Citrus Sinensis ID: 041526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKWSSDDEPPIEVKH
Secondary Structure (PSIPRED)
ccccccccccEEEEEEHHHHHHHHHHcccccccHHHHHHcccccEEcccccHHHHHHHHHHcccEEEEEEcccccccEEEEHHHHHHHHHcccccccccHHHHHHHcccEEEEcccEEEEEEEccHHHHHHHcccccccccccccHHHHHHHHcccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcccccccccHHHHHHcccHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEHHHHHHHHHccccccccccHHHHcccccEccccccHHHHHHHHHHcccEEEEEEEcccccccEEEHHHHHHHHHHccHccccccccccccccccEEccccEEEEEEEEEHHHHHHHccccccccccccHHHHHHHHHHccccccccEEEEccEEEEEEccccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHccHHHHHEcccccccccEEEcc
Coil and Loop (DISEMBL)
VPVFEQRIDNIVGIAYAMDLLDYVqkgellestkvadmahkpayfvpdsMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEifdesdskeeIQKKTGYIVMRaegiydvdantsidQLSEdlnikmpeghqyetVSGFvceafgyiprtgESIKVVVEKenqeendedtengsdrqdskekHQIYKLEILAGNARKVSAVRFERinndeakldaKEVTRMVPKIMkrkwssddeppievkh
Flexible Loop (DISEMBL)
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVgeifdesdskeeiqKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEkenqeendedtengsdrqdskekHQIYKLeilagnarkvsavrferinndeakldakevtrmvpkimkrkwssddeppievkh
Low Complexity Region (SEG)
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIkvvvekenqeendedtenGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKWSSDDEPPIEVKH
Disordered region (IsUnstruct)
****EQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE******IQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVV**************************IYKLEILAGNARKVSAVRFERI************************************
Disordered Region (DISOPRED)
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVR****************************************
Disordered Region (DISEMBL)
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVE***********************HQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRK*************
Disordered Region (DISPRO)
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKWSSDDEPP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKWSSDDEPPIEVKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q84R21	653	DUF21 domain-containing p	yes	no	0.968	0.373	0.828	1e-117
Q9LK65	661	Putative DUF21 domain-con	no	no	0.968	0.369	0.812	1e-108
Q54318	268	Hemolysin C OS=Treponema	no	no	0.603	0.567	0.359	3e-20
Q57368	299	Magnesium and cobalt effl	yes	no	0.575	0.484	0.341	2e-18
Q9CM13	300	Magnesium and cobalt effl	yes	no	0.619	0.52	0.357	3e-18
Q8K9C0	291	Magnesium and cobalt effl	yes	no	0.619	0.536	0.321	3e-18
Q9KTE3	291	Magnesium and cobalt effl	yes	no	0.619	0.536	0.363	1e-16
P67131	435	UPF0053 protein Mb2387c O	yes	no	0.623	0.360	0.337	2e-16
P67130	435	UPF0053 protein Rv2366c/M	yes	no	0.623	0.360	0.337	2e-16
Q89AC1	282	Magnesium and cobalt effl	yes	no	0.611	0.546	0.325	5e-16

>sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH2 PE=2 SV=2

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQRIDNIVGIAYAMDLLDYV KG+LLEST V DMAHKPA+FVPDSMSVWNLLREFR
Sbjct: 384 VPVFEQRIDNIVGIAYAMDLLDYVPKGKLLESTTVVDMAHKPAFFVPDSMSVWNLLREFR 443

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEGIYDV
Sbjct: 444 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIYDV 503

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSE+LNIKM EGHQYETVSGFVCEAFGYIP+TGES+ VV+EKEN EENDE  
Sbjct: 504 DANTSIDQLSEELNIKMAEGHQYETVSGFVCEAFGYIPKTGESVTVVLEKENWEENDEQD 563

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E   +RQD KEKHQIY+LEILAGNARKVSAVRFER+++ +   +A++V  MVPK + RKW
Sbjct: 564 EGKHERQDQKEKHQIYRLEILAGNARKVSAVRFERVSDMDQVSEARDVKNMVPKFV-RKW 622

Query: 241 SSDDE 245
           SS+++
Sbjct: 623 SSEED 627

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK65|Y3307_ARATH Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH1 PE=4 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/245 (81%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQRIDNIVGIAYAMDLLDYVQKG+LLEST V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 389 VPVFEQRIDNIVGIAYAMDLLDYVQKGDLLESTSVGDMAHKPAYFVPDSMSVWNLLREFR 448

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMR EGIYDV
Sbjct: 449 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRDEGIYDV 508

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSE+LN+KMPEG QYETVSGFVCEAFGYIP+TGES+KVV+EKE+ EE+ E+ 
Sbjct: 509 DANTSIDQLSEELNMKMPEGIQYETVSGFVCEAFGYIPKTGESVKVVLEKESWEEDGEEE 568

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E   +RQ+ KEK+QIY++EILAGNARKVSAVRFER+N+ +   +A +V  MVPK + RKW
Sbjct: 569 EGKQERQEPKEKNQIYRVEILAGNARKVSAVRFERVNDMDQVSEASDVKSMVPKFV-RKW 627

Query: 241 SSDDE 245
           SS+++
Sbjct: 628 SSEED 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q54318|HLYC_TREHY Hemolysin C OS=Treponema hyodysenteriae GN=tlyC PE=3 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 98/164 (59%), Gaps = 12/164 (7%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +PV++  ID+IVG+ Y  DL+D  +K   L+      + HKP  FVP S+S+  LL+ FR
Sbjct: 82  IPVYKDGIDDIVGVLYVKDLIDAEEKNFSLKK-----ILHKPL-FVPISISLMELLKNFR 135

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
            +++H+A+V++EYGG  G+V++EDV+E+I+G+I      ++E  ++   I    +G Y V
Sbjct: 136 EKQIHIAMVVDEYGGFSGIVSMEDVLEQIIGDI------RDEYDEEDEEIKSNDDGTYLV 189

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
           DA T ID  ++   +      + +TV GF+    G +P+  E I
Sbjct: 190 DARTRIDDFNKYEILPPIPDDEADTVGGFLFSYLGRLPKRNEDI 233

Bacterial hemolysins are exotoxins that attack blood cell membranes and cause cell rupture by mechanisms not clearly defined.

Treponema hyodysenteriae (taxid: 159)

>sp|Q57368|CORC_HAEIN Magnesium and cobalt efflux protein CorC OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=corC PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 13/158 (8%)

Query: 9   DNIVGIAYAMDLLDYVQKGELLESTKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHM 66
           DNIVGI +A DLL +++     E  +V D++   +P   VP+S  V  +L++FR  + HM
Sbjct: 113 DNIVGILHAKDLLKFLR-----EDAEVFDLSSLLRPVVIVPESKRVDRMLKDFRSERFHM 167

Query: 67  AVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSI 126
           A+V++E+G   G+VT+ED++E+IVG         E  +++   I   +   Y V A T I
Sbjct: 168 AIVVDEFGAVSGLVTIEDILEQIVG-----DIEDEFDEEEIADIRQLSRHTYAVRALTDI 222

Query: 127 DQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
           D  +   N    +  + +T+ G + + FGY+P+ GE I
Sbjct: 223 DDFNAQFNTDF-DDEEVDTIGGLIMQTFGYLPKRGEEI 259

Plays a role in the transport of magnesium and cobalt ions.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q9CM13|CORC_PASMU Magnesium and cobalt efflux protein CorC OS=Pasteurella multocida (strain Pm70) GN=corC PE=3 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 9/165 (5%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV     DNI GI +A DLL +++     E   +  +  +PA  VP+S  V  +L++FR 
Sbjct: 106 PVITDERDNIAGILHAKDLLRFLRSNA--EEFDLMPLL-RPAVIVPESKRVDRMLKDFRS 162

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
            + HMA+V++E+G   G+VT+ED++E+IVG+I DE D +E +      I   +   Y V 
Sbjct: 163 ERFHMAIVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEIVN-----IRQLSRHTYAVR 217

Query: 122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
           A T I+  ++  N    +  + +T+ G V +AFGY+P+ GE I +
Sbjct: 218 ALTDIEDFNQQFNTHFAD-EEVDTIGGVVMQAFGYLPKRGEEITI 261

Plays a role in the transport of magnesium and cobalt ions.

Pasteurella multocida (strain Pm70) (taxid: 272843)

>sp|Q8K9C0|CORC_BUCAP Magnesium and cobalt efflux protein CorC OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=corC PE=3 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 97/165 (58%), Gaps = 9/165 (5%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  + + G   A DLL +++  E  ++  + ++  + A  VP+S SV  +L+EFR+
Sbjct: 103 PVMSRDQNYVEGFLIAKDLLPFMKHPE--DAFCIKNIL-RSAVVVPESKSVDTMLKEFRL 159

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
           ++ HMA+V++E+G   G+VT+ED++E IVGEI DE D +E++      I    + I+ + 
Sbjct: 160 KRSHMAIVIDEFGAVSGLVTIEDILELIVGEIQDEYDDEEKVN-----IRKLKKCIFSIK 214

Query: 122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
           A T I + ++       +  + +T+ G V +AFG++P  G+ I +
Sbjct: 215 ALTEIKEFNDTFETNFSD-EEVDTIGGLVMKAFGHLPSRGDHINI 258

Plays a role in the transport of magnesium and cobalt ions.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

>sp|Q9KTE3|CORC_VIBCH Magnesium and cobalt efflux protein CorC OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=corC PE=3 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 9/165 (5%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  D++ GI  A DLL Y+  G       + ++  +PA  VP+S  V  LL+EFR 
Sbjct: 102 PVISEDKDHVEGILLAKDLLKYL--GSNCAPFNIQEVI-RPAVVVPESKRVDRLLKEFRE 158

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
            + HMA+V++E+GG  G+VT+ED++EEIVG+I  E +  +E QK    I   ++  + V 
Sbjct: 159 ERYHMAIVVDEFGGVSGLVTIEDILEEIVGDI--EDEFDDEEQKD---IRQLSKHTFSVK 213

Query: 122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
           A T+I+  +     K  +  + +TV G V  AFG++P  GE + +
Sbjct: 214 ALTTIEDFNHTFGTKFSD-EEVDTVGGLVMTAFGHLPARGEVVDI 257

Plays a role in the transport of magnesium and cobalt ions.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|P67131|Y2387_MYCBO UPF0053 protein Mb2387c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2387c PE=3 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLD--YVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLRE 58
           +PV  + +D+IVG+ Y  DL++  +       E+T    M  +PA FVPDS  +  LLRE
Sbjct: 234 IPVIGENVDDIVGVVYLKDLVEQTFCSTNGGRETTVARVM--RPAVFVPDSKPLDALLRE 291

Query: 59  FRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIY 118
            +  + HMA++++EYG   G+V++EDV+EEIVGEI DE D     Q +T  +    +  +
Sbjct: 292 MQRDRNHMALLVDEYGAIAGLVSIEDVLEEIVGEIADEYD-----QAETAPVEDLGDKRF 346

Query: 119 DVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
            V A   I+ + E   ++  +    +TV G +    G +P  G  +
Sbjct: 347 RVSARLPIEDVGELYGVEFDDDLDVDTVGGLLALELGRVPLPGAEV 392

Mycobacterium bovis (taxid: 1765)

>sp|P67130|Y2366_MYCTU UPF0053 protein Rv2366c/MT2435 OS=Mycobacterium tuberculosis GN=Rv2366c PE=3 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLD--YVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLRE 58
           +PV  + +D+IVG+ Y  DL++  +       E+T    M  +PA FVPDS  +  LLRE
Sbjct: 234 IPVIGENVDDIVGVVYLKDLVEQTFCSTNGGRETTVARVM--RPAVFVPDSKPLDALLRE 291

Query: 59  FRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIY 118
            +  + HMA++++EYG   G+V++EDV+EEIVGEI DE D     Q +T  +    +  +
Sbjct: 292 MQRDRNHMALLVDEYGAIAGLVSIEDVLEEIVGEIADEYD-----QAETAPVEDLGDKRF 346

Query: 119 DVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
            V A   I+ + E   ++  +    +TV G +    G +P  G  +
Sbjct: 347 RVSARLPIEDVGELYGVEFDDDLDVDTVGGLLALELGRVPLPGAEV 392

Mycobacterium tuberculosis (taxid: 1773)

>sp|Q89AC1|CORC_BUCBP Magnesium and cobalt efflux protein CorC OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=corC PE=3 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKG-ELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           PV  +  + + G     DLL +++   E+    K+     +PA  VP+S  V ++L+EFR
Sbjct: 103 PVMSENENYVEGFLITKDLLPFIKNNTEMFCIKKIL----RPAIVVPESKHVNHMLKEFR 158

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           + K HMA+V++E+G   G+VT+ED++E IVG I DE D   E +K    I    +  + +
Sbjct: 159 LTKNHMAIVIDEFGVVSGLVTIEDILELIVGNIEDEYD---ETKKN---ICQLNQSTFII 212

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
            + TSI + +E  N    +  + +T+ G V +  G++P  GE I +
Sbjct: 213 KSLTSIKEFNETFNTNFND-EEVDTIGGLVMKKIGHLPIRGEYINI 257

Plays a role in the transport of magnesium and cobalt ions.

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
255584625	676	Magnesium and cobalt efflux protein corC	0.972	0.362	0.877	1e-126
356553522	665	PREDICTED: DUF21 domain-containing prote	0.952	0.360	0.860	1e-120
356501616	666	PREDICTED: DUF21 domain-containing prote	0.948	0.358	0.847	1e-118
42562776	653	CBS and transporter associated domain-co	0.968	0.373	0.828	1e-115
29824374	653	unknown protein [Arabidopsis thaliana] g	0.968	0.373	0.828	1e-115
8778312	930	F14J16.20 [Arabidopsis thaliana]	0.968	0.262	0.828	1e-115
225460751	669	PREDICTED: DUF21 domain-containing prote	0.948	0.357	0.842	1e-114
297737546	537	unnamed protein product [Vitis vinifera]	0.948	0.445	0.842	1e-114
147863903	723	hypothetical protein VITISV_018001 [Viti	0.948	0.330	0.842	1e-114
343172968	545	CBS domain and transporter associated do	0.972	0.449	0.820	1e-113

>gi|255584625|ref|XP_002533036.1| Magnesium and cobalt efflux protein corC, putative [Ricinus communis] gi|223527174|gb|EEF29344.1| Magnesium and cobalt efflux protein corC, putative [Ricinus communis]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/245 (87%), Positives = 234/245 (95%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNI+GIAYAMDLLDY QKGELLEST V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 394 VPVFEQRVDNIMGIAYAMDLLDYAQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFR 453

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGY+VMRAEGIYDV
Sbjct: 454 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYVVMRAEGIYDV 513

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSEDLNIKMPEGHQYETVSGF+CEAFGYIPRTGE+IKV++EKENQEE+DE T
Sbjct: 514 DANTSIDQLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGETIKVILEKENQEEDDEQT 573

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E  SDRQD  +KHQIYKLEILAGNARKVSAVRFE+INN +  ++AKEVTR+VPKIMKR+W
Sbjct: 574 EGKSDRQDQNDKHQIYKLEILAGNARKVSAVRFEQINNGDEMMEAKEVTRLVPKIMKRRW 633

Query: 241 SSDDE 245
           SSD+E
Sbjct: 634 SSDEE 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553522|ref|XP_003545104.1| PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/244 (86%), Positives = 232/244 (95%), Gaps = 4/244 (1%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNI+GIAYAMDLLDYVQKGELLEST V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 391 VPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFR 450

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGTVG+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEG++DV
Sbjct: 451 IRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDV 510

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGE IKVV+E+E++++N+   
Sbjct: 511 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNN--- 567

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E+ +D+QD KEK+QI+KLEILAGNARKVSAVRFERINN++  L+ K VTRMVPKIMKRKW
Sbjct: 568 ESNADQQDQKEKNQIFKLEILAGNARKVSAVRFERINNNDEMLETK-VTRMVPKIMKRKW 626

Query: 241 SSDD 244
           SSD+
Sbjct: 627 SSDE 630

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501616|ref|XP_003519620.1| PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/243 (84%), Positives = 228/243 (93%), Gaps = 4/243 (1%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNI+GIAYAMDLLDYVQKGELLEST V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 392 VPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFR 451

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGTVG+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEG++DV
Sbjct: 452 IRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDV 511

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGE IKVV+E+E++++N+   
Sbjct: 512 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNN--- 568

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E+ +D+QD KEK+Q +KLEILAGNARKVSAVRFE INN++  L+ K VTRM+PKIMKRKW
Sbjct: 569 ESNADQQDQKEKNQSFKLEILAGNARKVSAVRFEHINNNDEMLETK-VTRMIPKIMKRKW 627

Query: 241 SSD 243
            SD
Sbjct: 628 RSD 630

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562776|ref|NP_175989.2| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gi|342179478|sp|Q84R21.2|Y1559_ARATH RecName: Full=DUF21 domain-containing protein At1g55930, chloroplastic; AltName: Full=CBS domain-containing protein CBSDUFCH2; Flags: Precursor gi|332195201|gb|AEE33322.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQRIDNIVGIAYAMDLLDYV KG+LLEST V DMAHKPA+FVPDSMSVWNLLREFR
Sbjct: 384 VPVFEQRIDNIVGIAYAMDLLDYVPKGKLLESTTVVDMAHKPAFFVPDSMSVWNLLREFR 443

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEGIYDV
Sbjct: 444 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIYDV 503

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSE+LNIKM EGHQYETVSGFVCEAFGYIP+TGES+ VV+EKEN EENDE  
Sbjct: 504 DANTSIDQLSEELNIKMAEGHQYETVSGFVCEAFGYIPKTGESVTVVLEKENWEENDEQD 563

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E   +RQD KEKHQIY+LEILAGNARKVSAVRFER+++ +   +A++V  MVPK + RKW
Sbjct: 564 EGKHERQDQKEKHQIYRLEILAGNARKVSAVRFERVSDMDQVSEARDVKNMVPKFV-RKW 622

Query: 241 SSDDE 245
           SS+++
Sbjct: 623 SSEED 627

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29824374|gb|AAP04147.1| unknown protein [Arabidopsis thaliana] gi|110739091|dbj|BAF01462.1| hypothetical protein [Arabidopsis thaliana]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQRIDNIVGIAYAMDLLDYV KG+LLEST V DMAHKPA+FVPDSMSVWNLLREFR
Sbjct: 384 VPVFEQRIDNIVGIAYAMDLLDYVPKGKLLESTTVVDMAHKPAFFVPDSMSVWNLLREFR 443

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEGIYDV
Sbjct: 444 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIYDV 503

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSE+LNIKM EGHQYETVSGFVCEAFGYIP+TGES+ VV+EKEN EENDE  
Sbjct: 504 DANTSIDQLSEELNIKMAEGHQYETVSGFVCEAFGYIPKTGESVTVVLEKENWEENDEQD 563

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E   +RQD KEKHQIY+LEILAGNARKVSAVRFER+++ +   +A++V  MVPK + RKW
Sbjct: 564 EGKHERQDQKEKHQIYRLEILAGNARKVSAVRFERVSDMDQVSEARDVKNMVPKFV-RKW 622

Query: 241 SSDDE 245
           SS+++
Sbjct: 623 SSEED 627

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778312|gb|AAF79321.1|AC002304_14 F14J16.20 [Arabidopsis thaliana]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQRIDNIVGIAYAMDLLDYV KG+LLEST V DMAHKPA+FVPDSMSVWNLLREFR
Sbjct: 661 VPVFEQRIDNIVGIAYAMDLLDYVPKGKLLESTTVVDMAHKPAFFVPDSMSVWNLLREFR 720

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEGIYDV
Sbjct: 721 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIYDV 780

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSE+LNIKM EGHQYETVSGFVCEAFGYIP+TGES+ VV+EKEN EENDE  
Sbjct: 781 DANTSIDQLSEELNIKMAEGHQYETVSGFVCEAFGYIPKTGESVTVVLEKENWEENDEQD 840

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E   +RQD KEKHQIY+LEILAGNARKVSAVRFER+++ +   +A++V  MVPK + RKW
Sbjct: 841 EGKHERQDQKEKHQIYRLEILAGNARKVSAVRFERVSDMDQVSEARDVKNMVPKFV-RKW 899

Query: 241 SSDDE 245
           SS+++
Sbjct: 900 SSEED 904

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460751|ref|XP_002273722.1| PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform 1 [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/241 (84%), Positives = 223/241 (92%), Gaps = 2/241 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNIVG+AYAMDLLDY+QKGE+LES+ V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 381 VPVFEQRVDNIVGVAYAMDLLDYLQKGEILESSIVGDMAHKPAYFVPDSMSVWNLLREFR 440

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGTVG+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGY+VM+ EGI+DV
Sbjct: 441 IRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYVVMKGEGIFDV 500

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSEDLNIKMPEGHQYETVSGF+CE FGYIPRTGESIKVV+E + + E   + 
Sbjct: 501 DANTSIDQLSEDLNIKMPEGHQYETVSGFICEVFGYIPRTGESIKVVLENQEENEEYTEQ 560

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E  SDRQ+ KEK  I+KLEILAGNARKVSAVRFERINND+A L+ KEVTR+VPKIMKRKW
Sbjct: 561 E--SDRQEQKEKQHIFKLEILAGNARKVSAVRFERINNDDAALETKEVTRLVPKIMKRKW 618

Query: 241 S 241
           S
Sbjct: 619 S 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737546|emb|CBI26747.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/241 (84%), Positives = 223/241 (92%), Gaps = 2/241 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNIVG+AYAMDLLDY+QKGE+LES+ V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 249 VPVFEQRVDNIVGVAYAMDLLDYLQKGEILESSIVGDMAHKPAYFVPDSMSVWNLLREFR 308

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGTVG+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGY+VM+ EGI+DV
Sbjct: 309 IRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYVVMKGEGIFDV 368

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSEDLNIKMPEGHQYETVSGF+CE FGYIPRTGESIKVV+E + + E   + 
Sbjct: 369 DANTSIDQLSEDLNIKMPEGHQYETVSGFICEVFGYIPRTGESIKVVLENQEENEEYTEQ 428

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E  SDRQ+ KEK  I+KLEILAGNARKVSAVRFERINND+A L+ KEVTR+VPKIMKRKW
Sbjct: 429 E--SDRQEQKEKQHIFKLEILAGNARKVSAVRFERINNDDAALETKEVTRLVPKIMKRKW 486

Query: 241 S 241
           S
Sbjct: 487 S 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863903|emb|CAN83218.1| hypothetical protein VITISV_018001 [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/241 (84%), Positives = 223/241 (92%), Gaps = 2/241 (0%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNIVG+AYAMDLLDY+QKGE+LES+ V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 435 VPVFEQRVDNIVGVAYAMDLLDYLQKGEILESSIVGDMAHKPAYFVPDSMSVWNLLREFR 494

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMAVVLNEYGGTVG+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGY+VM+ EGI+DV
Sbjct: 495 IRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYVVMKGEGIFDV 554

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSEDLNIKMPEGHQYETVSGF+CE FGYIPRTGESIKVV+E + + E   + 
Sbjct: 555 DANTSIDQLSEDLNIKMPEGHQYETVSGFICEVFGYIPRTGESIKVVLENQEENEEYTEQ 614

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E  SDRQ+ KEK  I+KLEILAGNARKVSAVRFERINND+A L+ KEVTR+VPKIMKRKW
Sbjct: 615 E--SDRQEQKEKQHIFKLEILAGNARKVSAVRFERINNDDAALETKEVTRLVPKIMKRKW 672

Query: 241 S 241
           S
Sbjct: 673 S 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172968|gb|AEL99187.1| CBS domain and transporter associated domain-containing protein, partial [Silene latifolia]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/245 (82%), Positives = 223/245 (91%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           VPVFEQR+DNIVGIAYAMD+LDYVQKGELLES+ V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct: 301 VPVFEQRVDNIVGIAYAMDMLDYVQKGELLESSSVGDMAHKPAYFVPDSMSVWNLLREFR 360

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
           IRKVHMA+VLNEYGGTVG+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMR EGIYDV
Sbjct: 361 IRKVHMAIVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRGEGIYDV 420

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           DANTSIDQLSE+LNIKMPE HQYETVSGF+CEAFGYIP+TGES+KVVVE++ QEE+DE T
Sbjct: 421 DANTSIDQLSEELNIKMPEDHQYETVSGFICEAFGYIPKTGESMKVVVERDTQEEDDEYT 480

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
           E  S+R++ KEK QI+KLEILAGNARKVSAVRFER+ +D+  L+ KEV    PKIMKR  
Sbjct: 481 EVESERREHKEKVQIFKLEILAGNARKVSAVRFERMEHDDKLLETKEVAPFFPKIMKRNR 540

Query: 241 SSDDE 245
             DD+
Sbjct: 541 PRDDD 545

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2012045	653	AT1G55930 "AT1G55930" [Arabido	0.968	0.373	0.779	2.8e-98
TAIR|locus:2090024	661	AT3G13070 "AT3G13070" [Arabido	0.968	0.369	0.771	5.2e-97
UNIPROTKB|Q74AS0	284	GSU2282 "CBS and CorC_HlyC dom	0.611	0.542	0.371	1.2e-24
TIGR_CMR|GSU_2282	284	GSU_2282 "CBS domain protein"	0.611	0.542	0.371	1.2e-24
UNIPROTKB|Q83DX7	283	corC "Magnesium and cobalt eff	0.615	0.547	0.374	4.2e-24
TIGR_CMR|CBU_0565	283	CBU_0565 "CBS domain protein"	0.615	0.547	0.374	4.2e-24
TIGR_CMR|SO_1178	291	SO_1178 "magnesium and cobalt	0.611	0.529	0.415	4.2e-24
UNIPROTKB|Q3Z6L6	424	DET1425 "Putative uncharacteri	0.611	0.363	0.341	8.2e-24
TIGR_CMR|DET_1425	424	DET_1425 "conserved hypothetic	0.611	0.363	0.341	8.2e-24
TIGR_CMR|CPS_3575	292	CPS_3575 "magnesium and cobalt	0.607	0.523	0.366	1.6e-22

TAIR|locus:2012045 AT1G55930 "AT1G55930" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 191/245 (77%), Positives = 212/245 (86%)

Query:     1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
             VPVFEQRIDNIVGIAYAMDLLDYV KG+LLEST V DMAHKPA+FVPDSMSVWNLLREFR
Sbjct:   384 VPVFEQRIDNIVGIAYAMDLLDYVPKGKLLESTTVVDMAHKPAFFVPDSMSVWNLLREFR 443

Query:    61 IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
             IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMRAEGIYDV
Sbjct:   444 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIYDV 503

Query:   121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIXXXXXXXXXXXXXXXX 180
             DANTSIDQLSE+LNIKM EGHQYETVSGFVCEAFGYIP+TGES+                
Sbjct:   504 DANTSIDQLSEELNIKMAEGHQYETVSGFVCEAFGYIPKTGESVTVVLEKENWEENDEQD 563

Query:   181 XXGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
                 +RQD KEKHQIY+LEILAGNARKVSAVRFER+++ +   +A++V  MVPK + RKW
Sbjct:   564 EGKHERQDQKEKHQIYRLEILAGNARKVSAVRFERVSDMDQVSEARDVKNMVPKFV-RKW 622

Query:   241 SSDDE 245
             SS+++
Sbjct:   623 SSEED 627

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2090024 AT3G13070 "AT3G13070" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 189/245 (77%), Positives = 211/245 (86%)

Query:     1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
             VPVFEQRIDNIVGIAYAMDLLDYVQKG+LLEST V DMAHKPAYFVPDSMSVWNLLREFR
Sbjct:   389 VPVFEQRIDNIVGIAYAMDLLDYVQKGDLLESTSVGDMAHKPAYFVPDSMSVWNLLREFR 448

Query:    61 IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
             IRKVHMAVVLNEYGGT+G+VTLEDVVEEIVGEIFDE+DSKEEIQKKTGYIVMR EGIYDV
Sbjct:   449 IRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRDEGIYDV 508

Query:   121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIXXXXXXXXXXXXXXXX 180
             DANTSIDQLSE+LN+KMPEG QYETVSGFVCEAFGYIP+TGES+                
Sbjct:   509 DANTSIDQLSEELNMKMPEGIQYETVSGFVCEAFGYIPKTGESVKVVLEKESWEEDGEEE 568

Query:   181 XXGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEAKLDAKEVTRMVPKIMKRKW 240
                 +RQ+ KEK+QIY++EILAGNARKVSAVRFER+N+ +   +A +V  MVPK + RKW
Sbjct:   569 EGKQERQEPKEKNQIYRVEILAGNARKVSAVRFERVNDMDQVSEASDVKSMVPKFV-RKW 627

Query:   241 SSDDE 245
             SS+++
Sbjct:   628 SSEED 632

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q74AS0 GSU2282 "CBS and CorC_HlyC domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 61/164 (37%), Positives = 102/164 (62%)

Query:     1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
             +PV++  +DNI+G+ YA DLL Y    E   +  +  +   P YF+P++ ++  LL+EF+
Sbjct:    97 IPVYDGTVDNIIGLIYAKDLLKYWGMSE--PAIDLKRIMRAP-YFIPETKNLEELLQEFK 153

Query:    61 IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
              ++VH+A+V++EYGGT G+VT+ED++E+IVG+I DE D +EE      ++    +G   V
Sbjct:   154 RKRVHIAIVIDEYGGTSGLVTIEDLLEQIVGDIQDEYDLEEE------WLEEEPDGSILV 207

Query:   121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
             DA   I+ L E   I++ E  +++TV+G +    G IP   E +
Sbjct:   208 DARLPIEDLEEYFGIEV-EREKFDTVAGLIFHLTGRIPMVREEV 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2282 GSU_2282 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 61/164 (37%), Positives = 102/164 (62%)

Query:     1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
             +PV++  +DNI+G+ YA DLL Y    E   +  +  +   P YF+P++ ++  LL+EF+
Sbjct:    97 IPVYDGTVDNIIGLIYAKDLLKYWGMSE--PAIDLKRIMRAP-YFIPETKNLEELLQEFK 153

Query:    61 IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
              ++VH+A+V++EYGGT G+VT+ED++E+IVG+I DE D +EE      ++    +G   V
Sbjct:   154 RKRVHIAIVIDEYGGTSGLVTIEDLLEQIVGDIQDEYDLEEE------WLEEEPDGSILV 207

Query:   121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
             DA   I+ L E   I++ E  +++TV+G +    G IP   E +
Sbjct:   208 DARLPIEDLEEYFGIEV-EREKFDTVAGLIFHLTGRIPMVREEV 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83DX7 corC "Magnesium and cobalt efflux protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 61/163 (37%), Positives = 96/163 (58%)

Query:     2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
             P+  +  D ++GI  A DLL Y   GE     ++ D+A +PA F+P+S  +  LL EFR+
Sbjct:   100 PIISESRDEVIGILLAKDLLQYTV-GEKQAKAQIKDLA-RPAIFIPESKRLDVLLNEFRL 157

Query:    62 RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
             ++ HMA+V++EYG   G++T+EDV+E+IVG I DE+D  EE       I       + V 
Sbjct:   158 KRYHMAIVVDEYGSVSGLITIEDVLEQIVGSIQDETDIVEEEP-----ITKLNPKEFTVK 212

Query:   122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
             A T ID  +     K+ +   ++T+ G+V +  G++P+ GESI
Sbjct:   213 ALTPIDVFNNYFGTKIND-EDFDTIGGYVMQQIGHLPKRGESI 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0565 CBU_0565 "CBS domain protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 61/163 (37%), Positives = 96/163 (58%)

Query:     2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
             P+  +  D ++GI  A DLL Y   GE     ++ D+A +PA F+P+S  +  LL EFR+
Sbjct:   100 PIISESRDEVIGILLAKDLLQYTV-GEKQAKAQIKDLA-RPAIFIPESKRLDVLLNEFRL 157

Query:    62 RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
             ++ HMA+V++EYG   G++T+EDV+E+IVG I DE+D  EE       I       + V 
Sbjct:   158 KRYHMAIVVDEYGSVSGLITIEDVLEQIVGSIQDETDIVEEEP-----ITKLNPKEFTVK 212

Query:   122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
             A T ID  +     K+ +   ++T+ G+V +  G++P+ GESI
Sbjct:   213 ALTPIDVFNNYFGTKIND-EDFDTIGGYVMQQIGHLPKRGESI 254

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_1178 SO_1178 "magnesium and cobalt efflux protein CorC" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 69/166 (41%), Positives = 96/166 (57%)

Query:     2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
             PV  +  D+I GI  A DL+ Y       E     D   +PA  VP+S  V  LL+EFR 
Sbjct:   101 PVVNEDKDHIEGILLAKDLIPYGFSNS--EEPFSLDRVIRPAVVVPESKRVDVLLKEFRS 158

Query:    62 RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE--SDSKEEIQ-KKTGYIVMRAEGIY 118
             ++ HMA+V++EYGG  G+VT+ED++EEIVGEI DE   DS E+ + +K G  V      Y
Sbjct:   159 QRYHMAIVVDEYGGVSGLVTIEDILEEIVGEIEDEFDHDSPEDTEIRKVGNTV------Y 212

Query:   119 DVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
              V A T I+  +E+ N    +  +++TV G V  AFG++P   ESI
Sbjct:   213 MVKALTPIEDFNEEFNTHFSD-EEFDTVGGLVSHAFGHLPERNESI 257

GO:0006824 "cobalt ion transport" evidence=ISS

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=ISS

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

UNIPROTKB|Q3Z6L6 DET1425 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 275 (101.9 bits), Expect = 8.2e-24, P = 8.2e-24
 Identities = 56/164 (34%), Positives = 98/164 (59%)

Query:     2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
             PV+E  +DN++GI    D+L  + KG   +   V D+  +PAYF P++  +  L  E R 
Sbjct:   238 PVYEDNMDNVLGILSIKDVLMALAKGTHNQQDLVDDLM-RPAYFAPETKPIGKLFNEMRE 296

Query:    62 RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE-SDSKEEIQKKTGYIVMRAEGIYDV 120
             +   M VV++EYGGT G+V+L  ++EEIVG + DE ++++++ +    Y        + V
Sbjct:   297 KNFRMCVVVDEYGGTAGIVSLSRLMEEIVGPVGDELAEAEKDYESINEYT-------FQV 349

Query:   121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
             D +  I++ + ++ + +PEG  YET++G + +  GYIP+ G+ I
Sbjct:   350 DGSMRIEEANAEMELDLPEG-DYETIAGLILDRLGYIPKQGQQI 392

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1425 DET_1425 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 275 (101.9 bits), Expect = 8.2e-24, P = 8.2e-24
 Identities = 56/164 (34%), Positives = 98/164 (59%)

Query:     2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
             PV+E  +DN++GI    D+L  + KG   +   V D+  +PAYF P++  +  L  E R 
Sbjct:   238 PVYEDNMDNVLGILSIKDVLMALAKGTHNQQDLVDDLM-RPAYFAPETKPIGKLFNEMRE 296

Query:    62 RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE-SDSKEEIQKKTGYIVMRAEGIYDV 120
             +   M VV++EYGGT G+V+L  ++EEIVG + DE ++++++ +    Y        + V
Sbjct:   297 KNFRMCVVVDEYGGTAGIVSLSRLMEEIVGPVGDELAEAEKDYESINEYT-------FQV 349

Query:   121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
             D +  I++ + ++ + +PEG  YET++G + +  GYIP+ G+ I
Sbjct:   350 DGSMRIEEANAEMELDLPEG-DYETIAGLILDRLGYIPKQGQQI 392

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3575 CPS_3575 "magnesium and cobalt efflux protein CorC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 59/161 (36%), Positives = 99/161 (61%)

Query:     2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
             PV  + ID++ GI  A DLL +    +  ++  ++D+  +PA  VP+S  V  LL+EFR 
Sbjct:   102 PVVNEDIDHVDGILLAKDLLAFGFNSQS-DNFSLSDVI-RPAIIVPESKKVEPLLKEFRS 159

Query:    62 RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
              + HMA+V++EYGG  GV+T+ED++E+IVGEI DE+D  +EI+++  ++   A  +Y V 
Sbjct:   160 NRYHMAIVVDEYGGVSGVITIEDILEQIVGEIEDETD--DEIEEEIKHL---AGNVYLVK 214

Query:   122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGE 162
             A T +   ++  N    + +  +T+ G V   F ++P+ GE
Sbjct:   215 ALTELGDFNDYFNCNFNDTNA-DTIGGIVLRQFNHMPQKGE 254

GO:0006824 "cobalt ion transport" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=ISS

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84R21	Y1559_ARATH	No assigned EC number	0.8285	0.9682	0.3736	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G55930	CBS domain-containing protein / transporter associated domain-containing protein; CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF21 (InterPro-IPR002550), Transporter-associated region (InterPro-IPR005170), Cystathionine beta-synthase, core (InterPro-IPR000644); BEST Arabidopsis thaliana protein match is- CBS domain-co [...] (653 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G66470	GTP binding / RNA binding; GTP binding / RNA binding; FUNCTIONS IN- RNA binding, GTP binding; L [...] (427 aa)	•			•					0.647
	AT4G19610	RNA binding / nucleic acid binding / nucleotide binding; RNA binding / nucleic acid binding / n [...] (816 aa)				•					0.526
	AT1G26660	c-myc binding protein, putative / prefoldin, putative; c-myc binding protein, putative / prefol [...] (152 aa)				•					0.502
	AT1G44910	protein binding; protein binding; FUNCTIONS IN- protein binding; INVOLVED IN- biological_proces [...] (958 aa)				•					0.484
	AT3G52140	tetratricopeptide repeat (TPR)-containing protein; tetratricopeptide repeat (TPR)-containing pr [...] (1403 aa)				•					0.469
	OXA1	OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter; essential factor for protei [...] (429 aa)				•					0.458
	AT1G76120	tRNA pseudouridine synthase family protein; tRNA pseudouridine synthase family protein; FUNCTIO [...] (463 aa)				•					0.458
	DCL4	DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III; Encodes an RNase III-lik [...] (1702 aa)				•					0.457
	AT1G53350	ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- defense response, apoptosis; [...] (927 aa)				•					0.436
	PRMT4A	PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic protein]-arginine N-methyltransfe [...] (528 aa)				•					0.432

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	9e-49
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	1e-33
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	1e-31
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	8e-31
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	3e-30
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	3e-24
pfam03471	80	pfam03471, CorC_HlyC, Transporter associated domai	6e-11
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	1e-09
smart01091	78	smart01091, CorC_HlyC, Transporter associated doma	1e-09
pfam00571	57	pfam00571, CBS, CBS domain	4e-08
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-07
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	4e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	6e-04
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	0.004

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  165 bits (421), Expect = 9e-49
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 35/221 (15%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +PV++  +DNI+GI +  DLL  +  G+   S     +  +P  FVP+++S+ +LL EFR
Sbjct: 242 IPVYDGDLDNIIGIVHVKDLLRALLDGQ---SDLDLRVLVRPPLFVPETLSLSDLLEEFR 298

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
             + HMA+V++EYGG  G+VTLED++EEIVGEI DE D  EE       I+ R +  + V
Sbjct: 299 EERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEED-----IIQRDDDGWLV 353

Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDT 180
           D    +++L E L I + E   Y+T++G V    G IP+ GES+ +              
Sbjct: 354 DGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVI-------------- 399

