLK  WIVG+SGYPLMDWV+VPY+Q+NLTWTQHAFNEKIG+
Sbjct: 380 MPDDQVLEKSALFQRANGGLLKGDWIVGSSGYPLMDWVLVPYSQQNLTWTQHAFNEKIGE 439

Query: 427 IQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLF 486
           +Q VA+DAFARLKGRW+CLQKRTEVKLQDLPVVLGACCVLHNICE++ E +DP+LK DL 
Sbjct: 440 VQKVARDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICELKGEKIDPELKVDLM 499

Query: 487 DDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
           DDEM+P+ ++RSM+S + RD IAHNLLHHGLAGTSFL
Sbjct: 500 DDEMVPEVALRSMSSMKTRDAIAHNLLHHGLAGTSFL 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:2143104	502	AT5G12010 [Arabidopsis thalian	0.885	0.924	0.609	3.2e-162
TAIR|locus:2123874	540	AT4G29780 "AT4G29780" [Arabido	0.994	0.964	0.562	1.4e-160
ZFIN|ZDB-GENE-050327-32	415	zgc:113227 "zgc:113227" [Danio	0.553	0.698	0.366	2.7e-52
TAIR|locus:2099901	406	AT3G55350 [Arabidopsis thalian	0.561	0.724	0.307	9.2e-36
TAIR|locus:2077259	396	AT3G63270 [Arabidopsis thalian	0.534	0.707	0.294	4.7e-32
UNIPROTKB|E1BQ99	348	HARBI1 "Uncharacterized protei	0.511	0.770	0.275	1.7e-22
UNIPROTKB|E2RCW9	349	HARBI1 "Uncharacterized protei	0.469	0.704	0.283	1e-21
UNIPROTKB|Q96MB7	349	HARBI1 "Putative nuclease HARB	0.469	0.704	0.283	1.3e-21
UNIPROTKB|Q17QR8	349	HARBI1 "Putative nuclease HARB	0.469	0.704	0.279	1.5e-20
UNIPROTKB|F1SIA2	349	HARBI1 "Uncharacterized protei	0.469	0.704	0.275	1.5e-20

TAIR|locus:2143104 AT5G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1563 (555.3 bits), Expect = 3.2e-162, Sum P(2) = 3.2e-162
 Identities = 284/466 (60%), Positives = 357/466 (76%)

Query:    59 NKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHY 118
             N++       TSL+L++E EK++Q+  +  S ++      N++++ + M+DY+  L D+Y
Sbjct:    38 NETKNLKGFFTSLLLMEEHEKQDQEARNAASRREMSDFQSNYRKRARTMSDYYSDLNDYY 97

Query:   119 TDLDVMDQLRTNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPTTAGGSAQHRRLWVKD 178
              D +    +   K+                                  GS Q RRLWVKD
Sbjct:    98 ADAEESGDINL-KKSRVSRAVASVAVAAASEIEAESSEITGSGSVRGTGSGQQRRLWVKD 156

Query:   179 RSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAV 238
             RS+ WW+E +  D+PEE+F + FRMSK+TFE+IC+EL S V K++T LR+AIPVRQRVAV
Sbjct:   157 RSRAWWEECSRLDYPEEDFKKAFRMSKSTFELICDELNSAVAKEDTALRNAIPVRQRVAV 216

Query:   239 CVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEF 298
             C+WRLATGEPLR+VSK+FGLGISTCHKLVLEVC AIK VLMPK+LQWPD+  ++ I+E F
Sbjct:   217 CIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPDDESLRNIRERF 276

Query:   299 QGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTD 358
             + +SGIPNV GSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSIT+Q VV+ KGVFTD
Sbjct:   277 ESVSGIPNVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTD 336

Query:   359 VCIGWPGSMPDDQVLERSALFQRADRG-LLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQ 417
             +CIGWPGSMPDD+VLE+S L+QRA+ G LLK +W+ G  G+PL+DWV+VPYTQ+NLTWTQ
Sbjct:   337 LCIGWPGSMPDDKVLEKSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNLTWTQ 396

Query:   418 HAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVM 477
             HAFNEK+ ++Q VAK+AF RLKGRWACLQKRTEVKLQDLP VLGACCVLHNICEMR E M
Sbjct:   397 HAFNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNICEMREEKM 456

Query:   478 DPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTSFL 523
             +P+L  ++ DDE++P+N +RS+ + +ARD I+HNLLHHGLAGTSFL
Sbjct:   457 EPELMVEVIDDEVLPENVLRSVNAMKARDTISHNLLHHGLAGTSFL 502

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2123874 AT4G29780 "AT4G29780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1564 (555.6 bits), Expect = 1.4e-160, P = 1.4e-160
 Identities = 305/542 (56%), Positives = 384/542 (70%)

Query:     1 MEITRFPF-LNQEEDYSHLLDLLPEMESR-STFIXXXXXXXXXXXXXXXLKKRRRSDD-- 56
             MEI+ FPF   Q+++ SH L L  +M+S  STF                 K+ R+ D+  
Sbjct:     1 MEISSFPFPYLQDDECSHFLGLFQDMDSSPSTF--GLEGFNSNDNNTNQKKRPRKDDEGG 58

Query:    57 --------VL-----NKSAAWSDILTSLILLDEEEKREQQQYSIHSHQDKLLVDDNHKRK 103
                     VL     N  AA+ DIL +L+LLDEE K++Q+Q+     ++K L++ NHK+K
Sbjct:    59 GGGGGGTEVLGAVNGNNKAAFGDILATLLLLDEEAKQQQEQWDFEFIKEKSLLEANHKKK 118

Query:   104 EQAMNDYFHQLQDHYTDLDVMDQLRTNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPT 163
              + M+ Y++Q+QDHY+     D  R+ +                             +  
Sbjct:   119 VKTMDGYYNQMQDHYSAAGETDGSRSKRARKTAVAAVVSAVASGADTTGLAAPVPTADIA 178

Query:   164 TAGGSA-QHRRLWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKK 222
             +  GS   HRRLWVK+R+ DWWD  + PDFPE+EF R+FRMSK+TF +ICEEL++TV KK
Sbjct:   179 SGSGSGPSHRRLWVKERTTDWWDRVSRPDFPEDEFRREFRMSKSTFNLICEELDTTVTKK 238

Query:   223 NTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKF 282
             NTMLRDAIP  +RV VCVWRLATG PLR VS+RFGLGISTCHKLV+EVC AI  VLMPK+
Sbjct:   239 NTMLRDAIPAPKRVGVCVWRLATGAPLRHVSERFGLGISTCHKLVIEVCRAIYDVLMPKY 298

Query:   283 LQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSY 342
             L WP + ++   K +F+ +  IPNV GS+YTTHIPIIAPK+ VA+YFNKRHTERNQKTSY
Sbjct:   299 LLWPSDSEINSTKAKFESVHKIPNVVGSIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSY 358

Query:   343 SITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALF-QRADRGLLKDVWIVGNSGYPLM 401
             SITVQGVV+  G+FTDVCIG PGS+ DDQ+LE+S+L  QRA RG+L+D WIVGNSG+PL 
Sbjct:   359 SITVQGVVNADGIFTDVCIGNPGSLTDDQILEKSSLSRQRAARGMLRDSWIVGNSGFPLT 418

Query:   402 DWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLG 461
             D+++VPYT++NLTWTQHAFNE IG+IQ +A  AF RLKGRWACLQKRTEVKLQDLP VLG
Sbjct:   419 DYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLKGRWACLQKRTEVKLQDLPYVLG 478

Query:   462 ACCVLHNICEMRNEVMDPQLKFDLFDDEMIPDNSVRSMASAQARDHIAHNLLHHGLAGTS 521
             ACCVLHNICEMR E M P+LKF++FDD  +P+N++RS ++   RDHI+HNLLH GLAGT 
Sbjct:   479 ACCVLHNICEMRKEEMLPELKFEVFDDVAVPENNIRSASAVNTRDHISHNLLHRGLAGTR 538

Query:   522 FL 523
              L
Sbjct:   539 TL 540

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

ZFIN|ZDB-GENE-050327-32 zgc:113227 "zgc:113227" [Danio rerio (taxid:7955)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 114/311 (36%), Positives = 186/311 (59%)

Query:   174 LWVKDRSKDWWDERNHPDFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVR 233
             +W   R   WWD    P+F  EEF ++FR+S+ +FE IC  L   + +K+T  R ++PV+
Sbjct:    59 VWSHPREHRWWDVIV-PEFTPEEFIQNFRVSRESFEYICRRLRHMLERKDTNFRLSVPVK 117

Query:   234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQ 293
             +RVA+ + +LATG   R VS+ FG+G+ST    V + CSA+  +L+P  +++P   K+K+
Sbjct:   118 KRVAIALCKLATGSEYRYVSQLFGVGVSTVFNCVQDFCSAVIKILVPVHMKFPSPEKLKE 177

Query:   294 IKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTK 353
             + + F+    +P   GS+   HIPIIAP+ +   Y N+       K  +S+ +Q VVD  
Sbjct:   178 MADVFENCWNVPQCIGSIDAHHIPIIAPEKNPRGYLNR-------KGWHSVVLQAVVDGN 230

Query:   354 GVFTDVCIGWPGSMPDDQVLERSALFQR-ADRGLLK---------DV--WIVGNSGYPLM 401
             G+F D+C+G+ G++ D +VL +S L+   ++R LL          DV  +++G+S YPL 
Sbjct:   231 GLFWDLCVGFSGNLSDARVLRQSYLWSLLSERDLLNHNKVDISGCDVGYYLIGDSAYPLQ 290

Query:   402 DWVMVPYTQ-KNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVL 460
             +W+M P+     LT  Q +FN ++   ++V+  +F +LK RW CL +R + K++ +  + 
Sbjct:   291 NWLMKPFPDIGGLTPQQESFNSRLSSARSVSDLSFKKLKARWQCLFRRNDCKVELVKKMA 350