Query: 181 ENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDEA 221
                           + E+L  + R++  V   R+ +  +
Sbjct: 400 -------------GGLRFEVLDMDGRRIDKVLIVRLKDKPS 427

Length = 429

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score =  122 bits (309), Expect = 1e-33
 Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 9/163 (5%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  D++ GI  A DLL +++     E   + ++  +PA  VP+S  V  LL+EFR 
Sbjct: 104 PVISEDKDHVEGILLAKDLLPFMRSDA--EPFDIKELL-RPAVVVPESKRVDRLLKEFRS 160

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
           ++ HMA+V++E+GG  G+VT+ED++E+IVG+I DE D +E+       I   +   + V 
Sbjct: 161 QRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDAD-----IRQLSRHTWRVR 215

Query: 122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
           A T I+  +E       +  + +T+ G V +AFG++P  GE I
Sbjct: 216 ALTEIEDFNEAFGTHFSD-EEVDTIGGLVMQAFGHLPARGEKI 257

Length = 293

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score =  120 bits (302), Expect = 1e-31
 Identities = 50/167 (29%), Positives = 95/167 (56%), Gaps = 10/167 (5%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +P++   +DNI+G+ +  DLL  + +        +   A +P YFVP+   + + L  F+
Sbjct: 236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEP-YFVPEGTPLSDQLVAFQ 294

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSK-EEIQKKTGYIVMRAEGIYD 119
             K H+A+V++EYG   G+VTLED++EEIVG+  DE D+  +E+  +       ++G + 
Sbjct: 295 RNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQ-------SDGSFI 347

Query: 120 VDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
           +D + ++  L+  L+  +P+     T++G V E    IP  G+++++
Sbjct: 348 IDGSANVRDLNRALDWNLPDE-DARTINGLVLEELEEIPEEGQAVRI 393

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  117 bits (295), Expect = 8e-31
 Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 25/174 (14%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +PV+++ IDNI G+ Y  DLL ++ K    ++     +  +P YFVP++  + +LLR+F+
Sbjct: 227 IPVYKETIDNITGVLYIKDLLPHLNK----KNFDWQSLLREP-YFVPENKKLDDLLRDFQ 281

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEG---- 116
            +K H+A+V++EYGGT G+VTLED++EEIVG+I DE D ++ I  K        EG    
Sbjct: 282 EKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSL 341

Query: 117 -----IYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIK 165
                I  ++ +   +   E            ET++GF+ E  G  P+ GE I 
Sbjct: 342 KDFYKILKLEEDMFDEVKGEA-----------ETLAGFLLEISGGFPKKGEKIT 384

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score =  108 bits (272), Expect = 3e-30
 Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 3/88 (3%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV++  +DNI+G+ +  DLL  + +GE  E   + D+   P  FVP+S  + +LL E R
Sbjct: 27  FPVYDGDLDNIIGVVHVKDLLRALAEGE--EDLDLRDLLR-PPLFVPESTPLDDLLEEMR 83

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEE 88
             + HMA+V++EYGGT G+VTLED++EE
Sbjct: 84  KERSHMAIVVDEYGGTAGLVTLEDILEE 111

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 98.0 bits (244), Expect = 3e-24
 Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 9/165 (5%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  D+I GI  A DLL +++      S    D   + A  VP+S  V  +L+EFR 
Sbjct: 104 PVISEDKDHIEGILMAKDLLPFMRSDAEAFSM---DKVLRQAVVVPESKRVDRMLKEFRS 160

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVD 121
           ++ HMA+V++E+GG  G+VT+ED++E IVGEI DE D +++I          +   + V 
Sbjct: 161 QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDID-----FRQLSRHTWTVR 215

Query: 122 ANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
           A  SI+  +E       +  + +T+ G V +AFG++P  GE+I +
Sbjct: 216 ALASIEDFNEAFGTHFSD-EEVDTIGGLVMQAFGHLPARGETIDI 259

Length = 292

>gnl|CDD|217581 pfam03471, CorC_HlyC, Transporter associated domain

 Score = 56.8 bits (138), Expect = 6e-11
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 26/106 (24%)

Query: 111 VMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEK 170
           V   +G Y VD    +D L+E L + +PE   Y+T++G V E  G IP  G+ + V +  
Sbjct: 1   VKLDDGSYLVDGRAPLDDLNELLGLDLPEE-DYDTLAGLVLELLGRIPEVGDKVTVELGG 59

Query: 171 ENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216
                                     +  +L  + R++  VR  ++
Sbjct: 60  -------------------------LRFTVLEVDGRRIKKVRVTKL 80

This small domain is found in a family of proteins with the pfam01595 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates. Length = 80

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 12/126 (9%)

Query: 44  YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDS---K 100
           YFVP+   +   L +F+  K  + +V++EYG   G+VT+ED++EEIVG+ F  S S    
Sbjct: 265 YFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD-FTTSMSPTLA 323

Query: 101 EEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT 160
           EE       +  + +G   +D   ++ ++++  N  +PE     TV+G + EA   IP  
Sbjct: 324 EE-------VTPQNDGSVIIDGTANVREINKAFNWHLPE-DDARTVNGVILEALEEIPVA 375

Query: 161 GESIKV 166
           G  +++
Sbjct: 376 GTRVRI 381

Length = 413

>gnl|CDD|215020 smart01091, CorC_HlyC, Transporter associated domain

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 111 VMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
           V   +G Y VD  T ID L+E L + +PE   Y+T+ G V E  G IP  G+S+++
Sbjct: 1   VKLDDGSYLVDGRTPIDDLNELLGLDLPEEE-YDTLGGLVLEELGRIPEVGDSVEI 55

This small domain is found in a family of proteins with the DUF21 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates. Length = 78

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91
          V D+       VP   S+   L   R   +    V++E G  VG+VTL D++  ++ 
Sbjct: 1  VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +PV +     +VGI    DLL  + +G L     V D+  +    V    S+        
Sbjct: 27  LPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELML 85

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVE 87
              +    V+++ G  VG+VT  D++ 
Sbjct: 86  EHGIRRLPVVDDEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 3   VFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIR 62
           V +      +GI    D+L  +  G  L++  V ++   P   VP   S+++  +  R  
Sbjct: 29  VVDD--GRPLGIVTERDILRLLASGPDLQTP-VGEVMSSPLLTVPADTSLYDARQLMREH 85

Query: 63  KVHMAVVLNEYGGTVGVVTLEDVV 86
            +   VV+++ G  +G+++  D++
Sbjct: 86  GIRHLVVVDDDGELLGLLSQTDLL 109

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 13/80 (16%), Positives = 29/80 (36%)

Query: 41  KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSK 100
           +    V    +V   LR      +    V+++ G  VG+VT  D++  +     D   + 
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 101 EEIQKKTGYIVMRAEGIYDV 120
            ++  +    V     + + 
Sbjct: 61  GDVMTRDVVTVSPDTSLEEA 80

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV +     +VGI    D+   + +G  LE  KV D+  K    + +   +++ +R    
Sbjct: 28  PVVDD--GKLVGIVTLSDIAHAIARG--LELAKVKDVMTKDVITIDEDEQLYDAIRLMNK 83

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEE 88
             V   +V ++ G  VG++T  D++  
Sbjct: 84  HNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 3   VFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWN---LLREF 59
           +  +  D  +GI    DLLD V    L  ST V ++A  P   V     ++N   L+   
Sbjct: 27  LLVRDGDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNALLLMTRH 86

Query: 60  RIRKVHMAVVLNEYGGTVGVVTLEDV 85
           RI +    VV+ E G  VGV+   D+
Sbjct: 87  RIHR----VVVREGGEVVGVLEQTDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PRK11573	413	hypothetical protein; Provisional	100.0
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	99.78
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.25
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.19
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.14
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.14
COG2524	294	Predicted transcriptional regulator, contains C-te	99.14
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.13
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.13
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.11
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.1
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.09
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.08
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.08
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.07
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.07
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.06
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.05
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.04
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.03
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.03
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.02
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.02
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.02
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.02
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.02
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.01
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.01
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.01
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.0
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.0
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.99
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.99
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.98
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.98
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.98
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.98
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.97
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.97
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.96
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.96
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.96
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.95
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.94
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.94
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.94
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.93
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.93
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.93
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.91
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.9
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.9
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.89
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.89
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.88
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.87
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.86
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.85
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.84
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.84
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.83
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.82
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.81
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.81
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.78
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.78
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.75
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.73
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.71
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.7
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.64
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.63
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.62
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.57
COG4109	432	Predicted transcriptional regulator containing CBS	98.54
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.54
COG0517	117	FOG: CBS domain [General function prediction only]	98.46
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.45
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.45
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.43
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.4
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.35
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.31
COG3620	187	Predicted transcriptional regulator with C-termina	98.28
COG2905	610	Predicted signal-transduction protein containing c	98.16
KOG2118	498	consensus Predicted membrane protein, contains two	98.13
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	98.1
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.9
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.88
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.85
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.83
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.78
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.74
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.71
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.71
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.69
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.66
COG2524	294	Predicted transcriptional regulator, contains C-te	97.65
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.57
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.54
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.53
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.51
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.5
PRK05326	562	potassium/proton antiporter; Reviewed	97.49
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.48
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.46
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.45
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.45
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.43
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.42
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.4
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.4
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.38
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.37
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.36
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.35
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.33
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.33
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.3
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.3
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.29
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.27
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.26
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.26
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.25
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.24
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.24
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.19
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.17
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.17
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.13
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.1
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.1
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.1
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.09
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.09
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.09
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.09
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.04
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.03
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.02
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.01
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.01
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.99
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	96.97
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	96.96
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	96.93
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.93
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.92
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	96.91
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	96.9
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	96.89
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.85
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	96.85
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.83
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.82
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.81
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.8
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.79
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.77
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.75
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.75
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.68
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.66
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.65
COG4109	432	Predicted transcriptional regulator containing CBS	96.63
COG3620	187	Predicted transcriptional regulator with C-termina	96.55
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	96.43
COG2905	610	Predicted signal-transduction protein containing c	96.41
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	96.39
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.29
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.26
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.17
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.13
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.96
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	95.93
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.87
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	95.86
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	95.81
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	95.66
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	95.6
COG0517	117	FOG: CBS domain [General function prediction only]	95.37
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	95.31
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.24
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	94.55
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.5
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	93.83
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	93.78
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	91.85
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	91.79
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	84.94
PRK11573	413	hypothetical protein; Provisional	80.95

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-43  Score=335.22  Aligned_cols=183  Identities=22%  Similarity=0.452  Sum_probs=162.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      ||||+++.|+|+|+||.||++..+..+......++.+++ ||++|||+++++.++|++||+++.|||+|+||||+++|||
T Consensus       223 ~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV  301 (413)
T PRK11573        223 IVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV  301 (413)
T ss_pred             EEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe
Confidence            699999999999999999999765433211123455666 8999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~  160 (252)
                      |++||+|+|+|+|.||+|..+.     ..+.+.++|+|+++|.++++|+++.||++||++ +|+|+|||++++||++|++
T Consensus       302 TleDilEeivGei~de~d~~~~-----~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~-~~~Tl~G~i~~~lg~iP~~  375 (413)
T PRK11573        302 TVEDILEEIVGDFTTSMSPTLA-----EEVTPQNDGSVIIDGTANVREINKAFNWHLPED-DARTVNGVILEALEEIPVA  375 (413)
T ss_pred             eHHHHHHHHhCCCCcccCcccc-----cceEEecCCEEEEEeeeEHHHHHHHhCCCCCCC-CCeeHHHHHHHHhCcCCCC
Confidence            9999999999999999874221     236778899999999999999999999999875 7999999999999999999


Q ss_pred             CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                      ||++.+                           ++|+|+|++|+++||.+|++++..
T Consensus       376 Ge~~~~---------------------------~~~~f~V~~~~~~rI~~v~v~~~~  405 (413)
T PRK11573        376 GTRVRI---------------------------GEYDIDILDVQDNMIKQVKVTPVK  405 (413)
T ss_pred             CCEEEE---------------------------CCEEEEEEEecCCeEEEEEEEECC
Confidence            999999                           599999999999999999998654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.1e-42  Score=298.17  Aligned_cols=183  Identities=33%  Similarity=0.616  Sum_probs=168.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      |||+.++.|+|.||+++||||..+....  ..+.+.+++ ||+.+|||+.++..+|+.||.++.|||+|+||||++.|+|
T Consensus       103 fPVi~edkD~v~GIL~AKDLL~~~~~~~--~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLV  179 (293)
T COG4535         103 FPVISEDKDHVEGILLAKDLLPFMRSDA--EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLV  179 (293)
T ss_pred             CCcccCCchhhhhhhhHHHHHHHhcCCc--ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeE
Confidence            7999999999999999999999876543  246788988 9999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~  160 (252)
                      |.|||||.|||+|.||||.++.     ..|.+.+.+.|.|.|.|+++++|+.||..++++ +++|+||++++.||++|+.
T Consensus       180 TIEDiLEqIVGdIEDE~Deee~-----~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDe-evDTIGGLVm~afGhLP~R  253 (293)
T COG4535         180 TIEDILEQIVGDIEDEYDEEED-----ADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDE-EVDTIGGLVMQAFGHLPAR  253 (293)
T ss_pred             EHHHHHHHHhcccccccchhhh-----hhhHhhcCCceEEEecccHHHHHHHhcCCCChh-hhhhhhHHHHHHhccCCCC
Confidence            9999999999999999986643     237788999999999999999999999999874 7999999999999999999


Q ss_pred             CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcCCc
Q 041526          161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINND  219 (252)
Q Consensus       161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~~~  219 (252)
                      |+.|.+                           ++|.|+|...|.||+..++++.+...
T Consensus       254 GE~i~i---------------------------~~~~FkV~~ADsRrv~~l~vt~~~~~  285 (293)
T COG4535         254 GEKIDI---------------------------GGYQFKVARADSRRVIQLHVTVPDDS  285 (293)
T ss_pred             CCEEEE---------------------------cceEEEEeecccceEEEEEEecCCCc
Confidence            999999                           69999999999999999999976543

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=100.00  E-value=2.1e-40  Score=302.29  Aligned_cols=180  Identities=33%  Similarity=0.583  Sum_probs=161.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      ||||+++.|+++|+||.|||+..+..+.  ...++.++| +++++||+++++.++|+.|++++.|+|+|+||||+++|+|
T Consensus       103 ~PV~~~~~d~iiGiv~~kDll~~~~~~~--~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiV  179 (292)
T PRK15094        103 FPVISEDKDHIEGILMAKDLLPFMRSDA--EAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLV  179 (292)
T ss_pred             EEEecCCCCcEEEEEEHHHHHhHhhccC--CcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEe
Confidence            6999887789999999999986554322  123578888 7788999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~  160 (252)
                      |++||+++|+|+|.||+|....     ..+.+.++|+|+++|.++|++|++.||++||++ +|+|||||++++||++|++
T Consensus       180 TleDIle~ivGei~de~d~~~~-----~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~-~~~Tl~G~i~~~l~~iP~~  253 (292)
T PRK15094        180 TIEDILELIVGEIEDEYDEEDD-----IDFRQLSRHTWTVRALASIEDFNEAFGTHFSDE-EVDTIGGLVMQAFGHLPAR  253 (292)
T ss_pred             EHHHHHHHHhCCCccccccccc-----cccEEeCCCeEEEEeccCHHHHHHHhCCCCCCC-CCccHHHHHHHHhCcCCCC
Confidence            9999999999999999974321     247788999999999999999999999999875 7999999999999999999


Q ss_pred             CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                      |++|.+                           ++|+|+|++|+++||.+|+|++.
T Consensus       254 Gd~i~~---------------------------~~~~f~V~~~~~~rI~~v~v~~~  282 (292)
T PRK15094        254 GETIDI---------------------------DGYQFKVAMADSRRIIQVHVKIP  282 (292)
T ss_pred             CCEEEE---------------------------CCEEEEEEEccCCeEEEEEEEEC
Confidence            999999                           59999999999999999999864

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=1.8e-40  Score=316.80  Aligned_cols=184  Identities=39%  Similarity=0.702  Sum_probs=160.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +|||+++.|+++|++|+|||+.+...++.  .......+ +|+++||+++++.++|++||+++.|||+|+||||++.|+|
T Consensus       242 ~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlV  318 (429)
T COG1253         242 IPVYDGDLDNIIGIVHVKDLLRALLDGQS--DLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLV  318 (429)
T ss_pred             eeEEcCCCCcEEEEEEHHHHHHHHhcCcc--ccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEe
Confidence            69999889999999999999988766531  12222334 5999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~  160 (252)
                      |++||+|+|+|+|.||+|..++     +.+.++.+++|+++|.++++|+++.+|++++++.+|+|+|||+++++|++|++
T Consensus       319 TleDIiEeIvGei~de~d~~~~-----~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~  393 (429)
T COG1253         319 TLEDIIEEIVGEIPDEHDEDEE-----EDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKV  393 (429)
T ss_pred             EHHHHHHHHhCCCcCccccccc-----ccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCC
Confidence            9999999999999999985322     23556655559999999999999999999866557999999999999999999


Q ss_pred             CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcCCc
Q 041526          161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINND  219 (252)
Q Consensus       161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~~~  219 (252)
                      |+.+.+                           ++|+|+|++|+++||.+|+|++....
T Consensus       394 g~~~~~---------------------------~~~~~~V~~~~~~rI~~v~i~~~~~~  425 (429)
T COG1253         394 GESVVI---------------------------GGLRFEVLDMDGRRIDKVLIVRLKDK  425 (429)
T ss_pred             CCEEEE---------------------------cCCeEEEEEccCCcEEEEEEEEcCCC
Confidence            999999                           58999999999999999999976543

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=4.3e-40  Score=312.52  Aligned_cols=177  Identities=35%  Similarity=0.611  Sum_probs=159.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +|||+++.|+|+||||.||++..+..+    ..++.+++ +++++||+++++.++|++|++++.|+|+|+||||+++|||
T Consensus       227 ~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV  301 (408)
T TIGR03520       227 IPVYKETIDNITGVLYIKDLLPHLNKK----NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV  301 (408)
T ss_pred             EEEEcCCCCceEEEEEHHHHHhHhccC----CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE
Confidence            699999889999999999998755321    24578888 7899999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCC---C-CCccCCHHHHHHHHhCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMP---E-GHQYETVSGFVCEAFGY  156 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~---~-~~~~~TLaGlil~~lg~  156 (252)
                      |++||+|+|+|+|.||+|.+.      ..+.+.++|+|+++|.++|+|+++.+|++++   . .++|+|+|||+++++|+
T Consensus       302 T~eDileeivgei~de~d~~~------~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~  375 (408)
T TIGR03520       302 TLEDIIEEIVGDISDEFDDED------LIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGG  375 (408)
T ss_pred             EHHHHHHHHhCCCCCcCCcCc------cceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCc
Confidence            999999999999999987432      3467789999999999999999999999853   2 24699999999999999


Q ss_pred             CCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEE
Q 041526          157 IPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFER  215 (252)
Q Consensus       157 iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~  215 (252)
                      +|++||++.+                           ++|+|+|++|+++||.+|++++
T Consensus       376 iP~~G~~~~~---------------------------~~~~f~V~~~~~~rI~~v~v~~  407 (408)
T TIGR03520       376 FPKKGEKITF---------------------------ENFEFTIEAMDKKRIKQVKVTI  407 (408)
T ss_pred             CCCCCCEEEE---------------------------CCEEEEEEEccCCeEEEEEEEE
Confidence            9999999999                           5999999999999999999975

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-40  Score=303.99  Aligned_cols=185  Identities=29%  Similarity=0.592  Sum_probs=168.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +|||+++.|||+||+|+||+++++.+.+.+...++..++ .+|+|||+++++.+.|..|++++.|+|+||||||++.|+|
T Consensus       236 iplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLV  314 (423)
T COG4536         236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLV  314 (423)
T ss_pred             eeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeee
Confidence            699999999999999999999998766534455676666 7889999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~  160 (252)
                      |+|||+|||+|++.|++|...      +.+.+.++|+|.++|+++++|+|+.|++.||++ +..|++|++++++..||..
T Consensus       315 TLEDIlEEIVGdftde~d~~~------~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e-~a~TinGLvle~le~IP~~  387 (423)
T COG4536         315 TLEDILEEIVGDFTDEHDTLA------KEVIPQSDGSFIIDGSANVRDLNRALDWNLPDE-DARTINGLVLEELEEIPEE  387 (423)
T ss_pred             eHHHHHHHHhccccccCcccc------hhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCC-cchhHHHHHHHHHHhCCCC
Confidence            999999999999999987543      246678999999999999999999999999975 6999999999999999999


Q ss_pred             CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcCCch
Q 041526          161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDE  220 (252)
Q Consensus       161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~~~~  220 (252)
                      |..+++                           .+++|+|++++.+||++|++.+....+
T Consensus       388 ~~~~~i---------------------------~~~~~~Il~~~~N~I~~vri~~~~~~~  420 (423)
T COG4536         388 GQAVRI---------------------------GGYRIDILKVQENRIKQVKITPLKALE  420 (423)
T ss_pred             CeEEEE---------------------------cCEEEEEEehhhcceeeEEEEecCccC
Confidence            999999                           699999999999999999999776543

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=99.78  E-value=1.2e-18  Score=130.38  Aligned_cols=79  Identities=33%  Similarity=0.687  Sum_probs=68.9

Q ss_pred             EecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcccccc
Q 041526          112 MRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKE  191 (252)
Q Consensus       112 ~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (252)
                      ++++|+|.++|+++|.+|++.||++||++ +++|||||++++||++|+.|+++.+..                       
T Consensus         2 ~~~~~~~~v~G~~~l~~l~~~~~~~l~~~-~~~Tl~G~i~~~l~~iP~~Ge~~~i~~-----------------------   57 (81)
T PF03471_consen    2 KLDDGTYIVSGSTPLDDLNELLGLDLPEE-DYDTLGGLILEQLGRIPEVGERVEIEL-----------------------   57 (81)
T ss_dssp             EETTSEEEEETTSBHHHHHHHHTS-TTTT-TTSBHHHHHHHHHTSS--TTSEEEEEE-----------------------
T ss_pred             eEcCCEEEEEecCCHHHHHHHHCcCCCcc-chhhHHHHHHHHcCCCCCCCeEEEEEc-----------------------
Confidence            56899999999999999999999999984 799999999999999999999777732                       


Q ss_pred             ccceEEEEEEEecCCeeeEEEEEEc
Q 041526          192 KHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       192 ~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                        ++|.|+|.+|+++||.+|+|++.
T Consensus        58 --~~~~~~V~~~~~~rI~~V~i~~~   80 (81)
T PF03471_consen   58 --ENYEFEVLEMDGRRIRKVRITRL   80 (81)
T ss_dssp             --TTEEEEEEEEETTEEEEEEEEE-
T ss_pred             --CCEEEEEEEeeCCEEEEEEEEEC
Confidence              48999999999999999999875

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.25  E-value=3.7e-11  Score=115.97  Aligned_cols=106  Identities=20%  Similarity=0.302  Sum_probs=88.6

Q ss_pred             CeEEecCC--CCEEEEEEHHHHhHHHHcCCcccccchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEE
Q 041526            1 VPVFEQRI--DNIVGIAYAMDLLDYVQKGELLESTKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTV   77 (252)
Q Consensus         1 lPV~~~~~--d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~v   77 (252)
                      +||++++.  ++++|+|+.+||+... .    ...++.++|. .++.++++++++.++++.|++++.++++|+|++|.++
T Consensus       114 lpVvd~~~~~~~lvGIVt~rDL~~~~-~----~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lv  188 (450)
T TIGR01302       114 IPVVEDGDMTGKLVGIITKRDIRFVK-D----KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELV  188 (450)
T ss_pred             EEEEeCCCCCCeEEEEEEHHHHhhhh-c----CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence            59998754  6999999999997532 1    1346889996 3899999999999999999999999999999999999


Q ss_pred             EEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChH
Q 041526           78 GVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSID  127 (252)
Q Consensus        78 GIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~  127 (252)
                      |+||.+||++++      ++.          .+.+..+|+|+|.|.+++.
T Consensus       189 GiVT~~DIl~~~------~~~----------~~~~d~~g~l~V~aav~~~  222 (450)
T TIGR01302       189 GLITMKDIVKRR------KFP----------HASKDENGRLIVGAAVGTR  222 (450)
T ss_pred             EEEEhHHhhhcc------cCC----------cceEeCCCCEEEEEEecCc
Confidence            999999999985      221          1344678999999999873

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.19  E-value=1.2e-10  Score=89.59  Aligned_cols=87  Identities=24%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC--CCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY--GGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~--G~~vG   78 (252)
                      +||+++ .++++|+++.+||+..+..+.......+.++|.+++.++++++++.++++.|.+++.+.++|+|++  |.++|
T Consensus        27 ~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~G  105 (115)
T cd04593          27 ALVVDR-DGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLG  105 (115)
T ss_pred             EEEEcC-CCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEE
Confidence            477765 378999999999987665432212234778888889999999999999999999999999999988  89999


Q ss_pred             EEcchhHHHH
Q 041526           79 VVTLEDVVEE   88 (252)
Q Consensus        79 IVTleDIlee   88 (252)
                      +||..|++++
T Consensus       106 vit~~di~~~  115 (115)
T cd04593         106 LLTRENVLLA  115 (115)
T ss_pred             EEEhHHhhcC
Confidence            9999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=3.4e-10  Score=87.96  Aligned_cols=87  Identities=24%  Similarity=0.376  Sum_probs=72.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-----------cccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-----------ESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVV   69 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-----------~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiV   69 (252)
                      +||++++.++++|+|+.+||+..+.++...           ...++.+++.+++.++++++++.++++.|++.+.+.++|
T Consensus        27 i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V  106 (125)
T cd04631          27 LPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPV  106 (125)
T ss_pred             ceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEE
Confidence            588876447899999999998766433210           123578888788999999999999999999999999999


Q ss_pred             ecCCCCEEEEEcchhHHH
Q 041526           70 LNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        70 VDE~G~~vGIVTleDIle   87 (252)
                      +|++|.++|+||..||+.
T Consensus       107 ~~~~~~~~Gvit~~di~~  124 (125)
T cd04631         107 VDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             EcCCCcEEEEEEHHHhhc
Confidence            998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=3.7e-10  Score=85.74  Aligned_cols=85  Identities=24%  Similarity=0.296  Sum_probs=71.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+++.+|++..+..... ....++.++|.+++.+++++.++.++++.|.+.+.+.++|+|+ |.++|+
T Consensus        27 ~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gv  104 (113)
T cd04623          27 VVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGI  104 (113)
T ss_pred             EEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEE
Confidence            5888764 789999999999976654321 1124688888888899999999999999999999988899987 999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|+++
T Consensus       105 it~~di~~  112 (113)
T cd04623         105 VSIGDVVK  112 (113)
T ss_pred             EEHHHhhc
Confidence            99999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.14  E-value=2.5e-10  Score=101.95  Aligned_cols=88  Identities=26%  Similarity=0.456  Sum_probs=81.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      .||.++  |+++|+++..|+..++++++  ....++++|++.++++.+++.+.++++.|..++....+|+|..|..+|+|
T Consensus       206 aPVvd~--dk~vGiit~~dI~~aia~g~--~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiI  281 (294)
T COG2524         206 APVVDD--DKIVGIITLSDIAKAIANGN--LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII  281 (294)
T ss_pred             CceecC--CceEEEEEHHHHHHHHHcCC--ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEE
Confidence            388886  59999999999999998875  35779999999999999999999999999999999999999899999999


Q ss_pred             cchhHHHHHHhh
Q 041526           81 TLEDVVEEIVGE   92 (252)
Q Consensus        81 TleDIleeIvGe   92 (252)
                      |..|||..|+|.
T Consensus       282 TrTDIL~~ia~~  293 (294)
T COG2524         282 TRTDILTRIAGL  293 (294)
T ss_pred             ehHHHHHHhhcc
Confidence            999999999863

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=3.5e-10  Score=87.00  Aligned_cols=86  Identities=21%  Similarity=0.273  Sum_probs=70.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++.++++|+++.+|+++.+..+. .....++.++|.+++.++++++++.++++.|.+.+.+.++|+|+ |.++|+
T Consensus        27 ~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gv  105 (114)
T cd04630          27 LVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGI  105 (114)
T ss_pred             EEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEE
Confidence            4788753368999999999987553321 11234688889888999999999999999999999999999998 999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus       106 i~~~dl~~  113 (114)
T cd04630         106 ISLTDIFL  113 (114)
T ss_pred             EEHHHhhc
Confidence            99999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=3.5e-10  Score=86.28  Aligned_cols=86  Identities=23%  Similarity=0.332  Sum_probs=72.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ +.++|+|+.+|++..+..+.. ....+.++|.+++..+++++++.++++.|.+++...++|+|++|.+.|++
T Consensus        27 ~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gil  104 (112)
T cd04624          27 VVVVDPD-ERPIGIVTERDIVRAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI  104 (112)
T ss_pred             EEEECCC-CCEEEEeeHHHHHHHHhccCC-CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEE
Confidence            4788764 789999999999877654432 23468888888999999999999999999998889999999999999999


Q ss_pred             cchhHHHH
Q 041526           81 TLEDVVEE   88 (252)
Q Consensus        81 TleDIlee   88 (252)
                      |..|++++
T Consensus       105 t~~dl~~~  112 (112)
T cd04624         105 SIRDLVRE  112 (112)
T ss_pred             EHHHhccC
Confidence            99999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.11  E-value=4.9e-10  Score=85.20  Aligned_cols=86  Identities=21%  Similarity=0.346  Sum_probs=72.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC-CCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE-YGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE-~G~~vGI   79 (252)
                      +||++++ ++++|+++.+||+..+.........++.++|.+++.++++++++.++++.|+..+.+.++|+|+ +|.++|+
T Consensus        27 ~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gv  105 (114)
T cd04613          27 FPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGI  105 (114)
T ss_pred             eeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEE
Confidence            5888764 7899999999998765443221224688899889999999999999999999999999999988 8999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus       106 vt~~di~~  113 (114)
T cd04613         106 LSRSDLLS  113 (114)
T ss_pred             EEhHHhhc
Confidence            99999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=5.6e-10  Score=85.24  Aligned_cols=86  Identities=24%  Similarity=0.392  Sum_probs=71.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|++.....+......++.++|.+++.+++.++++.++++.|++++.+.++|+|+.|.++|+|
T Consensus        27 ~~vvd~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvv  105 (113)
T cd04615          27 LPVVDD-KKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV  105 (113)
T ss_pred             EeEEcC-CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEE
Confidence            477765 3789999999999865433322223468888888899999999999999999999988899999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus       106 t~~dl~~  112 (113)
T cd04615         106 TEDDILR  112 (113)
T ss_pred             EHHHhhc
Confidence            9999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.09  E-value=5.8e-10  Score=86.54  Aligned_cols=86  Identities=24%  Similarity=0.312  Sum_probs=71.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc----------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL----------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL   70 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~----------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV   70 (252)
                      +||++++ ++++|+|+.+||+..+.....          .....+.++|.+.+.++++++++.++++.|.+.+.+..+|+
T Consensus        28 ~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv  106 (124)
T cd04600          28 LPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVV  106 (124)
T ss_pred             eeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEE
Confidence            5888764 789999999999876543210          11235788888889999999999999999999999999999


Q ss_pred             cCCCCEEEEEcchhHHH
Q 041526           71 NEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        71 DE~G~~vGIVTleDIle   87 (252)
                      |+.|.++|+||..|++.
T Consensus       107 ~~~g~~~Gvit~~di~~  123 (124)
T cd04600         107 DEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cCCCCEEEEEEhHHhhc
Confidence            98999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.08  E-value=9.9e-10  Score=83.30  Aligned_cols=84  Identities=21%  Similarity=0.392  Sum_probs=71.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+||+.....+.. ...++.++|.+++.++++++++.++++.|++.+.+.++|+|+.|.+.|+|
T Consensus        27 ~~V~~~--~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi  103 (111)
T cd04611          27 IVVVDD--GRPLGIVTERDILRLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLL  103 (111)
T ss_pred             EEEeeC--CEEEEEEeHHHHHHHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEE
Confidence            478776  789999999999876543221 23568888888899999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus       104 ~~~di~~  110 (111)
T cd04611         104 SQTDLLQ  110 (111)
T ss_pred             EhHHhhc
Confidence            9999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=1.1e-09  Score=83.36  Aligned_cols=84  Identities=26%  Similarity=0.340  Sum_probs=71.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++..+..+.  ...++.++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|++
T Consensus        27 ~~V~~~~-~~~~G~v~~~~l~~~~~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~i  103 (111)
T cd04639          27 FPVVDGD-GHLVGLLTRDDLIRALAEGG--PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLV  103 (111)
T ss_pred             ceEECCC-CcEEEEeeHHHHHHHHHhcC--CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEE
Confidence            5888763 68999999999987655432  23468888888999999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+.+
T Consensus       104 t~~dl~~  110 (111)
T cd04639         104 TLENVGE  110 (111)
T ss_pred             EHHHhhc
Confidence            9999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1.1e-09  Score=84.05  Aligned_cols=84  Identities=23%  Similarity=0.415  Sum_probs=68.5

Q ss_pred             eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCC--CcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDS--MSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~--~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      ||+++  ++++|+|+.+|++..+..+......++.++|.+++.+++++  .++.++++.|.+++.+.++|+|++|.++|+
T Consensus        29 ~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gv  106 (115)
T cd04620          29 LVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGL  106 (115)
T ss_pred             EEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEE
Confidence            55553  78999999999987654332112346888887788888887  789999999999999999999999999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus       107 it~~dl~~  114 (115)
T cd04620         107 VTAESIRQ  114 (115)
T ss_pred             EEhHHhhc
Confidence            99999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.07  E-value=1.3e-09  Score=82.86  Aligned_cols=82  Identities=18%  Similarity=0.321  Sum_probs=70.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+++.++++..+..+.    ..+.+++.+++.++++++++.++++.|++.+.+.++|+|+.|.+.|+|
T Consensus        28 ~~V~d~-~~~~~G~v~~~~l~~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v  102 (110)
T cd04605          28 LPVVDE-DGRLVGIVTSWDISKAVARDK----KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGII  102 (110)
T ss_pred             EEEECC-CCcEEEEEeHHHHHHHHhhCc----cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEE
Confidence            477765 379999999999987654332    247788888999999999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       103 ~~~di~~  109 (110)
T cd04605         103 TSEDISK  109 (110)
T ss_pred             EHHHhhh
Confidence            9999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.06  E-value=1.3e-09  Score=83.56  Aligned_cols=85  Identities=22%  Similarity=0.292  Sum_probs=70.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|++..+..+.. ...++.++|..++.++++++++.++++.|..++.+.++|+|+.|.++|+|
T Consensus        28 ~~v~d~-~~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi  105 (113)
T cd04607          28 VLVVDE-NGRLLGTVTDGDIRRALLKGLS-LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLA  105 (113)
T ss_pred             EEEECC-CCCEEEEEEcHHHHHHHhcCCC-cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEE
Confidence            366665 3789999999999876543322 13458888977888999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       106 t~~di~~  112 (113)
T cd04607         106 TLDDLLS  112 (113)
T ss_pred             EhHHhcc
Confidence            9999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.05  E-value=1.6e-09  Score=82.36  Aligned_cols=83  Identities=24%  Similarity=0.445  Sum_probs=70.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+|++.....+.  ...++.+++.+++.+++++.++.++++.|.+.+.+..+|+|++|.++|+|
T Consensus        27 ~~v~~~--~~~~G~v~~~~l~~~~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i  102 (110)
T cd04588          27 APVVDD--GKLVGIVTLSDIAHAIARGL--ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGII  102 (110)
T ss_pred             EEEeeC--CEEEEEEEHHHHHHHHhccc--cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEE
Confidence            477776  78999999999997654432  12467888878889999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       103 ~~~dl~~  109 (110)
T cd04588         103 TRTDILR  109 (110)
T ss_pred             EhHHhhc
Confidence            9999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=2e-09  Score=83.22  Aligned_cols=86  Identities=20%  Similarity=0.271  Sum_probs=71.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc---------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL---------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~---------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD   71 (252)
                      +||++++ ++++|+++.+|++..+.....         ....++.+++.+++.++++++++.++++.|++.+.+.++|+|
T Consensus        27 ~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04803          27 LPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD  105 (122)
T ss_pred             ccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence            5888753 789999999999876542210         023468888988899999999999999999999999999999


Q ss_pred             CCCCEEEEEcchhHHH
Q 041526           72 EYGGTVGVVTLEDVVE   87 (252)
Q Consensus        72 E~G~~vGIVTleDIle   87 (252)
                      ++|.++|+||..|++.
T Consensus       106 ~~~~~~Gvit~~dl~~  121 (122)
T cd04803         106 DKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCEEEEEEHHHhhc
Confidence            9899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.03  E-value=2e-09  Score=81.90  Aligned_cols=85  Identities=45%  Similarity=0.821  Sum_probs=70.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.+.++|+++.+||+.....+..  ...+..++ +++.++++++++.++++.|..++.+.++|+|+.|.++|+|
T Consensus        27 ~~v~~~~~~~~~G~v~~~~l~~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi  103 (111)
T cd04590          27 FPVYDGDLDNIIGVVHVKDLLRALAEGEE--DLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLV  103 (111)
T ss_pred             EEEECCCCceEEEEEEHHHHHHHHHcCCC--cCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEe
Confidence            47776533689999999999987653321  13466666 6889999999999999999999999999999999999999


Q ss_pred             cchhHHHH
Q 041526           81 TLEDVVEE   88 (252)
Q Consensus        81 TleDIlee   88 (252)
                      |..|+++|
T Consensus       104 t~~di~~~  111 (111)
T cd04590         104 TLEDILEE  111 (111)
T ss_pred             EHHHhhcC
Confidence            99999764

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.03  E-value=2.2e-09  Score=81.72  Aligned_cols=86  Identities=22%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.++++..+.........++.++|.+++.++++++++.++++.|..++.+.++|+|+.|.++|+|
T Consensus        28 ~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~i  106 (114)
T cd04604          28 TAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVL  106 (114)
T ss_pred             EEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEE
Confidence            4777753 789999999999876653321122358889988889999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..||+.
T Consensus       107 t~~di~~  113 (114)
T cd04604         107 HIHDLLR  113 (114)
T ss_pred             EHHHhhc
Confidence            9999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.02  E-value=2e-09  Score=81.94  Aligned_cols=84  Identities=26%  Similarity=0.410  Sum_probs=69.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+|++..+.........++.+++.+++.++++++++.++++.|++.+.+.++|+|+ |.++|++
T Consensus        27 i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gii  103 (111)
T cd04800          27 LLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVI  103 (111)
T ss_pred             EEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEE
Confidence            478876  7999999999998654332211234588888889999999999999999999999988999987 9999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       104 t~~di~~  110 (111)
T cd04800         104 SATDLLR  110 (111)
T ss_pred             EHHHhhc
Confidence            9999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=1.7e-09  Score=84.03  Aligned_cols=86  Identities=15%  Similarity=0.317  Sum_probs=66.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-ccccchhhh------hcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-LESTKVADM------AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~~~~~l~~~------~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||+++ .++++|+++.+||+..+..+.. ....++...      +..++.++++++++.++++.|.+++.+.++|+|++
T Consensus        27 ~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~  105 (120)
T cd04641          27 LPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN  105 (120)
T ss_pred             eeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC
Confidence            589876 4789999999999976543321 001123332      22456899999999999999999999999999998


Q ss_pred             CCEEEEEcchhHHH
Q 041526           74 GGTVGVVTLEDVVE   87 (252)
Q Consensus        74 G~~vGIVTleDIle   87 (252)
                      |.++|+||..|+++
T Consensus       106 ~~~~Givt~~di~~  119 (120)
T cd04641         106 KRVEGIISLSDILQ  119 (120)
T ss_pred             CCEEEEEEHHHhhc
Confidence            99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.02  E-value=2.9e-09  Score=80.69  Aligned_cols=84  Identities=20%  Similarity=0.350  Sum_probs=70.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+||+.....+.. ....+.+++.+++.++++++++.++++.|++++.+.++|+|+.|.+.|+|
T Consensus        27 ~~v~~~--~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i  103 (111)
T cd04612          27 YPVVDD--GRLVGIVTLADIRRVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV  103 (111)
T ss_pred             ceEeeC--CeEEEEEEHHHHHHHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEE
Confidence            588876  789999999999875543221 11246777888999999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       104 t~~di~~  110 (111)
T cd04612         104 SRSDLLR  110 (111)
T ss_pred             EHHHhhh
Confidence            9999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=2.3e-09  Score=82.72  Aligned_cols=86  Identities=14%  Similarity=0.227  Sum_probs=71.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHc-CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~-~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++ .++++|+|+.+|++..+.. .......++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+
T Consensus        27 ~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gv  105 (114)
T cd04619          27 VVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGV  105 (114)
T ss_pred             EEEECC-CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEE
Confidence            477765 3789999999999875543 11112356888998899999999999999999999999999999988999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|+++
T Consensus       106 i~~~dl~~  113 (114)
T cd04619         106 LNARDALK  113 (114)
T ss_pred             EEhHhhcc
Confidence            99999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.02  E-value=2.3e-09  Score=81.72  Aligned_cols=84  Identities=31%  Similarity=0.357  Sum_probs=69.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+|++..+..+......++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|+|
T Consensus        27 ~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~i  103 (111)
T cd04589          27 LLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVL  103 (111)
T ss_pred             EEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEE
Confidence            467765  6899999999998765433211234688889788999999999999999999999999999986 9999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus       104 t~~dl~~  110 (111)
T cd04589         104 EQTDLLS  110 (111)
T ss_pred             EhHHhhc
Confidence            9999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=2e-09  Score=82.05  Aligned_cols=84  Identities=18%  Similarity=0.327  Sum_probs=69.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+++.+|++........ ...++.++|.+++.++++++++.+++..|++++.+.++|+|+ |.++|+|
T Consensus        27 ~~v~d~-~~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~i  103 (111)
T cd04626          27 IIVKDN-EEKLKGVVTFTDILDLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVV  103 (111)
T ss_pred             EEEEcC-CCCEEEEEehHHhHHHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEE
Confidence            478865 4789999999999865433211 124588888888999999999999999999999999999998 9999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus       104 t~~di~~  110 (111)
T cd04626         104 RTKDILD  110 (111)
T ss_pred             EhHHhcc
Confidence            9999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.01  E-value=2.7e-09  Score=81.25  Aligned_cols=82  Identities=23%  Similarity=0.313  Sum_probs=70.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++.+|+|+..|++.....+.  ...++.++|.+++.++++++++.+++..|++.+.+.++|+| .|.++|+|
T Consensus        28 ~~V~d~--~~~~G~v~~~dl~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvv  102 (110)
T cd04595          28 LPVVEG--GRVVGIISRRDVEKALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIV  102 (110)
T ss_pred             eeEeeC--CEEEEEEEHHHHHHHHhccc--ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEE
Confidence            588876  78999999999987654321  23568888988999999999999999999999999899998 79999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       103 t~~di~~  109 (110)
T cd04595         103 TRTDLLR  109 (110)
T ss_pred             EhHHhhc
Confidence            9999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=2e-09  Score=84.03  Aligned_cols=86  Identities=14%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-c--c------cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-E--S------TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-~--~------~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD   71 (252)
                      +||++++.++++|+|+.+|+++.+..+... .  .      .....++.+++.++.+++++.++++.|.+++.+.++|+|
T Consensus        27 ~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (123)
T cd04627          27 VAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVD  106 (123)
T ss_pred             EEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC
Confidence            478876436899999999998765332100 0  0      011134567888999999999999999999999999999


Q ss_pred             CCCCEEEEEcchhHH
Q 041526           72 EYGGTVGVVTLEDVV   86 (252)
Q Consensus        72 E~G~~vGIVTleDIl   86 (252)
                      ++|.++|+||+.|+-
T Consensus       107 ~~~~~vGiit~~di~  121 (123)
T cd04627         107 NQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCcEEEEEeHHHhh
Confidence            999999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=2.5e-09  Score=84.57  Aligned_cols=85  Identities=25%  Similarity=0.416  Sum_probs=70.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc--------------------cchhhhhcCCceecCCCCcHHHHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES--------------------TKVADMAHKPAYFVPDSMSVWNLLREFR   60 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~--------------------~~l~~~~~r~~~~Vpe~~~l~~lL~~mr   60 (252)
                      +||+++ .++++|+++.+|++..+........                    .++.+++.+++.++++++++.++++.|.
T Consensus        27 ~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~  105 (132)
T cd04636          27 VPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMS  105 (132)
T ss_pred             cceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHH
Confidence            588875 3789999999999876543221111                    1677888888999999999999999999


Q ss_pred             HcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           61 IRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        61 ~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +.+.+.++|+|+ |.++|+||..|+++
T Consensus       106 ~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636         106 KKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            999999999998 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.00  E-value=2e-09  Score=82.64  Aligned_cols=84  Identities=19%  Similarity=0.211  Sum_probs=67.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||+++ .++++|+|+.+||+.......  ...++.++|..  ++..+.+++++.++++.|++++.+.++|+|+.|.++|
T Consensus        28 ~~V~d~-~~~~~G~v~~~dl~~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~G  104 (114)
T cd04801          28 FVVVDN-EGRYVGIISLADLRAIPTSQW--AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIG  104 (114)
T ss_pred             EEEEcC-CCcEEEEEEHHHHHHHHHhhc--cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEE
Confidence            478865 478999999999987654221  12457777742  2568999999999999999999999999998899999


Q ss_pred             EEcchhHHH
Q 041526           79 VVTLEDVVE   87 (252)
Q Consensus        79 IVTleDIle   87 (252)
                      +||..||+.
T Consensus       105 vl~~~di~~  113 (114)
T cd04801         105 LITEADLLR  113 (114)
T ss_pred             EEeccceec
Confidence            999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=3.1e-09  Score=82.43  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=69.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC---CC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~   75 (252)
                      +||.++ .++++|+|+.+|++.+...+.......+.++|.+  ++.++++++++.++++.|.+++.+..+|+|+.   |.
T Consensus        27 ~~V~d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~  105 (118)
T cd04617          27 LFVVDE-DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLE  105 (118)
T ss_pred             EEEEcC-CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccce
Confidence            467765 3679999999999877643322223457788854  67899999999999999999999999999887   68


Q ss_pred             EEEEEcchhHHH
Q 041526           76 TVGVVTLEDVVE   87 (252)
Q Consensus        76 ~vGIVTleDIle   87 (252)
                      ++|+||..|++.
T Consensus       106 l~Gvit~~~l~~  117 (118)
T cd04617         106 VIGRITKTNITK  117 (118)
T ss_pred             EEEEEEhhheec
Confidence            999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.99  E-value=3.7e-09  Score=81.11  Aligned_cols=85  Identities=26%  Similarity=0.323  Sum_probs=70.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc----------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL----------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL   70 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~----------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV   70 (252)
                      +||+++  ++++|+++.+|++........          ....++.++|.+++.++++++++.+++..|++.+.+.++|+
T Consensus        27 ~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv  104 (122)
T cd04585          27 LPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVV  104 (122)
T ss_pred             eeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEE
Confidence            588876  799999999999876532110          01245778888889999999999999999999999999999


Q ss_pred             cCCCCEEEEEcchhHHH
Q 041526           71 NEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        71 DE~G~~vGIVTleDIle   87 (252)
                      |++|.++|+||..|+++
T Consensus       105 ~~~~~~~Gvvt~~di~~  121 (122)
T cd04585         105 DDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcEEEEEEHHHhhh
Confidence            98899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.98  E-value=2.6e-09  Score=83.81  Aligned_cols=86  Identities=24%  Similarity=0.401  Sum_probs=67.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc-------------cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES-------------TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMA   67 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~-------------~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~A   67 (252)
                      +||++++ ++++|+|+.+|++.....+.....             ......+.+++.++++++++.++++.|.+++.+.+
T Consensus        27 i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l  105 (126)
T cd04642          27 LPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRV  105 (126)
T ss_pred             ccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEE
Confidence            5788764 789999999999875532211001             01123456788999999999999999999999999


Q ss_pred             EEecCCCCEEEEEcchhHHH
Q 041526           68 VVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        68 iVVDE~G~~vGIVTleDIle   87 (252)
                      +|+|++|.++|+||..|++.
T Consensus       106 ~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642         106 WVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             EEECCCCCEEEEEEHHHHhc
Confidence            99999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.98  E-value=3.6e-09  Score=79.91  Aligned_cols=83  Identities=28%  Similarity=0.344  Sum_probs=66.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+|+++.+.........++.+++.+++.++++++++.++++.|++ ..+ ++|+|+.|.++|+|
T Consensus        27 ~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~-~~vv~~~~~~~Gvv  102 (110)
T cd04609          27 LPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELSELLDR-GNV-AVVVDEGGKFVGII  102 (110)
T ss_pred             eeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CCc-eeEEecCCeEEEEE
Confidence            588875  78999999999997654332111245778888888999999999999999998 443 67888889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       103 t~~di~~  109 (110)
T cd04609         103 TRADLLK  109 (110)
T ss_pred             eHHHhhc
Confidence            9999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.98  E-value=3.2e-09  Score=80.95  Aligned_cols=82  Identities=24%  Similarity=0.337  Sum_probs=69.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.++++..  .    ...++.+++..++.++++++++.++++.|...+.+.++|+|++|.++|+|
T Consensus        28 ~~vvd~-~~~~~G~v~~~~l~~~--~----~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi  100 (109)
T cd04606          28 IYVVDE-EGRLLGVVSLRDLLLA--D----PDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGII  100 (109)
T ss_pred             EEEECC-CCCEEEEEEHHHHhcC--C----CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEE
Confidence            366764 3789999999999752  1    13458888877789999999999999999999999999999999999999


Q ss_pred             cchhHHHHH
Q 041526           81 TLEDVVEEI   89 (252)
Q Consensus        81 TleDIleeI   89 (252)
                      |..|+++++
T Consensus       101 t~~dll~~~  109 (109)
T cd04606         101 TVDDVIDVI  109 (109)
T ss_pred             EhHHhhhhC
Confidence            999999763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.98  E-value=2.2e-09  Score=81.71  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .+.++|+|+.+|++...      ...++.++|.+++.++++++++.++++.|...+...++|+|+.|.++|++
T Consensus        28 ~~V~d~-~~~~~G~v~~~~l~~~~------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~i  100 (108)
T cd04596          28 FPVVDE-KNKVVGIVTSKDVAGKD------PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGII  100 (108)
T ss_pred             eeEECC-CCeEEEEecHHHHhccc------ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEE
Confidence            588875 47899999999997531      12458888878889999999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus       101 t~~di~~  107 (108)
T cd04596         101 SRQDVLK  107 (108)
T ss_pred             EHHHhhc
Confidence            9999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.97  E-value=2.9e-09  Score=81.92  Aligned_cols=84  Identities=25%  Similarity=0.346  Sum_probs=69.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||.++ .++++|+|+.+|++.... .. ....++.++|..++.++++++++.++++.|.+++.+..+|+|+.|.++|+|
T Consensus        27 ~~V~d~-~~~~~G~v~~~dl~~~~~-~~-~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Gii  103 (111)
T cd04603          27 VVVVDE-ENKVLGQVTLSDLLEIGP-ND-YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTI  103 (111)
T ss_pred             EEEEcC-CCCEEEEEEHHHHHhhcc-cc-ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEE
Confidence            467765 478999999999986322 11 112457788888889999999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       104 t~~di~~  110 (111)
T cd04603         104 YERELLR  110 (111)
T ss_pred             EhHHhhc
Confidence            9999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.97  E-value=3.8e-09  Score=84.89  Aligned_cols=85  Identities=18%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-----------------------cccchhhhhcCCceecCCCCcHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-----------------------ESTKVADMAHKPAYFVPDSMSVWNLLR   57 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-----------------------~~~~l~~~~~r~~~~Vpe~~~l~~lL~   57 (252)
                      +||+++ .++++|+|+.+|++..+......                       ...++.++|.+++.++++++++.++++
T Consensus        27 l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~  105 (135)
T cd04621          27 VIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAK  105 (135)
T ss_pred             ceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccccHHHhcCCCCeEECCCCCHHHHHH
Confidence            588875 47899999999999765422110                       023588899778899999999999999


Q ss_pred             HHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           58 EFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        58 ~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      .|.+++.+.++|+|+ |.++|+||..|+++
T Consensus       106 ~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621         106 LMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             HHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            999999999999987 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.96  E-value=4.4e-09  Score=80.13  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc-cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES-TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~-~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++  ++++|+|+.+|++..+........ .++.++|.+++.++++++++.++++.|..++.+..+|+|++|.++|+
T Consensus        27 ~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gv  104 (113)
T cd04587          27 VLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGL  104 (113)
T ss_pred             EEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEE
Confidence            467765  789999999999854432211111 46888888888999999999999999999998888899988999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus       105 vs~~dl~~  112 (113)
T cd04587         105 LDVTKLTH  112 (113)
T ss_pred             EEHHHhcc
Confidence            99999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=2.4e-09  Score=81.67  Aligned_cols=85  Identities=22%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC--cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE--LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~--~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||+++ .++++|+|+.+|++..+....  .....++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|
T Consensus        27 ~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G  104 (114)
T cd04629          27 GPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVG  104 (114)
T ss_pred             ccEECC-CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEE
Confidence            578865 368999999999987553311  01234588888788899999999999999999999888889988 99999


Q ss_pred             EEcchhHHH
Q 041526           79 VVTLEDVVE   87 (252)
Q Consensus        79 IVTleDIle   87 (252)
                      +||..|++.
T Consensus       105 vit~~di~~  113 (114)
T cd04629         105 QISRRDVLR  113 (114)
T ss_pred             EEEHHHHhc
Confidence            999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.96  E-value=2.6e-09  Score=73.19  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=53.2

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++..+.+
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHHG
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhhC
Confidence            357888899999999999999999999999999999999999999999999998754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=7.5e-09  Score=77.10  Aligned_cols=86  Identities=24%  Similarity=0.338  Sum_probs=70.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+++.+|++.............+.+++..++.++++++++.++++.|...+.+.++|+|+.|.++|++
T Consensus        27 ~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i  105 (113)
T cd02205          27 LPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV  105 (113)
T ss_pred             EEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            4788764 799999999999876643221111125667878899999999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus       106 ~~~dl~~  112 (113)
T cd02205         106 TRSDILR  112 (113)
T ss_pred             EHHHhhc
Confidence            9999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.94  E-value=4.5e-09  Score=80.44  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=67.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCccc-----ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLE-----STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~-----~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~   75 (252)
                      +||+++ .++++|+|+.+|++..+.......     ..++.++|.+++.++++++++.+++..|.+.+  +++|+|++|.
T Consensus        27 ~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~  103 (116)
T cd04643          27 IPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGI  103 (116)
T ss_pred             eeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCe
Confidence            588875 468999999999987654321100     24578888778999999999999999998754  5788999999


Q ss_pred             EEEEEcchhHHH
Q 041526           76 TVGVVTLEDVVE   87 (252)
Q Consensus        76 ~vGIVTleDIle   87 (252)
                      ++|+||..|++.
T Consensus       104 ~~Gvit~~dil~  115 (116)
T cd04643         104 FIGIITRREILK  115 (116)
T ss_pred             EEEEEEHHHhhc
Confidence            999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.94  E-value=7e-09  Score=78.31  Aligned_cols=81  Identities=20%  Similarity=0.306  Sum_probs=68.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++.....+     .++.++|.+.+.++++++++.+++..|+..+.+.++|+|+.|.+.|+|
T Consensus        28 ~~v~d~~-~~~~G~v~~~dl~~~~~~~-----~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvi  101 (109)
T cd04583          28 LLVVDKD-NKLLGIVSLESLEQAYKEA-----KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI  101 (109)
T ss_pred             EEEEcCC-CcEEEEEEHHHHHHHhhcC-----CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEE
Confidence            4788763 7899999999998654321     347778878889999999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       102 t~~~l~~  108 (109)
T cd04583         102 TRSSLVD  108 (109)
T ss_pred             ehHHhhc
Confidence            9999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.94  E-value=7e-09  Score=78.98  Aligned_cols=85  Identities=29%  Similarity=0.415  Sum_probs=69.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHH-HHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDY-VQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~-~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++  ++++|+++.+|++.. +..+......++.++|.+.+.++++++++.++++.|+..+.+.++|+|+.|.+.|+
T Consensus        27 ~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~  104 (113)
T cd04622          27 LPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGI  104 (113)
T ss_pred             EEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEE
Confidence            478876  899999999998733 32222112234888888888999999999999999999999999999988999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|+++
T Consensus       105 it~~di~~  112 (113)
T cd04622         105 VSLGDLAR  112 (113)
T ss_pred             EEHHHhhc
Confidence            99999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.93  E-value=5.8e-09  Score=78.69  Aligned_cols=79  Identities=25%  Similarity=0.371  Sum_probs=67.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+||+..  .    ...++.++|...+.++++++++.++++.|++++.+.++|+|+.|.++|+|
T Consensus        28 ~~v~d~--~~~~g~v~~~~l~~~--~----~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi   99 (107)
T cd04610          28 FPVVDN--GKVVGIVSARDLLGK--D----PDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGII   99 (107)
T ss_pred             eeEeEC--CEEEEEEEHHHhhcc--C----ccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEE
Confidence            477775  789999999999853  1    12458888878889999999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus       100 ~~~di~~  106 (107)
T cd04610         100 TNTDVIR  106 (107)
T ss_pred             EHHHhhc
Confidence            9999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.93  E-value=5.6e-09  Score=80.76  Aligned_cols=86  Identities=22%  Similarity=0.308  Sum_probs=70.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC----Cc-----ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG----EL-----LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~----~~-----~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD   71 (252)
                      +||+++ .++++|+++.+|++......    ..     ....++.+++.+++.++++++++.+++..|++.+.+.++|+|
T Consensus        27 ~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd  105 (122)
T cd04635          27 LPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN  105 (122)
T ss_pred             ccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence            588865 47899999999998642100    00     013457788878889999999999999999999999999999


Q ss_pred             CCCCEEEEEcchhHHH
Q 041526           72 EYGGTVGVVTLEDVVE   87 (252)
Q Consensus        72 E~G~~vGIVTleDIle   87 (252)
                      ++|.+.|++|..|+++
T Consensus       106 ~~g~~~Gvit~~dl~~  121 (122)
T cd04635         106 EKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCcEEEEEEhHHhhc
Confidence            9999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.93  E-value=2.2e-09  Score=84.92  Aligned_cols=87  Identities=21%  Similarity=0.244  Sum_probs=69.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHH---------HcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR---------IRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr---------~~~~~~AiVVD   71 (252)
                      +||++++ ++++|+++.+|++..+..+......++.++|.+++.++.++.++.++.+.|.         ..+.+..+|+|
T Consensus        28 ~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~  106 (124)
T cd04608          28 LPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE  106 (124)
T ss_pred             EEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc
Confidence            5888753 7899999999998765433222346799999999999999999999998653         23566677888


Q ss_pred             CCCCEEEEEcchhHHHH
Q 041526           72 EYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        72 E~G~~vGIVTleDIlee   88 (252)
                      ++|.++||||..|++..
T Consensus       107 ~~~~~~Givt~~Dl~~~  123 (124)
T cd04608         107 KQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             cccceEEEEehhHhhhh
Confidence            88999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.91  E-value=5.3e-09  Score=83.05  Aligned_cols=85  Identities=25%  Similarity=0.371  Sum_probs=69.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC----------------------cccccchhhhhcCCceecCCCCcHHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE----------------------LLESTKVADMAHKPAYFVPDSMSVWNLLRE   58 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~----------------------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~   58 (252)
                      +||+++ .++++|+|+.+|++.....+.                      .....++.++|.+++.++++++++.+++..
T Consensus        28 ~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~  106 (135)
T cd04586          28 LPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAEL  106 (135)
T ss_pred             ceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHH
Confidence            588875 478999999999986532210                      001245788888889999999999999999


Q ss_pred             HHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           59 FRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        59 mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      |++.+.+..+|+| +|.++|+||..|+++
T Consensus       107 ~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586         107 MEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            9999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.90  E-value=9e-09  Score=80.69  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=68.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-------------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-------------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMA   67 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-------------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~A   67 (252)
                      +||++++ ++++|+++.+|++..+....             ......+.++|.+++.++++++++.+++..|.+.+.+.+
T Consensus        27 ~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~  105 (128)
T cd04632          27 LPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSV  105 (128)
T ss_pred             EEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeE
Confidence            5788764 78999999999986542110             001235788888889999999999999999999988888


Q ss_pred             EEec--CCCCEEEEEcchhHHH
Q 041526           68 VVLN--EYGGTVGVVTLEDVVE   87 (252)
Q Consensus        68 iVVD--E~G~~vGIVTleDIle   87 (252)
                      +|++  +.|.++|+||.+|+++
T Consensus       106 ~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632         106 VVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             eEeccCCCCcEEEEEEhHhhhc
Confidence            8773  4699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.90  E-value=5.2e-09  Score=78.67  Aligned_cols=78  Identities=24%  Similarity=0.305  Sum_probs=67.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+|++....      ...+.++|..++.++++++++.++++.|.+++...++|+|+ |.++|+|
T Consensus        27 ~~V~d~--~~~~Giv~~~~l~~~~~------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~i   97 (105)
T cd04599          27 LPVVED--GKLVGIITSRDVRRAHP------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGII   97 (105)
T ss_pred             EEEEEC--CEEEEEEehHHhhcccc------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEE
Confidence            478863  78999999999986421      23477888888999999999999999999999999999998 9999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus        98 t~~~l~~  104 (105)
T cd04599          98 TKGTIAL  104 (105)
T ss_pred             EHHHhcc
Confidence            9999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.89  E-value=7e-09  Score=78.72  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=65.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+++.+|++....       .++.++|...+.+++++.++.+++..|.+++.+.++|+|+ |.++|+|
T Consensus        27 ~~V~d~--~~~~G~v~~~~l~~~~~-------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvi   96 (104)
T cd04594          27 LPVVDY--NKFLGAVYLKDIENATY-------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIV   96 (104)
T ss_pred             EEEEEC--CEEEEEEEHHHHhhhcc-------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEE
Confidence            588875  78999999999985321       2356677788899999999999999999999999999984 9999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus        97 t~~dl~~  103 (104)
T cd04594          97 TLDSILD  103 (104)
T ss_pred             EHHHhhc
Confidence            9999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.89  E-value=7.4e-09  Score=81.36  Aligned_cols=86  Identities=22%  Similarity=0.325  Sum_probs=64.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHH-----HHcC-CcccccchhhhhcCCceec------CCCCcHHHHHHHHHHcCCceEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDY-----VQKG-ELLESTKVADMAHKPAYFV------PDSMSVWNLLREFRIRKVHMAV   68 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~-----~~~~-~~~~~~~l~~~~~r~~~~V------pe~~~l~~lL~~mr~~~~~~Ai   68 (252)
                      +||+++ .++++|+++.+|++..     ...+ ......++.++|.++...+      ++++++.++++.|.+++.+.++
T Consensus        27 ~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lp  105 (126)
T cd04640          27 LLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHAL  105 (126)
T ss_pred             EEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEE
Confidence            366664 4789999999999852     2221 1112345888885443332      3688999999999999999999


Q ss_pred             EecCC-CCEEEEEcchhHHH
Q 041526           69 VLNEY-GGTVGVVTLEDVVE   87 (252)
Q Consensus        69 VVDE~-G~~vGIVTleDIle   87 (252)
                      |+|+. |.++|+||..|++.
T Consensus       106 Vvd~~~~~~~G~it~~di~~  125 (126)
T cd04640         106 VVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             EEECCCCEEEEEEeHHHHhh
Confidence            99985 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.88  E-value=7.1e-09  Score=78.43  Aligned_cols=81  Identities=20%  Similarity=0.293  Sum_probs=66.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCC-CCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPD-SMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe-~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+++.++++....     ...++.++|...+.++.. ++++.++++.|++.+.+.++|+|+.|.++|+
T Consensus        28 ~~V~d~~-~~~~G~v~~~~l~~~~~-----~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gv  101 (110)
T cd04601          28 LPVVDDD-GKLVGIVTNRDLRFETD-----LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGL  101 (110)
T ss_pred             EEEEcCC-CEEEEEEEhhHeeeccc-----CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEE
Confidence            4788764 78999999999874321     134678888665566666 9999999999999999999999999999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|+++
T Consensus       102 i~~~dil~  109 (110)
T cd04601         102 ITVKDIEK  109 (110)
T ss_pred             EEhhhhhc
Confidence            99999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.87  E-value=1.4e-08  Score=76.58  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=66.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+++.+|++....       .++.+++.+.+.++++++++.++++.|.+++...++|+|+.|.++|+|
T Consensus        27 ~~v~d~-~g~~~Giv~~~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi   98 (106)
T cd04582          27 LTVVDA-DGQPLGFVTRREAARASG-------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEV   98 (106)
T ss_pred             EEEECC-CCCEEEEEeHHHHHHhcc-------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEE
Confidence            467764 478999999999986421       236677866778899999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus        99 ~~~~l~~  105 (106)
T cd04582          99 TQRSIAD  105 (106)
T ss_pred             EHHHhhc
Confidence            9999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.86  E-value=1.3e-08  Score=78.80  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=69.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC--------c--ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE--------L--LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL   70 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~--------~--~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV   70 (252)
                      +||+++  ++++|+++.++++..+....        .  ....++.++|.+++.++++++++.++++.|++++...++|+
T Consensus        27 ~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv  104 (122)
T cd04637          27 LLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVV  104 (122)
T ss_pred             EEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEE
Confidence            588885  78999999999987543210        0  01235778888889999999999999999999999999999


Q ss_pred             cCCCCEEEEEcchhHHH
Q 041526           71 NEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        71 DE~G~~vGIVTleDIle   87 (252)
                      |+.|.++|++|..|+++
T Consensus       105 ~~~~~~~Gvit~~dll~  121 (122)
T cd04637         105 DENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCCEEEEEEHHHhhh
Confidence            99899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=2e-08  Score=76.45  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=68.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++  ++++|+++.+|++..+..+. .....++.+++.+++.++++++++.++++.|.+.+.+.++|+|++ .++|+
T Consensus        27 ~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gv  103 (112)
T cd04802          27 LIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGI  103 (112)
T ss_pred             EEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEE
Confidence            478875  38999999999987553221 112345888887788899999999999999999999888999875 89999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus       104 i~~~di~~  111 (112)
T cd04802         104 VTTTDIVM  111 (112)
T ss_pred             EEhhhhhc
Confidence            99999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.84  E-value=1.3e-08  Score=78.52  Aligned_cols=84  Identities=24%  Similarity=0.376  Sum_probs=69.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC----------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE----------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL   70 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~----------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV   70 (252)
                      +||+++  ++++|+++..+++..+....          .....++.++|.+++.++++++++.+++..|.+.+.+.++|+
T Consensus        27 i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv  104 (121)
T cd04633          27 LPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVV  104 (121)
T ss_pred             eEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEE
Confidence            588875  79999999999986543211          001235778888889999999999999999999999999999


Q ss_pred             cCCCCEEEEEcchhHHH
Q 041526           71 NEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        71 DE~G~~vGIVTleDIle   87 (252)
                      |+ |.++|+||..|++.
T Consensus       105 ~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633         105 DD-GKLVGIVTRTDILR  120 (121)
T ss_pred             EC-CEEEEEEEHHHhhc
Confidence            98 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.84  E-value=1.3e-08  Score=77.57  Aligned_cols=70  Identities=16%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGI   79 (252)
                      +||++++.++++|+|+.+|++..+.                 +.++.+++++.++++.|.+++.+..+|+|+. |.++|+
T Consensus        27 ~~Vvd~~~~~~~Givt~~Dl~~~~~-----------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~gi   89 (98)
T cd04618          27 APLWDSRKQQFVGMLTITDFILILR-----------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYI   89 (98)
T ss_pred             EEEEeCCCCEEEEEEEHHHHhhhee-----------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEE
Confidence            5888764468999999999875311                 6789999999999999999999999999987 999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus        90 it~~d~~~   97 (98)
T cd04618          90 LTSRRILK   97 (98)
T ss_pred             eehhhhhc
Confidence            99999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.83  E-value=1.9e-08  Score=77.22  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=63.7

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||+++.  .++++|+|+.+|+......           +|.+++.++++++++.++++.|++++.+.++|++ .|.++|
T Consensus        28 ~~V~~~~~~~~~~~G~v~~~dl~~~~~~-----------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~G   95 (105)
T cd04591          28 FPVVDSTEESPRLVGYILRSQLVVALKN-----------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVG   95 (105)
T ss_pred             cceEcCCCCCCEEEEEEeHHHHHHHHHH-----------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEE
Confidence            5888753  3789999999999865421           5667888999999999999999999999999984 699999


Q ss_pred             EEcchhHHH
Q 041526           79 VVTLEDVVE   87 (252)
Q Consensus        79 IVTleDIle   87 (252)
                      +||..|+++
T Consensus        96 vvt~~dl~~  104 (105)
T cd04591          96 IITRKDLLK  104 (105)
T ss_pred             EEEhhhhhc
Confidence            999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.82  E-value=2.3e-08  Score=76.98  Aligned_cols=85  Identities=25%  Similarity=0.305  Sum_probs=68.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC---------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE---------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~---------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD   71 (252)
                      +||++++ ++++|+|+.++|+.......         .....++.++|..++.++++++++.++++.|++.+.+.++|+|
T Consensus        27 ~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~  105 (121)
T cd04584          27 LPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE  105 (121)
T ss_pred             ccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee
Confidence            5788764 78999999999986432100         0112457788888899999999999999999999988889998


Q ss_pred             CCCCEEEEEcchhHHH
Q 041526           72 EYGGTVGVVTLEDVVE   87 (252)
Q Consensus        72 E~G~~vGIVTleDIle   87 (252)
                      + |.++|+||..|+++
T Consensus       106 ~-~~~~Gvv~~~di~~  120 (121)
T cd04584         106 D-GRLVGIITETDLLR  120 (121)
T ss_pred             C-CEEEEEEEHHHhhc
Confidence            7 99999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.81  E-value=2.2e-08  Score=75.82  Aligned_cols=79  Identities=25%  Similarity=0.354  Sum_probs=66.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+++.++++...  .    ...+.++|.+++.++++++++.+++..|++++.+.++|+|. |.++|+|
T Consensus        27 ~~v~~~~-~~~~g~v~~~~l~~~~--~----~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~i   98 (106)
T cd04638          27 VPVVKKS-GELVGIITRKDLLRNP--E----EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIV   98 (106)
T ss_pred             EEEEcCC-CcEEEEEEHHHHHhcc--c----cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEE
Confidence            4788764 7899999999997421  1    13467778788899999999999999999999999999985 8999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|+++
T Consensus        99 t~~d~~~  105 (106)
T cd04638          99 TVADIVR  105 (106)
T ss_pred             EHHHhhc
Confidence            9999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.81  E-value=2.9e-08  Score=76.39  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCC--CCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPD--SMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe--~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||+++.  .++++|+|+.+|++... ..    ..++.++|.+.+..+..  ++++.++++.|+.++.+..+|+|+.|.+
T Consensus        28 ~~V~d~~~~~~~~~G~v~~~dl~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~  102 (114)
T cd04602          28 IPVTEDGKSGGKLLGIVTSRDIDFLT-DS----ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGEL  102 (114)
T ss_pred             eEEeeCCCcCCEEEEEEEhHHhhhhh-cc----CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeE
Confidence            4777752  47899999999987432 21    23478888766666745  9999999999999999999999999999


Q ss_pred             EEEEcchhHHH
Q 041526           77 VGVVTLEDVVE   87 (252)
Q Consensus        77 vGIVTleDIle   87 (252)
                      +|+||..|+++
T Consensus       103 ~Gvit~~di~~  113 (114)
T cd04602         103 VALVTRSDLKK  113 (114)
T ss_pred             EEEEEHHHhhc
Confidence            99999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.78  E-value=2.7e-08  Score=96.12  Aligned_cols=84  Identities=18%  Similarity=0.248  Sum_probs=70.9

Q ss_pred             eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526            2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT   81 (252)
Q Consensus         2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT   81 (252)
                      ||.+ +.++++|+|+.+|++.+  .    ...++.++|.+++.++++++++.++++.|++++.+.++|+|++|.++|+||
T Consensus       171 ~Vvd-~~~~l~GvV~l~dLl~a--~----~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt  243 (449)
T TIGR00400       171 YVTN-ESKHLKGVLSIRDLILA--K----PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVT  243 (449)
T ss_pred             EEEC-CCCeEEEEEEHHHHhcC--C----CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEE
Confidence            3444 35789999999999753  1    134688999777888999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhh
Q 041526           82 LEDVVEEIVGE   92 (252)
Q Consensus        82 leDIleeIvGe   92 (252)
                      .+|+++.+..+
T Consensus       244 ~~Dil~~l~~~  254 (449)
T TIGR00400       244 VDDIIDVIQSE  254 (449)
T ss_pred             HHHHHHHHHhh
Confidence            99999988543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=4.2e-08  Score=79.23  Aligned_cols=84  Identities=25%  Similarity=0.377  Sum_probs=69.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc--------------------------------ccccchhhhhcCCceecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL--------------------------------LESTKVADMAHKPAYFVPD   48 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~--------------------------------~~~~~l~~~~~r~~~~Vpe   48 (252)
                      +||+++  ++++|+++.+|++..+.....                                ....++.++|.+++.++++
T Consensus        27 ~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~  104 (143)
T cd04634          27 APVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISP  104 (143)
T ss_pred             ceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECC
Confidence            588885  789999999999876532110                                0123577788888999999


Q ss_pred             CCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           49 SMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        49 ~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ++++.+++..|++.+.+.++|+|. |.++|+||..|+++
T Consensus       105 ~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634         105 DASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            999999999999999988889987 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=6.3e-08  Score=73.68  Aligned_cols=78  Identities=19%  Similarity=0.268  Sum_probs=64.7

Q ss_pred             CCEEEEEEHHHHhHHHHcC-CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526            9 DNIVGIAYAMDLLDYVQKG-ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus         9 d~IvGiv~~kDll~~~~~~-~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ++++|+++.+|++..+... ......++.++|..++.++++++++.++++.|..++....+|+|+ |.++|+||..|++.
T Consensus        33 ~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~  111 (112)
T cd04625          33 GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK  111 (112)
T ss_pred             CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence            7899999999998765432 111124588888777889999999999999999999988889985 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.73  E-value=6.2e-08  Score=74.52  Aligned_cols=85  Identities=16%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC---CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCC---ceEEEecCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG---ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKV---HMAVVLNEYG   74 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~---~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~---~~AiVVDE~G   74 (252)
                      +||+++  ++++|+|+.+|++.++...   ......++.++|..++.++++++++.+++..|.+.+.   ..++|+|+.|
T Consensus        28 ~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~  105 (119)
T cd04598          28 LAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG  105 (119)
T ss_pred             EEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCC
Confidence            478876  8999999999998654321   0001345888898888999999999999999988764   2345788889


Q ss_pred             CEEEEEcchhHHH
Q 041526           75 GTVGVVTLEDVVE   87 (252)
Q Consensus        75 ~~vGIVTleDIle   87 (252)
                      .++|+||..|++.
T Consensus       106 ~~~Gvvs~~di~~  118 (119)
T cd04598         106 RYLGIGTVKDLLR  118 (119)
T ss_pred             eEEEEEEHHHHhc
Confidence            9999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.71  E-value=7.8e-08  Score=88.16  Aligned_cols=86  Identities=20%  Similarity=0.261  Sum_probs=73.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|+...+..+.. ...++.++|.+++.+++++.++.++++.|.+++....+|+|+.|.++|+|
T Consensus       233 ~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvI  310 (321)
T PRK11543        233 VAVCDA-QQQVQGVFTDGDLRRWLVGGGA-LTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAI  310 (321)
T ss_pred             EEEEcC-CCcEEEEecHHHHHHHHhCCCC-cCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence            578875 3789999999999876544321 23458899988899999999999999999999999999999889999999


Q ss_pred             cchhHHHH
Q 041526           81 TLEDVVEE   88 (252)
Q Consensus        81 TleDIlee   88 (252)
                      |..|++.+
T Consensus       311 t~~di~~~  318 (321)
T PRK11543        311 NLQDFYQA  318 (321)
T ss_pred             EHHHHHhc
Confidence            99999864

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.70  E-value=5.2e-08  Score=95.04  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=72.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++ .++++|+|+.+||+...  .   ...++.++|. +++.++++++++.++++.|.+++.+.++|+|++|.++|+
T Consensus       121 lpVvd~-~g~lvGiVt~~DL~~~~--~---~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGi  194 (486)
T PRK05567        121 VPVVDE-NGKLVGIITNRDVRFET--D---LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGL  194 (486)
T ss_pred             EEEEcc-CCEEEEEEEHHHhhhcc--c---CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            589985 57999999999997432  1   1346888887 788999999999999999999999999999999999999


Q ss_pred             EcchhHHHHH
Q 041526           80 VTLEDVVEEI   89 (252)
Q Consensus        80 VTleDIleeI   89 (252)
                      ||..||++.+
T Consensus       195 IT~~DLl~~~  204 (486)
T PRK05567        195 ITVKDIEKAE  204 (486)
T ss_pred             EEhHHhhhhh
Confidence            9999999886

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=1.1e-07  Score=71.91  Aligned_cols=69  Identities=14%  Similarity=0.288  Sum_probs=59.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+++.+|++...                 .+.++.++.++.++++.|++++.+.++|+|+.|.++|+|
T Consensus        27 ~~V~d~-~~~~~Giv~~~dl~~~~-----------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Gii   88 (96)
T cd04614          27 LPVLDD-DGKLSGIITERDLIAKS-----------------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLL   88 (96)
T ss_pred             EEEECC-CCCEEEEEEHHHHhcCC-----------------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEE
Confidence            478865 37899999999997421                 167899999999999999999999999999889999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..|++.
T Consensus        89 t~~di~~   95 (96)
T cd04614          89 RDHDLLK   95 (96)
T ss_pred             EHHHhhc
Confidence            9999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.63  E-value=1.9e-07  Score=85.95  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526            2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT   81 (252)
Q Consensus         2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT   81 (252)
                      ||+++ .++++|+|+.+|+.+.+..+......++.++|.+++.++.+++++.++++.|.+++.+..+|+| .|.++|+||
T Consensus       239 vVvd~-~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit  316 (326)
T PRK10892        239 VICDD-NMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLH  316 (326)
T ss_pred             EEEcC-CCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEE
Confidence            45554 4789999999999876544322223568999988999999999999999999999999889887 489999999