Query:   461 GACCVLHNICE 471
               CCVLHNICE
Sbjct:   351 LTCCVLHNICE 361

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2099901 AT3G55350 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 100/325 (30%), Positives = 173/325 (53%)

Query:   179 RSKDWWD---ERNHPDFPEEEFWRD-FRMSKATFEMICEELESTVMKKNTMLRDA----I 230
             +S DWWD    R +    + + +   F++S+ TF+ IC  +++    K     D+    +
Sbjct:    50 QSLDWWDGFSRRIYGGSTDPKTFESVFKISRKTFDYICSLVKADFTAKPANFSDSNGNPL 109

Query:   231 PVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELK 290
              +  RVAV + RL +GE L V+ + FG+  ST  ++      +++   +   L WP   K
Sbjct:   110 SLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAI-HHLSWPS--K 166

Query:   291 MKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVV 350
             + +IK +F+ ISG+PN  G++  THI +  P +  +   NK   +  +K ++S+T+Q VV
Sbjct:   167 LDEIKSKFEKISGLPNCCGAIDITHIVMNLPAVEPS---NKVWLD-GEK-NFSMTLQAVV 221

Query:   351 DTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGL--------LKD-----VWIVGNSG 397
             D    F DV  GWPGS+ DD VL+ S  ++  ++G         L +      +IVG+SG
Sbjct:   222 DPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSG 281

Query:   398 YPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQD-L 456
             +PL+ W++ PY  K  +  Q  FN++  +    A+ A ++LK RW  +     +  ++ L
Sbjct:   282 FPLLPWLLTPYQGKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRL 341

Query:   457 PVVLGACCVLHNIC-EMRNEVMDPQ 480
             P ++  CC+LHNI  +M ++ +D Q
Sbjct:   342 PRIIFVCCLLHNIIIDMEDQTLDDQ 366

GO:0005634 "nucleus" evidence=ISM

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

TAIR|locus:2077259 AT3G63270 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 91/309 (29%), Positives = 158/309 (51%)

Query:   183 WWDERNHPDFPEEE---FWRDFRMSKATFEMICEEL-ESTVMKKNTMLRDA----IPVRQ 234
             +W   + P  P +E   F   FR SK TF  IC  + E  + +  + L +     + V +
Sbjct:    48 FWLRNSSPSVPSDEDYAFKHFFRASKTTFSYICSLVREDLISRPPSGLINIEGRLLSVEK 107

Query:   235 RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQI 294
             +VA+ + RLA+G+    V   FG+G ST  ++      A++       L+WPD  ++++I
Sbjct:   108 QVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE-RAKHHLRWPDSDRIEEI 166

Query:   295 KEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKG 354
             K +F+ + G+PN  G++ TTHI +  P +  +  +       +Q+ +YS+ +QGV D + 
Sbjct:   167 KSKFEEMYGLPNCCGAIDTTHIIMTLPAVQASDDWC------DQEKNYSMFLQGVFDHEM 220

Query:   355 VFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKD-------------VWIVGNSGYPLM 401
              F ++  GWPG M   ++L+ S  F+  +   + D              ++VG   YPL+
Sbjct:   221 RFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGAQIREYVVGGISYPLL 280

Query:   402 DWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQK-RTEVKLQDLPVVL 460
              W++ P+   + + +  AFNE+   +++VA  AF +LKG W  L K       + LP ++
Sbjct:   281 PWLITPHDSDHPSDSMVAFNERHEKVRSVAATAFQQLKGSWRILSKVMWRPDRRKLPSII 340

Query:   461 GACCVLHNI 469
               CC+LHNI
Sbjct:   341 LVCCLLHNI 349

GO:0005634 "nucleus" evidence=ISM

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

UNIPROTKB|E1BQ99 HARBI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 79/287 (27%), Positives = 134/287 (46%)

Query:   192 FPEEEFWRDFRMSKATF--EMICE--ELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGE 247
             F  E+   ++ +S   F  + IC   +L    + + T    AI    +V   +    +G 
Sbjct:    25 FKLEDVTDEYLVSTYGFPRQFICYLVDLLGASLSRPTQRSRAISPETQVLAALGFYTSGS 84

Query:   248 PLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPN 306
                 +    G+  ++  + V  V  A+     P+F+ +P DE  ++ +K++F  ++G+P 
Sbjct:    85 FQTRMGDAIGISQASMSRCVANVTEAL-VERAPQFIHFPEDEAAVQSLKDDFYALAGMPG 143

Query:   307 VGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGS 366
             V G +  TH+ I AP     SY N+       K  +S+    V D +G        WPGS
Sbjct:   144 VLGVVDCTHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDARGALLSAETHWPGS 196

Query:   367 MPDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGD 426
             MPD  VL+++AL  + +  L KD W++G+S + L  W+M P      T  ++ +N     
Sbjct:   197 MPDCNVLQQAALTSQFENELYKDGWLLGDSSFFLRTWLMTPLHIPE-TPAEYRYNMAHSA 255

Query:   427 IQAVAKDAFARLKGRWACLQKRTEVKLQDLPV----VLGACCVLHNI 469
                V +  F  ++ R+ CL   ++  LQ  P     ++ ACCVLHNI
Sbjct:   256 THNVIERTFRTIRSRFRCLDG-SKGTLQYSPEKSSHIILACCVLHNI 301

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|E2RCW9 HARBI1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 74/261 (28%), Positives = 123/261 (47%)

Query:   214 ELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSA 273
             EL    + + T    AI    ++   +    +G     +    G+  ++  + V  V  A
Sbjct:    51 ELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEA 110

Query:   274 IKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKR 332
             +      +F+++P DE  M+ +K+EF G++G+P V G +   H+ I AP     SY N+ 
Sbjct:   111 L-VERATQFIRFPADEASMQALKDEFYGLAGMPGVIGVVDCIHVAIKAPNAEDLSYVNR- 168

Query:   333 HTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWI 392
                   K  +S+    V D +G    V   WPGS+ D  VL++S+L    + G+ KD W+
Sbjct:   169 ------KGLHSLNCLMVCDIRGALMTVETNWPGSLQDYAVLQQSSLNSHFEAGMHKDSWL 222

Query:   393 VGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVK 452
             +G+S + L  W+M P      T  ++ +N       +V +  F  L  R+ CL   ++  
Sbjct:   223 LGDSSFFLRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGA 280

Query:   453 LQDLPV----VLGACCVLHNI 469
             LQ  P     ++ ACCVLHNI
Sbjct:   281 LQYSPEKSSHIILACCVLHNI 301

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96MB7 HARBI1 "Putative nuclease HARBI1" [Homo sapiens (taxid:9606)]

 Score = 258 (95.9 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 74/261 (28%), Positives = 124/261 (47%)

Query:   214 ELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSA 273
             EL    + + T    AI    +V   +    +G     +    G+  ++  + V  V  A
Sbjct:    51 ELLGANLSRPTQRSRAISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEA 110

Query:   274 IKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKR 332
             +      +F+++P DE  ++ +K+EF G++G+P V G +   H+ I AP     SY N+ 
Sbjct:   111 L-VERASQFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNR- 168

Query:   333 HTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWI 392
                   K  +S+    V D +G    V   WPGS+ D  VL++S+L  + + G+ KD W+
Sbjct:   169 ------KGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWL 222

Query:   393 VGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVK 452
             +G+S + L  W+M P      T  ++ +N       +V +  F  L  R+ CL   ++  
Sbjct:   223 LGDSSFFLRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGA 280

Query:   453 LQDLPV----VLGACCVLHNI 469
             LQ  P     ++ ACCVLHNI
Sbjct:   281 LQYSPEKSSHIILACCVLHNI 301

GO:0004518 "nuclease activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|Q17QR8 HARBI1 "Putative nuclease HARBI1" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 73/261 (27%), Positives = 123/261 (47%)

Query:   214 ELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSA 273
             EL    + + T    AI    ++   +    +G     +    G+  ++  + V  V  A
Sbjct:    51 ELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEA 110

Query:   274 IKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKR 332
             +      +F+ +P DE  ++ +K+EF G++GIP V G +   H+ I AP     SY N+ 
Sbjct:   111 L-VERASQFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNR- 168

Query:   333 HTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWI 392
                   K  +S+    V D +G    V   WPGS+ D  VL++S+L  + + G+ K+ W+
Sbjct:   169 ------KGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWL 222

Query:   393 VGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVK 452
             +G+S + L  W+M P      T  ++ +N       +V +  F  L  R+ CL   ++  
Sbjct:   223 LGDSSFFLRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGA 280

Query:   453 LQDLPV----VLGACCVLHNI 469
             LQ  P     ++ ACCVLHNI
Sbjct:   281 LQYSPEKSSHIILACCVLHNI 301

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

UNIPROTKB|F1SIA2 HARBI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 72/261 (27%), Positives = 125/261 (47%)

Query:   214 ELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSA 273
             EL  + + + T    AI    ++   +    +G     +    G+  ++  + V  V  A
Sbjct:    51 ELLGSSLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVTNVTEA 110

Query:   274 IKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKR 332
             +      +F+++P DE  ++ +K+EF G++G+P V G +   H+ I AP     SY N+ 
Sbjct:   111 L-VERASQFIRFPADEASVQALKDEFYGLAGMPGVIGVVDCIHVAIKAPNAEDLSYVNR- 168

Query:   333 HTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWI 392
                   K  +S+    V D +G    V   WPGS+ D  VL++S+L  + + G+ K+ W+
Sbjct:   169 ------KGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCVVLQQSSLSSQFEAGMHKESWL 222

Query:   393 VGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVK 452
             +G+S + L  W+M P      T  ++ +N       +V +  F  L  R+ CL   ++  
Sbjct:   223 LGDSSFFLRSWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGA 280

Query:   453 LQDLPV----VLGACCVLHNI 469
             LQ  P     ++ ACCVLHNI
Sbjct:   281 LQYSPEKCSHIILACCVLHNI 301

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.207.4.1 hypothetical protein (456 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
pfam13359	155	pfam13359, DDE_4, DDE superfamily endonuclease	1e-40