Q ss_pred             chhHHHH
Q 041526           82 LEDVVEE   88 (252)
Q Consensus        82 leDIlee   88 (252)
                      ..|++..
T Consensus       317 ~~dil~~  323 (326)
T PRK10892        317 MHDLLRA  323 (326)
T ss_pred             hHHhHhc
Confidence            9999864

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.62  E-value=1.2e-07  Score=86.62  Aligned_cols=91  Identities=23%  Similarity=0.396  Sum_probs=75.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC-----CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG-----ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~-----~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~   75 (252)
                      +||.+++ .+++|+|..+||+......     .......++.+|..++.++.++++..+++..|...+.|..+|+|+.|.
T Consensus       279 LPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~  357 (382)
T COG3448         279 LPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK  357 (382)
T ss_pred             ccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence            6999874 6899999999998621110     011234577889889999999999999999999999999999999999


Q ss_pred             EEEEEcchhHHHHHHhh
Q 041526           76 TVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        76 ~vGIVTleDIleeIvGe   92 (252)
                      ++||||..|++.++...
T Consensus       358 lvGIvsQtDliaal~r~  374 (382)
T COG3448         358 LVGIVSQTDLIAALYRN  374 (382)
T ss_pred             EEEEeeHHHHHHHHHHH
Confidence            99999999999998654

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.57  E-value=2.7e-07  Score=91.46  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC--CCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY--GGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~--G~~vG   78 (252)
                      +||+++ .++++|+|+.+|+.+.+.........++.++|.+++.++++++++.++++.|.+++.+..+|+|+.  |.++|
T Consensus       481 ~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liG  559 (574)
T PRK01862        481 LYVVDD-DGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAG  559 (574)
T ss_pred             EEEEcC-CCeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEE
Confidence            478875 368999999999987554332212346888998888999999999999999999999888889876  47999


Q ss_pred             EEcchhHHHHHH
Q 041526           79 VVTLEDVVEEIV   90 (252)
Q Consensus        79 IVTleDIleeIv   90 (252)
                      +||..|+++++.
T Consensus       560 vIt~~DIl~~l~  571 (574)
T PRK01862        560 VVYKTSLLDAYR  571 (574)
T ss_pred             EEEHHHHHHHHH
Confidence            999999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.54  E-value=2.2e-07  Score=86.56  Aligned_cols=82  Identities=23%  Similarity=0.342  Sum_probs=75.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      |||++.. -.++|+|+.||++...      ++.++..+|.+.|++|..++++..+-+.|--....|.+|+|++..++|+|
T Consensus       224 fPVvn~~-~kvvGvVt~rDv~~~~------~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGii  296 (432)
T COG4109         224 FPVVNRS-MKVVGVVTMRDVLDKK------PSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGII  296 (432)
T ss_pred             cceeccc-ceEEEEEEehhhhcCC------CCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEE
Confidence            7999874 6899999999998532      35679999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHH
Q 041526           81 TLEDVVEEI   89 (252)
Q Consensus        81 TleDIleeI   89 (252)
                      |..|+++.+
T Consensus       297 tR~dvlk~l  305 (432)
T COG4109         297 TRQDVLKSL  305 (432)
T ss_pred             EHHHHHHHH
Confidence            999999997

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.54  E-value=3.6e-07  Score=87.69  Aligned_cols=85  Identities=21%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++..+..+......++.++|.+++.++++++++.+++..|++++  .++|+ +.|.++|+|
T Consensus       369 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~-~~g~liGvv  444 (454)
T TIGR01137       369 LPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVT-EEGKPIGVV  444 (454)
T ss_pred             EEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEE-ECCEEEEEE
Confidence            5888753 7899999999998766543211234688899888889999999999999998753  45555 469999999


Q ss_pred             cchhHHHHH
Q 041526           81 TLEDVVEEI   89 (252)
Q Consensus        81 TleDIleeI   89 (252)
                      |..||++.|
T Consensus       445 t~~dll~~l  453 (454)
T TIGR01137       445 TKIDLLSFL  453 (454)
T ss_pred             EHHHHHHhh
Confidence            999999876

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.46  E-value=1.3e-06  Score=66.66  Aligned_cols=83  Identities=27%  Similarity=0.394  Sum_probs=68.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHH-cCCceEEEecCCC-CEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI-RKVHMAVVLNEYG-GTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~-~~~~~AiVVDE~G-~~vG   78 (252)
                      +||.+.  ..++|+++.+|++.++..+... ..++..+|.+++.++.++.++.++++.|.. .+.+..+|+|+.+ .++|
T Consensus        33 ~~v~~~--~~l~Giit~~di~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvG  109 (117)
T COG0517          33 VPVVDD--GKLVGIITERDILRALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVG  109 (117)
T ss_pred             EEEeeC--CEEEEEEEHHHHHHHHhccCCc-cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEE
Confidence            366654  3699999999999887654321 114788887789999999999999999999 6999999999875 9999


Q ss_pred             EEcchhHH
Q 041526           79 VVTLEDVV   86 (252)
Q Consensus        79 IVTleDIl   86 (252)
                      ++|..|++
T Consensus       110 ivt~~di~  117 (117)
T COG0517         110 IITLSDIL  117 (117)
T ss_pred             EEEHHHcC
Confidence            99999974

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.45  E-value=6.7e-07  Score=87.74  Aligned_cols=84  Identities=18%  Similarity=0.099  Sum_probs=70.7

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||++++  .++++|+|+.+||....  .  ....++.++|++  ++.++++++++.++++.|.+++....+|+|+.|.+
T Consensus       131 vpVVD~~~~~gkLvGIVT~~DLr~~~--~--~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~L  206 (502)
T PRK07107        131 VAVTEDGTAHGKLLGIVTSRDYRISR--M--SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNL  206 (502)
T ss_pred             EEEEeCCCcCCEEEEEEEcHHhhccc--c--CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            5888752  46899999999986421  1  124568999965  67889999999999999999999999999999999


Q ss_pred             EEEEcchhHHHH
Q 041526           77 VGVVTLEDVVEE   88 (252)
Q Consensus        77 vGIVTleDIlee   88 (252)
                      +|+||..|++..
T Consensus       207 vGIIT~~Dilk~  218 (502)
T PRK07107        207 VYLVFRKDYDSH  218 (502)
T ss_pred             EEEEEhHHHHhc
Confidence            999999999984

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.45  E-value=9e-07  Score=86.90  Aligned_cols=108  Identities=19%  Similarity=0.093  Sum_probs=82.1

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCC--ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKP--AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~--~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||++++  .++++|+|+.+|+... ..    ...++.++|++.  +.++++++++.++++.|++++.+..+|+|+.|.+
T Consensus       134 lpVvD~~~~~GklvGIVT~~DL~~v-~~----~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~L  208 (505)
T PLN02274        134 VCVTETGTMGSKLLGYVTKRDWDFV-ND----RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGEL  208 (505)
T ss_pred             EEEEeCCCcCCeEEEEEEHHHHhhc-cc----cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            5888753  3689999999999643 21    235688999755  6799999999999999999999999999999999


Q ss_pred             EEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcCh
Q 041526           77 VGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSI  126 (252)
Q Consensus        77 vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L  126 (252)
                      +|+||..||+..+.  .+....           ......|.+++.+.+..
T Consensus       209 vGvITr~DIlk~~~--~p~~~~-----------~~~d~~~~l~vgaavg~  245 (505)
T PLN02274        209 VDLVTRTDVKRVKG--YPKLGK-----------PSVGKDGKLLVGAAIGT  245 (505)
T ss_pred             EEEEEHHHHHHHhh--CcCccc-----------cccCCCCCEEEEEEEcC
Confidence            99999999998862  111100           01124677888776654

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.43  E-value=7.3e-07  Score=87.01  Aligned_cols=82  Identities=21%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+||...  . .   ..++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+|
T Consensus       123 l~VVD~-~gklvGIVT~rDL~~~--~-~---~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGII  195 (479)
T PRK07807        123 VVVVDE-EGRPVGVVTEADCAGV--D-R---FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL  195 (479)
T ss_pred             EEEECC-CCeEEEEEeHHHHhcC--c-c---CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEE
Confidence            478765 4689999999998532  1 1   2458899999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHH
Q 041526           81 TLEDVVEEI   89 (252)
Q Consensus        81 TleDIleeI   89 (252)
                      |..||+...
T Consensus       196 T~~DIl~~~  204 (479)
T PRK07807        196 TRTGALRAT  204 (479)
T ss_pred             EHHHHHHHh
Confidence            999999854

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.40  E-value=1.1e-06  Score=86.17  Aligned_cols=84  Identities=15%  Similarity=0.154  Sum_probs=71.2

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||++++  .++++|+|+.+|+... . .   ...++.++|++  ++.++++++++.++++.|++++.+..+|+|+.|.+
T Consensus       130 vpVvd~~~~~gkLvGIVt~~DL~~~-~-~---~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~l  204 (495)
T PTZ00314        130 ILITVDGKVGGKLLGIVTSRDIDFV-K-D---KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGEL  204 (495)
T ss_pred             EEEEeCCccCCeEEEEEEHHHHhhc-c-c---CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence            5888753  3689999999998732 1 1   13568899965  78999999999999999999999999999999999


Q ss_pred             EEEEcchhHHHHH
Q 041526           77 VGVVTLEDVVEEI   89 (252)
Q Consensus        77 vGIVTleDIleeI   89 (252)
                      +|+||..||+...
T Consensus       205 iGIIT~~DIl~~~  217 (495)
T PTZ00314        205 VALVSRSDLKKNR  217 (495)
T ss_pred             EEEEEehHhhhcc
Confidence            9999999999864

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.35  E-value=2.7e-06  Score=75.79  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++..+..+.. ...++.++|.+++.++++++++.++++.|.+.+.+..+|+|+.|.++|+|
T Consensus       190 ~~Vvd~~-g~~~Givt~~dl~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI  267 (268)
T TIGR00393       190 AIVCDEN-NQLVGVFTDGDLRRALLGGGS-LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL  267 (268)
T ss_pred             EEEEeCC-CCEEEEEEcHHHHHHHhcCCc-ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence            4777753 789999999999876543221 23568899988999999999999999999999999999999989999998


Q ss_pred             c
Q 041526           81 T   81 (252)
Q Consensus        81 T   81 (252)
                      +
T Consensus       268 ~  268 (268)
T TIGR00393       268 H  268 (268)
T ss_pred             C
Confidence            5

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.31  E-value=2.3e-06  Score=83.51  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=69.1

Q ss_pred             eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526            2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT   81 (252)
Q Consensus         2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT   81 (252)
                      ||.++  ++++|+|+.+||...  .    ...++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+||
T Consensus       123 vVvD~--gklvGIVT~rDL~~~--~----~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT  194 (475)
T TIGR01303       123 VVILE--DRPVGLVTDSDLLGV--D----RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILT  194 (475)
T ss_pred             EEEEC--CEEEEEEEHHHhhcC--C----CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence            56664  579999999998532  1    124689999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHH
Q 041526           82 LEDVVEEI   89 (252)
Q Consensus        82 leDIleeI   89 (252)
                      ..||+...
T Consensus       195 ~~DLl~~~  202 (475)
T TIGR01303       195 RTGALRAT  202 (475)
T ss_pred             HHHHHHHH
Confidence            99999754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.28  E-value=4.1e-06  Score=70.51  Aligned_cols=86  Identities=26%  Similarity=0.415  Sum_probs=70.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC-CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG-ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~-~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||.++  |.++|-|+-.++.+++.++ +......++++|..+.+.|.++.++..+-..+..+  +.++|+ +.|.++||
T Consensus        99 lPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGI  173 (187)
T COG3620          99 LPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGI  173 (187)
T ss_pred             CceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEE
Confidence            699987  7999999999999887655 43445678899999999999999998777666543  445556 88999999


Q ss_pred             EcchhHHHHHHh
Q 041526           80 VTLEDVVEEIVG   91 (252)
Q Consensus        80 VTleDIleeIvG   91 (252)
                      ||-.||+..+.|
T Consensus       174 ITk~DI~k~~~~  185 (187)
T COG3620         174 ITKADIMKLLAG  185 (187)
T ss_pred             EeHHHHHHHHhc
Confidence            999999988765

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.16  E-value=6.3e-06  Score=80.83  Aligned_cols=84  Identities=21%  Similarity=0.333  Sum_probs=71.5

Q ss_pred             EEecCCCCEEEEEEHHHHhHHHHc-CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526            3 VFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT   81 (252)
Q Consensus         3 V~~~~~d~IvGiv~~kDll~~~~~-~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT   81 (252)
                      |.+. .+...|||+.||+..+... +.. ...+++++|+.|++.|..+..+.+++-.|-+++.+..+|. |.|.++||||
T Consensus       185 ~l~~-~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt  261 (610)
T COG2905         185 VLDD-SGPLLGIVTRKDLRSRVIADGRS-KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILT  261 (610)
T ss_pred             EEcC-CCCccceeehHHHHHHHHhcCCC-cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEee
Confidence            3443 3678999999999987643 432 3567999999999999999999999999999999999988 6799999999


Q ss_pred             chhHHHHH
Q 041526           82 LEDVVEEI   89 (252)
Q Consensus        82 leDIleeI   89 (252)
                      +.||+...
T Consensus       262 ~~dIl~l~  269 (610)
T COG2905         262 LTDILRLF  269 (610)
T ss_pred             HHHHHHhh
Confidence            99999753

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=98.13  E-value=2.4e-06  Score=83.79  Aligned_cols=98  Identities=41%  Similarity=0.520  Sum_probs=82.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +|||+.+..+++|.+..+.++..+.........++...+.+....+|+++++.+.+..|++.+.||++|.. +....|++
T Consensus       241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~  319 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL  319 (498)
T ss_pred             eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE
Confidence            69999888888988888888876643222334567778889999999999999999999999999999986 67899999


Q ss_pred             cchhHHHHHHhhhccCCCcH
Q 041526           81 TLEDVVEEIVGEIFDESDSK  100 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~  100 (252)
                      |++|+ +++++++.||.+..
T Consensus       320 ~l~~~-~~~~~ev~de~d~~  338 (498)
T KOG2118|consen  320 TLEDL-EEVVKEVEDEEDKE  338 (498)
T ss_pred             eccch-hhhcceeccccccc
Confidence            99999 88889999988643

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=98.10  E-value=4e-06  Score=80.35  Aligned_cols=136  Identities=12%  Similarity=0.181  Sum_probs=104.5

Q ss_pred             eecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCC
Q 041526           44 YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDAN  123 (252)
Q Consensus        44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~  123 (252)
                      ...|+++.+..+++.=|.-+.+-...+ +.|+++.++-.+--.+.+ ++++.+..+..        ...+..|.|.++++
T Consensus       433 l~~p~~~~~~~v~Rd~q~i~p~g~t~l-~~gD~l~v~~~~~d~~~l-~~Lf~s~~~~~--------~~a~ffg~f~~e~~  502 (574)
T COG3263         433 LRMPKWTRIAAVFRDGQLIHPQGSTRL-REGDVLCVIGSERDLRAL-GKLFSSAPPVA--------LDARFFGDFILEPS  502 (574)
T ss_pred             ccCCccceeeeEEecCceeccCCCcee-ecCCEEEEEeccccHHHH-HHHHhcCCCcc--------chhhhhcchhhCcc
Confidence            567777777777766665555555555 458888888777666665 56554332111        12457899999999


Q ss_pred             cChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEe
Q 041526          124 TSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAG  203 (252)
Q Consensus       124 ~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~  203 (252)
                      ....+++-.||.+.-+.+...|+++++..++|..|..||++++                           +++.++|.+.
T Consensus       503 ~~~~~~~~~yg~~~~~~d~~~~~~~~i~~~lg~~~v~~Drv~~---------------------------~~l~~~v~~~  555 (574)
T COG3263         503 AKAADVALAYGLGDGYADKAQTLGELVTQLLGGAPVLGDRVEF---------------------------GGLIWTVAEK  555 (574)
T ss_pred             hhhhHHHHHhCCCCChhhhhhcHHHHHHHHhCCCceeeeeEEE---------------------------ccEEEEEeec
Confidence            9999999999987433345789999999999999999999999                           6999999999


Q ss_pred             cCCeeeEEEEEEc
Q 041526          204 NARKVSAVRFERI  216 (252)
Q Consensus       204 ~~~ri~~V~i~~~  216 (252)
                      +++||.++.++..
T Consensus       556 ~d~~it~ig~~~~  568 (574)
T COG3263         556 EDNRVTKIGVRVE  568 (574)
T ss_pred             ccCeeeeeeeecc
Confidence            9999999999744

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.90  E-value=2.7e-05  Score=75.48  Aligned_cols=81  Identities=19%  Similarity=0.281  Sum_probs=70.8

Q ss_pred             eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526            2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT   81 (252)
Q Consensus         2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT   81 (252)
                      .|++. .++++|++..++|+.+-      +...+.++|.+.+.+|+..+...++.+.|++.+.-.++|||+.|.++|+||
T Consensus       172 yVvD~-~~~L~Gvvsl~~Ll~a~------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~it  244 (451)
T COG2239         172 YVVDE-KGKLLGVVSLRDLLTAE------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIIT  244 (451)
T ss_pred             EEECC-ccceEEEeeHHHHhcCC------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeee
Confidence            45555 35799999999998431      245689999888999999999999999999999999999999999999999


Q ss_pred             chhHHHHH
Q 041526           82 LEDVVEEI   89 (252)
Q Consensus        82 leDIleeI   89 (252)
                      .+|+++.|
T Consensus       245 iDDiidvi  252 (451)
T COG2239         245 IDDIIDVI  252 (451)
T ss_pred             HHHHHHHH
Confidence            99999876

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.88  E-value=3.7e-05  Score=48.51  Aligned_cols=47  Identities=23%  Similarity=0.337  Sum_probs=42.4

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +.++++++++.+++..|+..+.+.++|+++.|.+.|++|..+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            56789999999999999999999999999889999999999997654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.85  E-value=6.5e-05  Score=60.63  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=54.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc-----------cchhhhh---------cCCceecCCCCcHHHHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES-----------TKVADMA---------HKPAYFVPDSMSVWNLLREFR   60 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~-----------~~l~~~~---------~r~~~~Vpe~~~l~~lL~~mr   60 (252)
                      +||+++ .++++|+|+.+||+.++........           ..+.+++         .+++.++.+++++.++++.|.
T Consensus        27 ~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~  105 (133)
T cd04592          27 VLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLME  105 (133)
T ss_pred             EEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHH
Confidence            588875 3789999999999987653321100           0123344         367889999999999999999


Q ss_pred             HcCCceEEEecCCC
Q 041526           61 IRKVHMAVVLNEYG   74 (252)
Q Consensus        61 ~~~~~~AiVVDE~G   74 (252)
                      +++.+.++|+|+.+
T Consensus       106 ~~~~~~lPVvd~~~  119 (133)
T cd04592         106 AKGVKQLPVVKRGV  119 (133)
T ss_pred             HcCCCcCCEecCCc
Confidence            99999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.83  E-value=3.9e-05  Score=59.72  Aligned_cols=55  Identities=18%  Similarity=0.306  Sum_probs=49.8

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      .++.++|.+.+.++++++++.++++.|+..+.+..+|+|+.|.++|+||..||..
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            4588888888999999999999999999999888999999899999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.78  E-value=0.00016  Score=68.29  Aligned_cols=82  Identities=18%  Similarity=0.270  Sum_probs=67.3

Q ss_pred             EEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcc
Q 041526            3 VFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTL   82 (252)
Q Consensus         3 V~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTl   82 (252)
                      |++. .++..|+|..+++..+....     ..+.+.+.....++++++++.+++..|..+..+ .+|+|+.|.++|+||.
T Consensus       278 ~~~~-~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~  350 (363)
T TIGR01186       278 VVDR-QNKLVGVVDVESIKQARKKA-----QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTR  350 (363)
T ss_pred             EEcC-CCCEEEEEeHHHHHHHhhcC-----CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEH
Confidence            4443 36899999999988665432     235566667778999999999999999999988 7788999999999999


Q ss_pred             hhHHHHHHh
Q 041526           83 EDVVEEIVG   91 (252)
Q Consensus        83 eDIleeIvG   91 (252)
                      .+++.++.+
T Consensus       351 ~~~~~~~~~  359 (363)
T TIGR01186       351 GSLVDALYD  359 (363)
T ss_pred             HHHHHHHHh
Confidence            999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=0.00018  Score=68.82  Aligned_cols=83  Identities=14%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526            2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT   81 (252)
Q Consensus         2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT   81 (252)
                      .|+++ .++++|+|+.+++......+     ..+.+.+.....+|++++++.+++..|...... .+|+|+.|.++|+||
T Consensus       312 ~~~~~-~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~  384 (400)
T PRK10070        312 YVIER-GNKFVGAVSIDSLKTALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIIS  384 (400)
T ss_pred             EEEcC-CCcEEEEEeHHHHHhhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEE
Confidence            35554 47899999999997654432     235566667778999999999999999997777 777899999999999


Q ss_pred             chhHHHHHHh
Q 041526           82 LEDVVEEIVG   91 (252)
Q Consensus        82 leDIleeIvG   91 (252)
                      ..+++..|.+
T Consensus       385 ~~~~~~~~~~  394 (400)
T PRK10070        385 KGMLLRALDR  394 (400)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.71  E-value=0.00032  Score=55.17  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=60.7

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEE
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV  120 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v  120 (252)
                      +++.+++++.++.++++.|++++....+|+|+.|.++|+||..|++..+...-.+....-.++.         ......+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im---------~~~~~~v   72 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKAL---------YKQFKRV   72 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHh---------hccceec
Confidence            5678999999999999999998888899999989999999999999876543322111111211         1233457


Q ss_pred             eCCcChHHhHhhc
Q 041526          121 DANTSIDQLSEDL  133 (252)
Q Consensus       121 ~G~~~L~dl~~~l  133 (252)
                      ....++.++.+.+
T Consensus        73 ~~~~~~~~v~~~~   85 (124)
T cd04608          73 NKNDTLGKLSRIL   85 (124)
T ss_pred             CCCCCHHHHHhhc
Confidence            7777777776643

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.71  E-value=0.00038  Score=52.64  Aligned_cols=48  Identities=23%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+.+++.++++.++++.|.+.+...++|+|+ |++.|++|.+|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~   49 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL   49 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence            4678899999999999999888888999998 99999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.69  E-value=0.00027  Score=65.09  Aligned_cols=57  Identities=21%  Similarity=0.282  Sum_probs=50.5

Q ss_pred             cchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           33 TKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        33 ~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      .+++++|.+  ++.++++++++.++++.|.+++...++|+|+.|.++|+||..|+...+
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~  260 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVF  260 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHH
Confidence            357889976  889999999999999999988888888889999999999999997643

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.66  E-value=0.0002  Score=68.25  Aligned_cols=93  Identities=18%  Similarity=0.328  Sum_probs=72.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccc---hhh------hhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTK---VAD------MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~---l~~------~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD   71 (252)
                      +||++.. ++.+|+....|+......+.. ....   +..      ....+++++..+.++..++..|..++.|.+.|||
T Consensus       263 lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  263 LPVVDEN-GKKVGNYSRFDVIHLAREGTY-NNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             ceEEcCC-CceecceehhhhhhhhhcCcc-CccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence            6999875 566999999999866544321 1111   111      1123468899999999999999999999999999


Q ss_pred             CCCCEEEEEcchhHHHHHHhhhcc
Q 041526           72 EYGGTVGVVTLEDVVEEIVGEIFD   95 (252)
Q Consensus        72 E~G~~vGIVTleDIleeIvGei~D   95 (252)
                      +.|.++|+||+.|++..++-.-..
T Consensus       341 ~~~~l~GvvSLsDil~~l~~~p~~  364 (381)
T KOG1764|consen  341 EDGVLVGVISLSDILSYLVLTPSG  364 (381)
T ss_pred             CCCcEEEEeeHHHHHHHHHhCccC
Confidence            999999999999999999865543

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.65  E-value=0.00019  Score=64.75  Aligned_cols=91  Identities=16%  Similarity=0.262  Sum_probs=73.2

Q ss_pred             cccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh-hccCCCcHHHHhhhccc
Q 041526           31 ESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE-IFDESDSKEEIQKKTGY  109 (252)
Q Consensus        31 ~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe-i~DE~d~~~~~~~~~~~  109 (252)
                      +..++.++|.++++++..++++.++.+.|.+++.+.|+|+|. +.++|++|+.||..+++.- +.-   .-.++++    
T Consensus       170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~---kV~~~M~----  241 (294)
T COG2524         170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDA---KVSDYMR----  241 (294)
T ss_pred             CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccc---cHHHHhc----
Confidence            346788999999999999999999999999999999999986 5999999999999999743 321   1223332    


Q ss_pred             EEEecCceEEEeCCcChHHhHhhcC
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDLN  134 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~lg  134 (252)
                           -+-+.+++...|.|.-+.+.
T Consensus       242 -----k~vitI~eDe~i~dAir~M~  261 (294)
T COG2524         242 -----KNVITINEDEDIYDAIRLMN  261 (294)
T ss_pred             -----cCCceEcCchhHHHHHHHHH
Confidence                 34578999999999776653

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.57  E-value=0.0002  Score=70.71  Aligned_cols=78  Identities=13%  Similarity=0.117  Sum_probs=66.8

Q ss_pred             CEEEEEEHHHHhHHHHcCCcccccchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           10 NIVGIAYAMDLLDYVQKGELLESTKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        10 ~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      ++.++++..|.+.....-.  ...++.++|. +++.++++++++.++++.|.+++.+..+|+|+.|.++|+||..|++..
T Consensus       225 ~i~ii~t~~dt~~t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        225 GVTVISTPYDTFTTARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP  302 (546)
T ss_pred             CCeEEEecccHHHHHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence            6889999999886543211  2467999998 789999999999999999999998999999999999999999999985


Q ss_pred             H
Q 041526           89 I   89 (252)
Q Consensus        89 I   89 (252)
                      .
T Consensus       303 ~  303 (546)
T PRK14869        303 V  303 (546)
T ss_pred             c
Confidence            4

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.54  E-value=0.00021  Score=53.71  Aligned_cols=49  Identities=18%  Similarity=0.238  Sum_probs=43.8

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +++..+.+++++.++++.|.+++...++|+|+.|.++|+||..|++...
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~   49 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS   49 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence            3567899999999999999988888999999999999999999998643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.0007  Score=52.12  Aligned_cols=49  Identities=27%  Similarity=0.460  Sum_probs=45.0

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      |+.++++++++.++++.|..++...++|+|+.|.++|+||..|++..+.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~   50 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence            5688999999999999999888889999998899999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.51  E-value=0.00058  Score=51.96  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=42.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcC-CceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRK-VHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~-~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +..++++++++.++++.|.+++ ...++|+|+.|.++|+||..|++....
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   51 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT   51 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            4678999999999999997665 678889998899999999999988653

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.50  E-value=0.0003  Score=56.72  Aligned_cols=50  Identities=16%  Similarity=0.102  Sum_probs=45.2

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      .+..+++++++.++++.|...+...++|+|+.|.++|+||..|++..+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            35789999999999999998888899999999999999999999998753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK05326 potassium/proton antiporter; Reviewed

Probab=97.49  E-value=0.00058  Score=67.78  Aligned_cols=99  Identities=13%  Similarity=0.191  Sum_probs=79.2

Q ss_pred             CCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHH
Q 041526           73 YGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCE  152 (252)
Q Consensus        73 ~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~  152 (252)
                      .|+.+-++...+-++.+...+... . ..       .......|.|.++|.+++.|+...||++++    ..|++.++.+
T Consensus       463 ~GD~l~l~~~~~~l~~l~~~f~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  529 (562)
T PRK05326        463 AGDVLLVLGPERDLPALERLFSQS-P-PG-------KLDQRFFGDFILEGDAKLADLALIYGLELD----QQTLGELIKQ  529 (562)
T ss_pred             CCCEEEEEECHHHHHHHHHHHhcc-c-cc-------ccccccccccccCcccchhHHHHHhccCcc----cccHHHHHHH
Confidence            477888888787777775544332 1 11       112346899999999999999999999875    6799999999


Q ss_pred             HhCCCCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEE
Q 041526          153 AFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFE  214 (252)
Q Consensus       153 ~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~  214 (252)
                      ++|+.|..||++.+                           +++.++|.+   .+|.+|.++
T Consensus       530 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~---~~~~~~~~~  561 (562)
T PRK05326        530 RLGGAPVVGDQVEL---------------------------GGIILTVAE---GRVTKVGLR  561 (562)
T ss_pred             hcCCCCCCCCEeee---------------------------cceEEEEec---Cceeeeeec
Confidence            99999999999999                           579999999   789998774

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.48  E-value=0.00087  Score=50.43  Aligned_cols=49  Identities=22%  Similarity=0.366  Sum_probs=44.0

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      |++..+++++++.++++.|++.+...++|+|+.|.+.|+||..|++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~   49 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL   49 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence            4567899999999999999988888899999889999999999998754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.46  E-value=0.00024  Score=53.84  Aligned_cols=47  Identities=13%  Similarity=0.165  Sum_probs=42.5

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEI   89 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeI   89 (252)
                      +.++++++++.++++.|++++.+.++|+|+. |.++|+||..|++..+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~   50 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL   50 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence            5789999999999999999999999999985 8899999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.45  E-value=0.0013  Score=50.12  Aligned_cols=49  Identities=22%  Similarity=0.397  Sum_probs=44.3

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++.+++++.++++.|++.+...++|+|+.|.++|+||..|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   50 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE   50 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence            4568899999999999999988889999999999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.0012  Score=49.81  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=43.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      ++.+++.++++.++++.|.+.+...++|+|+.|.++|+||..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~   49 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA   49 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence            468899999999999999998888899999989999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.43  E-value=0.0004  Score=51.94  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=42.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      ++.+++++.++.++++.|++.+.+.++|+|+.|.++|++|..|++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~   48 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA   48 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence            56789999999999999998888888899988999999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.42  E-value=0.00045  Score=52.88  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=43.9

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +.++++++++.+++..|.+.+...++|+|+.|.+.|+||..|++..+.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~   50 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG   50 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence            468899999999999999999999999999999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.40  E-value=0.00044  Score=53.57  Aligned_cols=49  Identities=22%  Similarity=0.374  Sum_probs=44.2

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIv   90 (252)
                      ++..+++++++.++++.|.+.+.+.++|+|+. |+++|+||..|++..+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~   51 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW   51 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence            56789999999999999998888899999987 99999999999988663

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.40  E-value=0.00049  Score=53.06  Aligned_cols=49  Identities=18%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++++++++.++++.|.+++.+..+|+|+.|.++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence            5678999999999999999999999999998899999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.38  E-value=0.0011  Score=60.86  Aligned_cols=58  Identities=21%  Similarity=0.176  Sum_probs=51.7

Q ss_pred             cchhhhhcCC--ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKP--AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~--~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+++++|.++  +.++++++++.++++.|+..+...++|+|+.|.++|+||..|+...+.
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~  256 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV  256 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence            4578899877  899999999999999999888889999999999999999999887553

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.00065  Score=51.78  Aligned_cols=50  Identities=20%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvG   91 (252)
                      ++..++.++++.++++.|++.+.+.++|+|+. |.++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~   52 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA   52 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence            46789999999999999998888889999987 999999999999987644

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.36  E-value=0.00057  Score=51.82  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=44.3

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+.+++.++++.++++.|++.+.+.++|+|+.|.++|+||..|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~   50 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK   50 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence            4578999999999999999988889999999899999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.0021  Score=47.31  Aligned_cols=52  Identities=21%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      ++.+++.+.++.++++.|.+.+.+.++|+|+.|.+.|+++..|++..+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~   53 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG   53 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc
Confidence            4578899999999999999988888999999899999999999998775543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00075  Score=50.70  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++..+.++.++++.|.+.+.+.++|+|+.|.++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~   50 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA   50 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence            4678899999999999999888889999999899999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00065  Score=52.88  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      ++..++.++++.++++.|.+.+.+.++|+|+.|.+.|+||..|++..+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~   49 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV   49 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            456789999999999999999999999999999999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.30  E-value=0.0016  Score=57.95  Aligned_cols=58  Identities=24%  Similarity=0.315  Sum_probs=51.6

Q ss_pred             cchhhhhcCC-ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKP-AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~-~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .++.++|.++ +..++++.++.++++.|.+.+...++|+|+.|.++|+||..|++..+.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            3577888777 899999999999999999888889999999999999999999988653

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.30  E-value=0.00083  Score=50.54  Aligned_cols=49  Identities=20%  Similarity=0.323  Sum_probs=44.1

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +++..++.+.++.++++.|.+++.+.++|+|+.|.++|++|..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   50 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV   50 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence            5678899999999999999988888888999889999999999998654

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.29  E-value=0.00053  Score=67.68  Aligned_cols=60  Identities=20%  Similarity=0.245  Sum_probs=55.0

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      .++.++|.+++.++++++++.++++.|++++.+..+|+|+.|.++|+||..|+...+...
T Consensus        68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~  127 (546)
T PRK14869         68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI  127 (546)
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence            468899989999999999999999999999999999999999999999999999987653

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.27  E-value=0.00065  Score=53.01  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      ++.+++.++++.++++.|+..+.+.++|+|+.|.++|+||..|+...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGE   48 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhC
Confidence            46789999999999999998888999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.26  E-value=0.001  Score=50.21  Aligned_cols=50  Identities=22%  Similarity=0.308  Sum_probs=44.4

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++..++.+.++.++++.|.+.+...++|+|+.|.++|+||..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~   51 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA   51 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence            56789999999999999998888888999988999999999999887643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.26  E-value=0.0017  Score=62.40  Aligned_cols=58  Identities=21%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .++.++|.+++..+++++++.++++.|++++...++|+|+.|.++|+||..|++..+.
T Consensus       335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF  392 (454)
T ss_pred             CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            4578888888999999999999999999888888899998899999999999998664

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.25  E-value=0.0022  Score=47.84  Aligned_cols=48  Identities=19%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++..+.++.+++..|++++.+.++|+|+ |.+.|++|..|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~   49 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALI   49 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHh
Confidence            4578899999999999999998889999998 99999999999998653

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.24  E-value=0.003  Score=47.84  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=43.1

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +..++.++++.++++.|...+...++|+|+.|.+.|+||..|++..+.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~   51 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL   51 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence            467899999999999999888889999998899999999999987654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.24  E-value=0.00077  Score=50.95  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      |++.+++.++++.++++.|.+.+....+|+|+.|.++|+||..|++..+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~   51 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE   51 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhh
Confidence            456789999999999999988877778899999999999999999987754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.19  E-value=0.0011  Score=50.98  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +++.+++.+.++.++++.|.+.+...++|+|+.|.+.|+||..|++..+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~   50 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA   50 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhh
Confidence            5678999999999999999998888888999889999999999998765

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.17  E-value=0.001  Score=50.78  Aligned_cols=45  Identities=22%  Similarity=0.247  Sum_probs=41.4

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +.+++.++++.++++.|+..+.+.++|+|+.|.++|+||..|+..
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~   47 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE   47 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh
Confidence            478899999999999999888888999999999999999999976

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.17  E-value=0.00043  Score=63.67  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      +-.++|.|.+.+++..+++.++.++|++++.....|+||+-+++||||..|+++.
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence            3567899999999999999999999999999999999999999999999999873

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.13  E-value=0.0032  Score=49.39  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++.++.++.++.++++.|++.+....+|+|+.|.++|+||..|++..+..
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~   51 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK   51 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence            46789999999999999998888888899998999999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.10  E-value=0.0012  Score=51.95  Aligned_cols=52  Identities=19%  Similarity=0.139  Sum_probs=46.1

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      +++..+++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~   53 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELG   53 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhccc
Confidence            4678899999999999999999988999999999999999999999866443

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.10  E-value=0.00061  Score=66.73  Aligned_cols=53  Identities=28%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVV   86 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIl   86 (252)
                      .+.++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|+.
T Consensus        90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~  142 (479)
T PRK07807         90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA  142 (479)
T ss_pred             ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh
Confidence            34567889999999999999999999999999999999999999999999974

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.10  E-value=0.0013  Score=50.23  Aligned_cols=48  Identities=25%  Similarity=0.436  Sum_probs=42.0

Q ss_pred             CCceecCCCCcHHHHHHHHHHcC-CceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRK-VHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~-~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      |++..++.++++.++++.|+..+ .+.++|+|+ |.+.|+|+..|++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~   49 (119)
T cd04598           1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL   49 (119)
T ss_pred             CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence            45678899999999999998876 678889999 9999999999998755

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.09  E-value=0.0023  Score=63.70  Aligned_cols=58  Identities=24%  Similarity=0.399  Sum_probs=52.3

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+++++|.++...+++++++.++++.|++++....+|+|+.|.++|+||.+|+...+.
T Consensus       447 ~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~  504 (574)
T PRK01862        447 TQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL  504 (574)
T ss_pred             CcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            4678899888899999999999999999988889999999999999999999987653

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.09  E-value=0.0013  Score=50.34  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=44.7

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++.++..++++.++++.|++.+.+.++|+|+.|.++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~   51 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS   51 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcc
Confidence            45788999999999999999988899999988999999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.09  E-value=0.0011  Score=51.69  Aligned_cols=48  Identities=15%  Similarity=0.226  Sum_probs=43.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      .+.+++.++++.++++.|.+++...++|+|+.|.++|+||..|++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~   49 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL   49 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence            357899999999999999988888899999999999999999998865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.09  E-value=0.0016  Score=48.99  Aligned_cols=48  Identities=31%  Similarity=0.508  Sum_probs=42.5

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +++..++.++++.++++.|.+.+...++|+|+ |.++|++|..|++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~   48 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAI   48 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHH
Confidence            35678999999999999999888888889998 9999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.04  E-value=0.0015  Score=48.55  Aligned_cols=46  Identities=22%  Similarity=0.236  Sum_probs=40.7

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +++.++++++++.++++.|++.+.+.++|+|+ |.++|++|..|++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~Giv~~~~l~~   46 (105)
T cd04599           1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED-GKLVGIITSRDVRR   46 (105)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEehHHhhc
Confidence            35678999999999999999888788888884 99999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.03  E-value=0.0054  Score=46.14  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=41.4

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +.+.+++.+.++.++++.|.+++.+.++|+|+ |.+.|++|..|++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~   46 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV   46 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence            35678999999999999999988889999998 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.02  E-value=0.002  Score=48.45  Aligned_cols=49  Identities=12%  Similarity=0.130  Sum_probs=43.4

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIv   90 (252)
                      .+.++++++++.++++.|.+.+....+|+|+. |.++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~   51 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA   51 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence            45789999999999999998887788888887 99999999999998764

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.01  E-value=0.0017  Score=51.82  Aligned_cols=49  Identities=22%  Similarity=0.290  Sum_probs=44.0

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+.++++++++.++++.|++.+...++|+|+.|.++|+||..|++..+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~   50 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF   50 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence            3567899999999999999988888999999999999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.01  E-value=0.002  Score=48.46  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +++..++.+.++.++++.|++.+...++|+|+ |.++|+||..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~   49 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL   49 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence            56788999999999999999888778889998 9999999999998754

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.99  E-value=0.0025  Score=47.61  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=43.2

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      .++..++.+.++.++++.|.+.+...++|+|+.|.++|+||..|++...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   50 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence            3567889999999999999988888888999889999999999998754

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.97  E-value=0.002  Score=48.85  Aligned_cols=48  Identities=21%  Similarity=0.228  Sum_probs=42.8

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++.++.++.++++.|.+.+....+|+|+ |.++|+++..|++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~   49 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence            5678999999999999999988888889988 99999999999998653

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=96.96  E-value=0.0078  Score=45.22  Aligned_cols=49  Identities=24%  Similarity=0.285  Sum_probs=42.6

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ...++.+.++.++++.|.+.+...++|+|+.|.++|+||..+++..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~   52 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK   52 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence            4568899999999999988777788899988999999999999987643

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.93  E-value=0.0021  Score=49.44  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIv   90 (252)
                      ++.+++++.++.++++.|.+.+...++|+|+. |.+.|+||..|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~   51 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG   51 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence            45788999999999999998888888899887 99999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.93  E-value=0.0022  Score=49.11  Aligned_cols=47  Identities=13%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      .+..++.++++.++++.|.+.+.+.++|+|+.|.++|++|..|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            56789999999999999998888888899999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.92  E-value=0.0024  Score=47.86  Aligned_cols=48  Identities=25%  Similarity=0.259  Sum_probs=42.3

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      +++.++..++++.++++.|++.+....+|+|+ |.++|++|..|++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~   48 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVP   48 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHH
Confidence            35678999999999999999888777888888 9999999999998754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.91  E-value=0.003  Score=47.66  Aligned_cols=48  Identities=19%  Similarity=0.185  Sum_probs=42.6

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      ++..++++.++.++++.|.+.+.+..+|+|+.|.+.|++|..|++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   49 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD   49 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH
Confidence            456789999999999999988888889999889999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.90  E-value=0.0031  Score=47.51  Aligned_cols=48  Identities=21%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++..++.++++.++++.|.+.+.+.++|+|. |.++|+||..|++..++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~   49 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVV   49 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHH
Confidence            4678899999999999998888888889987 99999999999986543

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.89  E-value=0.0025  Score=47.98  Aligned_cols=47  Identities=19%  Similarity=0.162  Sum_probs=42.2

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      .++.++..++++.++++.|.+.+.+.++|+|+.|.++|+||..|++.
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~   48 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG   48 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc
Confidence            35678999999999999999888778889999999999999999974

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.85  E-value=0.0036  Score=47.09  Aligned_cols=49  Identities=22%  Similarity=0.388  Sum_probs=43.0

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      |++.+++.+.++.++++.|.+.+.+.++|+|+ |.++|+||..|++..+.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~   49 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVV   49 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHh
Confidence            45678999999999999999888888889998 99999999999987543

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.85  E-value=0.0034  Score=47.60  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             CceecCCCCcHHHHHHHHHHcC-CceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRK-VHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~-~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++..++.++++.++++.|..++ ....+|+| .|+++|+||..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~   50 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTA   50 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHh
Confidence            5678899999999999998877 55666666 599999999999997654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.83  E-value=0.0045  Score=46.47  Aligned_cols=44  Identities=20%  Similarity=0.172  Sum_probs=40.0

Q ss_pred             eecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           44 YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      .++++++++.++++.|.+.+...++|+|+ |.+.|+||..|++..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence            57899999999999999888888999998 999999999998763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.82  E-value=0.0036  Score=46.89  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++..++.++++.++++.|++.+.+.++|+|+ |.++|++|..|++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~   49 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA   49 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence            4567899999999999999888888999987 99999999999987653

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.81  E-value=0.0038  Score=46.97  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ....+..+.++.++++.|.+.+...++|+|+.|.++|+||..|++..+.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA   50 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence            3567899999999999998887778889998899999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.80  E-value=0.0038  Score=47.89  Aligned_cols=49  Identities=20%  Similarity=0.225  Sum_probs=43.2

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++..++.+.++.++++.|++.+....+|+|+ |+++|+||..|++..+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~   50 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISP   50 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHH
Confidence            4578899999999999999888888889997 999999999999887653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.79  E-value=0.003  Score=50.69  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=43.8

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++..++.++++.++++.|++.+...++|+|+ |.++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~   50 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT   50 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence            5678999999999999999988888999998 999999999999887643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.77  E-value=0.0044  Score=46.67  Aligned_cols=49  Identities=20%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      |++..+++++++.++++.|++.+.+.++|+|+ +.+.|++|..|++..+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~   49 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVV   49 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence            45678999999999999999988889999986 59999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.75  E-value=0.0038  Score=47.57  Aligned_cols=48  Identities=23%  Similarity=0.293  Sum_probs=42.4

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      ++..+++++++.+++..|.+.+....+|+|+.|.++|+||..|++...
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   49 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS   49 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence            567899999999999999888877888999889999999999987643

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.75  E-value=0.0041  Score=47.53  Aligned_cols=48  Identities=23%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++..++.+.++.++++.|.+++....+|+|+ |.++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~   49 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR   49 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence            4678899999999999999888888889987 99999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.68  E-value=0.0041  Score=47.40  Aligned_cols=46  Identities=17%  Similarity=0.136  Sum_probs=40.7

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVE   87 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIle   87 (252)
                      ++.+++.++++.++++.|++.+...++|+|+   .|.++|+||..|++.
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            4578999999999999998888788899997   789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.66  E-value=0.0038  Score=46.63  Aligned_cols=47  Identities=21%  Similarity=0.181  Sum_probs=41.5

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +++..++.+.++.++++.|.+.+...++|+|+.|.+.|++|..|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~   48 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF   48 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence            46678999999999999998888778889998899999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.65  E-value=0.0041  Score=60.89  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      .+.++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|+..
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~  141 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF  141 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence            355677789999999999999999999999999999999999999999999863

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=96.63  E-value=0.0023  Score=60.21  Aligned_cols=118  Identities=21%  Similarity=0.285  Sum_probs=85.1

Q ss_pred             cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccE
Q 041526           33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYI  110 (252)
Q Consensus        33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i  110 (252)
                      ..+.++|.  ....|+.++.++.+.++.-.+.+....+|+|++-.++|+||+.|++..-    ++  ..-+.++      
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----~~--t~ieKVM------  255 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----PS--TTIEKVM------  255 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----CC--ccHHHHh------
Confidence            45778885  4567999999999999999998888888999999999999999987641    11  1122222      


Q ss_pred             EEecCceEEEeCCcChHHhHhhcCC---C-CCCCCccCCHHHHH--------HHHhCCCCCCCcEEE
Q 041526          111 VMRAEGIYDVDANTSIDQLSEDLNI---K-MPEGHQYETVSGFV--------CEAFGYIPRTGESIK  165 (252)
Q Consensus       111 ~~~~dg~~~v~G~~~L~dl~~~lgi---~-l~~~~~~~TLaGli--------l~~lg~iP~~Gd~i~  165 (252)
                         .-+-+.+.+++++..++....+   + +|--+...||.|.+        +...++-|++|+.+.
T Consensus       256 ---tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqvget~~  319 (432)
T COG4109         256 ---TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVGETIS  319 (432)
T ss_pred             ---ccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcccccHH
Confidence               1244789999999998876644   3 45323355666654        345578899998875

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.55  E-value=0.0088  Score=50.68  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             HHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           17 AMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        17 ~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      .|.++.++.+-.. .......+|++|+++|.++.++.+++..|+.++..-.+|+++ |.++|-||-.||...+....
T Consensus        50 ~k~Il~aL~e~e~-~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~  124 (187)
T COG3620          50 VKRILEALEEAEK-TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM  124 (187)
T ss_pred             HHHHHHHHHHhhc-ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence            4455555543221 123467889999999999999999999999999888889977 99999999999998875433

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=96.43  E-value=0.0075  Score=44.89  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=40.3

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +++.+++.+.++.+++..|++.+....+|+|+ |.++|+++..|++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~   47 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG   47 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            46788999999999999998877767778887 99999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.41  E-value=0.0045  Score=61.24  Aligned_cols=64  Identities=25%  Similarity=0.371  Sum_probs=56.4

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccC
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE   96 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE   96 (252)
                      +.+.+++..|++.|++.+++.++-++|...+....+|+|..|...||||-.|+...++.+-.+.
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~  212 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK  212 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc
Confidence            4567778899999999999999999999999998888889999999999999999998655443

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.39  E-value=0.01  Score=44.69  Aligned_cols=47  Identities=19%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +..++.++++.++++.|.+.+....+|.++ |.++|+||..|++..+.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~   49 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-GELVGLLTFREVLQAMA   49 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHHHHHHH
Confidence            467899999999999998777666665654 99999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.29  E-value=0.0084  Score=45.17  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=35.6

Q ss_pred             cCCCCcHHHHHHHHHHcC-----CceEEEecCCCCEEEEEcchhHHH
Q 041526           46 VPDSMSVWNLLREFRIRK-----VHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        46 Vpe~~~l~~lL~~mr~~~-----~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ++.++++.++++.|++.+     ...++|+|+.|.++|+||..|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~   48 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL   48 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence            577889999999998766     256778988899999999998875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.26  E-value=0.0098  Score=57.76  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=48.0

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC---CCEEEEEcchhHHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GGTVGVVTLEDVVEE   88 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~~vGIVTleDIlee   88 (252)
                      +.+.+.+++.++++++++.++++.|++++....+|+|+.   |.++|+||..|++..
T Consensus        82 ~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~  138 (450)
T TIGR01302        82 AENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV  138 (450)
T ss_pred             ccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence            445667889999999999999999999999999999987   799999999999753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.17  E-value=0.0066  Score=59.73  Aligned_cols=52  Identities=15%  Similarity=0.179  Sum_probs=45.5

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC---CCEEEEEcchhHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GGTVGVVTLEDVV   86 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~~vGIVTleDIl   86 (252)
                      ..+.+.+++.++++++++.++++.|++.+...++|+|+.   |.++|+||..|+.
T Consensus        98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~  152 (495)
T PTZ00314         98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID  152 (495)
T ss_pred             cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence            344566788999999999999999999998999999873   7899999999985

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.13  E-value=0.0086  Score=58.70  Aligned_cols=51  Identities=24%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVV   86 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIl   86 (252)
                      ..++|.+++.++++++++.++++.|++.+...++|+|+ |.++|+||..|+.
T Consensus        90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~  140 (475)
T TIGR01303        90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLL  140 (475)
T ss_pred             hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhh
Confidence            44667789999999999999999999998888888885 7999999999974

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.96  E-value=0.019  Score=55.02  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||.++.  ..+++|+|+.+|+-. +.+.    ...+.++|...+++.|...++.++=+.+++.+..-.+|||+.|.++-
T Consensus       142 ~pvTe~g~~~~KLvG~vtsrdi~f-~~~~----~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva  216 (503)
T KOG2550|consen  142 IPVTEDGKRGSKLVGIITSRDIQF-LEDN----SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVA  216 (503)
T ss_pred             cccccCCcccceeEEEEehhhhhh-hhcc----cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceee
Confidence            4666532  368999999999853 4322    35678888877799999999999999999999888888999999999


Q ss_pred             EEcchhHHHH
Q 041526           79 VVTLEDVVEE   88 (252)
Q Consensus        79 IVTleDIlee   88 (252)
                      +|+..|+...
T Consensus       217 ~~~rtDl~k~  226 (503)
T KOG2550|consen  217 MLSRTDLMKN  226 (503)
T ss_pred             eeehhhhhhh
Confidence            9999999764

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=95.93  E-value=0.022  Score=55.24  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHH-----cCCceEEEecCCCCEEEEEcchhHHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRI-----RKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~-----~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ..+++++|.+...++++++++.++++.|++     .....++|+|+.|.++|+||..|++.
T Consensus       130 e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~  190 (449)
T TIGR00400       130 DDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL  190 (449)
T ss_pred             cchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence            456889998888999999999999999986     33456778899999999999999863

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.87  E-value=0.022  Score=54.32  Aligned_cols=73  Identities=11%  Similarity=0.148  Sum_probs=55.1

Q ss_pred             EEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           13 GIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        13 Giv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      |++...+...+.....   ..++.+ +.+....+++++++.+++..+.....++++ +|+ |.++|+||..+++.+|.+
T Consensus       309 ~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       309 QVRRRDAKLPVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGGAILL-VEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             ceecccchHhHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCCCeEE-eeC-CeEEEEEeHHHHHHHHhc
Confidence            7777766654333111   123555 446788999999999999999888887775 566 999999999999999865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=95.86  E-value=0.022  Score=52.35  Aligned_cols=118  Identities=12%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             ccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCc-HHHHhhhc
Q 041526           32 STKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDS-KEEIQKKT  107 (252)
Q Consensus        32 ~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~-~~~~~~~~  107 (252)
                      ..+++++|+.  .+.+++.++++.++++.|++++....+|+++. +.++|+|+..|++..+..   ..... -..+    
T Consensus        66 ~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~~l~~l----  138 (292)
T PRK15094         66 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAFSMDKV----  138 (292)
T ss_pred             CCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcCCHHHH----
Confidence            3467888843  38999999999999999999998888899875 789999999999865421   11110 1111    


Q ss_pred             ccEEEecCceEEEeCCcChHHhHhhcC---CC----CCCCC---ccCCHHHHHHHHhCCCCCCCc
Q 041526          108 GYIVMRAEGIYDVDANTSIDQLSEDLN---IK----MPEGH---QYETVSGFVCEAFGYIPRTGE  162 (252)
Q Consensus       108 ~~i~~~~dg~~~v~G~~~L~dl~~~lg---i~----l~~~~---~~~TLaGlil~~lg~iP~~Gd  162 (252)
                         .+   -.+.+...+++.++.+.|-   ..    +.+.+   ...|+..++-+.+|.+....|
T Consensus       139 ---~r---~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d  197 (292)
T PRK15094        139 ---LR---QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYD  197 (292)
T ss_pred             ---cC---CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccc
Confidence               11   1235777778777665442   21    11111   235777777777777664433

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.81  E-value=0.031  Score=55.22  Aligned_cols=45  Identities=16%  Similarity=0.115  Sum_probs=41.0

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVV   86 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIl   86 (252)
                      .+.++++++++.++++.|.+++...++|+|+   .|.++||||..|+.
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr  153 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR  153 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh
Confidence            3469999999999999999999999999986   68999999999985

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=95.66  E-value=0.097  Score=49.96  Aligned_cols=92  Identities=20%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-c-----cccchhhh---hcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-L-----ESTKVADM---AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN   71 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~-----~~~~l~~~---~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD   71 (252)
                      +||.+....+++.+++.+-++.++..... +     ...++.++   ....+.++.+++++.++++.|..++..-.+|||
T Consensus       188 vpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~  267 (381)
T KOG1764|consen  188 VPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVD  267 (381)
T ss_pred             eeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence            57887555699999999999987643211 1     11122221   113478899999999999999999999999999


Q ss_pred             CCCCEEEEEcchhHHHHHHhh
Q 041526           72 EYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        72 E~G~~vGIVTleDIleeIvGe   92 (252)
                      ++|..+|..+.-|+...+...
T Consensus       268 ~~g~~v~~~s~~Dv~~l~~~~  288 (381)
T KOG1764|consen  268 ENGKKVGNYSRFDVIHLAREG  288 (381)
T ss_pred             CCCceecceehhhhhhhhhcC
Confidence            999999999999999887643

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.60  E-value=0.037  Score=41.23  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=39.6

Q ss_pred             CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ++.++..+.++.+++..|++.+...++|+|+.|.+.|++|..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~   47 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR   47 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh
Confidence            3467788889999999999887778888988899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=95.37  E-value=0.049  Score=40.97  Aligned_cols=52  Identities=23%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      +.+.++.+..++.+++..|.+++...++|++. +.++|++|..|++..+....
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~   58 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG   58 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence            67789999999999999999999999988863 47999999999999885443

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=95.31  E-value=0.038  Score=41.84  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=40.5

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHHHH
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIleeI   89 (252)
                      ..+++++.++.++...|.+.+....+|+|+   .|.++|+||..|+....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~   53 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL   53 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence            467899999999999998887667778888   58999999999998765

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.24  E-value=0.033  Score=55.05  Aligned_cols=49  Identities=16%  Similarity=-0.044  Sum_probs=44.4

Q ss_pred             hcCCceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHH
Q 041526           39 AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVE   87 (252)
Q Consensus        39 ~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIle   87 (252)
                      |.+++.++++++++.++++.|.+++...++|+|+   .|.++|+||..|+..
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~  157 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF  157 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence            5588999999999999999999999999999987   489999999999864

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.55  E-value=0.053  Score=54.50  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=48.6

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      ++..+|...|++||++|++..++..||+-..+..+||+.-.+++||+|..|+..+
T Consensus       691 Dl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  691 DLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             ccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            4566788889999999999999999999998888888877889999999999843

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.50  E-value=0.098  Score=49.15  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=46.2

Q ss_pred             cCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           40 HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        40 ~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ..++..++.++++.+++...++...++++ +||.|.++|+++...++++|.+
T Consensus       334 ~~~~~~v~~d~~~~~~~~~~~~~~~p~aV-vde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         334 IDDVLTVDADTPLSEILARIRQAPCPVAV-VDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             cccccccCccchHHHHHHHHhcCCCceeE-EcCCCcEEEEecHHHHHHHHhc
Confidence            36778999999999999999999999885 7899999999999999999865

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=93.83  E-value=0.14  Score=49.08  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=78.4

Q ss_pred             ccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526           32 STKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG  108 (252)
Q Consensus        32 ~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~  108 (252)
                      ..+++++|+.  .+.+++.++++.++++.|++++....+|+++. +.++|+|+..|++..+-+   +..+ -.+      
T Consensus       190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~-l~~------  259 (408)
T TIGR03520       190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK---KNFD-WQS------  259 (408)
T ss_pred             CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc---CCCC-HHH------
Confidence            3467788853  57999999999999999999999999999764 589999999999865421   1111 111      


Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcC---CC----CCCCC---ccCCHHHHHHHHhCCCCCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLN---IK----MPEGH---QYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lg---i~----l~~~~---~~~TLaGlil~~lg~iP~~  160 (252)
                       +.+   --+.+.-++++.++.+.+-   ..    +.+.+   +--|+..++-+.+|.+...
T Consensus       260 -~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de  317 (408)
T TIGR03520       260 -LLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE  317 (408)
T ss_pred             -HcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence             111   2356888888888766552   11    12211   2357888877777776543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.78  E-value=0.26  Score=49.62  Aligned_cols=87  Identities=16%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             CeEE-ecCCCCEEEEEEHHHHhHHHHcCCc-----------------------ccccchhhhhcCCceecCCCCcHHHHH
Q 041526            1 VPVF-EQRIDNIVGIAYAMDLLDYVQKGEL-----------------------LESTKVADMAHKPAYFVPDSMSVWNLL   56 (252)
Q Consensus         1 lPV~-~~~~d~IvGiv~~kDll~~~~~~~~-----------------------~~~~~l~~~~~r~~~~Vpe~~~l~~lL   56 (252)
                      |||+ +++....+|+|..|+++..+..-+.                       .....++++|.-.|.+|...++...++
T Consensus       583 fpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~  662 (696)
T KOG0475|consen  583 FPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVV  662 (696)
T ss_pred             ceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHH
Confidence            5666 3456789999999998865431100                       012246677777789999999999999


Q ss_pred             HHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           57 REFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        57 ~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      +.|++-...-.+ |+++|.+.|+||-.|++..
T Consensus       663 ~~F~~lg~~~~~-v~~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  663 DLFRKLGLRQIL-VTKNGILLGIITKKDCLRH  693 (696)
T ss_pred             HHHHhhCceEEE-EccCCeeEeeeehHHHHHh
Confidence            999987776665 5588999999999999864

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=91.85  E-value=0.36  Score=47.19  Aligned_cols=55  Identities=22%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHH-----cCCceEEEecCCCCEEEEEcchhHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRI-----RKVHMAVVLNEYGGTVGVVTLEDVV   86 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~-----~~~~~AiVVDE~G~~vGIVTleDIl   86 (252)
                      ..+...+|....+.+++++++.+++..+|+     ...+...|+|+++.+.|+|++.+++
T Consensus       131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll  190 (451)
T COG2239         131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL  190 (451)
T ss_pred             hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh
Confidence            345778899999999999999999999995     3457788999999999999999998

>PF00571 CBS: CBS domain CBS domain web page

Probab=91.79  E-value=0.21  Score=33.34  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQ   25 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~   25 (252)
                      +||++++ ++++|+|+.+||+.++.
T Consensus        33 ~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen   33 LPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             EEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             EEEEecC-CEEEEEEEHHHHHhhhh
Confidence            5899764 89999999999998753

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=84.94  E-value=2.3  Score=40.92  Aligned_cols=43  Identities=12%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             CCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           47 PDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        47 pe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      ..+.+...++..|+..+...++|+|+.|.+.|+||.+++....
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  333 (400)
T PRK10070        291 TPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL  333 (400)
T ss_pred             CCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh
Confidence            3566889999999999999999999999999999999997664

>PRK11573 hypothetical protein; Provisional

Probab=80.95  E-value=5.9  Score=38.16  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=77.5

Q ss_pred             ccchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecC-CCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526           32 STKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE-YGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG  108 (252)
Q Consensus        32 ~~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE-~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~  108 (252)
                      ..+++++|.  ..+.+++.+.++.++++.+++++....+|+++ -..++|+|...|++..+...  .+.+ .....    
T Consensus       186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~--~~~~-~~~l~----  258 (413)
T PRK11573        186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK--KEFT-KENML----  258 (413)
T ss_pred             CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc--CcCC-HHHHH----
Confidence            456777873  45789999999999999999999888888754 36899999999999754211  1111 11110    


Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcC---CC----CCCCC---ccCCHHHHHHHHhCCCCCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLN---IK----MPEGH---QYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lg---i~----l~~~~---~~~TLaGlil~~lg~iP~~  160 (252)
                         +...--+.|.-++++.++-+.+-   ..    +.+.+   .-.|+...+-+.+|.++..
T Consensus       259 ---~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de  317 (413)
T PRK11573        259 ---RAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS  317 (413)
T ss_pred             ---hhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence               00112356888888888755442   11    22211   2358888888888888744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
3lfr_A	136	The Crystal Structure Of A Cbs Domain From A Putati		1e-15
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		7e-15
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		1e-14
3oi8_A	156	The Crystal Structure Of Functionally Unknown Conse		5e-13
3nqr_A	127	A Putative Cbs Domain-Containing Protein From Salmo		3e-11
3lhh_A	172	The Crystal Structure Of Cbs Domain Protein From Sh		9e-10
3lv9_A	148	Crystal Structure Of Cbs Domain Of A Putative Trans		1e-09
3oco_A	153	The Crystal Structure Of A Hemolysin-Like Protein C		1e-07
3i8n_A	130	A Domain Of A Conserved Functionally Known Protein		4e-07
3hf7_A	130	The Crystal Structure Of A Cbs-Domain Pair With Bou		6e-05
3ocm_A	173	The Crystal Structure Of A Domain From A Possible M		5e-04

>pdb|3LFR|A Chain A, The Crystal Structure Of A Cbs Domain From A Putative Metal Ion Transporter Bound To Amp From Pseudomonas Syringae To 1.55a Length = 136

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  D+++G+  A DLL  + K +  +S  V  +  +PA FVP+S  +  LLREFR 
Sbjct: 40  PVIGESHDDVLGVLLAKDLLPLILKADG-DSDDVKKLL-RPATFVPESKRLNVLLREFRA 97
Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESD 98
              H A+V++EYGG  G+VT+EDV+E+IVG+I DE D
Sbjct: 98  NHNHXAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEHD 134

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 5/92 (5%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV+E   DNI+GI  A DLL Y  +  L   + V     +PA F+P+   +  LLREFR 
Sbjct: 42  PVYEDDRDNIIGILLAKDLLRYXLEPALDIRSLV-----RPAVFIPEVKRLNVLLREFRA 96
Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
            + H+A+V++E+GG  G+VT EDV+E+IVG+I
Sbjct: 97  SRNHLAIVIDEHGGISGLVTXEDVLEQIVGDI 128

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           PV  +  D+I GI  A DLL + +   E     KV     + A  VP+S  V   L+EFR
Sbjct: 104 PVISEDKDHIEGILXAKDLLPFXRSDAEAFSXDKVL----RQAVVVPESKRVDRXLKEFR 159
Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
            ++ H A+V++E+GG  G+VT+ED++E IVGEI       E  ++        +   + V
Sbjct: 160 SQRYHXAIVIDEFGGVSGLVTIEDILELIVGEI-----EDEYDEEDDIDFRQLSRHTWTV 214
Query: 121 DANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESI 164
            A  SI+  +E       +  + +T+ G V +AFG++P  GE+I
Sbjct: 215 RALASIEDFNEAFGTHFSD-EEVDTIGGLVXQAFGHLPARGETI 257

>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved Protein Domain From Neisseria Meningitidis Mc58 Length = 156

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  D ++GI +A DLL Y    E      +     +PA FVP+  S+  LL+EFR 
Sbjct: 75  PVIGEDKDEVLGILHAKDLLKYXFNPEQFHLKSIL----RPAVFVPEGKSLTALLKEFRE 130
Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVE 87
           ++ H A+V++EYGGT G+VT ED++E
Sbjct: 131 QRNHXAIVIDEYGGTSGLVTFEDIIE 156

>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella Typhimurium Lt2 Length = 127

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           PV  +  D+I GI  A DLL + +   E     KV     + A  VP+S  V   L+EFR
Sbjct: 40  PVISEDKDHIEGILXAKDLLPFXRSDAEAFSXDKVL----RTAVVVPESKRVDRXLKEFR 95
Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
            ++ H A+V++E+GG  G+VT+ED++E IVGE
Sbjct: 96  SQRYHXAIVIDEFGGVSGLVTIEDILELIVGE 127

>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From Shewanella Oneidensis Mr-1 Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV    +D+ VGI  A  LL     GE LE   + D+  K   FVP+S+S   LL  FR 
Sbjct: 79  PVCRNNVDDXVGIISAKQLLSESIAGERLE---LVDLV-KNCNFVPNSLSGXELLEHFRT 134
Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDS 99
                  V++EYG   G+VTL+D  + + GE F E  S
Sbjct: 135 TGSQXVFVVDEYGDLKGLVTLQDXXDALTGEFFQEDGS 172

>pdb|3LV9|A Chain A, Crystal Structure Of Cbs Domain Of A Putative Transporter From Clostridium Difficile 630 Length = 148

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV  +  D+I+G  +  DL  Y QK  + E+    +   +   ++ +++++   L   R 
Sbjct: 60  PVCRKNKDDILGFVHIRDL--YNQK--INENKIELEEILRDIIYISENLTIDKALERIRK 115
Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
            K+ +A+V++EYGGT GVVT+ED++EEIVGEI
Sbjct: 116 EKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI 147

>pdb|3OCO|A Chain A, The Crystal Structure Of A Hemolysin-Like Protein Containing Cbs Domain Of Oenococcus Oeni Psu Length = 153

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 9   DNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAV 68
           D I+G AY  D+   V++  + +  K++ +  +    VP++  V ++  E    +V  A+
Sbjct: 65  DKIIGYAYNYDI---VRQARIDDKAKISTIX-RDIVSVPENXKVPDVXEEXSAHRVPXAI 120
Query: 69  VLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKE 101
           V++EYGGT G++T +DV EE+ G + DE D ++
Sbjct: 121 VIDEYGGTSGIITDKDVYEELFGNLRDEQDDED 153

>pdb|3I8N|A Chain A, A Domain Of A Conserved Functionally Known Protein From Vibrio Parahaemolyticus Rimd 2210633. Length = 130

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 3   VFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIR 62
           V+ ++ DNI+G  + ++L    Q G      K      +P   V ++ ++  +  +    
Sbjct: 44  VYSEQKDNIIGFVHRLELFKXQQSGS---GQKQLGAVXRPIQVVLNNTALPKVFDQXXTH 100
Query: 63  KVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
           ++ +A+V++EYG  +G+VTLED+ E +VGE
Sbjct: 101 RLQLALVVDEYGTVLGLVTLEDIFEHLVGE 130

>pdb|3HF7|A Chain A, The Crystal Structure Of A Cbs-Domain Pair With Bound Amp From Klebsiella Pneumoniae To 2.75a Length = 130

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 44  YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
           YFVP+   +   L +F+  K  + +V++EYG   G+VT+ED++EEIVG+
Sbjct: 80  YFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 128

>pdb|3OCM|A Chain A, The Crystal Structure Of A Domain From A Possible Membrane Protein Of Bordetella Parapertussis Length = 173

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV    +D +VGI  A DL+      +L+   +V     +    V +S+ +  L    + 
Sbjct: 73  PVCRGSLDEVVGIGRAKDLV-----ADLITEGRVRRNRLRDPIIVHESIGILRLXDTLKR 127
Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE 96
            +  + +V +E+G   G+VT  DV E I GE  DE
Sbjct: 128 SRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDE 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	7e-40
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	4e-39
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	1e-36
3oco_A	153	Hemolysin-like protein containing CBS domains; str	2e-36
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	3e-36
3ocm_A	173	Putative membrane protein; structural genomics, PS	4e-36
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	8e-36
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	9e-36
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	4e-35
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	4e-29
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	1e-15
3ded_A	113	Probable hemolysin; structural genomics, P protein	1e-13
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	4e-12
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	2e-11
2p13_A	90	CBS domain; alpha-beta structure, structural genom	3e-11
2pli_A	91	Uncharacterized protein; CORC-associated region, M	2e-10
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	4e-10
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	4e-10
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	5e-10
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	1e-09
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	3e-09
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	4e-09
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	7e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	4e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	8e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	7e-04

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score =  133 bits (338), Expect = 7e-40
 Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 2/98 (2%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV  +  D+++G+  A DLL  + K +  +S  V  +   PA FVP+S  +  LLREFR
Sbjct: 39  YPVIGESHDDVLGVLLAKDLLPLILKADG-DSDDVKKLLR-PATFVPESKRLNVLLREFR 96

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESD 98
               HMA+V++EYGG  G+VT+EDV+E+IVG+I DE D
Sbjct: 97  ANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEHD 134

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  132 bits (336), Expect = 4e-39
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV    +D++VGI  A  LL     GE LE   +     K   FVP+S+S   LL  FR
Sbjct: 78  FPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV----KNCNFVPNSLSGMELLEHFR 133

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDS 99
                M  V++EYG   G+VTL+D+++ + GE F E  S
Sbjct: 134 TTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQEDGS 172

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score =  124 bits (315), Expect = 1e-36
 Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 5/93 (5%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV+E   DNI+GI  A DLL Y+ +  L     +  +   PA F+P+   +  LLREFR
Sbjct: 41  FPVYEDDRDNIIGILLAKDLLRYMLEPAL----DIRSLVR-PAVFIPEVKRLNVLLREFR 95

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
             + H+A+V++E+GG  G+VT+EDV+E+IVG+I
Sbjct: 96  ASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI 128

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score =  125 bits (316), Expect = 2e-36
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 1   VPVF-EQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREF 59
            PV  +   D I+G AY  D++   +  +     K++ +       VP++M V +++ E 
Sbjct: 56  FPVTADNDKDKIIGYAYNYDIVRQARIDD---KAKISTIMR-DIVSVPENMKVPDVMEEM 111

Query: 60  RIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKE 101
              +V MA+V++EYGGT G++T +DV EE+ G + DE D ++
Sbjct: 112 SAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQDDED 153

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score =  124 bits (313), Expect = 3e-36
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV  +  D+I GI  A DLL +++     E+  +  +    A  VP+S  V  +L+EFR
Sbjct: 39  FPVISEDKDHIEGILMAKDLLPFMRSDA--EAFSMDKVLR-TAVVVPESKRVDRMLKEFR 95

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
            ++ HMA+V++E+GG  G+VT+ED++E IVGE
Sbjct: 96  SQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 127

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  125 bits (316), Expect = 4e-36
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           PV    +D +VGI  A DL+  +     +   ++     +    V +S+ +  L+   + 
Sbjct: 73  PVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRL-----RDPIIVHESIGILRLMDTLKR 127

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQ 104
            +  + +V +E+G   G+VT  DV E I GE  DE +  + + 
Sbjct: 128 SRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDELPDIVA 170

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score =  122 bits (310), Expect = 8e-36
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
             V+ ++ DNI+G  + ++L    Q G      ++  +  +P   V ++ ++  +  +  
Sbjct: 42  PLVYSEQKDNIIGFVHRLELFKMQQSGS--GQKQLGAVM-RPIQVVLNNTALPKVFDQMM 98

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
             ++ +A+V++EYG  +G+VTLED+ E +VGE
Sbjct: 99  THRLQLALVVDEYGTVLGLVTLEDIFEHLVGE 130

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score =  122 bits (310), Expect = 9e-36
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           + ++   +D+ + +    +    + + +      +   A +  YFVP+   +   L +F+
Sbjct: 38  IVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAADEI-YFVPEGTPLSTQLVKFQ 96

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
             K  + +V++EYG   G+VT+ED++EEIVG+ 
Sbjct: 97  RNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 129

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  121 bits (307), Expect = 4e-35
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV  +  D+I+G  +  DL +           ++ ++      ++ +++++   L   R
Sbjct: 59  YPVCRKNKDDILGFVHIRDLYNQKINEN---KIELEEILR-DIIYISENLTIDKALERIR 114

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
             K+ +A+V++EYGGT GVVT+ED++EEIVGEI
Sbjct: 115 KEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI 147

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  106 bits (268), Expect = 4e-29
 Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 4/87 (4%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV  +  D ++GI +A DLL Y+   E      +  +   PA FVP+  S+  LL+EFR
Sbjct: 74  FPVIGEDKDEVLGILHAKDLLKYMFNPE---QFHLKSILR-PAVFVPEGKSLTALLKEFR 129

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVE 87
            ++ HMA+V++EYGGT G+VT ED++E
Sbjct: 130 EQRNHMAIVIDEYGGTSGLVTFEDIIE 156

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4 Length = 101

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 18/107 (16%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVE 169
           I   +   + +D +T +D++   +  ++PEG  YET+SG + +    + +TG+ I++ ++
Sbjct: 6   ITETSPDKWLIDGDTPLDEVERAIGYELPEG-DYETISGLLFDHANALLKTGDVIEIPLD 64

Query: 170 KENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216
            E ++  +  +             +I ++ +L         +    +
Sbjct: 65  FEPEDYLNNTSPT----------QRILRITVLEVERNVPVKLALALL 101

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4 Length = 113

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 87  EEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMP----EGHQ 142
           E +  +  D  + +         IV R +G + VD   S+D+  E   ++ P     G  
Sbjct: 15  ENLYFQGHDGEEDE---------IVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGN 65

Query: 143 YETVSGFVCEAFGYIPRTGESI 164
             T++G +    G +P   +  
Sbjct: 66  IHTLAGVMLYQLGRVPSVTDRF 87

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A* Length = 94

 Score = 59.8 bits (146), Expect = 4e-12
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 34/125 (27%)

Query: 95  DESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEG--HQYETVSGFVCE 152
           +  ++ E+       +V R +G + +D    I++L E L  ++P+G  + Y T++G    
Sbjct: 2   NAENTDEDAL-----MVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCIS 56

Query: 153 AFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVR 212
            FG IP  GE                    G            +++EI+  +  ++  + 
Sbjct: 57  YFGRIPHVGEYFDW---------------AG------------WRIEIVDLDGARIDXLL 89

Query: 213 FERIN 217
            +R+N
Sbjct: 90  LQRLN 94

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} Length = 83

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 28/110 (25%)

Query: 109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVV 168
           YI     G + V A T +D  ++    +  +   ++TV G V  AFG++P+  E +++  
Sbjct: 2   YIKPLPSGDFIVKALTPVDAFNDFFGSEFSDEE-FDTVGGLVMSAFGHLPKRNEVVEL-- 58

Query: 169 EKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINN 218
                                      ++  +L  ++R+V  +R   + N
Sbjct: 59  -------------GE------------FRFRVLNADSRRVHLLRLSPLQN 83

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4 Length = 90

 Score = 57.1 bits (139), Expect = 3e-11
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 97  SDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKM-PEGHQYETVSGFVCEAFG 155
           S+++E++         +A+G + +D   SI + S  L   +  E  +Y T+ G++   FG
Sbjct: 1   SNAEEKVV-----AEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFG 55

Query: 156 YIPRTGESI 164
           YIP  GE I
Sbjct: 56  YIPAAGEQI 64

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4 Length = 91

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 95  DESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAF 154
           DE DS + I          +   + + A T I+ ++     +       +T+ G V +  
Sbjct: 4   DEDDSADNIHA-------VSSERWRIHAATEIEDINTFFGTEYSSEE-ADTIGGLVIQEL 55

Query: 155 GYIPRTGESIKV 166
           G++P  GE + +
Sbjct: 56  GHLPVRGEKVLI 67

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4 Length = 86

 Score = 54.4 bits (132), Expect = 4e-10
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKM---PEGHQYETVSGFVCEAFGYIPRTGESIKV 166
            V R +G + +D   ++ +L + L ++     E   Y T+SG +    G +P+TG+    
Sbjct: 3   AVQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFW 62

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4 Length = 92

 Score = 54.0 bits (131), Expect = 4e-10
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 95  DESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEG-HQYETVSGFVCEA 153
           +    +E        +    +    V+      +L+  LN+   E    + TV+G + E 
Sbjct: 2   NAEREEEP------AVQGNPDESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEE 55

Query: 154 FGYIPRTGESI 164
              IP  G+  
Sbjct: 56  LQTIPDVGDFA 66

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4 Length = 86

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIK-MPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
            + R E  + +D  T ++ +   LNI   P    YET+ GF+      IP   + +  
Sbjct: 3   AMRRNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXXTDFVLY 60

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A* Length = 81

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166
            + +++G   +D + ++  L++  N ++       T +G + E    IP  G   ++
Sbjct: 3   AIQQSDGSMIIDGSANLRDLNKMFNWELDTED-ARTFNGLILEHLEEIPDEGTICEI 58

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4 Length = 87

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVE 169
               A+  Y V    +++  +E     +   +  +T++GF     G IP   E     VE
Sbjct: 2   SREIADNTYIVLGTMTLNDFNEYFETDLESDN-VDTIAGFYLTGVGTIPSQEEKEHFEVE 60

Query: 170 KEN 172
              
Sbjct: 61  SNG 63

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4 Length = 93

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVV 168
                A+  Y V     ID+ +E     +      +T++G++  A G IP  GE     V
Sbjct: 9   LYTQVADNEYLVQGRMLIDEFNEVFETDLHMSD-VDTMAGYLITALGTIPDEGEKPSFEV 67

Query: 169 E 169
            
Sbjct: 68  G 68

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4 Length = 93

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 97  SDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMP----EGHQYETVSGFVCE 152
           S+++EE+        +  +G Y  +  TS+  +   L++        G + +T+SG   E
Sbjct: 1   SNAEEELP-----FKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLE 55