>gnl|CDD|222071 pfam13359, DDE_4, DDE superfamily endonuclease

 Score =  143 bits (362), Expect = 1e-40
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 311 MYTTHIPIIAPK---ISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSM 367
           +  T IPI  PK       +Y   +          ++ V  VVD  G    V +GWPGS+
Sbjct: 1   IDGTEIPIERPKSLEEQAQTYSGYKKH-------NTLKVLIVVDPDGRIIFVSVGWPGSV 53

Query: 368 PDDQVLERSALFQRADRGLLKDVWIVGNSGYPLMDWVMVP----YTQKNLTWTQHAFNEK 423
            D ++LE S L ++   G     +++ + G+PL D ++ P         LT  +  FN +
Sbjct: 54  SDKRILENSGLLEKLPPGD----YVLADRGFPLSDSLLAPPAKKPGGAQLTEEEVEFNRR 109

Query: 424 IGDIQAVAKDAFARLKGRWACLQKRTEVK-LQDLPVVLGACCVLHN 468
           I   +   +    RLKGR+  L+ R  +  L  L  ++  CC LHN
Sbjct: 110 IASARIHVERVIGRLKGRFRILRGRLRISKLTTLDKIVLVCCALHN 155

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
KOG4585	326	consensus Predicted transposase [Replication, reco	100.0
PF13359	158	DDE_Tnp_4: DDE superfamily endonuclease	100.0
PF04827	205	Plant_tran: Plant transposon protein; InterPro: IP	99.96
PF13612	155	DDE_Tnp_1_3: Transposase DDE domain	98.74
PF13613	53	HTH_Tnp_4: Helix-turn-helix of DDE superfamily end	98.67
PF01609	213	DDE_Tnp_1: Transposase DDE domain; InterPro: IPR00	97.54
PF13586	88	DDE_Tnp_1_2: Transposase DDE domain	95.76
PF04218	53	CENP-B_N: CENP-B N-terminal DNA-binding domain; In	93.86
PF04545	50	Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763	92.96
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	92.79
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	92.73
PF13518	52	HTH_28: Helix-turn-helix domain	88.96
PF13384	50	HTH_23: Homeodomain-like domain; PDB: 2X48_C.	88.75
PF12116	82	SpoIIID: Stage III sporulation protein D; InterPro	88.56
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.49
smart00351	125	PAX Paired Box domain.	86.95
PF13340	75	DUF4096: Putative transposase of IS4/5 family (DUF	86.71
PF02209	36	VHP: Villin headpiece domain; InterPro: IPR003128	86.33
PF13011	85	LZ_Tnp_IS481: leucine-zipper of insertion element	85.51
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	84.55
cd00569	42	HTH_Hin_like Helix-turn-helix domain of Hin and re	84.48
cd00131	128	PAX Paired Box domain	84.34
smart00153	36	VHP Villin headpiece domain.	83.85
smart00421	58	HTH_LUXR helix_turn_helix, Lux Regulon. lux regulo	83.67
COG3415	138	Transposase and inactivated derivatives [DNA repli	81.96
PRK09413	121	IS2 repressor TnpA; Reviewed	81.61
PF05225	45	HTH_psq: helix-turn-helix, Psq domain; InterPro: I	81.38
PRK04217	110	hypothetical protein; Provisional	81.18
PRK09639	166	RNA polymerase sigma factor SigX; Provisional	80.33
cd06171	55	Sigma70_r4 Sigma70, region (SR) 4 refers to the mo	80.11

>KOG4585 consensus Predicted transposase [Replication, recombination and repair]

Probab=100.00  E-value=1.5e-39  Score=334.59  Aligned_cols=297  Identities=38%  Similarity=0.616  Sum_probs=238.4

Q ss_pred             HcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhh
Q 041521          200 DFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV  277 (524)
Q Consensus       200 ~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~  277 (524)
                      .|++++.+|+.++...........  ......+++..+++++|+.++++.+.+.++..||...+|+      ++......
T Consensus         7 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~fg~~~~~~------~~~~~~~~   80 (326)
T KOG4585|consen    7 EFRKSYTTFDKICSLVQSLNVVKNSGFMLSSLLPADTLVAVALWRLKTGESLRTVEKKFGLGQSTC------KFLEEKED   80 (326)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccchhhhccccHHhhhhhhhccccccchHHHHHHHcCCcchhh------hHHHhhhc
Confidence            788999999999998765433222  1222333388899999999999999999999999999998      34444445


Q ss_pred             cccccccCcchHHHHHHHhhhccccCCCccccCCcceeeeEecCCCccccccccccccccCCCCccccccccccCCCcee
Q 041521          278 LMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFT  357 (524)
Q Consensus       278 L~~~~I~~P~~ee~~~i~~~F~~~~gfP~~vGaIDgThIpI~~P~~~~~~y~n~~~~~rn~K~~~Si~vq~v~D~~g~fi  357 (524)
                      +++.++.||....+..+.+.|+.   +|+|+|+||+||+++..|....+.|+|+         .++.++|+|||++++|+
T Consensus        81 ~~~~~~~~p~~~~~~~i~~~~~~---~~~~~g~~d~~hi~~~~~~~~~~~~~n~---------~~~~Nvlav~n~d~~f~  148 (326)
T KOG4585|consen   81 LAPHFLKWPSRRILYEIRERFES---LPNCVGAIDTTHIPIRVPPKSGSVYFNK---------EQSKNLLAVCNFDMRFI  148 (326)
T ss_pred             ccchhhcCchhhhhhhhcccccc---ccchhccccccccceecCcccccccccc---------ccchhhhheecCCceEE
Confidence            68999999998888889899877   9999999999999999999988888763         67888999999999999


Q ss_pred             eecCCCCCCCCChHHHHhHHHHhhhhccccc-----------eEEEEcccCCCCccccccccccCCcccchhhccccccc
Q 041521          358 DVCIGWPGSMPDDQVLERSALFQRADRGLLK-----------DVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGD  426 (524)
Q Consensus       358 ~v~~g~pGS~hDs~V~~~S~L~~~l~~~~~~-----------g~~lLGD~gYpl~~~LmtPy~~~~lt~~q~~FN~~ls~  426 (524)
                      +|++||||+.||+.|++.+.+......+.+.           ..+++|+.+||+.+++|+||.++.++..++.||.+|+.
T Consensus       149 ~v~vg~~Gs~~D~kvl~~~~~~~~~~~~~~~k~yl~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~elFN~rh~~  228 (326)
T KOG4585|consen  149 YVDVGWPGSAHDTKVLQDSLLYKRNFPHPPLKYYLVDSGYPLRPGLLGPIGFPLYSLLMFPYGGPQPTNSQELFNKRHSS  228 (326)
T ss_pred             EEEccCCCCccHHHHHHhhcccccccccCCccccccccCcccccccccccccccchhhhcccCCCCCCchHHHHhhhhhh
Confidence            9999999999999999999988766544442           45666667777777788888887778899999999999


Q ss_pred             chhhhhhcccccccccccccccccccCCCccceehhhHHHHhhhhhcCCCCCCCCCcCCCCCCC-----CCCCcccChhH
Q 041521          427 IQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEVMDPQLKFDLFDDEM-----IPDNSVRSMAS  501 (524)
Q Consensus       427 ~R~~VE~aFG~LK~RFriL~~~~~~~~~~~~~iI~AccvLHNi~~~~~~~~~~~~~~~~~dd~~-----~p~~~~~~~~~  501 (524)
                      +|.++|++||+||+||+||+........+.+.||.|||+|||||++..+..+++...+..++..     .........-+
T Consensus       229 ~r~v~e~~fg~lk~rw~il~~~~~~~~~~~~~iV~a~caLHN~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~  308 (326)
T KOG4585|consen  229 LRSVAERAFGVLKAKWRILQRREKYDLKKLPKIVTACCALHNIIRDSDEEDPDDPKWEKFDDYGENVAHLRYAPQQRDYM  308 (326)
T ss_pred             HHHHHHHHHHHhhhhhHHHhhcccccccchHHHHHHHHHHHHHHHhhcccccccccccccccccccchhcccchhHHHHH
Confidence            9999999999999999999998667788999999999999999999877543322222223322     11111223346


Q ss_pred             HHHHHHHHHHHhh
Q 041521          502 AQARDHIAHNLLH  514 (524)
Q Consensus       502 ~~~Rd~ia~~l~~  514 (524)
                      ..+||.|+..||.
T Consensus       309 ~~~r~~l~~~l~~  321 (326)
T KOG4585|consen  309 EKIRDNLLSELWN  321 (326)
T ss_pred             HHHHHHHHHHHHh
Confidence            7788999988864

>PF13359 DDE_Tnp_4: DDE superfamily endonuclease

Probab=100.00  E-value=1.1e-36  Score=282.36  Aligned_cols=152  Identities=33%  Similarity=0.665  Sum_probs=138.7

Q ss_pred             CcceeeeEecCCCc--cccccccccccccCCCCccccccccccCCCceeeecCCCCCCCCChHHHHhHHHHhhhhccccc
Q 041521          311 MYTTHIPIIAPKIS--VASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLK  388 (524)
Q Consensus       311 IDgThIpI~~P~~~--~~~y~n~~~~~rn~K~~~Si~vq~v~D~~g~fi~v~~g~pGS~hDs~V~~~S~L~~~l~~~~~~  388 (524)
                      ||||||+|.+|...  ...+|      +++|+.|++++|+|||++|+|++|+++||||+||++||++|++...++..++.
T Consensus         1 iDgt~v~i~~P~~~~~~~~~y------~~~k~~~~~~~q~v~d~~g~i~~v~~~~~Gs~~D~~i~~~s~~~~~l~~~~~~   74 (158)
T PF13359_consen    1 IDGTHVPIQRPSDKEEQREFY------SGKKKNHSLKVQIVCDPDGRIIYVSVGWPGSVHDSTIFRQSGLLDRLEQAFPP   74 (158)
T ss_pred             CccEEEEEEeCCccccccccc------cCCCCcceEeEEEEEeccceeEeeecccccccccccccccccccceeeccccc
Confidence            79999999999872  23333      45799999999999999999999999999999999999999999887633667