Query: 153 AFGYIPRTGESIK 165
               +P  G++  
Sbjct: 56  IKQELPHVGDTAV 68

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 14/130 (10%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            P+     + ++ +    D++  +   ++ E+  + D   +          + ++ R   
Sbjct: 118 APIVNDE-NQLISLITERDVIRALLD-KIDENEVIDDYITRDVIVATPGERLKDVARTMV 175

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIV---MRAEGI 117
                   V++E G  VG++T  D ++ +  +          +++ T   +   M+   +
Sbjct: 176 RNGFRRLPVVSE-GRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMK-RDV 233

Query: 118 YDVDANTSID 127
                   + 
Sbjct: 234 ITAKEGDKLK 243

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/100 (12%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-----------LESTKVADMAHKPAYFVPDS 49
           +PV  +    +VGI  + D +  +                + + ++ ++  +      + 
Sbjct: 182 LPVVSE--GRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEG 239

Query: 50  MSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89
             +  +        +    V++E     G++T +DV++  
Sbjct: 240 DKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGE--------------LLESTKVADMAHKPAYFV 46
           +PV     + +VGI  +MD++D++  G                  +  V ++  +    +
Sbjct: 38  LPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITL 97

Query: 47  PDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKK 106
            ++  +   +  F  + V  A ++N+    + ++T  DV+  ++ +I +     + I + 
Sbjct: 98  KENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRD 157

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
             V ++     VGI    D+L+ + +G+ L   KV ++  +    +    ++     +  
Sbjct: 35  SVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMV 92

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
              V   +V  +    +GV++  D++   + +
Sbjct: 93  KNVVWRLLVEED-DEIIGVISATDILRAKMAK 123

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 9   DNIVGIAYAMDLLDYVQKG------ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIR 62
           + +VGI   ++ +  + K       +      V D+       + +  SV     E  ++
Sbjct: 197 NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVK 256

Query: 63  KVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE 96
           ++   ++LN+     G++T  D++  +   +  E
Sbjct: 257 RIGSLLILNKDNTIRGIITERDLLIALHHILVME 290

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +PV +   D  VGI    + L   +  +L E   V          +   + +   ++   
Sbjct: 127 LPVVDIN-DKPVGIVTEREFLLLYK--DLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLML 183

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120
            R      V+++    VG+VT+ + ++++  +  D+ D      K    +++    +  +
Sbjct: 184 RRGFRRLPVIDDDNKVVGIVTVVNAIKQL-AKAVDKLDPDYFYGKVVKDVMVT--NLVTI 240

Query: 121 DANTSIDQ 128
           D   S+++
Sbjct: 241 DELASVNR 248

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
            PV +   +  +G+ +   LL+  +KG      K+ +   +          +++ L    
Sbjct: 39  APVLDG--ERYLGMVHLSRLLE-GRKGWPTVKEKLGEELLETVRSYRPGEQLFDNLISVA 95

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
             K  +  + +E G   GVV+ + ++  +   I
Sbjct: 96  AAKCSVVPLADEDGRYEGVVSRKRILGFLAERI 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3ded_A	113	Probable hemolysin; structural genomics, P protein	99.86
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	99.84
2pli_A	91	Uncharacterized protein; CORC-associated region, M	99.84
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	99.84
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	99.84
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	99.83
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	99.83
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	99.83
2p13_A	90	CBS domain; alpha-beta structure, structural genom	99.82
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	99.82
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	99.81
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	99.79
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	99.74
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.69
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.67
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.67
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.66
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.64
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.63
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.62
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.61
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.6
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.52
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.47
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.39
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.36
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.36
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.35
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.35
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.35
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.34
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.34
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.33
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.33
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.32
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.32
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.32
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.31
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.31
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.31
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.3
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.29
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.28
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.28
4esy_A	170	CBS domain containing membrane protein; structural	99.28
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.27
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.26
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.26
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.25
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.23
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.23
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.22
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.22
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.21
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.21
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.2
3ddj_A	296	CBS domain-containing protein; structural genomics	99.2
3ddj_A	296	CBS domain-containing protein; structural genomics	99.19
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.19
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.13
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.11
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.04
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.99
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.96
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.95
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.92
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.91
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.9
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.85
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.85
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.72
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.7
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.47
4esy_A	170	CBS domain containing membrane protein; structural	98.41
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.36
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.34
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.31
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.31
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.29
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.28
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.27
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.25
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.2
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.19
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.17
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.15
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.15
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.15
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.14
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.13
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.11
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.09
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.06
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.05
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.02
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.02
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.0
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.0
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.99
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.99
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.96
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.96
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.95
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.89
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.89
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.88
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.86
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.84
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.83
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.82
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.8
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.8
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.77
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.76
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.74
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.68
1vr9_A	213	CBS domain protein/ACT domain protein; structural	97.54
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.48
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.33
3fio_A	70	A cystathionine beta-synthase domain protein fused	96.83
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.81
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	96.68
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	96.58
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	96.51
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	96.23
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.02
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.92
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.76
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.13
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	94.51
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	93.41
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	92.71

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=99.86  E-value=1.8e-21  Score=153.67  Aligned_cols=92  Identities=23%  Similarity=0.440  Sum_probs=75.4

Q ss_pred             hhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCC--CCC--CCccCCHHHHHHHHhCCCCCCCcEEEE
Q 041526           91 GEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIK--MPE--GHQYETVSGFVCEAFGYIPRTGESIKV  166 (252)
Q Consensus        91 Gei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~--l~~--~~~~~TLaGlil~~lg~iP~~Gd~i~~  166 (252)
                      .+|.||+|...      +.+.++.+|+|+|+|.++|++|++.||++  ||+  .++|+||||||+++||++|++|++|.+
T Consensus        16 ~~I~DE~D~ee------~~i~~~~dg~~~v~G~~~l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg~iP~~Gd~v~~   89 (113)
T 3ded_A           16 NLYFQGHDGEE------DEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEW   89 (113)
T ss_dssp             -----------------CCEEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCTTCEEEE
T ss_pred             CcCcCCCCCCC------CceEEecCCEEEEecccCHHHHHHHhCCCccCCcccCCCCccHHHHHHHHhCCCCCCCCEEEE
Confidence            47899998542      45788999999999999999999999999  986  347999999999999999999999999


Q ss_pred             eeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEE
Q 041526          167 VVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFER  215 (252)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~  215 (252)
                                                 ++|+|+|++|+++||.+|+|++
T Consensus        90 ---------------------------~g~~f~V~~~d~~RI~~V~v~~  111 (113)
T 3ded_A           90 ---------------------------NGFSFEVVDMDRTRVDKILVQR  111 (113)
T ss_dssp             ---------------------------TTEEEEEEEEETTEEEEEEEEE
T ss_pred             ---------------------------CCEEEEEEEEeCCeEEEEEEEE
Confidence                                       5899999999999999999985

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=99.84  E-value=9.4e-21  Score=141.46  Aligned_cols=81  Identities=25%  Similarity=0.546  Sum_probs=74.9

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .+.+.++|+|+++|+++|+||++.||+++|+ ++|+|||||++++||++|++|+++.+                      
T Consensus         2 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~-~~~~Tl~G~i~~~lg~iP~~Gd~v~~----------------------   58 (83)
T 3llb_A            2 YIKPLPSGDFIVKALTPVDAFNDFFGSEFSD-EEFDTVGGLVMSAFGHLPKRNEVVEL----------------------   58 (83)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHCCCCCT-TTCSBHHHHHHHHHSSCCCTTCEEEE----------------------
T ss_pred             ceEEeCCCEEEEEccCCHHHHHHHhCCCCCC-CCCcCHHHHHHHHhCcCCCCCCEEEE----------------------
Confidence            3677899999999999999999999999986 47999999999999999999999999                      


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                           ++|+|+|++|+++||.+|++++..
T Consensus        59 -----~~~~f~V~~~~~~rI~~v~v~~~~   82 (83)
T 3llb_A           59 -----GEFRFRVLNADSRRVHLLRLSPLQ   82 (83)
T ss_dssp             -----TTEEEEEEEECSSCEEEEEEEEC-
T ss_pred             -----CCEEEEEEEeeCCEEEEEEEEECC
Confidence                 589999999999999999998654

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=99.84  E-value=8.3e-21  Score=144.09  Aligned_cols=80  Identities=16%  Similarity=0.351  Sum_probs=74.6

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .+.+.++|+|+++|+++|++|++.||++||++ +|+|||||++++||++|++|+++.+                      
T Consensus        11 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~-~~dTlgG~i~~~lg~iP~~Ge~v~~----------------------   67 (91)
T 2pli_A           11 NIHAVSSERWRIHAATEIEDINTFFGTEYSSE-EADTIGGLVIQELGHLPVRGEKVLI----------------------   67 (91)
T ss_dssp             SEEEEETTEEEEETTCBHHHHHHHHCCCCCCS-SCCBHHHHHHHHHSSCCCTTCEEEE----------------------
T ss_pred             ceEEeCCCEEEEEcCCCHHHHHHHhCCCCCCC-CCccHHHHHHHHhCCCCCCCCEEEE----------------------
Confidence            47788999999999999999999999999874 6999999999999999999999998                      


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                           ++|+|+|++|+++||.+|+|++.
T Consensus        68 -----~~~~f~V~~~d~~rI~~v~v~~~   90 (91)
T 2pli_A           68 -----GGLQFTVARADNRRLHTLMATRV   90 (91)
T ss_dssp             -----TTEEEEEEEECSSCEEEEEEEEC
T ss_pred             -----CCEEEEEEEEeCCEEEEEEEEEC
Confidence                 58999999999999999999753

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=99.84  E-value=1.1e-20  Score=143.76  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=74.3

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .+.+.++|+|+++|+++|++|++.||++||++ +|+|||||++++||++|++|+++.+..                    
T Consensus         9 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~-~~~TlgG~i~~~lg~iP~~Gd~v~~~~--------------------   67 (93)
T 2r2z_A            9 LYTQVADNEYLVQGRMLIDEFNEVFETDLHMS-DVDTMAGYLITALGTIPDEGEKPSFEV--------------------   67 (93)
T ss_dssp             CEEEEETTEEEEETTSBHHHHHHHHTCCCCCT-TCCBHHHHHHHHHSSCCCTTCCCEEEE--------------------
T ss_pred             CeEEeCCCEEEEECCCCHHHHHHHhCCCCCCC-CcccHHHHHHHHhCCCCCCCCEEEEec--------------------
Confidence            47778999999999999999999999999874 699999999999999999999997610                    


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                           ++|+|+|++|+++||.+|+|++.
T Consensus        68 -----~~~~f~V~~~~~~rI~~v~v~~~   90 (93)
T 2r2z_A           68 -----GNIKLTAEEMEGTRLLVLRVHFY   90 (93)
T ss_dssp             -----TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             -----CCEEEEEEEeeCCEEEEEEEEec
Confidence                 38999999999999999999854

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=99.84  E-value=1.8e-20  Score=139.27  Aligned_cols=80  Identities=15%  Similarity=0.306  Sum_probs=74.6

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .+.+.++|+|+++|+++|+||++.||+++|++ +|+|||||++++||++|++||++.+                      
T Consensus         2 ~i~~~~dg~~~v~g~~~l~dl~~~l~~~l~~~-~~~Tl~G~i~~~lg~iP~~Gd~v~~----------------------   58 (81)
T 3lae_A            2 NAIQQSDGSMIIDGSANLRDLNKMFNWELDTE-DARTFNGLILEHLEEIPDEGTICEI----------------------   58 (81)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHCCCCCCS-SCSBHHHHHHHHCSSCCCTTCEEEE----------------------
T ss_pred             CcEEeCCCEEEEEeeCCHHHHHHHhCCCCCCC-CCccHHHHHHHHhCCCCCCCCEEEE----------------------
Confidence            36778999999999999999999999999874 7999999999999999999999999                      


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                           ++|+|+|++|+++||.+|+++++
T Consensus        59 -----~~~~f~V~~~~~~rI~~v~v~~~   81 (81)
T 3lae_A           59 -----DGLLITILEVGDNMIKQAKVVKL   81 (81)
T ss_dssp             -----TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             -----CCEEEEEEEeeCCEEEEEEEEEC
Confidence                 58999999999999999999753

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=99.83  E-value=4.8e-20  Score=138.32  Aligned_cols=81  Identities=25%  Similarity=0.501  Sum_probs=74.2

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCC-CCCC--CccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIK-MPEG--HQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSD  185 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~-l~~~--~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~  185 (252)
                      .+.+.++|+|+++|+++|++|++.||++ ||++  ++|+|||||++++||++|++|+++.+                   
T Consensus         2 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~-------------------   62 (86)
T 2pls_A            2 NAVQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFW-------------------   62 (86)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCTTCEEEE-------------------
T ss_pred             ceEEeCCCeEEEEcccCHHHHHHHhCCCcCCCccCCCcccHHHHHHHHhCCCCCCCCEEEE-------------------
Confidence            3567789999999999999999999999 9862  46999999999999999999999998                   


Q ss_pred             ccccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          186 RQDSKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       186 ~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                              ++|+|+|++|+++||.+|++++.
T Consensus        63 --------~~~~f~V~~~~~~rI~~v~v~~~   85 (86)
T 2pls_A           63 --------ENWRLEVIDMDSKRIDKVLATKI   85 (86)
T ss_dssp             --------TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             --------CCEEEEEEEeeCCEEEEEEEEEC
Confidence                    58999999999999999999754

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=99.83  E-value=3.3e-20  Score=139.30  Aligned_cols=81  Identities=22%  Similarity=0.405  Sum_probs=73.4

Q ss_pred             EEEecCceEEEeCCcChHHhHhhcCCC-CCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDLNIK-MPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~lgi~-l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      +.+.++|+|+++|+++|++|++.||++ +|++++|+|||||++++||++|+.|+++.+                      
T Consensus         3 i~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~----------------------   60 (86)
T 2p4p_A            3 AMRRNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXXTDFVLY----------------------   60 (86)
T ss_dssp             CCCCCCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCTTCEEEE----------------------
T ss_pred             eEEeCCCEEEEEccCCHHHHHHHhCCCCCCcCCCCccHHHHHHHHhCCCCCCCcEEEE----------------------
Confidence            344679999999999999999999996 986447999999999999999999999998                      


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                           ++|+|+|++|+++||.+|++++..
T Consensus        61 -----~~~~f~V~~~~~~rI~~v~v~~~~   84 (86)
T 2p4p_A           61 -----DXYXFEIIDTENFRIDQLMVSFRX   84 (86)
T ss_dssp             -----TTEEEEEEEEETTEEEEEEEEECC
T ss_pred             -----eeEEEEEEEccCCEEEEEEEEECC
Confidence                 589999999999999999998653

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=99.83  E-value=3.7e-20  Score=141.36  Aligned_cols=81  Identities=27%  Similarity=0.593  Sum_probs=71.2

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCC--CccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEG--HQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDR  186 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~--~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~  186 (252)
                      .+.+.++|+|+++|+++|++|++.||++||++  ++|+||||||+++||++|++|++|.+                    
T Consensus        11 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~dTlgG~i~~~lg~iP~~Gd~v~~--------------------   70 (94)
T 2oai_A           11 LMVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHVGEYFDW--------------------   70 (94)
T ss_dssp             SEEECTTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCCTTCEEEE--------------------
T ss_pred             CeEEeCCCeEEEeccCCHHHHHHHhCCCCCcccCCCCccHHHHHHHHhCCCCCCCCEEEE--------------------
Confidence            47778999999999999999999999999862  36999999999999999999999998                    


Q ss_pred             cccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          187 QDSKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       187 ~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                             ++|+|+|++|+++||.+|+|++.
T Consensus        71 -------~~~~f~V~~~d~~rI~~V~v~~~   93 (94)
T 2oai_A           71 -------AGWRIEIVDLDGARIDXLLLQRL   93 (94)
T ss_dssp             -------TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             -------CCEEEEEEEEcCCEEEEEEEEEC
Confidence                   58999999999999999999854

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=99.82  E-value=3.8e-20  Score=140.08  Aligned_cols=81  Identities=31%  Similarity=0.491  Sum_probs=74.6

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCC-CccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEG-HQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQ  187 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~-~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~  187 (252)
                      .+.+.++|+|+++|+++|++|++.||++||++ ++|+|||||++++||++|++|+++.+                     
T Consensus         8 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~TlgG~i~~~lg~iP~~Gd~v~~---------------------   66 (90)
T 2p13_A            8 VAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITV---------------------   66 (90)
T ss_dssp             SEEECTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCCCTTCEEEE---------------------
T ss_pred             ceEEeCCCEEEEECcCCHHHHHHHHCCCCCCcCCCCccHHHHHHHHhCCCCCCCCEEEE---------------------
Confidence            46778999999999999999999999999863 46999999999999999999999998                     


Q ss_pred             ccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          188 DSKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       188 ~~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                            ++|+|+|++|+++||.+|++++.
T Consensus        67 ------~~~~f~V~~~d~~rI~~v~v~~~   89 (90)
T 2p13_A           67 ------DGLIFEIVSVNKHNIGKVRVHRT   89 (90)
T ss_dssp             ------TTEEEEECCBCSSSBCEEEEEEC
T ss_pred             ------CCEEEEEEEEeCCEEEEEEEEEC
Confidence                  58999999999999999999753

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=99.82  E-value=4.2e-20  Score=140.35  Aligned_cols=80  Identities=18%  Similarity=0.406  Sum_probs=69.2

Q ss_pred             EEEecCceEEEeCCcChHHhHhhcCCC-CCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDLNIK-MPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~lgi~-l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      +.+.++|+|+++|+++|++|++.||++ ||++++|+|||||++++||++|++|+++.+                      
T Consensus        11 i~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~----------------------   68 (92)
T 2o3g_A           11 VQGNPDESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADF----------------------   68 (92)
T ss_dssp             ------CCSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTCEEEE----------------------
T ss_pred             eEEcCCCEEEEEccCCHHHHHHHhCCCCCCcCCCcccHHHHHHHHhCCCCCCCCEEEE----------------------
Confidence            566789999999999999999999999 983347999999999999999999999998                      


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                           ++|+|+|++|+++||.+|+|++.
T Consensus        69 -----~~~~f~V~~~~~~rI~~V~v~~~   91 (92)
T 2o3g_A           69 -----HGWRFEVVEKEGQRIERVKITKL   91 (92)
T ss_dssp             -----TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             -----CCEEEEEEEeeCCEEEEEEEEEC
Confidence                 58999999999999999999754

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=99.81  E-value=1.8e-19  Score=135.52  Aligned_cols=78  Identities=18%  Similarity=0.263  Sum_probs=72.4

Q ss_pred             EEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCc--EEEEeeecccccccccccCCCCCcc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGE--SIKVVVEKENQEENDEDTENGSDRQ  187 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd--~i~~~~~~~~~~~~~~~~~~~~~~~  187 (252)
                      +.+.++|+|+++|+++|+||++.||++||++ +|+|||||++++||++|++|+  ++.+                     
T Consensus         2 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~-~~dTl~G~v~~~lg~iP~~Gd~~~v~~---------------------   59 (87)
T 2rk5_A            2 SREIADNTYIVLGTMTLNDFNEYFETDLESD-NVDTIAGFYLTGVGTIPSQEEKEHFEV---------------------   59 (87)
T ss_dssp             EEEEETTEEEEETTSBHHHHHHHHTCCCCCT-TCCBHHHHHHHHHCSCCCSSSCCEEEE---------------------
T ss_pred             eEEeCCCEEEEEccCCHHHHHHHhCCCCCCC-CcccHHHHHHHHhCcCCCCCCcEEEEE---------------------
Confidence            4567899999999999999999999999874 699999999999999999999  9988                     


Q ss_pred             ccccccce----EEEEEEEecCCeeeEEEEEE
Q 041526          188 DSKEKHQI----YKLEILAGNARKVSAVRFER  215 (252)
Q Consensus       188 ~~~~~~~~----~~~~V~~~~~~ri~~V~i~~  215 (252)
                            ++    |+|+|++|+++||.+|++++
T Consensus        60 ------~~~~~~~~f~V~~~~~~rI~~v~v~~   85 (87)
T 2rk5_A           60 ------ESNGKHLELINDKVKDGRVTKLKILV   85 (87)
T ss_dssp             ------EETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred             ------CCceEEEEEEEEEEeCCEEEEEEEEe
Confidence                  46    99999999999999999974

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4

Probab=99.79  E-value=4.8e-19  Score=134.76  Aligned_cols=78  Identities=18%  Similarity=0.398  Sum_probs=71.4

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCC------CccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEG------HQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTEN  182 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~------~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~  182 (252)
                      .+.+.++|+|+++|+++|++|++.||+  |+.      ++|+||||||+++||++|+.|+++.+                
T Consensus         8 ~i~~~~dg~~~v~G~~~l~dl~~~l~~--~~~~~~~~~~~~~TlgG~i~~~lg~iP~~Gd~v~~----------------   69 (93)
T 2nqw_A            8 PFKVLGDGSYLFEGKTSLSDVRHYLDL--PENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVY----------------   69 (93)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHTC--CTTTTHHHHTTCSBHHHHHHHHHCSCCCTTCEEEE----------------
T ss_pred             CeEEeCCCEEEEEcccCHHHHHHHhCC--CcccccccCCCcccHHHHHHHHhCcCCCCCCEEEE----------------
Confidence            477789999999999999999999998  542      46999999999999999999999998                


Q ss_pred             CCCccccccccceEEEEEEEecCCeeeEEEEEE
Q 041526          183 GSDRQDSKEKHQIYKLEILAGNARKVSAVRFER  215 (252)
Q Consensus       183 ~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~  215 (252)
                                 ++|+|+|++|+++||.+|+|++
T Consensus        70 -----------~~~~f~V~~~d~~rI~~V~v~~   91 (93)
T 2nqw_A           70 -----------EPFRFQVTQMDKRRIIEIKIFP   91 (93)
T ss_dssp             -----------TTEEEEEEEECSSSEEEEEECC
T ss_pred             -----------CCEEEEEEEeeCCEEEEEEEEE
Confidence                       5899999999999999999863

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=99.74  E-value=1.8e-18  Score=134.01  Aligned_cols=81  Identities=20%  Similarity=0.403  Sum_probs=74.5

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .+.+.++|+|+++|+++|+||++.||++||++ +|+|||||++++||++|+.|+++.+                      
T Consensus         5 ~i~~~~dg~~~v~G~~~l~dl~~~lg~~l~~e-~~dTlgGli~~~lg~iP~~Gd~v~~----------------------   61 (101)
T 2p3h_A            5 DITETSPDKWLIDGDTPLDEVERAIGYELPEG-DYETISGLLFDHANALLKTGDVIEI----------------------   61 (101)
T ss_dssp             CEEEEETTEEEEETTCBHHHHHHHHTSCCCCS-SCCBHHHHHHHHHCSCCCTTCEEEE----------------------
T ss_pred             ceEEeCCCEEEEEccCCHHHHHHHhCCCCCCC-CCccHHHHHHHHhCCCCCCCCEEEE----------------------
Confidence            46778999999999999999999999999874 7999999999999999999999998                      


Q ss_pred             cccccceEEEEEEEecCC-----eeeEEEEEEcCC
Q 041526          189 SKEKHQIYKLEILAGNAR-----KVSAVRFERINN  218 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~-----ri~~V~i~~~~~  218 (252)
                           + |+|+|.+|+++     ||.+|++++...
T Consensus        62 -----~-~~f~V~~~d~~~~~r~rI~~V~v~~~~~   90 (101)
T 2p3h_A           62 -----P-LDFEPEDYLNNTSPTQRILRITVLEVER   90 (101)
T ss_dssp             -----E-CCCCGGGGTTCSSCCCCEEEEEEEEEET
T ss_pred             -----e-EEEEEEEEeCCCCcCCEEEEEEEEECCC
Confidence                 6 99999999999     999999985433

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.69  E-value=2.8e-17  Score=130.40  Aligned_cols=96  Identities=47%  Similarity=0.781  Sum_probs=76.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+.. ...++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        39 ~pVvd~~~~~~vGivt~~dl~~~~~~~~~-~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGii  116 (136)
T 3lfr_A           39 YPVIGESHDDVLGVLLAKDLLPLILKADG-DSDDVKKLL-RPATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLV  116 (136)
T ss_dssp             EEEESSSTTCEEEEEEGGGGGGGGGSSSG-GGCCGGGTC-BCCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCCCcEEEEEEHHHHHHHHHhccC-CCcCHHHHc-CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEE
Confidence            59998755799999999999987653221 345788999 6789999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCC
Q 041526           81 TLEDVVEEIVGEIFDESD   98 (252)
Q Consensus        81 TleDIleeIvGei~DE~d   98 (252)
                      |..||+++++|++.||++
T Consensus       117 t~~Dil~~l~~~~~de~~  134 (136)
T 3lfr_A          117 TIEDVLEQIVGDIEDEHD  134 (136)
T ss_dssp             EHHHHHTTC---------
T ss_pred             EHHHHHHHHhCCCcCccc
Confidence            999999999999999875

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=1.1e-16  Score=126.04  Aligned_cols=92  Identities=25%  Similarity=0.512  Sum_probs=79.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+......++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        38 ~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGii  116 (130)
T 3hf7_A           38 IVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV  116 (130)
T ss_dssp             EEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEe
Confidence            599976557999999999999887654322235688888 8889999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..|++++++|++
T Consensus       117 t~~Dil~~l~g~i  129 (130)
T 3hf7_A          117 TVEDILEEIVGDF  129 (130)
T ss_dssp             EHHHHHHHHHC--
T ss_pred             eHHHHHHHHhCCC
Confidence            9999999999987

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.67  E-value=2.5e-16  Score=129.93  Aligned_cols=94  Identities=38%  Similarity=0.664  Sum_probs=82.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+.   ..++.++| +++.+|++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        78 ~pVvd~~~~~lvGivt~~dl~~~~~~~~---~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGii  153 (172)
T 3lhh_A           78 FPVCRNNVDDMVGIISAKQLLSESIAGE---RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLV  153 (172)
T ss_dssp             EEEESSSTTSEEEEEEHHHHHHHHHTTC---CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             EEEEeCCCCeEEEEEEHHHHHHHHhhcC---cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEe
Confidence            5999875579999999999998776543   45789999 8999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCC
Q 041526           81 TLEDVVEEIVGEIFDESD   98 (252)
Q Consensus        81 TleDIleeIvGei~DE~d   98 (252)
                      |..||+++++|++.||++
T Consensus       154 t~~Dil~~l~~~~~de~~  171 (172)
T 3lhh_A          154 TLQDMMDALTGEFFQEDG  171 (172)
T ss_dssp             EHHHHHHHHHTTCC----
T ss_pred             eHHHHHHHHhCCCccccC
Confidence            999999999999998864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.66  E-value=2.3e-16  Score=131.26  Aligned_cols=94  Identities=28%  Similarity=0.450  Sum_probs=83.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +|||+++.++++|+|+.+||+.++..+.   ..++. ++ +++.+|++++++.++++.|++++.++++|+|++|.++|||
T Consensus        72 ~pVvd~~~~~lvGivt~~Dl~~~~~~~~---~~~v~-~~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiI  146 (173)
T 3ocm_A           72 FPVCRGSLDEVVGIGRAKDLVADLITEG---RVRRN-RL-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLV  146 (173)
T ss_dssp             EEEESSSTTSEEEEEEHHHHHHHHHHHS---SCCGG-GS-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEE
T ss_pred             EEEEeCCCCCEEEEEEHHHHHHHHhcCC---cchhH-hc-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEE
Confidence            6999875579999999999998765432   24566 55 8899999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCc
Q 041526           81 TLEDVVEEIVGEIFDESDS   99 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~   99 (252)
                      |..||+++++|++.||++.
T Consensus       147 T~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A          147 TPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             CHHHHHHHHHCCCCCTTSC
T ss_pred             eHHHHHHHHhCcCCCcccc
Confidence            9999999999999999874

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.64  E-value=2.6e-16  Score=126.95  Aligned_cols=95  Identities=35%  Similarity=0.646  Sum_probs=77.9

Q ss_pred             CeEE-ecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVF-EQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~-~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+ +++.++++|+|+.+||+.++..+.   ..++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+
T Consensus        56 ~pVv~d~~~~~lvGivt~~dl~~~~~~~~---~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGi  131 (153)
T 3oco_A           56 FPVTADNDKDKIIGYAYNYDIVRQARIDD---KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGI  131 (153)
T ss_dssp             EEEEETTEEEEEEEEEEHHHHHHHHHHHT---TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEE
T ss_pred             EEEEECCCCCcEEEEEEHHHHHhHHhcCC---CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEE
Confidence            5899 544478999999999998765432   35688999 899999999999999999999999999999999999999


Q ss_pred             EcchhHHHHHHhhhccCCCc
Q 041526           80 VTLEDVVEEIVGEIFDESDS   99 (252)
Q Consensus        80 VTleDIleeIvGei~DE~d~   99 (252)
                      ||..||+++++|++.||++.
T Consensus       132 vt~~dil~~l~~~~~de~~~  151 (153)
T 3oco_A          132 ITDKDVYEELFGNLRDEQDD  151 (153)
T ss_dssp             ECHHHHHHHHHC--------
T ss_pred             eeHHHHHHHHhccCCCcccC
Confidence            99999999999999998863

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.63  E-value=7.6e-16  Score=120.79  Aligned_cols=88  Identities=45%  Similarity=0.815  Sum_probs=77.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+    ..++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        41 ~pVvd~~~~~~~Givt~~dl~~~~~~~----~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Gii  115 (129)
T 3jtf_A           41 FPVYEDDRDNIIGILLAKDLLRYMLEP----ALDIRSLV-RPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLV  115 (129)
T ss_dssp             EEEESSSTTCEEEEEEGGGGGGGGTCT----TSCGGGGC-BCCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEE
T ss_pred             EEEEcCCCCcEEEEEEHHHHHhHhccC----CcCHHHHh-CCCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEE
Confidence            599987557999999999999776432    35688888 6789999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..||+++++|+|
T Consensus       116 t~~Dil~~l~gei  128 (129)
T 3jtf_A          116 TMEDVLEQIVGDI  128 (129)
T ss_dssp             EHHHHHHHHHHTC
T ss_pred             EHHHHHHHHhCCC
Confidence            9999999999987

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.62  E-value=1.5e-15  Score=119.10  Aligned_cols=89  Identities=28%  Similarity=0.578  Sum_probs=79.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+.  ...++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        42 ~pVvd~~~~~~~Givt~~dl~~~~~~~~--~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGiv  118 (130)
T 3i8n_A           42 PLVYSEQKDNIIGFVHRLELFKMQQSGS--GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLV  118 (130)
T ss_dssp             CEEESSSTTCEEEECCHHHHHHHHHTTT--TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEE
T ss_pred             EEEEeCCCCcEEEEEEHHHHHHHHhcCC--CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEE
Confidence            6999875579999999999998776543  246789999 7889999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhh
Q 041526           81 TLEDVVEEIVGE   92 (252)
Q Consensus        81 TleDIleeIvGe   92 (252)
                      |..||+++++|+
T Consensus       119 t~~dil~~l~ge  130 (130)
T 3i8n_A          119 TLEDIFEHLVGE  130 (130)
T ss_dssp             EHHHHHHHHHTC
T ss_pred             EHHHHHHHHcCC
Confidence            999999999885

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.61  E-value=1.9e-15  Score=120.86  Aligned_cols=90  Identities=33%  Similarity=0.620  Sum_probs=80.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+.   ..++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        59 ~pVvd~~~~~lvGivt~~dl~~~~~~~~---~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Gii  134 (148)
T 3lv9_A           59 YPVCRKNKDDILGFVHIRDLYNQKINEN---KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVV  134 (148)
T ss_dssp             EEEESSSTTSEEEEEEHHHHHHHHHHHS---CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEHHHHHHHHhcCC---CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEE
Confidence            5999875479999999999998765432   35688999 8999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhc
Q 041526           81 TLEDVVEEIVGEIF   94 (252)
Q Consensus        81 TleDIleeIvGei~   94 (252)
                      |..||+++++|+|.
T Consensus       135 t~~dil~~l~~~i~  148 (148)
T 3lv9_A          135 TIEDILEEIVGEIQ  148 (148)
T ss_dssp             EHHHHHHHHHHTC-
T ss_pred             EHHHHHHHHhCcCC
Confidence            99999999999873

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.60  E-value=2.2e-15  Score=117.65  Aligned_cols=89  Identities=42%  Similarity=0.719  Sum_probs=76.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+.  ...++.++| +++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus        39 ~pVvd~~~~~~vGivt~~dl~~~~~~~~--~~~~v~~~m-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Gii  115 (127)
T 3nqr_A           39 FPVISEDKDHIEGILMAKDLLPFMRSDA--EAFSMDKVL-RTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLV  115 (127)
T ss_dssp             EEEESSSTTCEEEEEEGGGGGGGGSTTC--CCCCHHHHC-BCCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCCCcEEEEEEHHHHHHHHhccC--CCCCHHHHc-CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEE
Confidence            5899875579999999999998764332  246789999 6789999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhh
Q 041526           81 TLEDVVEEIVGE   92 (252)
Q Consensus        81 TleDIleeIvGe   92 (252)
                      |..||+++++|+
T Consensus       116 t~~dll~~l~ge  127 (127)
T 3nqr_A          116 TIEDILELIVGE  127 (127)
T ss_dssp             EHHHHHHHC---
T ss_pred             EHHHHHHHHhCC
Confidence            999999999875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.52  E-value=2.3e-14  Score=117.18  Aligned_cols=92  Identities=18%  Similarity=0.332  Sum_probs=75.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc----ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL----LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~----~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||+++ .++++|+|+.+|++.++.....    ....++.++|.+++.++++++++.++++.|.+++  +++|||++|.+
T Consensus        51 ~pVvd~-~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l  127 (156)
T 3k6e_A           51 VPVVTD-EKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIF  127 (156)
T ss_dssp             EEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBE
T ss_pred             EEEEcC-CCcEEEEEEecchhhhhhhcccccccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEE
Confidence            699975 4789999999999877643211    1235688899999999999999999999998654  58899999999


Q ss_pred             EEEEcchhHHHHHHhhhcc
Q 041526           77 VGVVTLEDVVEEIVGEIFD   95 (252)
Q Consensus        77 vGIVTleDIleeIvGei~D   95 (252)
                      +||||..||++++.+.+.+
T Consensus       128 ~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A          128 QGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             EEEEEHHHHHHHHHHHSCC
T ss_pred             EEEEEHHHHHHHHHHHhcc
Confidence            9999999999999776644

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=4.1e-14  Score=114.65  Aligned_cols=83  Identities=45%  Similarity=0.785  Sum_probs=73.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++.++++|+|+.+||+.++..+   ...++.++| +++.+|++++++.++++.|++++.++++|+|++|.++|+|
T Consensus        74 ~pVvd~~~~~lvGivt~~dl~~~~~~~---~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Giv  149 (156)
T 3oi8_A           74 FPVIGEDKDEVLGILHAKDLLKYMFNP---EQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLV  149 (156)
T ss_dssp             EEEESSSTTCEEEEEEGGGGGGGSSCG---GGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEHHHHHHHHHcC---CcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEE
Confidence            599987556999999999999765432   245789999 6789999999999999999999999999999999999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..||++
T Consensus       150 t~~Dile  156 (156)
T 3oi8_A          150 TFEDIIE  156 (156)
T ss_dssp             EHHHHCC
T ss_pred             EHHHhcC
Confidence            9999864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.39  E-value=1.3e-12  Score=100.10  Aligned_cols=86  Identities=17%  Similarity=0.336  Sum_probs=76.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|++.++..+.    .++.++|.+++.++++++++.++++.|.+++.+.++|+|++|.++|+|
T Consensus        35 ~~Vvd~-~~~~~G~vt~~dl~~~~~~~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giv  109 (122)
T 3kpb_A           35 LPIVDE-HGKLVGIITSWDIAKALAQNK----KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIV  109 (122)
T ss_dssp             EEEECT-TSBEEEEECHHHHHHHHHTTC----CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE
T ss_pred             EEEECC-CCCEEEEEEHHHHHHHHHhcc----cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEE
Confidence            589975 378999999999998776543    368899988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHh
Q 041526           81 TLEDVVEEIVG   91 (252)
Q Consensus        81 TleDIleeIvG   91 (252)
                      |..|+++.+.+
T Consensus       110 t~~dl~~~l~~  120 (122)
T 3kpb_A          110 TSEDISRLFGG  120 (122)
T ss_dssp             EHHHHHHHHC-
T ss_pred             eHHHHHHHhhc
Confidence            99999998754

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.36  E-value=2.1e-12  Score=101.30  Aligned_cols=93  Identities=18%  Similarity=0.263  Sum_probs=78.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhH-HHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLD-YVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~-~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++ .++++|+|+.+||+. .+..+. ....++.++|.+++.++++++++.++++.|.+++.+.+ |+|+.|.++|+
T Consensus        41 ~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Gi  117 (138)
T 2yzi_A           41 LVVIND-DGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGI  117 (138)
T ss_dssp             EEEECT-TSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEE
T ss_pred             EEEEcC-CCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEE
Confidence            589975 378999999999984 333322 23457889998899999999999999999999999988 99988999999


Q ss_pred             EcchhHHHHHHhhhccC
Q 041526           80 VTLEDVVEEIVGEIFDE   96 (252)
Q Consensus        80 VTleDIleeIvGei~DE   96 (252)
                      ||..||+..+.+.+..+
T Consensus       118 it~~dil~~~~~~~~~~  134 (138)
T 2yzi_A          118 FTLSDLLEASRRRLETA  134 (138)
T ss_dssp             EEHHHHHHHHHCCSCCC
T ss_pred             EEHHHHHHHHHHHHHhh
Confidence            99999999998776543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.36  E-value=1.3e-12  Score=111.52  Aligned_cols=87  Identities=10%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+||+...      ...++.++|.+++.+|++++++.++++.|++++.+.++|||++|.++|+|
T Consensus        91 ~~Vvd~-~~~lvGivt~~dll~~~------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiI  163 (205)
T 3kxr_A           91 LFIVDE-ADKYLGTVRRYDIFKHE------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRV  163 (205)
T ss_dssp             EEEECT-TCBEEEEEEHHHHTTSC------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEE
T ss_pred             EEEEcC-CCeEEEEEEHHHHHhCC------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEE
Confidence            477765 58999999999998531      23568899988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhc
Q 041526           81 TLEDVVEEIVGEIF   94 (252)
Q Consensus        81 TleDIleeIvGei~   94 (252)
                      |..||++.+..+..
T Consensus       164 T~~Dil~~i~~e~~  177 (205)
T 3kxr_A          164 TLRAATALVREHYE  177 (205)
T ss_dssp             EHHHHHHHHHHHHC
T ss_pred             EHHHHHHHHHHHHH
Confidence            99999999866553

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.35  E-value=1.3e-12  Score=101.65  Aligned_cols=88  Identities=15%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+|+.+||+.++..+.. ...++.++|.+++.++++++++.++++.|.+++.+..+|+|++|.++|+|
T Consensus        39 ~~Vvd~--~~~~Givt~~dl~~~~~~~~~-~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Gii  115 (128)
T 3gby_A           39 APVLDG--ERYLGMVHLSRLLEGRKGWPT-VKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVV  115 (128)
T ss_dssp             EEEEET--TEEEEEEEHHHHHTTCSSSCC-TTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEE
T ss_pred             EEEEEC--CEEEEEEEHHHHHHHHhhCCc-ccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEE
Confidence            589987  899999999999976654321 12468899988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHh
Q 041526           81 TLEDVVEEIVG   91 (252)
Q Consensus        81 TleDIleeIvG   91 (252)
                      |..|+++++..
T Consensus       116 t~~dll~~l~~  126 (128)
T 3gby_A          116 SRKRILGFLAE  126 (128)
T ss_dssp             EHHHHHHHHHT
T ss_pred             EHHHHHHHHHh
Confidence            99999998754

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.35  E-value=3.6e-12  Score=99.29  Aligned_cols=90  Identities=19%  Similarity=0.285  Sum_probs=78.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++  .++++|+|+.+|++..+..+.. ...++.++|.+++.++++++++.++++.|.+++.+.++|+|+.|.++|+|
T Consensus        38 ~~Vvd--~~~~~Givt~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Gii  114 (133)
T 2ef7_A           38 VIVVD--GNKPVGIITERDIVKAIGKGKS-LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII  114 (133)
T ss_dssp             EEEEE--TTEEEEEEEHHHHHHHHHTTCC-TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             EEEEE--CCEEEEEEcHHHHHHHHhcCCC-cccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEE
Confidence            58998  3789999999999877654422 24578899988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..|++..+...+
T Consensus       115 t~~dll~~~~~~~  127 (133)
T 2ef7_A          115 SIRDITRAIDDMF  127 (133)
T ss_dssp             EHHHHHHHHHHHC
T ss_pred             EHHHHHHHHHHHH
Confidence            9999999886554

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.35  E-value=3.9e-12  Score=97.71  Aligned_cols=88  Identities=17%  Similarity=0.250  Sum_probs=76.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++  .++++|+|+.+|++..+..+......++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|+|
T Consensus        35 ~~Vvd--~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvi  111 (125)
T 1pbj_A           35 SVVVK--EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVI  111 (125)
T ss_dssp             EEEEE--TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEE
T ss_pred             EEEEe--CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEE
Confidence            58998  37899999999999776554322346789999889999999999999999999999999999998 9999999


Q ss_pred             cchhHHHHHHh
Q 041526           81 TLEDVVEEIVG   91 (252)
Q Consensus        81 TleDIleeIvG   91 (252)
                      |..|++..+.+
T Consensus       112 t~~dl~~~l~~  122 (125)
T 1pbj_A          112 SATDILRAKMA  122 (125)
T ss_dssp             EHHHHHHHHC-
T ss_pred             EHHHHHHHHHh
Confidence            99999998754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.34  E-value=4.8e-12  Score=99.31  Aligned_cols=90  Identities=23%  Similarity=0.387  Sum_probs=74.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcC------CceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHK------PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r------~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||++++ ++++|+|+.+|++..+..+. .....++.++|.+      ++.++++++++.++++.|.+++.+.++|+|++
T Consensus        45 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~  123 (144)
T 2nyc_A           45 VPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV  123 (144)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             eeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCC
Confidence            5899754 78999999999998765431 0123568888865      68999999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHHh
Q 041526           74 GGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        74 G~~vGIVTleDIleeIvG   91 (252)
                      |.++|+||..||+..+.+
T Consensus       124 g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A          124 GRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             SBEEEEEEHHHHHHHHHH
T ss_pred             CCEEEEEEHHHHHHHHHh
Confidence            999999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.34  E-value=1.9e-12  Score=100.84  Aligned_cols=89  Identities=20%  Similarity=0.362  Sum_probs=75.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHh-HHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLL-DYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll-~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+|+.+||+ ..+..+......++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|+
T Consensus        42 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Gi  119 (133)
T 1y5h_A           42 LPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGI  119 (133)
T ss_dssp             EEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEE
T ss_pred             EEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEE
Confidence            5899653 7899999999998 455443322346799999889999999999999999999999999999998 999999


Q ss_pred             EcchhHHHHHHh
Q 041526           80 VTLEDVVEEIVG   91 (252)
Q Consensus        80 VTleDIleeIvG   91 (252)
                      ||..||+..+.+
T Consensus       120 it~~dil~~l~~  131 (133)
T 1y5h_A          120 VTEADIARHLPE  131 (133)
T ss_dssp             EEHHHHHHTCC-
T ss_pred             EEHHHHHHHHHh
Confidence            999999988754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.33  E-value=3.6e-12  Score=100.61  Aligned_cols=88  Identities=19%  Similarity=0.228  Sum_probs=76.2

Q ss_pred             CeEEecCCC--CEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQRID--NIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~~d--~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||++++ +  +++|+|+.+||+.++..+.. ...++.++|.+++.+++++ ++.++++.|.+++.+.++|+|++|.++|
T Consensus        39 ~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~G  115 (141)
T 2rih_A           39 AVLTARD-NPKRPVAVVSERDILRAVAQRLD-LDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVG  115 (141)
T ss_dssp             EEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-TTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             EEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-CCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEE
Confidence            5899863 4  89999999999987654422 2457889998899999999 9999999999999999999999999999


Q ss_pred             EEcchhHHHHHHh
Q 041526           79 VVTLEDVVEEIVG   91 (252)
Q Consensus        79 IVTleDIleeIvG   91 (252)
                      +||..||++++.+
T Consensus       116 iit~~dll~~~~~  128 (141)
T 2rih_A          116 VLSIRDLCFERAI  128 (141)
T ss_dssp             EEEHHHHHSCHHH
T ss_pred             EEEHHHHHHHHHH
Confidence            9999999988754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.33  E-value=3.6e-12  Score=103.70  Aligned_cols=94  Identities=21%  Similarity=0.220  Sum_probs=78.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+|+.+||+.++..+. .....++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|+
T Consensus        61 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Gi  138 (165)
T 3fhm_A           61 VVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGI  138 (165)
T ss_dssp             EEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEE
T ss_pred             EEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEE
Confidence            5899753 78999999999998765421 12346788999889999999999999999999999999999999 999999


Q ss_pred             EcchhHHHHHHhhhccC
Q 041526           80 VTLEDVVEEIVGEIFDE   96 (252)
Q Consensus        80 VTleDIleeIvGei~DE   96 (252)
                      ||..||+..+.++...+
T Consensus       139 it~~dil~~~~~~~~~~  155 (165)
T 3fhm_A          139 ISIGDVVKARIGEIEAE  155 (165)
T ss_dssp             EEHHHHHHHTTCC----
T ss_pred             EEHHHHHHHHHHHHHHH
Confidence            99999999987776543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.32  E-value=2.8e-12  Score=106.31  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHc-CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~-~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+|+.+||+..+.. .......++.++|.+++.++++++++.++++.|.+++.+.++|+|++|.++|+
T Consensus        43 ~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Gi  121 (184)
T 1pvm_A           43 LVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGI  121 (184)
T ss_dssp             EEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEE
T ss_pred             EEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEE
Confidence            5899754 789999999999976542 11123457889998889999999999999999999999999999999999999


Q ss_pred             EcchhHHHHHHh-hhcc
Q 041526           80 VTLEDVVEEIVG-EIFD   95 (252)
Q Consensus        80 VTleDIleeIvG-ei~D   95 (252)
                      ||..||++.+.+ ++.+
T Consensus       122 vt~~dll~~~~~~~~~~  138 (184)
T 1pvm_A          122 VTLTDLSRYLSRASITD  138 (184)
T ss_dssp             EEHHHHTTTSCHHHHHH
T ss_pred             EEHHHHHHHHHhhhHHH
Confidence            999999998887 7654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.32  E-value=2.4e-12  Score=114.17  Aligned_cols=87  Identities=22%  Similarity=0.315  Sum_probs=73.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++...      ...++.++|.+++.+|++++++.++++.|++++.+.++|||++|.++|+|
T Consensus       174 ~~Vvd~~-~~lvGivt~~dll~~~------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiv  246 (278)
T 2yvy_A          174 IYVVDEK-GRLKGVLSLRDLIVAD------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIV  246 (278)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHSC------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred             EEEECCC-CCEEEEEEHHHHhcCC------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEE
Confidence            5899764 7899999999998531      13568889988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhc
Q 041526           81 TLEDVVEEIVGEIF   94 (252)
Q Consensus        81 TleDIleeIvGei~   94 (252)
                      |.+||++.+.++..
T Consensus       247 T~~Dil~~i~~e~~  260 (278)
T 2yvy_A          247 TVDDVLDVLEAEAT  260 (278)
T ss_dssp             EHHHHHHHC-----
T ss_pred             EHHHHHHHHHHHhH
Confidence            99999999877654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.32  E-value=5.1e-12  Score=98.85  Aligned_cols=91  Identities=18%  Similarity=0.391  Sum_probs=76.6

Q ss_pred             CeEEecCCCCEEEEEEHHHH-hHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcC-----CceEEEecCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDL-LDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRK-----VHMAVVLNEYG   74 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDl-l~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~-----~~~AiVVDE~G   74 (252)
                      +||++++ ++++|+|+.+|+ +..+..+. ....++.++|.+++.++++++++.++++.|.+++     .+.++|+|+.|
T Consensus        42 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g  119 (138)
T 2p9m_A           42 LPVIDDE-NKVIGIVTTTDIGYNLIRDKY-TLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN  119 (138)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHHHTTTCC-CSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTS
T ss_pred             EEEECCC-CeEEEEEEHHHHHHHHHhhcc-cCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCC
Confidence            5899753 789999999999 87654332 1345789999889999999999999999999999     99999999899


Q ss_pred             CEEEEEcchhHHHHHHhhh
Q 041526           75 GTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        75 ~~vGIVTleDIleeIvGei   93 (252)
                      .++|+||..|++..+.++|
T Consensus       120 ~~~Giit~~dll~~~~~~i  138 (138)
T 2p9m_A          120 KLVGIISDGDIIRTISKII  138 (138)
T ss_dssp             BEEEEEEHHHHHHHHHHC-
T ss_pred             eEEEEEEHHHHHHHHHhhC
Confidence            9999999999999886643

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.31  E-value=4.1e-12  Score=100.42  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=74.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC-------------CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG-------------ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMA   67 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~-------------~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~A   67 (252)
                      +||++++ ++++|+|+.+||+..+..+             ......++.++|.+++.++++++++.++++.|.+++.+.+
T Consensus        41 ~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l  119 (152)
T 4gqw_A           41 FPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRL  119 (152)
T ss_dssp             EEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEE
T ss_pred             EEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEE
Confidence            5899764 7899999999998532111             0012356899998888999999999999999999999999


Q ss_pred             EEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           68 VVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        68 iVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      +|+|+.|.++|+||..||+..+....
T Consensus       120 ~Vvd~~g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A          120 PVVDSDGKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             EEECTTSBEEEEEEHHHHHHHHHC--
T ss_pred             EEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            99999999999999999999987644

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.31  E-value=7.7e-12  Score=101.11  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=77.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCC---C
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYG---G   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G---~   75 (252)
                      +||++++ ++++|+|+.+||+..+..+......++.++|.+  ++.++++++++.++++.|.+++.+.++|+|+.|   .
T Consensus        50 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~  128 (159)
T 3fv6_A           50 LFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFE  128 (159)
T ss_dssp             EEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEE
T ss_pred             EEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCccee
Confidence            5899753 789999999999987644332234678999977  889999999999999999999999999999988   9


Q ss_pred             EEEEEcchhHHHHHHh
Q 041526           76 TVGVVTLEDVVEEIVG   91 (252)
Q Consensus        76 ~vGIVTleDIleeIvG   91 (252)
                      ++|+||..||+..+..
T Consensus       129 ~vGiit~~dil~~l~~  144 (159)
T 3fv6_A          129 VIGRVTKTNMTKILVS  144 (159)
T ss_dssp             EEEEEEHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHH
Confidence            9999999999998854

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.30  E-value=9.6e-12  Score=98.97  Aligned_cols=91  Identities=19%  Similarity=0.179  Sum_probs=75.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-----cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-----LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-----~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~   75 (252)
                      +||+++ .++++|+|+.+||+..+....     .....++.++|.+++.++++++++.++++.|.+++.  .+|+|+.|.
T Consensus        51 ~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~  127 (150)
T 3lqn_A           51 IPVLDP-MYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGY  127 (150)
T ss_dssp             EEEECT-TCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCB
T ss_pred             EEEECC-CCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCc
Confidence            589975 378999999999998764211     112456889998899999999999999999998875  888999999


Q ss_pred             EEEEEcchhHHHHHHhhhc
Q 041526           76 TVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        76 ~vGIVTleDIleeIvGei~   94 (252)
                      ++|+||..||+..+.+.+.
T Consensus       128 ~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A          128 FEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             EEEEEEHHHHHHHHHHHC-
T ss_pred             EEEEEEHHHHHHHHHHHhH
Confidence            9999999999999877664

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.28  E-value=1.8e-11  Score=95.73  Aligned_cols=89  Identities=17%  Similarity=0.274  Sum_probs=74.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHH-HcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYV-QKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~-~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++  .++++|+|+.+||+..+ ..+......++.++|.+++.++++++++.++++.|.+++.+.++|+| .|.++|+
T Consensus        43 ~~Vvd--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Gi  119 (135)
T 2rc3_A           43 LLVMK--DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGL  119 (135)
T ss_dssp             EEEEE--TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred             EEEEE--CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEE
Confidence            58997  37899999999998643 33221234678899988999999999999999999999999999999 6999999


Q ss_pred             EcchhHHHHHHhh
Q 041526           80 VTLEDVVEEIVGE   92 (252)
Q Consensus        80 VTleDIleeIvGe   92 (252)
                      ||..|++..+.++
T Consensus       120 it~~dll~~~~~~  132 (135)
T 2rc3_A          120 LSIGDLVKDAISQ  132 (135)
T ss_dssp             EEHHHHHHHHHC-
T ss_pred             EEHHHHHHHHHhc
Confidence            9999999988653

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.28  E-value=1.6e-11  Score=99.53  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=76.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHc--------CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQK--------GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE   72 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~--------~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE   72 (252)
                      +||+++ .++++|+|+.+||+..+..        .......++.++|.+++.++++++++.+++..|.+++.+.++|+|+
T Consensus        39 ~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  117 (160)
T 2o16_A           39 VPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  117 (160)
T ss_dssp             EEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             EEEEcC-CCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC
Confidence            589975 3789999999999876532        0111245789999889999999999999999999999999999998


Q ss_pred             CCCEEEEEcchhHHHHHHhhh
Q 041526           73 YGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        73 ~G~~vGIVTleDIleeIvGei   93 (252)
                       |.++|+||..||+..+...+
T Consensus       118 -g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A          118 -DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             -TEEEEEECHHHHHHHHHHHH
T ss_pred             -CEEEEEEEHHHHHHHHHHHh
Confidence             99999999999999987655

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.28  E-value=3.5e-12  Score=104.45  Aligned_cols=90  Identities=23%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC----------------------cccccchhhhhcCCceecCCCCcHHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE----------------------LLESTKVADMAHKPAYFVPDSMSVWNLLRE   58 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~----------------------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~   58 (252)
                      +||++++ ++++|+|+.+|++++.....                      .....++.++|.+++.+|++++++.++++.
T Consensus        52 ~pVvd~~-g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~  130 (170)
T 4esy_A           52 APVVDQN-GHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQ  130 (170)
T ss_dssp             EEEECTT-SCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHH
T ss_pred             EEEEcCC-ccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHH
Confidence            5999764 78999999999986532110                      001246888999999999999999999999


Q ss_pred             HHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           59 FRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        59 mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      |.+++.+..+|+|+ |.++||||..||++.|+.+
T Consensus       131 m~~~~~~~lpVvd~-g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A          131 MRRHGIHRIPVVQD-GVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             HHHTTCSEEEEEET-TEEEEEEEHHHHTTTSCCC
T ss_pred             HHHcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence            99999999999985 9999999999999988654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.27  E-value=2.3e-11  Score=97.59  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=79.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||.+  .++++|+|+.+||+.++.... .....++.++|.+++.++++++++.++++.|.+++.+.++|+| .|.++|+
T Consensus        47 ~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Gi  123 (157)
T 4fry_A           47 LLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGL  123 (157)
T ss_dssp             EEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred             EEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEE
Confidence            47854  479999999999998764322 1134679999988999999999999999999999999999999 6999999


Q ss_pred             EcchhHHHHHHhhhccCC
Q 041526           80 VTLEDVVEEIVGEIFDES   97 (252)
Q Consensus        80 VTleDIleeIvGei~DE~   97 (252)
                      ||..||+..+.+....+.
T Consensus       124 it~~dil~~l~~~~~~~~  141 (157)
T 4fry_A          124 ISIGDLVKSVIADQQFTI  141 (157)
T ss_dssp             EEHHHHHHHHHTTCCCCC
T ss_pred             EEHHHHHHHHHHHHHhhH
Confidence            999999999988776544

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.26  E-value=2.4e-11  Score=97.83  Aligned_cols=90  Identities=17%  Similarity=0.172  Sum_probs=76.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHc---------------CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCc
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQK---------------GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVH   65 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~---------------~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~   65 (252)
                      +||++++  +++|+|+.+||+.++..               .......++.++|.+ +.++++++++.++++.|.+++.+
T Consensus        51 ~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~  127 (157)
T 1o50_A           51 VYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQ  127 (157)
T ss_dssp             EEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             EEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCc
Confidence            5899874  89999999999976431               011134578999977 99999999999999999999999


Q ss_pred             eEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           66 MAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        66 ~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      ..+|+|+.|.++|+||..||+..+.+.+
T Consensus       128 ~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A          128 EMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             EEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             EEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence            9999998999999999999999987654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.26  E-value=2.1e-11  Score=97.52  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-----cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-----LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-----~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~   75 (252)
                      +||+++ .++++|+|+.+||+..+..+.     .....++.++|.+++.++++++++.++++.|.+++.  ++|+|+.|.
T Consensus        47 ~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~  123 (157)
T 2emq_A           47 IPVLDT-SYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGY  123 (157)
T ss_dssp             EEEECT-TCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSS
T ss_pred             EEEEcC-CCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCe
Confidence            589975 378999999999997654321     112456889998899999999999999999999876  788999999


Q ss_pred             EEEEEcchhHHHHHHhhhcc
Q 041526           76 TVGVVTLEDVVEEIVGEIFD   95 (252)
Q Consensus        76 ~vGIVTleDIleeIvGei~D   95 (252)
                      ++|+||..||+..+.+.+..
T Consensus       124 ~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A          124 FAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             EEEEEEHHHHHHHHHHTTCC
T ss_pred             EEEEEEHHHHHHHHHHHhhc
Confidence            99999999999999877653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.25  E-value=1.2e-11  Score=100.70  Aligned_cols=94  Identities=21%  Similarity=0.245  Sum_probs=77.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC---------------------------cccccchhhhhcCCceecCCCCcHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE---------------------------LLESTKVADMAHKPAYFVPDSMSVW   53 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~---------------------------~~~~~~l~~~~~r~~~~Vpe~~~l~   53 (252)
                      +||++++ ++++|+|+.+||+.......                           .....++.++|.+++.++++++++.
T Consensus        40 ~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~  118 (180)
T 3sl7_A           40 LPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLE  118 (180)
T ss_dssp             EEEECTT-CBEEEEEEHHHHTCC-------------------CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHH
T ss_pred             EEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHH
Confidence            5899763 78999999999984311000                           0124568999988899999999999


Q ss_pred             HHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhcc
Q 041526           54 NLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFD   95 (252)
Q Consensus        54 ~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~D   95 (252)
                      ++++.|.+++.+.++|+|+.|.++|+||..||+.++......
T Consensus       119 ~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~  160 (180)
T 3sl7_A          119 DAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRN  160 (180)
T ss_dssp             HHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999876543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.23  E-value=1.6e-11  Score=98.10  Aligned_cols=85  Identities=19%  Similarity=0.279  Sum_probs=73.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+||+..+..+......++.++|.+++.++++++++.++++.|.+++.+.++|+|+. .++|+|
T Consensus        64 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Gii  141 (149)
T 3k2v_A           64 TAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVV  141 (149)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEE
T ss_pred             EEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEE
Confidence            5899753 78999999999998776543223567999998889999999999999999999999999999975 999999


Q ss_pred             cchhHHH
Q 041526           81 TLEDVVE   87 (252)
Q Consensus        81 TleDIle   87 (252)
                      |..||++
T Consensus       142 t~~dil~  148 (149)
T 3k2v_A          142 HMHDLLR  148 (149)
T ss_dssp             EHHHHTC
T ss_pred             EHHHhhc
Confidence            9999874

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.23  E-value=2.7e-11  Score=107.96  Aligned_cols=91  Identities=23%  Similarity=0.369  Sum_probs=78.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcC------CceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHK------PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r------~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||+++ .++++|+|+.+|++.++..+. .....++.++|.+      ++.++++++++.++++.|.+++.+.++|+|++
T Consensus       224 ~pVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~  302 (323)
T 3t4n_C          224 VPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV  302 (323)
T ss_dssp             EEEECT-TCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTT
T ss_pred             EEEECC-CCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCC
Confidence            589975 378999999999998765432 0123468899976      78999999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHHhh
Q 041526           74 GGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        74 G~~vGIVTleDIleeIvGe   92 (252)
                      |.++|+||..||+..++++
T Consensus       303 ~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          303 GRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             SBEEEEEEHHHHHHHHHHC
T ss_pred             CcEEEEEEHHHHHHHHHhc
Confidence            9999999999999999875

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.22  E-value=2.7e-11  Score=99.27  Aligned_cols=93  Identities=19%  Similarity=0.297  Sum_probs=77.1

Q ss_pred             CeEEe-cCCCCEEEEEEHHHHhHHHHcCC------------------------cccccchhhhhcCCceecCCCCcHHHH
Q 041526            1 VPVFE-QRIDNIVGIAYAMDLLDYVQKGE------------------------LLESTKVADMAHKPAYFVPDSMSVWNL   55 (252)
Q Consensus         1 lPV~~-~~~d~IvGiv~~kDll~~~~~~~------------------------~~~~~~l~~~~~r~~~~Vpe~~~l~~l   55 (252)
                      +||++ ++.++++|+|+.+||+..+..+.                        .....++.++|.+++.+|++++++.++
T Consensus        51 ~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  130 (185)
T 2j9l_A           51 FPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV  130 (185)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHH
T ss_pred             eeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHH
Confidence            58984 33579999999999997654210                        012356888998899999999999999


Q ss_pred             HHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhc
Q 041526           56 LREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        56 L~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~   94 (252)
                      +..|.+++.+.++|+| +|.++|+||..||+..+.+...
T Consensus       131 ~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~~  168 (185)
T 2j9l_A          131 VDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN  168 (185)
T ss_dssp             HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC
T ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhhc
Confidence            9999999999999998 7999999999999999876543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.22  E-value=3.4e-11  Score=97.00  Aligned_cols=93  Identities=14%  Similarity=0.080  Sum_probs=76.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-----ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-----LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-----~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~   75 (252)
                      +||++++ ++++|+|+.+||+..+.....     ....++.++|.+++.++++++++.++++.|.+++.  ++|+|+.|.
T Consensus        50 ~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~  126 (159)
T 1yav_A           50 IPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQV  126 (159)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCB
T ss_pred             EEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCe
Confidence            5899763 689999999999987643211     12457899998899999999999999999998765  888998999


Q ss_pred             EEEEEcchhHHHHHHhhhccC
Q 041526           76 TVGVVTLEDVVEEIVGEIFDE   96 (252)
Q Consensus        76 ~vGIVTleDIleeIvGei~DE   96 (252)
                      ++|+||..||+..+.+.+...
T Consensus       127 ~vGiit~~dil~~~~~~~~~~  147 (159)
T 1yav_A          127 FEGIFTRRVVLKELNKHIRSL  147 (159)
T ss_dssp             EEEEEEHHHHHHHHHHHC---
T ss_pred             EEEEEEHHHHHHHHHHHHHhh
Confidence            999999999999998777543

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.21  E-value=7e-11  Score=102.34  Aligned_cols=94  Identities=19%  Similarity=0.362  Sum_probs=79.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc--------------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCce
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL--------------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHM   66 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~--------------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~   66 (252)
                      +||++++.++++|+++.+|++..+..+..              ....+++++|.+++.++++++++.++++.|++++.+.
T Consensus        38 lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~  117 (280)
T 3kh5_A           38 LPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGG  117 (280)
T ss_dssp             EEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSE
T ss_pred             eeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCE
Confidence            59998656899999999999976532110              0124688999889999999999999999999999999


Q ss_pred             EEEecCCCCEEEEEcchhHHHHHHhhhc
Q 041526           67 AVVLNEYGGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        67 AiVVDE~G~~vGIVTleDIleeIvGei~   94 (252)
                      ++|+|++|.++|++|..|++..+.+...
T Consensus       118 ~~Vvd~~~~~~Givt~~dl~~~~~~~~~  145 (280)
T 3kh5_A          118 APIVNDENQLISLITERDVIRALLDKID  145 (280)
T ss_dssp             EEEECTTCBEEEEEEHHHHHHHHGGGSC
T ss_pred             EEEEcCCCEEEEEEEHHHHHHHHhhcCC
Confidence            9999999999999999999998876554

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.21  E-value=3.4e-11  Score=107.60  Aligned_cols=87  Identities=22%  Similarity=0.248  Sum_probs=76.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++.+.      ...++.++|.+++.+|++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus       176 ~pVvd~~-~~lvGivt~~dll~~~------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI  248 (286)
T 2oux_A          176 VYVVDQE-NHLVGVISLRDLIVND------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIV  248 (286)
T ss_dssp             EEEECTT-CBEEEEEEHHHHTTSC------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE
T ss_pred             EEEEcCC-CeEEEEEEHHHHHcCC------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE
Confidence            5899763 7899999999998641      23568999988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhc
Q 041526           81 TLEDVVEEIVGEIF   94 (252)
Q Consensus        81 TleDIleeIvGei~   94 (252)
                      |..||++.+.++..
T Consensus       249 T~~Dil~~i~~e~~  262 (286)
T 2oux_A          249 TVDDIIDVIDDEAA  262 (286)
T ss_dssp             EHHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHhH
Confidence            99999999866553

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.20  E-value=2.7e-11  Score=115.96  Aligned_cols=138  Identities=17%  Similarity=0.230  Sum_probs=99.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++..   .   ...+++++|.+++.+|++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus       194 ipVvd~~-~~lvGiVt~~Dll~~---~---~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiI  266 (473)
T 2zy9_A          194 IYVVDEK-GRLKGVLSLRDLIVA---D---PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIV  266 (473)
T ss_dssp             EEEECTT-SBEEEEEEHHHHHHS---C---TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred             EEEECCC-CcEEEEEEHHHHhcC---C---CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEE
Confidence            5899864 889999999999853   1   23578999988999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCC
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGY  156 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~  156 (252)
                      |.+|+++.+.++..++..   . .   ..+. ..++.|..++.  +..+.+.+++.+.. .-..+++|+++..+++
T Consensus       267 T~~Dil~~i~~e~~ed~~---~-~---~~i~-~~~~~~~~~~v--~~~~~~R~~wl~~~-~~~~~l~~~vi~~fe~  331 (473)
T 2zy9_A          267 TVDDVLDVLEAEATEDIH---K-L---GAVD-VPDLVYSEAGP--VALWLARVRWLVIL-ILTGMVTSSILQGFES  331 (473)
T ss_dssp             EHHHHHHHHHHHHHHHHH---H-H---TTCC-CTTCCSSSCCH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHTHH
T ss_pred             ehHhhHHHHHHHhhhhhh---h-c---cccc-cCcchhhhhHH--HHHHHHHhHHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999876542211   0 0   1111 12334443332  44455555443221 1356888888887653

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.20  E-value=2.5e-11  Score=106.94  Aligned_cols=94  Identities=17%  Similarity=0.280  Sum_probs=80.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC------CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG------ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYG   74 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~------~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G   74 (252)
                      +||+++ .++++|+|+.+|++..+...      ......++.++|.+++.++++++++.++++.|.+++.+.++|+|++|
T Consensus       190 ~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g  268 (296)
T 3ddj_A          190 LPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDN  268 (296)
T ss_dssp             EEEECT-TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             EEEEcC-CCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence            589975 37899999999999876421      00123568899988999999999999999999999999999999999


Q ss_pred             CEEEEEcchhHHHHHHhhhcc
Q 041526           75 GTVGVVTLEDVVEEIVGEIFD   95 (252)
Q Consensus        75 ~~vGIVTleDIleeIvGei~D   95 (252)
                      .++|+||..||++++.+.+..
T Consensus       269 ~~~Giit~~Dil~~l~~~~~~  289 (296)
T 3ddj_A          269 TIRGIITERDLLIALHHILVM  289 (296)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHH
T ss_pred             eEEEEEcHHHHHHHHHHHhcc
Confidence            999999999999999887754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.19  E-value=1e-10  Score=103.02  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=78.5

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+++.+|++..+....  ...++.++|.+++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus       127 lpVvd~~-~~lvGivt~~dl~~~~~~~~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Giv  203 (296)
T 3ddj_A          127 LPVVDIN-DKPVGIVTEREFLLLYKDLD--EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIV  203 (296)
T ss_dssp             EEEECTT-SCEEEEEEHHHHGGGGGGSC--CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             EEEEcCC-CcEEEEEeHHHHHHhhhccc--ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEE
Confidence            5899753 78999999999997665432  24579999989999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..|++..+...+
T Consensus       204 t~~dl~~~~~~~~  216 (296)
T 3ddj_A          204 TVVNAIKQLAKAV  216 (296)
T ss_dssp             EHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHH
Confidence            9999999986443

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.19  E-value=8e-11  Score=94.42  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=75.5

Q ss_pred             CeEEec-CCCCEEEEEEHHHHhHHHHcCCcc----cccchhhhhcCC------ceecCCCCcHHHHHHHHHHcCCceEEE
Q 041526            1 VPVFEQ-RIDNIVGIAYAMDLLDYVQKGELL----ESTKVADMAHKP------AYFVPDSMSVWNLLREFRIRKVHMAVV   69 (252)
Q Consensus         1 lPV~~~-~~d~IvGiv~~kDll~~~~~~~~~----~~~~l~~~~~r~------~~~Vpe~~~l~~lL~~mr~~~~~~AiV   69 (252)
                      +||+++ +.++++|+|+.+||+..+..+...    ...++.++|.++      +.++++++++.++++.|.+++.+.++|
T Consensus        47 ~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpV  126 (164)
T 2pfi_A           47 YPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFV  126 (164)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEE
T ss_pred             eeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEE
Confidence            589975 357899999999999776432210    124688888665      789999999999999999999999999


Q ss_pred             ecCCCCEEEEEcchhHHHHHHhhh
Q 041526           70 LNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        70 VDE~G~~vGIVTleDIleeIvGei   93 (252)
                      +| .|.++|+||..||+..+.+..
T Consensus       127 vd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          127 TS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             EE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             EE-CCEEEEEEEHHHHHHHHHhhh
Confidence            99 699999999999999987755

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.13  E-value=6.1e-11  Score=102.70  Aligned_cols=87  Identities=14%  Similarity=0.241  Sum_probs=74.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-----------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-----------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVV   69 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-----------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiV   69 (252)
                      +||++  .++++|+|+.+|++..+..+.           .....++.++|.+++.++++++++.++++.|.+++.+.++|
T Consensus       182 ~~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V  259 (280)
T 3kh5_A          182 LPVVS--EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPV  259 (280)
T ss_dssp             EEEEE--TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEE
T ss_pred             EEEEE--CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence            58884  378999999999998764211           00235688999899999999999999999999999999999


Q ss_pred             ecCCCCEEEEEcchhHHHHH
Q 041526           70 LNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        70 VDE~G~~vGIVTleDIleeI   89 (252)
                      +|++|.++|+||..||+.++
T Consensus       260 vd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          260 VDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             ECTTCBEEEEEEHHHHGGGG
T ss_pred             ECCCCeEEEEEeHHHHHHhh
Confidence            99999999999999999865

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.11  E-value=2.8e-10  Score=101.77  Aligned_cols=93  Identities=16%  Similarity=0.261  Sum_probs=78.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcC------CceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHK------PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r------~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||+++ .++++|+|+.+||+.++..+. .....++.++|.+      ++.++++++++.++++.|.+++.+.++|+|++
T Consensus       219 ~~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~  297 (334)
T 2qrd_G          219 VPIVNS-EGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN  297 (334)
T ss_dssp             EEEECT-TCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTT
T ss_pred             EEEEcC-CCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence            588875 368999999999998765432 1124568889963      78999999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHHhhhc
Q 041526           74 GGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        74 G~~vGIVTleDIleeIvGei~   94 (252)
                      |.++|+||..||+..+.+...
T Consensus       298 g~l~Giit~~dil~~~~~~~~  318 (334)
T 2qrd_G          298 LKLEGILSLADILNYIIYDKT  318 (334)
T ss_dssp             CBEEEEEEHHHHHHHHHSCCC
T ss_pred             CeEEEEEeHHHHHHHHHhccc
Confidence            999999999999999876553

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.08  E-value=2.4e-10  Score=110.60  Aligned_cols=86  Identities=21%  Similarity=0.255  Sum_probs=75.1

Q ss_pred             CeEEecC-CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC-CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQR-IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK-PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~-~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r-~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||+++. .++++|+|+.+||+..  ..   ...++.++|++ +++++++++++.++++.|++++.+.++|||++|.++|
T Consensus       147 ~pVvd~g~~~~lvGiVt~rDl~~~--~~---~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~G  221 (511)
T 3usb_A          147 VPVVNNLDERKLVGIITNRDMRFI--QD---YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQG  221 (511)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHTTC--CC---SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             EEEEecCCCCEEEEEEEehHhhhh--cc---CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEee
Confidence            5999751 4799999999999741  11   24679999976 8999999999999999999999999999999999999


Q ss_pred             EEcchhHHHHHHh
Q 041526           79 VVTLEDVVEEIVG   91 (252)
Q Consensus        79 IVTleDIleeIvG   91 (252)
                      +||.+||++++.-
T Consensus       222 iIT~~Dil~~~~~  234 (511)
T 3usb_A          222 LITIKDIEKVIEF  234 (511)
T ss_dssp             EEEHHHHHHHHHC
T ss_pred             eccHHHHHHhhhc
Confidence            9999999999853

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.07  E-value=4.3e-10  Score=100.13  Aligned_cols=130  Identities=17%  Similarity=0.311  Sum_probs=94.4

Q ss_pred             CeEEecCCC----CEEEEEEHHHHhHHHHcC---Ccccccchhhh---hcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526            1 VPVFEQRID----NIVGIAYAMDLLDYVQKG---ELLESTKVADM---AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL   70 (252)
Q Consensus         1 lPV~~~~~d----~IvGiv~~kDll~~~~~~---~~~~~~~l~~~---~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV   70 (252)
                      +||++++..    +++|+|+.+|++..+...   ......++.++   |.+++.++++++++.++++.|.+++.+.++|+
T Consensus       148 lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv  227 (323)
T 3t4n_C          148 IPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII  227 (323)
T ss_dssp             EEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             EEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            589986422    299999999999765421   11123468888   87889999999999999999999999999999


Q ss_pred             cCCCCEEEEEcchhHHHHHHhhhccCCC-cHHHHhhhcccEEEecCceEEEeCCcChHHhHhhc
Q 041526           71 NEYGGTVGVVTLEDVVEEIVGEIFDESD-SKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus        71 DE~G~~vGIVTleDIleeIvGei~DE~d-~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                      |++|.++|+||..|++..+.+...+..+ .-.++.....   ....+.+.+.+.+++.++.+.+
T Consensus       228 d~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~---~~~~~~~~v~~~~~l~~~~~~m  288 (323)
T 3t4n_C          228 DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS---DDFEGVYTCTKNDKLSTIMDNI  288 (323)
T ss_dssp             CTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGGSC---TTCCCCEEECTTCBHHHHHHHH
T ss_pred             CCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhhcc---ccCCCCEEECCCCCHHHHHHHH
Confidence            9999999999999999998776543222 1222221100   0001467889999988876654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.05  E-value=3e-10  Score=109.70  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC----CCCE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE----YGGT   76 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE----~G~~   76 (252)
                      +||++++.++++|||+.+||+..+..+......++.++|.+++.+|++++++.++++.|.+++  +++|||+    +|.+
T Consensus       419 lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~l  496 (527)
T 3pc3_A          419 LPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVEL  496 (527)
T ss_dssp             EEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEE
T ss_pred             EEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeE
Confidence            599983457999999999999876543222356799999999999999999999999996544  5799998    5999


Q ss_pred             EEEEcchhHHHHHHhhh
Q 041526           77 VGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        77 vGIVTleDIleeIvGei   93 (252)
                      +||||..||++.+....
T Consensus       497 vGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          497 KALATKLDVTTFIAAGK  513 (527)
T ss_dssp             EEEEEHHHHHHHHHTCC
T ss_pred             EEEEEHHHHHHHHHhcc
Confidence            99999999999986544

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.04  E-value=3.3e-10  Score=96.62  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||++++ ++++|+|+.+|++....      ..++.++|.+++.++++++++.++++.|.+++.+.++|+|+.|.++|+|
T Consensus        47 ~pVvd~~-~~l~Givt~~dl~~~~~------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGii  119 (213)
T 1vr9_A           47 CIVKDRE-GHFRGVVNKEDLLDLDL------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAV  119 (213)
T ss_dssp             EEEECTT-SBEEEEEEGGGGTTSCT------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEE
T ss_pred             EEEEcCC-CEEEEEEEHHHHHhhcC------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEE
Confidence            5899753 78999999999986542      2458889988899999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..|++..+....
T Consensus       120 t~~Dil~~~~~~~  132 (213)
T 1vr9_A          120 SLHDFLEALIEAL  132 (213)
T ss_dssp             EHHHHHHHHHHSC
T ss_pred             EHHHHHHHHHHHh
Confidence            9999999876443

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.04  E-value=1.1e-09  Score=97.92  Aligned_cols=93  Identities=18%  Similarity=0.332  Sum_probs=74.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC--------cccccchh-------hhhcCCceecCCCCcHHHHHHHHHHcCCc
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE--------LLESTKVA-------DMAHKPAYFVPDSMSVWNLLREFRIRKVH   65 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~--------~~~~~~l~-------~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~   65 (252)
                      +||++++.++++|+|+.+|++..+....        ......+.       ++|.+++.++++++++.++++.|++++.+
T Consensus        71 ~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~  150 (330)
T 2v8q_E           71 APLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH  150 (330)
T ss_dssp             EEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             EEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCC
Confidence            5999987688999999999987543210        00011222       34678999999999999999999999999


Q ss_pred             eEEEecC-CCCEEEEEcchhHHHHHHhhh
Q 041526           66 MAVVLNE-YGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        66 ~AiVVDE-~G~~vGIVTleDIleeIvGei   93 (252)
                      .++|+|+ +|.++|+||..|+++.+.+..
T Consensus       151 ~~~Vvd~~~~~~~Givt~~dl~~~~~~~~  179 (330)
T 2v8q_E          151 RLPVIDPESGNTLYILTHKRILKFLKLFI  179 (330)
T ss_dssp             CEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             eEEEEeCCCCcEEEEEcHHHHHHHHHHHh
Confidence            9999998 899999999999999886543