Q ss_pred             eEEEEcccCCCCccccccccc---cCCcccchhhcccccccchhhhhhccccccccccccccccccc-CCCccceehhhH
Q 041521          389 DVWIVGNSGYPLMDWVMVPYT---QKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVK-LQDLPVVLGACC  464 (524)
Q Consensus       389 g~~lLGD~gYpl~~~LmtPy~---~~~lt~~q~~FN~~ls~~R~~VE~aFG~LK~RFriL~~~~~~~-~~~~~~iI~Acc  464 (524)
                      ++|+|||+|||+.+++|+||+   +..++..|+.||++|+++|++||++||+||+||+||...++.+ ++.+..+|.|||
T Consensus        75 ~~~~l~D~gy~~~~~~~~P~~~~~~~~l~~~e~~~N~~~s~~R~~vE~~~~~lK~rf~~l~~~~~~~~~~~~~~ii~~~~  154 (158)
T PF13359_consen   75 GEYLLGDSGYPLSPYLLTPYKKPKGRELTPEEKEFNRRHSSARIIVERAFGRLKSRFRILRGRLRLSRPEKAPQIILACC  154 (158)
T ss_pred             CccccccccccccccccccccccccccccccccchhccccceeeeeHHHHHHHHHhcccCCcccCCCcHhHHHHHHheeE
Confidence            899999999999999999996   5578999999999999999999999999999999999888888 899999999999


Q ss_pred             HHHh
Q 041521          465 VLHN  468 (524)
Q Consensus       465 vLHN  468 (524)
                      +|||
T Consensus       155 ~LhN  158 (158)
T PF13359_consen  155 VLHN  158 (158)
T ss_pred             EEEC
Confidence            9999

>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity

Probab=99.96  E-value=1.4e-31  Score=251.33  Aligned_cols=185  Identities=21%  Similarity=0.294  Sum_probs=166.5

Q ss_pred             ccccCcchHHHHHHHhhhccccCCCccccCCcceeeeEe-cCCCccccccccccccccCCCCccccccccccCCCceeee
Q 041521          281 KFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTTHIPII-APKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDV  359 (524)
Q Consensus       281 ~~I~~P~~ee~~~i~~~F~~~~gfP~~vGaIDgThIpI~-~P~~~~~~y~n~~~~~rn~K~~~Si~vq~v~D~~g~fi~v  359 (524)
                      +|++-|+.++++.+.+.+ +..||||.+|+|||+|+.+. +|......|..      ++++..++.+++|++.+.+|+++
T Consensus         2 ~YLr~P~~~d~~rll~~~-e~rGFpGmlGSIDCmHw~WkncP~aw~g~~~~------G~~g~pTiiLEaVAs~dlwIWha   74 (205)
T PF04827_consen    2 EYLRRPTNEDLERLLQIG-EARGFPGMLGSIDCMHWEWKNCPTAWKGQYTR------GKEGVPTIILEAVASHDLWIWHA   74 (205)
T ss_pred             cccCCCChhHHHHHHHhh-hhcCCCccccceeEEEeehhcchHHhhhcccC------CCCCCCeehhhhhhccchhhhhe
Confidence            588999999999999666 56899999999999999999 78777677753      46899999999999999999999


Q ss_pred             cCCCCCCCCChHHHHhHHHHhhhhccccc------------eEEEEcccCCCCccccccccccCCcccchhhcccccccc
Q 041521          360 CIGWPGSMPDDQVLERSALFQRADRGLLK------------DVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDI  427 (524)
Q Consensus       360 ~~g~pGS~hDs~V~~~S~L~~~l~~~~~~------------g~~lLGD~gYpl~~~LmtPy~~~~lt~~q~~FN~~ls~~  427 (524)
                      ..|.|||.+|..|+..|+|+..+..|..+            -.|+|+|..||-...++...+.|. +.+++.|.++..++
T Consensus        75 ffG~~GS~NDiNVL~~Splf~~~~~G~ap~v~f~VNg~~Y~~gYYLaDGiYP~watfvktI~~p~-~~k~k~fa~~QE~~  153 (205)
T PF04827_consen   75 FFGMPGSNNDINVLDRSPLFDDLLQGQAPRVQFTVNGHEYNMGYYLADGIYPEWATFVKTISLPQ-GEKRKLFAKHQESA  153 (205)
T ss_pred             eeccCCcccccccccccHHHHHHhcCcCCceEEEecCeecccceeeccCcCcchHhHhhhcchhh-chhhHHHHHhCHHH
Confidence            99999999999999999999988766321            368999999999999999999886 67899999999999


Q ss_pred             hhhhhhccccccccccccccccc-ccCCCccceehhhHHHHhhhhhc
Q 041521          428 QAVAKDAFARLKGRWACLQKRTE-VKLQDLPVVLGACCVLHNICEMR  473 (524)
Q Consensus       428 R~~VE~aFG~LK~RFriL~~~~~-~~~~~~~~iI~AccvLHNi~~~~  473 (524)
                      |.-||+|||+|++||+|++.+.+ .+.+++..|+.||++||||+++.
T Consensus       154 RKDVErAFGVLQaRfaIi~~p~r~w~~~~l~~Im~aCiILHNMIvED  200 (205)
T PF04827_consen  154 RKDVERAFGVLQARFAIIRGPARLWDREDLANIMRACIILHNMIVED  200 (205)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhccCHHHHHHHHHHHHHhhheeEec
Confidence            99999999999999999999866 67789999999999999999863

However it does not have transposase activity [, ]. ; GO: 0016788 hydrolase activity, acting on ester bonds

>PF13612 DDE_Tnp_1_3: Transposase DDE domain

Probab=98.74  E-value=1.7e-09  Score=100.73  Aligned_cols=131  Identities=16%  Similarity=0.183  Sum_probs=97.0

Q ss_pred             CCccccCCcceeeeEecCCCcc-------ccccccccccccCCCCccccccccccCCCceeeecCCCCCCCCChHHHHhH
Q 041521          304 IPNVGGSMYTTHIPIIAPKISV-------ASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERS  376 (524)
Q Consensus       304 fP~~vGaIDgThIpI~~P~~~~-------~~y~n~~~~~rn~K~~~Si~vq~v~D~~g~fi~v~~g~pGS~hDs~V~~~S  376 (524)
                      -+..+.+||.|.||++.|....       .++++    |...+-+|++++.++|+..|.++.+.+. ||++||..++.  
T Consensus         3 ~~~~i~~iDS~Pi~vC~~~R~~r~k~~~~~a~~G----~~a~~~fyGfKlHllv~~~G~i~~~~lT-~an~~D~~~~~--   75 (155)
T PF13612_consen    3 QCTGIYIIDSFPIPVCHNIRIKRHKVFKGLAYRG----YCAMGWFYGFKLHLLVNDSGEIVAFTLT-PANVHDRKVLE--   75 (155)
T ss_pred             CccEEEEEecCChhHhCccchhhhccccCccccc----eeccceeEeeeeeeEEccCCcEEEEEEc-ccccccccccc--
Confidence            4567889999999999776421       22222    2233457999999999999999998774 99999999884  


Q ss_pred             HHHhhhhccccceEEEEcccCCCCcc----------ccccccccCCcccchhhcccccccchhhhhhccccccccccccc
Q 041521          377 ALFQRADRGLLKDVWIVGNSGYPLMD----------WVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQ  446 (524)
Q Consensus       377 ~L~~~l~~~~~~g~~lLGD~gYpl~~----------~LmtPy~~~~lt~~q~~FN~~ls~~R~~VE~aFG~LK~RFriL~  446 (524)
                      .+.    ..+  ...|+||.||-...          .|+||.+...-......+++.+.+.|.+||-.|+.||+.|.+=+
T Consensus        76 ~l~----~~~--~g~l~gDkGYis~~L~~~L~~~gI~L~t~~RkNmk~~~~~~~~~~l~~~R~~IETvfs~Lk~~~~ie~  149 (155)
T PF13612_consen   76 ELS----ENL--KGKLFGDKGYISKELKDELKEQGIKLITPRRKNMKNKLMPLFDKLLLRKRRIIETVFSQLKNQFNIEH  149 (155)
T ss_pred             ccc----ccc--ccceecchhhhcchHHhhhhhceEEEeccccccccccccchhhhhhhheeeEeehHHHHHHHhhceEe
Confidence            222    222  34799999996433          47899986532233456788999999999999999999888755


Q ss_pred             c
Q 041521          447 K  447 (524)
Q Consensus       447 ~  447 (524)
                      .
T Consensus       150 ~  150 (155)
T PF13612_consen  150 S  150 (155)
T ss_pred             e
Confidence            3

>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease

Probab=98.67  E-value=7.5e-09  Score=79.18  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=47.9

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .++++++++++|.||+.|.++.++|..||||+|||++++++++++++..+
T Consensus         2 kLs~~d~lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~~~L~~~l   51 (53)
T PF13613_consen    2 KLSLEDQLLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWIPLLYQVL   51 (53)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999999999999998865

>PF01609 DDE_Tnp_1: Transposase DDE domain; InterPro: IPR002559 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=97.54  E-value=3.3e-06  Score=79.94  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             ccccCCcceeeeEecCCCccccccccccccccCCCCccccccccc-cCCCceeeecCCCCCCCCChHHHHhHHHHhhhhc
Q 041521          306 NVGGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVV-DTKGVFTDVCIGWPGSMPDDQVLERSALFQRADR  384 (524)
Q Consensus       306 ~~vGaIDgThIpI~~P~~~~~~y~n~~~~~rn~K~~~Si~vq~v~-D~~g~fi~v~~g~pGS~hDs~V~~~S~L~~~l~~  384 (524)
                      ..+-+||+|+|+.. +......++      .+++.....+++++| +..|.++.+.+. +|+++|...+..  +.+.  .
T Consensus         4 ~~~~~iD~T~i~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d~~~~~~--ll~~--~   71 (213)
T PF01609_consen    4 RRVVAIDGTTIRTP-HDKSARRYK------KGKKRGFGYKLHLAVDDNSGLPLSVKVT-PGNVHDSKALPE--LLER--K   71 (213)
T ss_dssp             EEEEEEETTT--EE-EEEEE-B-S------SGGGHSSHGGHHHHHHHHHGGGGGGEEE-EEEGG-HHHHHH--HHTT---
T ss_pred             CeEEEEECcEEEee-cchhhhccc------CCCCcCCCEeEEEEEeecccceeeeecc-ccccceeecccc--cccc--c
Confidence            35678999999998 111112222      223556667899988 566777777777 999999998885  3333  2


Q ss_pred             cccceEEEEcccCCCCccc----------cccccccCCcc----------------------------------cchhhc
Q 041521          385 GLLKDVWIVGNSGYPLMDW----------VMVPYTQKNLT----------------------------------WTQHAF  420 (524)
Q Consensus       385 ~~~~g~~lLGD~gYpl~~~----------LmtPy~~~~lt----------------------------------~~q~~F  420 (524)
                      ....+.++++|+||.-.+.          .+.|.+.....                                  ..+...
T Consensus        72 ~~~~~~~vv~D~gy~s~~~~~~l~~~~~~~vi~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (213)
T PF01609_consen   72 PGRKPDLVVADRGYDSAENLEALKERGIHFVIRLKKNRKKKIQKIENKFWKSFDRRSARKKPKQKSKRVRVVIRKEQKKK  151 (213)
T ss_dssp             ----EEEEEE-S--BBTTHHHHHHTS---EEEEE--EEEE-TTS-EEEE--EEEEEEEEEEETGGGEEEEEEEEEECS--
T ss_pred             ccccccceeecccccceeccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence            2345789999999975542          23444322100                                  111111


Q ss_pred             ccc--------------cccchhhhhhcccccccccccccccccccCCCccceehhhHHHHhh
Q 041521          421 NEK--------------IGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVLHNI  469 (524)
Q Consensus       421 N~~--------------ls~~R~~VE~aFG~LK~RFriL~~~~~~~~~~~~~iI~AccvLHNi  469 (524)
                      ...              +.+.|-.||+.|..||+.|. |..........+...+.+|++-.|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~Y~~Rw~IE~~f~~lK~~~~-l~~~~~~~~~~~~~~~~~~~la~nl  213 (213)
T PF01609_consen  152 GYFLVTNITTLPRDTAALYRRRWQIERFFRELKQFLG-LERLRVRSPERIEAHLFLTLLAYNL  213 (213)
T ss_dssp             TTS---EEEEEESS--SHHHCGGHHHHHHHHHTTTTT-GGGS--SSHHHHHHHHHHHHHH---
T ss_pred             cccccccccccccccceeecccchhhHHHHHHHhcCC-CchhcccCHHHHHHHHHHHHhhCcC
Confidence            222              77889999999999998655 3222223344555556666665553

Transposases have been grouped into various families [, , ]. This family includes the IS4 transposase. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A 1B7E_A.

>PF13586 DDE_Tnp_1_2: Transposase DDE domain

Probab=95.76  E-value=0.002  Score=54.20  Aligned_cols=50  Identities=22%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             chhhcccccccchhhhhhcccccccccccccccccccCCCccceehhhHHH
Q 041521          416 TQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPVVLGACCVL  466 (524)
Q Consensus       416 ~q~~FN~~ls~~R~~VE~aFG~LK~RFriL~~~~~~~~~~~~~iI~AccvL  466 (524)
                      .+..+...+...|.+||++|+-|| +|+.|....+.........|.-+|++
T Consensus        35 ~~~~~d~~~~~~Rw~VEr~f~wlk-~~Rrl~~ryek~~~s~~~~v~la~~~   84 (88)
T PF13586_consen   35 RPRKFDFRLYKRRWVVERTFAWLK-RFRRLATRYEKLASSFLAFVHLACIV   84 (88)
T ss_pred             ccCccchhhhccceehhhhhHHHH-HcCccccccccCHHHHHHHHHHHHHH
Confidence            467788899999999999999999 69999887776555544444444443

>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere

Probab=93.86  E-value=0.019  Score=43.93  Aligned_cols=42  Identities=24%  Similarity=0.540  Sum_probs=31.5

Q ss_pred             CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521          227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~  269 (524)
                      |..++.++++.+ +..+-.|.+..+||..|||+.|||+.++..
T Consensus         4 R~~LTl~eK~~i-I~~~e~g~s~~~ia~~fgv~~sTv~~I~K~   45 (53)
T PF04218_consen    4 RKSLTLEEKLEI-IKRLEEGESKRDIAREFGVSRSTVSTILKN   45 (53)
T ss_dssp             SSS--HHHHHHH-HHHHHCTT-HHHHHHHHT--CCHHHHHHHC
T ss_pred             CccCCHHHHHHH-HHHHHcCCCHHHHHHHhCCCHHHHHHHHHh
Confidence            568899999887 556788999999999999999999988653

Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.

>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=92.96  E-value=0.055  Score=40.34  Aligned_cols=45  Identities=20%  Similarity=0.390  Sum_probs=37.4

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI  274 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI  274 (524)
                      .+|++++-.+.++| -.|.++.++|..+|+|.+||+++..+...-|
T Consensus         4 ~L~~~er~vi~~~y-~~~~t~~eIa~~lg~s~~~V~~~~~~al~kL   48 (50)
T PF04545_consen    4 QLPPREREVIRLRY-FEGLTLEEIAERLGISRSTVRRILKRALKKL   48 (50)
T ss_dssp             TS-HHHHHHHHHHH-TST-SHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHh-cCCCCHHHHHHHHCCcHHHHHHHHHHHHHHh
Confidence            57899999998888 6788999999999999999999988766544

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=92.79  E-value=0.025  Score=41.59  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~  269 (524)
                      .++.+ ++.-++..+..|.+..+||..||||++||.|++.+
T Consensus         5 ~~~~~-~~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~~   44 (45)
T PF02796_consen    5 KLSKE-QIEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLNK   44 (45)
T ss_dssp             SSSHC-CHHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred             CCCHH-HHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhc
Confidence            34443 56666778899999999999999999999998753

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=92.73  E-value=0.028  Score=41.22  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=22.7

Q ss_pred             CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521          228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~  269 (524)
                      ..++.+++..+.-+ +..|.+++.||..+|+|+|||++.+.+
T Consensus         3 ~~Lt~~eR~~I~~l-~~~G~s~~~IA~~lg~s~sTV~relkR   43 (44)
T PF13936_consen    3 KHLTPEERNQIEAL-LEQGMSIREIAKRLGRSRSTVSRELKR   43 (44)
T ss_dssp             ---------HHHHH-HCS---HHHHHHHTT--HHHHHHHHHH
T ss_pred             cchhhhHHHHHHHH-HHcCCCHHHHHHHHCcCcHHHHHHHhc
Confidence            35677777776643 689999999999999999999998764

>PF13518 HTH_28: Helix-turn-helix domain

Probab=88.96  E-value=0.14  Score=38.06  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          235 RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       235 rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      ++.+...++ .|.++..++..||||.+||.+++..+-.
T Consensus         2 r~~iv~~~~-~g~s~~~~a~~~gis~~tv~~w~~~y~~   38 (52)
T PF13518_consen    2 RLQIVELYL-EGESVREIAREFGISRSTVYRWIKRYRE   38 (52)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHCCCHhHHHHHHHHHHh
Confidence            455666666 6779999999999999999998877654

>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C

Probab=88.75  E-value=0.074  Score=39.46  Aligned_cols=37  Identities=24%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             hhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521          234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC  271 (524)
Q Consensus       234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~  271 (524)
                      .++.+ |..+..|.+.+.++..+|||.+||++++.++.
T Consensus         6 ~R~~i-i~l~~~G~s~~~ia~~lgvs~~Tv~~w~kr~~   42 (50)
T PF13384_consen    6 RRAQI-IRLLREGWSIREIAKRLGVSRSTVYRWIKRYR   42 (50)
T ss_dssp             ----H-HHHHHHT--HHHHHHHHTS-HHHHHHHHT---
T ss_pred             HHHHH-HHHHHCCCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence            34443 33344499999999999999999999988753

>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D

Probab=88.56  E-value=0.1  Score=43.15  Aligned_cols=43  Identities=30%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             hhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          236 VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       236 L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      +-++-+.+.+..+.+..|..||||+||||+=+.+=+..|...|
T Consensus         9 i~i~~yIi~~~aTVR~~Ak~FGvSKSTVHkDvteRL~~in~~L   51 (82)
T PF12116_consen    9 IEIANYIIETKATVRQAAKVFGVSKSTVHKDVTERLPKINPEL   51 (82)
T ss_dssp             HHHHHHHHHH---HHHHHHHHTS-HHHHHHHHTTHHHHH-HHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHCCcHHHHHHHHHHHHHhcCHHH
Confidence            4456677889999999999999999999998887666666544

It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.49  E-value=0.28  Score=36.95  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      .+|+.++.++.|.|+ .|.++.++|..+|+|.+||...+.+...
T Consensus        10 ~L~~~~r~i~~l~~~-~g~s~~eIa~~l~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   10 QLPERQREIFLLRYF-QGMSYAEIAEILGISESTVKRRLRRARK   52 (54)
T ss_dssp             CS-HHHHHHHHHHHT-S---HHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH-HCcCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence            578888888777665 6899999999999999999888776543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>smart00351 PAX Paired Box domain

Probab=86.95  E-value=0.28  Score=44.09  Aligned_cols=44  Identities=11%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      .+++.+.+.-+.+.+. .|.+.+.||..||||.+||++++.++-.
T Consensus        16 ~~~s~~~R~riv~~~~-~G~s~~~iA~~~gvs~~tV~kwi~r~~~   59 (125)
T smart00351       16 RPLPDEERQRIVELAQ-NGVRPCDISRQLCVSHGCVSKILGRYYE   59 (125)
T ss_pred             CCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4688888888877664 8999999999999999999999888643

>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)

Probab=86.71  E-value=0.94  Score=36.86  Aligned_cols=46  Identities=26%  Similarity=0.313  Sum_probs=40.1

Q ss_pred             CCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          226 LRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       226 ~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      ++..++..+-|-..|+.|.+|+..+.|-..|| +.+||++.+.+...
T Consensus        21 ~~~~~~~R~v~~ail~~lrtG~~Wr~LP~~fg-~~~tv~~~f~rW~~   66 (75)
T PF13340_consen   21 GRPRIDLREVLNAILYVLRTGCPWRDLPEDFG-PWSTVYRRFRRWSR   66 (75)
T ss_pred             CCCccchHHHHhcccccceecceecccchhcc-CcCcHHHHHHHHHH
Confidence            45678888989999999999999999999999 88899888877543

>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia

Probab=86.33  E-value=0.47  Score=33.46  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=17.3

Q ss_pred             CCHhhHHHHcCCCHHHHHHHHH
Q 041521          192 FPEEEFWRDFRMSKATFEMICE  213 (524)
Q Consensus       192 ~~d~~F~~~fRmSr~tF~~Lv~  213 (524)
                      ++|++|...|+|+++.|..|-.
T Consensus         2 Lsd~dF~~vFgm~~~eF~~lP~   23 (36)
T PF02209_consen    2 LSDEDFEKVFGMSREEFYKLPK   23 (36)
T ss_dssp             S-HHHHHHHHSS-HHHHHHS-H
T ss_pred             cCHHHHHHHHCCCHHHHHHChH
Confidence            5799999999999999998744

The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....

>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481

Probab=85.51  E-value=0.4  Score=40.35  Aligned_cols=47  Identities=17%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             CCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521          225 MLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC  271 (524)
Q Consensus       225 ~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~  271 (524)
                      .....+++..++.++-..+..|.+...++..||||..|+++++.++-
T Consensus         4 H~nA~Lt~~gR~~lv~~vv~~g~~~a~aA~~~gVS~~Ta~kW~~Ryr   50 (85)
T PF13011_consen    4 HKNARLTPRGRLRLVRRVVEQGWPVAHAAAEFGVSRRTAYKWLARYR   50 (85)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999877653

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=84.55  E-value=0.71  Score=49.36  Aligned_cols=129  Identities=13%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             ccccCCCccchhhc----cC---ccccceehhhhhhHHHHHhhcccccccCcchHHHHHHHhhhccccCCCccccCCcce
Q 041521          242 RLATGEPLRVVSKR----FG---LGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEFQGISGIPNVGGSMYTT  314 (524)
Q Consensus       242 ~LatG~s~~~la~~----Fg---iS~STvsriv~~v~~aI~~~L~~~~I~~P~~ee~~~i~~~F~~~~gfP~~vGaIDgT  314 (524)
                      .++.|.+.++++..    +|   +|++|||+++.++...+... ..+                  ...+.|-++-.|||+
T Consensus       110 ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~~w-~~R------------------~L~~~~y~~l~iD~~  170 (381)
T PF00872_consen  110 LYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVEAW-RNR------------------PLESEPYPYLWIDGT  170 (381)
T ss_pred             hhccccccccccchhhhhhcccccCchhhhhhhhhhhhhHHHH-hhh------------------ccccccccceeeeee
Confidence            35566666655543    45   89999999887765544331 110                  111233357789999


Q ss_pred             eeeEecCCCccccccccccccccCCCCccccccccccCCCc--eeeecCCCCCCCCChHHHHhHHHHhhh-hccccceEE
Q 041521          315 HIPIIAPKISVASYFNKRHTERNQKTSYSITVQGVVDTKGV--FTDVCIGWPGSMPDDQVLERSALFQRA-DRGLLKDVW  391 (524)
Q Consensus       315 hIpI~~P~~~~~~y~n~~~~~rn~K~~~Si~vq~v~D~~g~--fi~v~~g~pGS~hDs~V~~~S~L~~~l-~~~~~~g~~  391 (524)
                      |+.+..-.               .-..-++.+-.-+|.+|+  ++.+.++   ..-....|.  .+...| ++|+.....
T Consensus       171 ~~kvr~~~---------------~~~~~~~~v~iGi~~dG~r~vLg~~~~---~~Es~~~W~--~~l~~L~~RGl~~~~l  230 (381)
T PF00872_consen  171 YFKVREDG---------------RVVKKAVYVAIGIDEDGRREVLGFWVG---DRESAASWR--EFLQDLKERGLKDILL  230 (381)
T ss_pred             eccccccc---------------ccccchhhhhhhhhcccccceeeeecc---cCCccCEee--ecchhhhhccccccce
Confidence            99986210               011123444455677775  6665554   322333344  333344 567767788


Q ss_pred             EEcccCCCCccccccccc
Q 041521          392 IVGNSGYPLMDWVMVPYT  409 (524)
Q Consensus       392 lLGD~gYpl~~~LmtPy~  409 (524)
                      +++|.+=.+..-+-.-|+
T Consensus       231 vv~Dg~~gl~~ai~~~fp  248 (381)
T PF00872_consen  231 VVSDGHKGLKEAIREVFP  248 (381)
T ss_pred             eecccccccccccccccc
Confidence            999977666666555554

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella

Probab=84.48  E-value=0.4  Score=31.40  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=27.6

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhh
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLV  267 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv  267 (524)
                      .++.+++..+... +..|.++..++..||++.+|+++++
T Consensus         5 ~~~~~~~~~i~~~-~~~~~s~~~ia~~~~is~~tv~~~~   42 (42)
T cd00569           5 KLTPEQIEEARRL-LAAGESVAEIARRLGVSRSTLYRYL   42 (42)
T ss_pred             cCCHHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHhC
Confidence            4555555444433 4577899999999999999998763

The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D

>cd00131 PAX Paired Box domain

Probab=84.34  E-value=0.49  Score=42.77  Aligned_cols=45  Identities=11%  Similarity=0.134  Sum_probs=37.9

Q ss_pred             CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      ..++|.+.+.-|.+.+ ..|.+.+.+|.+||||.+||.+++.++-.
T Consensus        15 ~~~lS~d~R~rIv~~~-~~G~s~~~iA~~~~Vs~~tV~r~i~r~~e   59 (128)
T cd00131          15 GRPLPDSIRQRIVELA-QSGIRPCDISRQLRVSHGCVSKILNRYYE   59 (128)
T ss_pred             CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3578888887777665 68999999999999999999999887654

>smart00153 VHP Villin headpiece domain

Probab=83.85  E-value=0.82  Score=32.23  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             CCHhhHHHHcCCCHHHHHHHH
Q 041521          192 FPEEEFWRDFRMSKATFEMIC  212 (524)
Q Consensus       192 ~~d~~F~~~fRmSr~tF~~Lv  212 (524)
                      ++|++|...|+||++.|..|=
T Consensus         2 LsdeeF~~vfgmsr~eF~~LP   22 (36)
T smart00153        2 LSDEDFEEVFGMTREEFYKLP   22 (36)
T ss_pred             CCHHHHHHHHCCCHHHHHhCc
Confidence            579999999999999999873

>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon

Probab=83.67  E-value=0.57  Score=34.63  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI  274 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI  274 (524)
                      .++..++-.+.  ++..|.++.+++..+|+|.+||.+++.++...+
T Consensus         3 ~l~~~e~~i~~--~~~~g~s~~eia~~l~is~~tv~~~~~~~~~kl   46 (58)
T smart00421        3 SLTPREREVLR--LLAEGLTNKEIAERLGISEKTVKTHLSNIMRKL   46 (58)
T ss_pred             CCCHHHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            35666655333  357899999999999999999999988876544

lux regulon (activates the bioluminescence operon

>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=81.96  E-value=0.42  Score=43.87  Aligned_cols=43  Identities=28%  Similarity=0.265  Sum_probs=37.2

Q ss_pred             CChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          230 IPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       230 l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      .+.+.+.+++..++..|.+.+.+|.+||||.+||.+++.+.=+
T Consensus         5 ~s~~~R~~~~~~~~~~G~S~re~Ak~~gvs~sTvy~wv~r~~e   47 (138)
T COG3415           5 FSNDLRERVVDAVVGEGLSCREAAKRFGVSISTVYRWVRRYRE   47 (138)
T ss_pred             hhHHHHHHHHHHHHHcCccHHHHHHHhCccHHHHHHHHHHhcc
Confidence            4556777888899999999999999999999999999887643

>PRK09413 IS2 repressor TnpA; Reviewed

Probab=81.61  E-value=0.75  Score=41.02  Aligned_cols=46  Identities=13%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      ++..+.+.++-++...+..|.++.+++..||||.+|+++++.++-.
T Consensus        10 rr~ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~   55 (121)
T PRK09413         10 RRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQE   55 (121)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhh
Confidence            4678999999999999999999999999999999999999888643

>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []

Probab=81.38  E-value=0.36  Score=35.64  Aligned_cols=37  Identities=16%  Similarity=0.297  Sum_probs=27.2

Q ss_pred             hhhhhhhhhccccC-CCccchhhccCccccceehhhhh
Q 041521          233 RQRVAVCVWRLATG-EPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       233 e~rL~i~L~~LatG-~s~~~la~~FgiS~STvsriv~~  269 (524)
                      ++.+..+|-.+..| .+++..+..|||+.+|+++.++.
T Consensus         2 ee~l~~Ai~~v~~g~~S~r~AA~~ygVp~sTL~~r~~g   39 (45)
T PF05225_consen    2 EEDLQKAIEAVKNGKMSIRKAAKKYGVPRSTLRRRLRG   39 (45)
T ss_dssp             HHHHHHHHHHHHTTSS-HHHHHHHHT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHcC
Confidence            45666677777788 99999999999999999877653

In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.

>PRK04217 hypothetical protein; Provisional

Probab=81.18  E-value=0.81  Score=40.41  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      ..++.+++-++.|+ .-.|.++.+||..+|||.+||.+++.+....|.+.+
T Consensus        41 ~~Lt~eereai~l~-~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L   90 (110)
T PRK04217         41 IFMTYEEFEALRLV-DYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQML   90 (110)
T ss_pred             ccCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            46777787555443 347889999999999999999999998877776644

>PRK09639 RNA polymerase sigma factor SigX; Provisional

Probab=80.33  E-value=0.92  Score=41.77  Aligned_cols=48  Identities=10%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .+|++++-++.|.+  .|.++.+||..+|+|.+||...+.+....|...+
T Consensus       112 ~L~~~~r~il~l~~--~g~s~~eIA~~lgis~~tV~~~i~ra~~~Lr~~l  159 (166)
T PRK09639        112 KMTERDRTVLLLRF--SGYSYKEIAEALGIKESSVGTTLARAKKKFRKIY  159 (166)
T ss_pred             cCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            57888998888877  9999999999999999999999888877776643

>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs)

Probab=80.11  E-value=0.85  Score=32.95  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      .+++.++-++.+.++ .|.++.+++..+|++.+||.+++.+...
T Consensus        10 ~l~~~~~~~~~~~~~-~~~~~~~ia~~~~~s~~~i~~~~~~~~~   52 (55)
T cd06171          10 KLPEREREVILLRFG-EGLSYEEIAEILGISRSTVRQRLHRALK   52 (55)
T ss_pred             hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            355666665555554 8899999999999999999998877543

A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
1tc3_C	51	Protein (TC3 transposase); DNA binding, helix-turn	93.14
2p7v_B	68	Sigma-70, RNA polymerase sigma factor RPOD; RSD, r	91.43
2glo_A	59	Brinker CG9653-PA; protein-DNA complex, helix-turn	90.49
2w7n_A	101	TRFB transcriptional repressor protein; INCP, plas	90.17
2jn6_A	97	Protein CGL2762, transposase; GFT PSI-2, protein s	90.16
2o8x_A	70	Probable RNA polymerase sigma-C factor; promoter r	89.71
1ku3_A	73	Sigma factor SIGA; helix-turn-helix, transcription	89.21
1jko_C	52	HIN recombinase, DNA-invertase HIN; water-mediated	88.7
1tty_A	87	Sigma-A, RNA polymerase sigma factor RPOD; helix-t	88.57
1wy3_A	35	Villin; structural protein; HET: NLE; 0.95A {Synth	86.97
3hug_A	92	RNA polymerase sigma factor; ECF sigma factor, zin	86.35
1und_A	37	Advillin, P92; actin binding, F-actin binding, cyt	85.6
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	85.47
3t72_q	99	RNA polymerase sigma factor RPOD, DNA-directed RN	84.1
1u78_A	141	TC3 transposase, transposable element TC3 transpos	82.01
2elh_A	87	CG11849-PA, LD40883P; structural genomics, NPPSFA,	81.5
1fse_A	74	GERE; helix-turn-helix DNA-binding protein transcr	80.8

>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2

Probab=93.14  E-value=0.02  Score=40.19  Aligned_cols=41  Identities=12%  Similarity=0.110  Sum_probs=32.7

Q ss_pred             CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521          228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~  269 (524)
                      ..++.+++..+... +..|.++..||..+|||.+||.+++.+
T Consensus         4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~   44 (51)
T 1tc3_C            4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD   44 (51)
T ss_dssp             CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence            46777777555444 468999999999999999999988764

>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2

Probab=91.43  E-value=0.082  Score=40.59  Aligned_cols=49  Identities=12%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             CCChhhhhhhhhhc-c--ccCCCccchhhccCccccceehhhhhhHHHHHhh
Q 041521          229 AIPVRQRVAVCVWR-L--ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV  277 (524)
Q Consensus       229 ~l~~e~rL~i~L~~-L--atG~s~~~la~~FgiS~STvsriv~~v~~aI~~~  277 (524)
                      .+|+.++-.+.|++ |  ..|.++.+||..+|+|.+||...+.+....|...
T Consensus         5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~   56 (68)
T 2p7v_B            5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP   56 (68)
T ss_dssp             CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred             cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            58899998888888 3  5899999999999999999999988877766553

>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}

Probab=90.49  E-value=0.06  Score=40.41  Aligned_cols=43  Identities=9%  Similarity=0.142  Sum_probs=36.6

Q ss_pred             CCCCChhhhhhhhhhccccCCC----ccchhhccCccccceehhhhhh
Q 041521          227 RDAIPVRQRVAVCVWRLATGEP----LRVVSKRFGLGISTCHKLVLEV  270 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~LatG~s----~~~la~~FgiS~STvsriv~~v  270 (524)
                      +...+++.++.+ +.++..|.+    ...++..|||+.+|+.+++...
T Consensus         3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~   49 (59)
T 2glo_A            3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE   49 (59)
T ss_dssp             CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred             CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence            456788999888 777888888    9999999999999999887653

>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}

Probab=90.17  E-value=0.096  Score=44.33  Aligned_cols=59  Identities=22%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521          202 RMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI  274 (524)
Q Consensus       202 RmSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI  274 (524)
                      |||.+.|+.++..++             ++ +..+-++=.||-.|.++.+|+..+|+|+++|++++.+.-...
T Consensus         4 rmT~~eFe~~~~~l~-------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~   62 (101)
T 2w7n_A            4 RLTESQFQEAIQGLE-------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF   62 (101)
T ss_dssp             CCCHHHHHHHHTTCC-------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHccCC-------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            799999999875441             11 233455667788999999999999999999999998866553

>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19

Probab=90.16  E-value=0.087  Score=43.34  Aligned_cols=44  Identities=9%  Similarity=0.190  Sum_probs=37.5

Q ss_pred             CCCCChhhhhhhhhhcccc-CCCccchhhccCccccceehhhhhh
Q 041521          227 RDAIPVRQRVAVCVWRLAT-GEPLRVVSKRFGLGISTCHKLVLEV  270 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~Lat-G~s~~~la~~FgiS~STvsriv~~v  270 (524)
                      ++..+++.++.+.-.++.. |.+...++..||||.+|+++++...
T Consensus         3 r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~   47 (97)
T 2jn6_A            3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY   47 (97)
T ss_dssp             CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence            3567888888887777777 9999999999999999999987654

>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}

Probab=89.71  E-value=0.17  Score=38.46  Aligned_cols=49  Identities=16%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .+|+.++-.+.|++ ..|.++.+||..+|+|.+||.+.+.+....|...+
T Consensus        15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l   63 (70)
T 2o8x_A           15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLADA   63 (70)
T ss_dssp             SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred             hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence            57888887777665 46899999999999999999999988877776543

>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*

Probab=89.21  E-value=0.15  Score=39.62  Aligned_cols=48  Identities=13%  Similarity=0.176  Sum_probs=41.7

Q ss_pred             CCCChhhhhhhhhhcc-c--cCCCccchhhccCccccceehhhhhhHHHHH
Q 041521          228 DAIPVRQRVAVCVWRL-A--TGEPLRVVSKRFGLGISTCHKLVLEVCSAIK  275 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~L-a--tG~s~~~la~~FgiS~STvsriv~~v~~aI~  275 (524)
                      ..+|+.++-.+.|+|+ .  .|.++.+||..+|+|.+||...+.+....|.
T Consensus         9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr   59 (73)
T 1ku3_A            9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK   59 (73)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3689999988888874 3  7899999999999999999999988887776

>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C

Probab=88.70  E-value=0.091  Score=37.20  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~  269 (524)
                      .++.++.. ..+..+..|.+...|+..+|||.+||++++.+
T Consensus         5 ~~~~~~~~-~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~   44 (52)
T 1jko_C            5 AINKHEQE-QISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA   44 (52)
T ss_dssp             SSCTTHHH-HHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred             CCCHHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence            44444432 22333567899999999999999999988764

>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2

Probab=88.57  E-value=0.12  Score=41.84  Aligned_cols=50  Identities=10%  Similarity=0.174  Sum_probs=42.3

Q ss_pred             CCChhhhhhhhhhc-cc--cCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWR-LA--TGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~-La--tG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .+|+.++-.+.|+| |.  .|.++.+||..+|+|.+||..++.+....|...+
T Consensus        18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l   70 (87)
T 1tty_A           18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS   70 (87)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred             hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            57889998888887 45  7899999999999999999999888777765543

>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*

Probab=86.97  E-value=0.31  Score=33.15  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             CCHhhHHHHcCCCHHHHHHHH
Q 041521          192 FPEEEFWRDFRMSKATFEMIC  212 (524)
Q Consensus       192 ~~d~~F~~~fRmSr~tF~~Lv  212 (524)
                      ++|++|...|+|+++.|..|-
T Consensus         1 Lsd~dF~~vFgmsr~eF~~LP   21 (35)
T 1wy3_A            1 LSDEDFKAVFGMTRSAFANLP   21 (35)
T ss_dssp             CCHHHHHHHHSSCHHHHHHSC
T ss_pred             CCHHHHHHHHCCCHHHHHHCc
Confidence            579999999999999999873

>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}

Probab=86.35  E-value=0.25  Score=40.23  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .+|+.++-++.|+|+ .|.++..||..+|+|.+||...+.+....|...+
T Consensus        37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l   85 (92)
T 3hug_A           37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL   85 (92)
T ss_dssp             TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            578888887777654 7899999999999999999999888877776544

>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1

Probab=85.60  E-value=0.4  Score=33.03  Aligned_cols=21  Identities=19%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             CCHhhHHHHcCCCHHHHHHHH
Q 041521          192 FPEEEFWRDFRMSKATFEMIC  212 (524)
Q Consensus       192 ~~d~~F~~~fRmSr~tF~~Lv  212 (524)
                      ++|++|...|+|+++.|..|-
T Consensus         3 Lsd~dF~~vFgmsr~eF~~LP   23 (37)
T 1und_A            3 LSEQDFVSVFGITRGQFAALP   23 (37)
T ss_dssp             CCHHHHHHHHSSCHHHHHHSC
T ss_pred             CCHHHHHHHHCcCHHHHHHCh
Confidence            589999999999999999863

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=85.47  E-value=0.16  Score=42.98  Aligned_cols=43  Identities=21%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             CCChhhhhhhhhhc-----cccC-CCccchhhccCccccceehhhhhhHH
Q 041521          229 AIPVRQRVAVCVWR-----LATG-EPLRVVSKRFGLGISTCHKLVLEVCS  272 (524)
Q Consensus       229 ~l~~e~rL~i~L~~-----LatG-~s~~~la~~FgiS~STvsriv~~v~~  272 (524)
                      -+++.++-++.+++     |..| .+|+.|+...|+|.|||+|+ .+.+.
T Consensus        35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~   83 (101)
T 1jhg_A           35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLK   83 (101)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence            46677775555543     3467 99999999999999999998 54443

>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B

Probab=84.10  E-value=0.27  Score=41.26  Aligned_cols=49  Identities=12%  Similarity=0.132  Sum_probs=42.5

Q ss_pred             CCChhhhhhhhhhcc---ccCCCccchhhccCccccceehhhhhhHHHHHhh
Q 041521          229 AIPVRQRVAVCVWRL---ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV  277 (524)
Q Consensus       229 ~l~~e~rL~i~L~~L---atG~s~~~la~~FgiS~STvsriv~~v~~aI~~~  277 (524)
                      .+|+.++-.+.|+|+   ..|.++.+||..+|+|.+||..+..+....|...
T Consensus        19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~   70 (99)
T 3t72_q           19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP   70 (99)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            588999999999885   3789999999999999999999988887777654

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=82.01  E-value=1.4  Score=37.77  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             CCCHhhHHHHcCCCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccC--ccccceehhhh
Q 041521          191 DFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFG--LGISTCHKLVL  268 (524)
Q Consensus       191 ~~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~Fg--iS~STvsriv~  268 (524)
                      .++-.+.-+.+++++.|+...+............++...+++++...+.-.....+.+...|+..+|  +|.+||++++.
T Consensus        22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~  101 (141)
T 1u78_A           22 NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK  101 (141)
T ss_dssp             TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence            4677888899999999999888765543211122233456666553332222223478899999998  78889998877


Q ss_pred             h
Q 041521          269 E  269 (524)
Q Consensus       269 ~  269 (524)
                      +
T Consensus       102 ~  102 (141)
T 1u78_A          102 R  102 (141)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}

Probab=81.50  E-value=0.38  Score=38.87  Aligned_cols=44  Identities=16%  Similarity=0.136  Sum_probs=34.3

Q ss_pred             CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521          227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC  271 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~  271 (524)
                      +...+.+.+..+.-.+ ..|.+...|+..||||.+|+++++.+.-
T Consensus        20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~   63 (87)
T 2elh_A           20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNED   63 (87)
T ss_dssp             CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3467788776555444 5789999999999999999999876543

>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2

Probab=80.80  E-value=0.62  Score=35.60  Aligned_cols=46  Identities=9%  Similarity=0.141  Sum_probs=37.7

Q ss_pred             CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521          228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK  275 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~  275 (524)
                      ..+++.++-.+.+  +..|.++.++|..+|+|.+||...+.+....+.
T Consensus        10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~   55 (74)
T 1fse_A           10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG   55 (74)
T ss_dssp             CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence            4678888766666  378999999999999999999998887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	524
d1ijwc_	47	HIN recombinase (DNA-binding domain) {Synthetic}	94.51
d1hlva1	66	DNA-binding domain of centromere binding protein B	91.08
d1rp3a2	71	Sigma factor sigma-28 (FliA) {Aquifex aeolicus [Ta	90.91
d1or7a1	68	SigmaE factor (RpoE) {Escherichia coli [TaxId: 562	88.75
d1unda_	36	Advillin {Human (Homo sapiens) [TaxId: 9606]}	85.5
d1yu8x1	35	Villin {Chicken (Gallus gallus) [TaxId: 9031]}	84.82
d1s7oa_	106	Hypothetical protein SPy1201 {Streptococcus pyogen	83.75
d2jn6a1	89	Uncharacterized protein Cgl2762 {Corynebacterium g	83.45

>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=94.51  E-value=0.0031  Score=44.31  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             CCCChhhhhhhhhhccccCCCccchhhccCccccceehhh
Q 041521          228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLV  267 (524)
Q Consensus       228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv  267 (524)
                      +.++. +++..+...++.|.+..+|+..||||.+|++|++
T Consensus         4 ~~lt~-~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~   42 (47)
T d1ijwc_           4 RAINK-HEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF   42 (47)
T ss_dssp             CSSCH-HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred             CcCCH-HHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHhhC
Confidence            45554 6777888889999999999999999999999986

>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.025  Score=42.27  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             CCCCCChhhhhhhhhhccccC-CCccchhhccCccccceehhhhh
Q 041521          226 LRDAIPVRQRVAVCVWRLATG-EPLRVVSKRFGLGISTCHKLVLE  269 (524)
Q Consensus       226 ~r~~l~~e~rL~i~L~~LatG-~s~~~la~~FgiS~STvsriv~~  269 (524)
                      .|..++.++++-|.-++=..+ .+..+||..|||+.|||+.++..
T Consensus         4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn   48 (66)
T d1hlva1           4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN   48 (66)
T ss_dssp             SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred             ccccCCHHHHHHHHHHHHcCCcchHHHHHHHhCCChhHHHHHHHH
Confidence            467899999998855444433 46889999999999999998765

>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: Sigma factor sigma-28 (FliA)
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.91  E-value=0.044  Score=40.68  Aligned_cols=49  Identities=16%  Similarity=0.298  Sum_probs=42.1

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .+|+.++-++.|+|+ .|.++.+||..+|+|.+||...+.+....|...|
T Consensus        21 ~L~~~~r~v~~l~~~-~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~L   69 (71)
T d1rp3a2          21 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML   69 (71)
T ss_dssp             TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh-HhCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc
Confidence            588999988888776 6899999999999999999999988887776543

>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: SigmaE factor (RpoE)
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.079  Score=39.11  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521          229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL  278 (524)
Q Consensus       229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L  278 (524)
                      .+|+.++-.+.|+|+ .|.++.+||..+|+|.+||...+.+....|...|
T Consensus        18 ~Lp~~~r~v~~l~~~-~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l   66 (68)
T d1or7a1          18 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV   66 (68)
T ss_dssp             HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-hCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence            478888988888776 5788999999999999999999888777776654

>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Advillin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.19  Score=32.75  Aligned_cols=20  Identities=20%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             CCHhhHHHHcCCCHHHHHHH
Q 041521          192 FPEEEFWRDFRMSKATFEMI  211 (524)
Q Consensus       192 ~~d~~F~~~fRmSr~tF~~L  211 (524)
                      ++|++|...|+||++.|..|
T Consensus         2 Lsd~dF~~vFgmsr~eF~~L   21 (36)
T d1unda_           2 LSEQDFVSVFGITRGQFAAL   21 (36)
T ss_dssp             CCHHHHHHHHSSCHHHHHHS
T ss_pred             CCHHHHHHHHCcCHHHHHHC
Confidence            58999999999999999986

>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Villin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.82  E-value=0.17  Score=32.85  Aligned_cols=20  Identities=25%  Similarity=0.587  Sum_probs=18.3

Q ss_pred             CCHhhHHHHcCCCHHHHHHH
Q 041521          192 FPEEEFWRDFRMSKATFEMI  211 (524)
Q Consensus       192 ~~d~~F~~~fRmSr~tF~~L  211 (524)
                      ++|++|...|+||++.|..|
T Consensus         1 Lsd~dF~~vfgmsr~eF~~L   20 (35)
T d1yu8x1           1 LSDEDFKAVFGMTRSAFANL   20 (35)
T ss_dssp             SCHHHHHHHHSSCHHHHHTS
T ss_pred             CCHHHHHHHHCCCHHHHHHC
Confidence            47899999999999999876

>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: YlxM/p13-like
domain: Hypothetical protein SPy1201
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.75  E-value=0.16  Score=41.28  Aligned_cols=46  Identities=11%  Similarity=0.150  Sum_probs=40.7

Q ss_pred             CChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHh
Q 041521          230 IPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKT  276 (524)
Q Consensus       230 l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~  276 (524)
                      +|+.++-++.|+|+ .|.++..||..+|||.+||+..+++....|.+
T Consensus        17 Lp~~qR~v~~L~y~-~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~   62 (106)
T d1s7oa_          17 LTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILET   62 (106)
T ss_dssp             SCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            78889988888765 68999999999999999999999998887765

>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Cgl2762-like
domain: Uncharacterized protein Cgl2762
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=83.45  E-value=0.17  Score=39.44  Aligned_cols=44  Identities=9%  Similarity=0.190  Sum_probs=35.9

Q ss_pred             CCCCChhhhhhhhhhcccc-CCCccchhhccCccccceehhhhhh
Q 041521          227 RDAIPVRQRVAVCVWRLAT-GEPLRVVSKRFGLGISTCHKLVLEV  270 (524)
Q Consensus       227 r~~l~~e~rL~i~L~~Lat-G~s~~~la~~FgiS~STvsriv~~v  270 (524)
                      ++..|++-+.-++=.++.+ |.++..|+..+|||.+|+++++.+.
T Consensus         3 rk~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~~   47 (89)
T d2jn6a1           3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY   47 (89)
T ss_dssp             CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCcHHHHHHHHCCCHHHHHHHHHHH
Confidence            4467888887776556654 8999999999999999999998764