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.00  E-value=1.3e-09  Score=97.52  Aligned_cols=92  Identities=12%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHc------CCc----ccccchhhh-------hcCCc--eecCCCCcHHHHHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQK------GEL----LESTKVADM-------AHKPA--YFVPDSMSVWNLLREFRI   61 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~------~~~----~~~~~l~~~-------~~r~~--~~Vpe~~~l~~lL~~mr~   61 (252)
                      +|||+++.++++|+|+.+|++..+..      ...    ....++..+       |.+++  .++++++++.++++.|++
T Consensus        58 ~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~  137 (334)
T 2qrd_G           58 APLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK  137 (334)
T ss_dssp             EEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHH
T ss_pred             EEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHH
Confidence            59999877899999999999875421      110    001223333       45777  999999999999999999


Q ss_pred             cCCceEEEecCCCC-----EEEEEcchhHHHHHHhh
Q 041526           62 RKVHMAVVLNEYGG-----TVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        62 ~~~~~AiVVDE~G~-----~vGIVTleDIleeIvGe   92 (252)
                      ++.+.++|+|++|+     ++|+||..|+++.+.+.
T Consensus       138 ~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~  173 (334)
T 2qrd_G          138 SRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  173 (334)
T ss_dssp             SCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhh
Confidence            99999999999876     99999999999988754

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.00  E-value=3.7e-10  Score=98.21  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=83.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+++.+|++..+.      ..++.++|.+++.++++++++.++++.|.+++.+.++|+|++|.++|+|
T Consensus        35 ~pV~d~-~~~~~Giv~~~dl~~~~~------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Gii  107 (282)
T 2yzq_A           35 FPVVNK-EGKLVGIISVKRILVNPD------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL  107 (282)
T ss_dssp             EEEECT-TCCEEEEEESSCC----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             EEEEcC-CCcEEEEEEHHHHHhhhc------cCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEE
Confidence            589985 479999999999986542      2457788877789999999999999999999999999999999999999


Q ss_pred             cchhHHH-HHHhh-hccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhc
Q 041526           81 TLEDVVE-EIVGE-IFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus        81 TleDIle-eIvGe-i~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                      |..|++. .+.+. ...... -.+       +.  ..+.+.+++.+++.++.+.+
T Consensus       108 t~~di~~~~~~~~~~~~~~~-v~~-------~m--~~~~~~v~~~~~l~~~~~~~  152 (282)
T 2yzq_A          108 TVGDIIRRYFAKSEKYKGVE-IEP-------YY--QRYVSIVWEGTPLKAALKAL  152 (282)
T ss_dssp             EHHHHHHHTTTTCSGGGGCB-STT-------TS--BSCCCCEETTSBHHHHHHHH
T ss_pred             EHHHHHHHHHhccCCcccCc-HHH-------Hh--CCCCEEECCCCCHHHHHHHH
Confidence            9999998 66543 111110 011       11  23456788888888877665

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.99  E-value=1.4e-09  Score=97.24  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=75.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-ccccchhhhh------cCCceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-LESTKVADMA------HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~~~~~l~~~~------~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||+++ .++++|+|+.+|++..+..+.. ....++.++|      .+++.++++++++.++++.|.+++.+.++|+|++
T Consensus       227 ~~Vvd~-~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~  305 (330)
T 2v8q_E          227 LPVVDE-KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH  305 (330)
T ss_dssp             EEEECT-TSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             EEEECC-CCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCC
Confidence            589875 3789999999999987653311 1134678887      3789999999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHHh
Q 041526           74 GGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        74 G~~vGIVTleDIleeIvG   91 (252)
                      |.++|+||..||+..+..
T Consensus       306 g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          306 DVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             SBEEEEEEHHHHHHHHHS
T ss_pred             CcEEEEEeHHHHHHHHHh
Confidence            999999999999998754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.96  E-value=2.4e-09  Score=92.39  Aligned_cols=57  Identities=12%  Similarity=0.035  Sum_probs=48.0

Q ss_pred             cchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           33 TKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        33 ~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      .++.++|. +++.++++++++.++++.|++++.+..+|+|+.|.++|+||..|++...
T Consensus       185 ~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          185 LPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             SBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             CceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            35778897 8999999999999999999999999999999999999999999998753

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.95  E-value=1.6e-09  Score=103.53  Aligned_cols=85  Identities=15%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             CeEEec-CCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC-CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQ-RIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK-PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~-~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r-~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||+++ +.++++|+|+.+||+...  .   ...++.++|.+ ++.++++++++.++++.|++++.+.++|||++|.++|
T Consensus       124 ~pVvd~~~~~~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvG  198 (491)
T 1zfj_A          124 VPIVETLANRKLVGIITNRDMRFIS--D---YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSG  198 (491)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHHHCS--C---SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEE
T ss_pred             EEEEEeCCCCEEEEEEEHHHHhhhc--c---CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEE
Confidence            589872 358999999999998531  1   24568899976 8899999999999999999999999999999999999


Q ss_pred             EEcchhHHHHHH
Q 041526           79 VVTLEDVVEEIV   90 (252)
Q Consensus        79 IVTleDIleeIv   90 (252)
                      +||.+||++.+.
T Consensus       199 ivt~~Dil~~~~  210 (491)
T 1zfj_A          199 LITIKDIEKVIE  210 (491)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHh
Confidence            999999999986

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.92  E-value=1.1e-10  Score=112.59  Aligned_cols=89  Identities=15%  Similarity=0.052  Sum_probs=0.9

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCC--ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKP--AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~--~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||++++  .++++|+|+.+||+.. ...   ...++.++|.++  +.++++++++.++++.|++++.+.++|+|++|.+
T Consensus       131 ~pVvd~~~~~g~lvGiVt~~Dl~~~-~~~---~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~l  206 (503)
T 1me8_A          131 VAVTDDGTPHGVLLGLVTQRDYPID-LTQ---TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL  206 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEECCCcCCeEEEEEEHHHHHhh-hcc---ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            6899864  3799999999999853 111   245688999665  8999999999999999999999999999999999


Q ss_pred             EEEEcchhHHHHHHhhh
Q 041526           77 VGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        77 vGIVTleDIleeIvGei   93 (252)
                      +||||.+||++.+....
T Consensus       207 vGiIT~~Dil~~~~~~~  223 (503)
T 1me8_A          207 RYIVFRKDYDRSQVCHN  223 (503)
T ss_dssp             ---------------CC
T ss_pred             EEEEEecHHHHhhhccc
Confidence            99999999999987544

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.91  E-value=1.9e-10  Score=113.63  Aligned_cols=88  Identities=22%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-----------------------------------------------cccc
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-----------------------------------------------LEST   33 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-----------------------------------------------~~~~   33 (252)
                      +||+++ .++++|+|+.+||+..+.....                                               ....
T Consensus       490 ~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  568 (632)
T 3org_A          490 FPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTS  568 (632)
T ss_dssp             ECBBCT-TCBBCCEESHHHHTTTTTTC-----------------------------------------------------
T ss_pred             EEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeecccc
Confidence            599986 4789999999999976533200                                               0001


Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++|.+++.+|++++++.++++.|++++.+.++|+ |+|+++||||.+||+.++.
T Consensus       569 ~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCC
T ss_pred             ccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHh
Confidence            2667899999999999999999999999999999999 7899999999999987653

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.90  E-value=3e-09  Score=92.39  Aligned_cols=86  Identities=20%  Similarity=0.300  Sum_probs=72.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhH-HHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLD-YVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~-~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+++.+|++. .+..+......++.++|.++++++++++++.++++.|.+++.+.++|+|++|.++|+
T Consensus        94 ~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Gi  172 (282)
T 2yzq_A           94 VVVVDSK-GKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGI  172 (282)
T ss_dssp             EEEECTT-SCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEE
T ss_pred             EEEEcCC-CEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEE
Confidence            5898764 78999999999998 655332122356788898889999999999999999999999999999999999999


Q ss_pred             EcchhHHH
Q 041526           80 VTLEDVVE   87 (252)
Q Consensus        80 VTleDIle   87 (252)
                      ||..|++.
T Consensus       173 it~~dl~~  180 (282)
T 2yzq_A          173 VDETDLLR  180 (282)
T ss_dssp             EEGGGGGG
T ss_pred             EEHHHHhh
Confidence            99999983

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.85  E-value=6.4e-10  Score=107.18  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhc-C-CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAH-K-PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r-~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||++++ ++++|+|+.+||+..  ..   ...++.++|+ + +++++++++++.++++.|++++.+.++|||++|.++|
T Consensus       123 ~PVvd~~-~~lvGiVt~rDL~~~--~~---~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~G  196 (496)
T 4fxs_A          123 FPVVTEN-NELVGIITGRDVRFV--TD---LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKG  196 (496)
T ss_dssp             EEEECSS-SBEEEEEEHHHHTTC--CC---TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCE
T ss_pred             EEEEccC-CEEEEEEEHHHHhhc--cc---CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEE
Confidence            6999864 899999999999732  11   2456889995 3 6899999999999999999999999999999999999


Q ss_pred             EEcchhHHHHH
Q 041526           79 VVTLEDVVEEI   89 (252)
Q Consensus        79 IVTleDIleeI   89 (252)
                      +||.+||++..
T Consensus       197 iIT~~DIl~~~  207 (496)
T 4fxs_A          197 MITAKDFHKAE  207 (496)
T ss_dssp             EECCC-----C
T ss_pred             eehHhHHHHhh
Confidence            99999999864

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.85  E-value=3e-10  Score=108.95  Aligned_cols=101  Identities=28%  Similarity=0.388  Sum_probs=10.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+|+.+||+.   .    ...++.++|.+++.++++++++.++++.|++++.+.++|+|++|.++|+|
T Consensus       127 ~pVvd~--~~lvGivt~~Dl~~---~----~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGii  197 (486)
T 2cu0_A          127 LPVVED--EKVVGIITKKDIAA---R----EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI  197 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEC--CEEEEEEEHHHhcc---C----CCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEE
Confidence            689976  89999999999975   1    13568889977899999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcCh
Q 041526           81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSI  126 (252)
Q Consensus        81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L  126 (252)
                      |.+||++++.      ++.          ..+...|.|.+.|.+++
T Consensus       198 T~~Dil~~~~------~~~----------~~~~~~g~~~v~~~~~~  227 (486)
T 2cu0_A          198 TMSDLVARKK------YKN----------AVRDENGELLVAAAVSP  227 (486)
T ss_dssp             ---------C------CTT----------CCBCTTSCBCCEEEECT
T ss_pred             EHHHHHHhhh------ccc----------cccccCCceeecceech
Confidence            9999999852      110          01124567777777766

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.72  E-value=1.4e-09  Score=104.67  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhc-C-CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAH-K-PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r-~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||++  .++++|+|+.+||....  .   ...++.++|. + ++.++++++++.++++.|++++.+.++|||++|.++|
T Consensus       122 ~pVvd--~g~lvGIVt~rDl~~~~--~---~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvG  194 (490)
T 4avf_A          122 FPVVE--QGELVGIVTGRDLRVKP--N---AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRG  194 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEE--CCEEEEEEEhHHhhhcc--c---cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEE
Confidence            68998  47999999999996322  1   2356889996 3 6899999999999999999999999999999999999


Q ss_pred             EEcchhHHHHH
Q 041526           79 VVTLEDVVEEI   89 (252)
Q Consensus        79 IVTleDIleeI   89 (252)
                      +||..||++.+
T Consensus       195 iIT~~Dil~~~  205 (490)
T 4avf_A          195 LVTFRDIEKAK  205 (490)
T ss_dssp             -----------
T ss_pred             EEehHHhhhhc
Confidence            99999999975

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.70  E-value=4.1e-08  Score=86.66  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=49.1

Q ss_pred             hhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           38 MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        38 ~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      +|...|++|.++++|..+...|+..+.+.++|++ .|.++||||..||+.+|.|-
T Consensus       194 ~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~~  247 (250)
T 2d4z_A          194 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEGS  247 (250)
T ss_dssp             CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            4677888999999999999999999999999997 59999999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.47  E-value=2e-08  Score=96.12  Aligned_cols=87  Identities=17%  Similarity=0.265  Sum_probs=7.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||++++ ++++|+|+.+||+...  .   ...++.++|.+  ++.++++++++.++++.|.+++.+..+|||+.|.++|
T Consensus       129 ~pVvd~~-~~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvG  202 (494)
T 1vrd_A          129 LPVVDEE-GRLVGLLTNRDVRFEK--N---LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVG  202 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEcCC-CEEEEEEEHHHHHhhc--C---CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEE
Confidence            5888753 6899999999998531  1   23568899976  8999999999999999999999999999999999999


Q ss_pred             EEcchhHHHHHHhhh
Q 041526           79 VVTLEDVVEEIVGEI   93 (252)
Q Consensus        79 IVTleDIleeIvGei   93 (252)
                      +||..|+++.+....
T Consensus       203 iIt~~Dll~~~~~~~  217 (494)
T 1vrd_A          203 LITIKDIMSVIEHPN  217 (494)
T ss_dssp             ------CHHHHTCTT
T ss_pred             EEEHHHHHhhhcccc
Confidence            999999999987653

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.41  E-value=2.3e-07  Score=75.46  Aligned_cols=58  Identities=17%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+++++|.+++.+|++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+.
T Consensus        18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~   75 (170)
T 4esy_A           18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSI   75 (170)
T ss_dssp             SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTC
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHh
Confidence            4688999999999999999999999999999999999999999999999999987643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.36  E-value=6.8e-07  Score=67.83  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=53.6

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      +++++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++..+..
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            4678898889999999999999999999999999999999999999999999988754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.34  E-value=1.8e-06  Score=68.33  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             chhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           34 KVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        34 ~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++.++|.+  ++.++++++++.++++.|.+++...++|+|+.|.++|+||..|++..+..
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            68889977  79999999999999999999999999999999999999999999987753

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.31  E-value=2.9e-06  Score=65.78  Aligned_cols=57  Identities=26%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      .+++++|.+++.++++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   63 (138)
T 2yzi_A            7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRV   63 (138)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Confidence            457888988999999999999999999999999999999889999999999998544

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.29  E-value=2.9e-06  Score=64.41  Aligned_cols=56  Identities=29%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++++|.+++.++++++++.++++.|++++.+.++|+| .|.++|+||..|++..+..
T Consensus         3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A            3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence            5678888899999999999999999999999999999 7999999999999977643

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.28  E-value=4.1e-06  Score=67.26  Aligned_cols=59  Identities=12%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      .++.++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|++..+..
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            45788998889999999999999999999999999999988999999999999988764

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.27  E-value=1.5e-06  Score=69.66  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      .++.++|.+ ++++++++++.++++.|.+++...++|+|+.|.++|+||..|++..+++
T Consensus        17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   74 (159)
T 3fv6_A           17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIG   74 (159)
T ss_dssp             CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTS
T ss_pred             CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhc
Confidence            468889965 5699999999999999999999999999999999999999999998754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.25  E-value=2.9e-06  Score=65.64  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhH-HHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDV-VEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDI-leeIv   90 (252)
                      .++.++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|+ +..+.
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            45788898889999999999999999999999999999988999999999999 87654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.20  E-value=3.1e-08  Score=95.39  Aligned_cols=87  Identities=15%  Similarity=0.208  Sum_probs=56.0

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||++++  .++++|+|+.+|+.......   ...++.++|.+  ++.++++++++.++++.|.+++.+..+|||+.|.+
T Consensus       142 ~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~---~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  218 (514)
T 1jcn_A          142 IPITETGTMGSKLVGIVTSRDIDFLAEKD---HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDEL  218 (514)
T ss_dssp             EESCC--------CCEECTTTTC-------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCC
T ss_pred             EEEEeCCCcCCEEEEEEEHHHHHhhhhcc---CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeE
Confidence            4788653  37899999999987532111   23568889977  89999999999999999999999999999999999


Q ss_pred             EEEEcchhHHHHHH
Q 041526           77 VGVVTLEDVVEEIV   90 (252)
Q Consensus        77 vGIVTleDIleeIv   90 (252)
                      +|+||..||+..+.
T Consensus       219 vGiIt~~Dll~~~~  232 (514)
T 1jcn_A          219 VAIIARTDLKKNRD  232 (514)
T ss_dssp             C----CCCCSSCCC
T ss_pred             EEEEEHHHHHHHhh
Confidence            99999999987653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.19  E-value=2.8e-06  Score=72.92  Aligned_cols=61  Identities=11%  Similarity=0.122  Sum_probs=56.2

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      ..+++++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++..+...
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            3568899999999999999999999999999999999999999999999999999988643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.17  E-value=3e-06  Score=65.27  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      .++.++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++.
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~   62 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI   62 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHH
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHH
Confidence            3578899888999999999999999999999999999998899999999999985

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.15  E-value=3.3e-06  Score=66.56  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=53.1

Q ss_pred             cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+++++|.  +++.++++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+.
T Consensus        15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL   74 (150)
T ss_dssp             CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred             CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            45888996  45899999999999999999999999999999999999999999999875

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.15  E-value=1.8e-06  Score=66.53  Aligned_cols=58  Identities=19%  Similarity=0.115  Sum_probs=53.3

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +.+++++|.+++.++++++++.++++.|++++.+.++|+|+ |.++|+||..|++..+.
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~   61 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRK   61 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCS
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence            45688999999999999999999999999999999999999 99999999999987653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.15  E-value=8.3e-06  Score=63.64  Aligned_cols=59  Identities=17%  Similarity=0.384  Sum_probs=53.6

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCC--CEEEEEcchhHHHHHHh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYG--GTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G--~~vGIVTleDIleeIvG   91 (252)
                      .++.++|.+++.++++++++.++++.|++++.+.++|+|+.|  .++|+||..|++..+..
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~   65 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   65 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence            357788988899999999999999999999999999999888  99999999999987754

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.14  E-value=6.1e-06  Score=63.52  Aligned_cols=59  Identities=15%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      .+++++|.+++.++++++++.++++.|++++.+.++|+| .|.++|+||..|++..+...
T Consensus         4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~   62 (133)
T 2ef7_A            4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG   62 (133)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC
Confidence            457888988889999999999999999999999999999 79999999999999877543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.11  E-value=4.7e-06  Score=65.71  Aligned_cols=89  Identities=20%  Similarity=0.242  Sum_probs=68.6

Q ss_pred             ccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526           32 STKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG  108 (252)
Q Consensus        32 ~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~  108 (252)
                      ..+++++|.+  ++.++++++++.++++.|++++.+..+|+|+. |.++|+||..|++..+...-  .. .-.+      
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~--~~-~v~~------   92 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN--KI-ELEE------   92 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS--CC-CGGG------
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC--Cc-cHHH------
Confidence            4568899976  78999999999999999999999999999988 89999999999998875432  11 1111      


Q ss_pred             cEEEecCceEEEeCCcChHHhHhhc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                       +.   ..-..+...+++.++.+.+
T Consensus        93 -~m---~~~~~v~~~~~l~~~~~~m  113 (148)
T 3lv9_A           93 -IL---RDIIYISENLTIDKALERI  113 (148)
T ss_dssp             -TC---BCCEEEETTSBHHHHHHHH
T ss_pred             -hc---CCCeEECCCCCHHHHHHHH
Confidence             11   1235688888888876544

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.09  E-value=6.4e-06  Score=64.33  Aligned_cols=90  Identities=14%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      .+++++|.  +++.++++++++.++++.|++++.+..+|+|+. |.++|+||..|++..+...-..... -.+       
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~-v~~-------   74 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDD-VKK-------   74 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCC-GGG-------
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcC-HHH-------
Confidence            35778886  567899999999999999999999999999987 8999999999999876521111111 111       


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                      +..  . -+.+...+++.++.+.+
T Consensus        75 ~m~--~-~~~v~~~~~l~~~~~~m   95 (136)
T 3lfr_A           75 LLR--P-ATFVPESKRLNVLLREF   95 (136)
T ss_dssp             TCB--C-CCEEETTCBHHHHHHHH
T ss_pred             HcC--C-CeEECCCCcHHHHHHHH
Confidence            111  1 45688888888876543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.06  E-value=5.3e-07  Score=87.39  Aligned_cols=83  Identities=16%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526            1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG   78 (252)
Q Consensus         1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG   78 (252)
                      +||.++.  .++++|||+.||+...   .   ...++.++|+++++++++.+++.++.+.|++++...++|||+.|.++|
T Consensus       172 vpVvd~g~~~~kLvGIvT~RD~rf~---d---~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvG  245 (556)
T 4af0_A          172 VPITETGEPDSKLLGIVTGRDVQFQ---D---AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVS  245 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCcCCEEEEEEeccccccc---c---cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEE
Confidence            5888752  4689999999998532   1   245789999999999999999999999999999999999999999999


Q ss_pred             EEcchhHHHHH
Q 041526           79 VVTLEDVVEEI   89 (252)
Q Consensus        79 IVTleDIleeI   89 (252)
                      +||..|++...
T Consensus       246 lIT~kDi~k~~  256 (556)
T 4af0_A          246 LVARSDLLKNQ  256 (556)
T ss_dssp             -----------
T ss_pred             EEEechhhhhh
Confidence            99999998653

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.05  E-value=6.6e-06  Score=58.58  Aligned_cols=49  Identities=27%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      +++|.+++++.++++.|.+++...++|+|+ |.++||||-.|++..++..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~~   50 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK   50 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence            578999999999999999999999999975 9999999999999877543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.05  E-value=8.9e-06  Score=65.48  Aligned_cols=61  Identities=23%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             ccchhhhhcC---CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           32 STKVADMAHK---PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        32 ~~~l~~~~~r---~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      ..+++++|.+   ++.++++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+...
T Consensus        23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence            4568899963   689999999999999999999999999999999999999999999987643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.05  E-value=1e-05  Score=62.67  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=52.1

Q ss_pred             chhh---hhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           34 KVAD---MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        34 ~l~~---~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++.+   +|.+++.++++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+..
T Consensus         9 ~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A            9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             chhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            4555   677889999999999999999999999999999988999999999999987754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.02  E-value=6.6e-06  Score=65.63  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=53.7

Q ss_pred             ccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           32 STKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        32 ~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ..++.++|.+  ++.++++++++.++++.|++++...++|+|+.|.++|+||..|++..+.
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   73 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   73 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhh
Confidence            3568889976  7899999999999999999999999999999999999999999998774

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.02  E-value=4.5e-06  Score=64.26  Aligned_cols=89  Identities=11%  Similarity=0.115  Sum_probs=65.1

Q ss_pred             cchhhhhcCC--ceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           33 TKVADMAHKP--AYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        33 ~~l~~~~~r~--~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      .+++++|.++  +.++++++++.++++.|++++....+|+|+. |.++|+||..|++..+...-. .. .-.++      
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~-~~-~v~~~------   74 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE-AF-SMDKV------   74 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCC-CC-CHHHH------
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCC-CC-CHHHH------
Confidence            3577888743  8899999999999999999999999999988 899999999999987643211 11 11121      


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                       .. .  -+.+...+++.++.+.+
T Consensus        75 -m~-~--~~~v~~~~~l~~a~~~m   94 (127)
T 3nqr_A           75 -LR-T--AVVVPESKRVDRMLKEF   94 (127)
T ss_dssp             -CB-C--CCEEETTCBHHHHHHHH
T ss_pred             -cC-C--CeEECCCCcHHHHHHHH
Confidence             11 1  24577888887765543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.00  E-value=6.7e-06  Score=65.09  Aligned_cols=58  Identities=12%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             cchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .++.++|.+  ++.++++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+.
T Consensus        11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   70 (157)
T 2emq_A           11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL   70 (157)
T ss_dssp             CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred             CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            457788865  7899999999999999999999999999998899999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.00  E-value=9.2e-06  Score=66.66  Aligned_cols=58  Identities=14%  Similarity=0.265  Sum_probs=53.6

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .++.++|.+++.++++++++.++++.|.+++.+.++|+|+.|.++|+||..||+..+.
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            4578899889999999999999999999999999999998899999999999998765

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.99  E-value=9.6e-06  Score=64.38  Aligned_cols=59  Identities=10%  Similarity=0.144  Sum_probs=53.8

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC--CCCEEEEEcchhHHHHHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE--YGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE--~G~~vGIVTleDIleeIv   90 (252)
                      ..+++++|.+++.++++++++.++++.|.+++.+.++|+|+  .|.++|+||..|++..+.
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence            35688999888999999999999999999999999999996  799999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.99  E-value=6.3e-06  Score=63.71  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=65.8

Q ss_pred             cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      .+++++|.  +++.++++++++.++++.|++++....+|+|+. |.++|+||..|++..+..   ... .-.+       
T Consensus         5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---~~~-~v~~-------   73 (129)
T 3jtf_A            5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE---PAL-DIRS-------   73 (129)
T ss_dssp             CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC---TTS-CGGG-------
T ss_pred             CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc---CCc-CHHH-------
Confidence            46888896  567899999999999999999999999999985 999999999999887532   111 1111       


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                      +..   .-+.+...+++.++.+.+
T Consensus        74 ~m~---~~~~v~~~~~l~~~~~~m   94 (129)
T 3jtf_A           74 LVR---PAVFIPEVKRLNVLLREF   94 (129)
T ss_dssp             GCB---CCCEEETTCBHHHHHHHH
T ss_pred             HhC---CCeEeCCCCcHHHHHHHH
Confidence            111   135688888888876554

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.96  E-value=1.4e-05  Score=61.80  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=50.8

Q ss_pred             chhhhhc---CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           34 KVADMAH---KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        34 ~l~~~~~---r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +++++|.   +++.++++++++.++++.|++++.+.++|+| .|.++|+||..|++..+.
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~   65 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSY   65 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGG
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHH
Confidence            5778887   7889999999999999999999999999998 799999999999997554

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.96  E-value=9.7e-06  Score=63.29  Aligned_cols=56  Identities=20%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             cchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526           33 TKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        33 ~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      .+++++|.+  ++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++..
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~   62 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL   62 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence            457788866  68999999999999999999999999999999999999999999854

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.95  E-value=9.2e-06  Score=65.49  Aligned_cols=54  Identities=28%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             chhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           34 KVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        34 ~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +++++|.+  ++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++.
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~   60 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA   60 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTC
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHh
Confidence            57788866  6899999999999999999999999999999999999999999985

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.89  E-value=2.4e-05  Score=63.43  Aligned_cols=60  Identities=23%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             ccchhhhhcCC----ceec--CCCCcHHHHHHHHHHcCCceEEEe--cCCCCEEEEEcchhHHHHHHh
Q 041526           32 STKVADMAHKP----AYFV--PDSMSVWNLLREFRIRKVHMAVVL--NEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        32 ~~~l~~~~~r~----~~~V--pe~~~l~~lL~~mr~~~~~~AiVV--DE~G~~vGIVTleDIleeIvG   91 (252)
                      ..+++++|.+.    +.++  ++++++.++++.|.+++.+.++|+  |+.|.++|+||..|++..+..
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            35688899665    6888  999999999999999999999999  789999999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.89  E-value=9.1e-06  Score=62.74  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      .+++++|.  .++.++++++++.++++.|++++.+..+|+|+. |.++|+||..|++..+...-. .. .-.++      
T Consensus         6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~-~~-~v~~~------   77 (130)
T 3i8n_A            6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSG-QK-QLGAV------   77 (130)
T ss_dssp             -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTT-TS-BHHHH------
T ss_pred             CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCC-cC-CHHHH------
Confidence            45778886  334589999999999999999999999999987 999999999999998754321 11 11221      


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                      + .   .-+.+...+++.++.+.+
T Consensus        78 m-~---~~~~v~~~~~l~~~~~~m   97 (130)
T 3i8n_A           78 M-R---PIQVVLNNTALPKVFDQM   97 (130)
T ss_dssp             S-E---ECCEEETTSCHHHHHHHH
T ss_pred             h-c---CCcCcCCCCcHHHHHHHH
Confidence            1 1   134688888888876544

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.88  E-value=1.4e-05  Score=65.05  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=81.8

Q ss_pred             ccchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526           32 STKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG  108 (252)
Q Consensus        32 ~~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~  108 (252)
                      ..+++++|.  +++.++++++++.++++.|++++...++|+|+. |.++|+||..|++..+...-  .. .-.+      
T Consensus        41 ~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~--~~-~v~~------  111 (172)
T 3lhh_A           41 ERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE--RL-ELVD------  111 (172)
T ss_dssp             --CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC--CC-CGGG------
T ss_pred             CCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC--cc-cHHH------
Confidence            346788997  678899999999999999999999999999988 99999999999999875321  11 1111      


Q ss_pred             cEEEecCceEEEeCCcChHHhHhhc---CCC-CC--CC-C---ccCCHHHHHHHHhCCCCCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDL---NIK-MP--EG-H---QYETVSGFVCEAFGYIPRT  160 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~l---gi~-l~--~~-~---~~~TLaGlil~~lg~iP~~  160 (252)
                       +.   ..-+.+...+++.++.+.+   ++. +|  ++ +   ...|...++-..++.+...
T Consensus       112 -im---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de  169 (172)
T 3lhh_A          112 -LV---KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQE  169 (172)
T ss_dssp             -GC---BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred             -Hh---cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCccc
Confidence             11   2335788889988876544   333 22  21 1   2367888887777776543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.86  E-value=3.5e-05  Score=74.22  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             ccchhhhhcCCceecCCC-CcHHHHHHHHHHcCCceEEEec-CCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           32 STKVADMAHKPAYFVPDS-MSVWNLLREFRIRKVHMAVVLN-EYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~-~~l~~lL~~mr~~~~~~AiVVD-E~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      ..++.++|.+++.+++++ +++.++++.|++++....+|+| +.|.++|+||..||+..+...-......-.+       
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~-------  455 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIK-------  455 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGG-------
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHH-------
Confidence            456899999999999999 9999999999999999999999 7899999999999999887532211111111       


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                      +..  ..-..++..+++.++.+.+
T Consensus       456 im~--~~~~~v~~~~~l~~a~~~m  477 (527)
T 3pc3_A          456 ALN--KRVIRLNESEILGKLARVL  477 (527)
T ss_dssp             GEE--TTCCEEETTSBHHHHHHHH
T ss_pred             Hhc--CCCeEECCCCcHHHHHHHH
Confidence            111  1234566667777666554

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.86  E-value=2.2e-05  Score=62.50  Aligned_cols=59  Identities=10%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCce-EEEecCCCCEEEEEcchhHHHHHHh
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHM-AVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~-AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ..+++++|.+++.++++++++.++++.|.+++.+. ++|+|+. .++|+||..|++..+..
T Consensus        15 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~   74 (157)
T 1o50_A           15 VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGF   74 (157)
T ss_dssp             HHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHH
T ss_pred             cccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhh
Confidence            34678899889999999999999999999999999 9999987 99999999999988653

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.84  E-value=1.9e-05  Score=61.28  Aligned_cols=113  Identities=15%  Similarity=0.112  Sum_probs=74.1

Q ss_pred             chhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecC-CCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccE
Q 041526           34 KVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE-YGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYI  110 (252)
Q Consensus        34 ~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE-~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i  110 (252)
                      +++++|.  +++.++++++++.++++.|++++.+..+|+|+ .|.++|+||..|++..+...-  ... ...+.    .+
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~--~~~-~~~v~----~~   75 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK--EFT-KEIML----RA   75 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS--CCC-HHHHH----HH
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC--ccc-hhhHH----Hh
Confidence            4677884  35789999999999999999999999999965 689999999999998875321  011 11111    01


Q ss_pred             EEecCceEEEeCCcChHHhHhhc---CCC-CC---CCC---ccCCHHHHHHHHhCC
Q 041526          111 VMRAEGIYDVDANTSIDQLSEDL---NIK-MP---EGH---QYETVSGFVCEAFGY  156 (252)
Q Consensus       111 ~~~~dg~~~v~G~~~L~dl~~~l---gi~-l~---~~~---~~~TLaGlil~~lg~  156 (252)
                      .   ..-+.++..+++.++.+.+   ++. +|   +++   +..|...++-..+|.
T Consensus        76 m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           76 A---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             S---BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             c---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence            1   1235688888888875544   332 22   111   124666666555553

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.83  E-value=2.3e-05  Score=63.34  Aligned_cols=58  Identities=12%  Similarity=0.055  Sum_probs=50.6

Q ss_pred             chhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           34 KVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        34 ~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      .+.++|.  ..+.+|+++.++.+++..|.+++....+|+|+.|.++|+||..|++..+..
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~   75 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQME   75 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHH
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhh
Confidence            3556774  467899999999999999999999999999999999999999999988764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.82  E-value=1.6e-05  Score=63.13  Aligned_cols=114  Identities=14%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             cchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEe-cC-CCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526           33 TKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVL-NE-YGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG  108 (252)
Q Consensus        33 ~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV-DE-~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~  108 (252)
                      .+++++|.+  ++.++++++++.++++.|++++.+.++|+ |+ .|.++|+||..|++..+...-  .. .-.+      
T Consensus        20 ~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~--~~-~v~~------   90 (153)
T 3oco_A           20 KVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD--KA-KIST------   90 (153)
T ss_dssp             CBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT--TS-BGGG------
T ss_pred             CEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC--CC-cHHH------
Confidence            468899964  78999999999999999999999999999 65 489999999999998876432  11 1111      


Q ss_pred             cEEEecCceEEEeCCcChHHhHhhc---CCC-CC--CC-C---ccCCHHHHHHHHhCCCCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDL---NIK-MP--EG-H---QYETVSGFVCEAFGYIPR  159 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~l---gi~-l~--~~-~---~~~TLaGlil~~lg~iP~  159 (252)
                       +.   ..-..+...+++.++.+.+   ++. +|  .+ +   +..|...++-..+|.+..
T Consensus        91 -~m---~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d  147 (153)
T 3oco_A           91 -IM---RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD  147 (153)
T ss_dssp             -TC---BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred             -Hh---CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence             11   1345788899998876554   332 22  21 1   236888888888876644

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.80  E-value=6.1e-05  Score=59.67  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=49.4

Q ss_pred             chhhhhc------CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           34 KVADMAH------KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        34 ~l~~~~~------r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      +++++|.      +++.++++++++.++++.|++++.+.++|+| .|.++|+||..|++..+..
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~   70 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVL   70 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGG
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHh
Confidence            4777776      4568999999999999999999988888854 7999999999999988754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.80  E-value=2e-05  Score=62.99  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=65.2

Q ss_pred             cchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCC-CEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           33 TKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYG-GTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        33 ~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G-~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      .+++++|.+  ++.++++++++.++++.|++++....+|+|+.| .++|+||..|++..+...  ... .-.++      
T Consensus        38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~--~~~-~v~~i------  108 (156)
T 3oi8_A           38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP--EQF-HLKSI------  108 (156)
T ss_dssp             CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG--GGC-CHHHH------
T ss_pred             CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC--Ccc-cHHHH------
Confidence            468889964  688999999999999999999999999999875 999999999998875432  111 11111      


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l  133 (252)
                       ..  . -+.+...+++.++.+.+
T Consensus       109 -m~--~-~~~v~~~~~l~~a~~~m  128 (156)
T 3oi8_A          109 -LR--P-AVFVPEGKSLTALLKEF  128 (156)
T ss_dssp             -CB--C-CCEEETTSBHHHHHHHH
T ss_pred             -cC--C-CEEECCCCCHHHHHHHH
Confidence             11  1 35677888887766544

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.77  E-value=3.8e-05  Score=63.08  Aligned_cols=117  Identities=14%  Similarity=0.083  Sum_probs=84.8

Q ss_pred             cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhccc
Q 041526           33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGY  109 (252)
Q Consensus        33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~  109 (252)
                      .++.++|.  +++.++++++++.++++.|++++....+|+|+. |.++|+||..|++..+...-  ... -. .      
T Consensus        36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~--~~~-v~-~------  105 (173)
T 3ocm_A           36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG--RVR-RN-R------  105 (173)
T ss_dssp             SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS--SCC-GG-G------
T ss_pred             CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC--cch-hH-h------
Confidence            45788885  457899999999999999999999999999886 89999999999999875331  111 00 1      


Q ss_pred             EEEecCceEEEeCCcChHHhHhhc---CCC-CC---CCC---ccCCHHHHHHHHhCCCCCCCcE
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDL---NIK-MP---EGH---QYETVSGFVCEAFGYIPRTGES  163 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~l---gi~-l~---~~~---~~~TLaGlil~~lg~iP~~Gd~  163 (252)
                          ...-+.+...+++.++.+.+   ++. +|   +.+   +..|...++-..+|.+....+.
T Consensus       106 ----~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A          106 ----LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             ----SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             ----cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcccc
Confidence                11235688899998876544   333 22   222   2468899888888887765553

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.74  E-value=5.9e-05  Score=63.79  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=50.7

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHc---CCceEEEecCCCCEEEEEcchhHHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIR---KVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~---~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ..++.++|.+++.++++++++.++++.|++.   +.+.++|+|+.|.++|+||..|++.
T Consensus        53 ~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~  111 (205)
T 3kxr_A           53 ENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK  111 (205)
T ss_dssp             TTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTT
T ss_pred             cchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHh
Confidence            3468899988999999999999999999996   6788899999999999999999874

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.68  E-value=5.7e-05  Score=66.40  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC--CCEEEEEcchhHHHHHHhhhc
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY--GGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~--G~~vGIVTleDIleeIvGei~   94 (252)
                      ..++++|.+++.+|.+++++.++.+.|.+++.+..+|||+.  |.++|+||..||+..+...+.
T Consensus        13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~   76 (250)
T 2d4z_A           13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRIS   76 (250)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhh
Confidence            45789999999999999999999999999999999999874  679999999999998866553

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.54  E-value=0.00011  Score=61.97  Aligned_cols=57  Identities=25%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI   89 (252)
                      .+..++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|++..+
T Consensus        13 ~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~   69 (213)
T 1vr9_A           13 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD   69 (213)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC
T ss_pred             cCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc
Confidence            456788989999999999999999999999999999999889999999999997543

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.48  E-value=0.00014  Score=64.38  Aligned_cols=56  Identities=13%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHc-----CCceEEEecCCCCEEEEEcchhHHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIR-----KVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~-----~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ..++.++|.+++.++++++++.++++.|+++     +.+.++|+|+.|.++|+||..|++.
T Consensus       136 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~  196 (286)
T 2oux_A          136 DETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV  196 (286)
T ss_dssp             TTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT
T ss_pred             hHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHc
Confidence            4568899988999999999999999999997     6777999999999999999999975

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.33  E-value=0.00037  Score=61.16  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHc-----CCceEEEecCCCCEEEEEcchhHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIR-----KVHMAVVLNEYGGTVGVVTLEDVVEE   88 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~-----~~~~AiVVDE~G~~vGIVTleDIlee   88 (252)
                      .++.++|.+++.++++++++.++++.|++.     +...++|+|+.|.++|+||..|++..
T Consensus       135 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  195 (278)
T 2yvy_A          135 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  195 (278)
T ss_dssp             TBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS
T ss_pred             chHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            467889988899999999999999999987     67888899999999999999999853

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.81  E-value=0.00035  Score=67.13  Aligned_cols=51  Identities=16%  Similarity=0.085  Sum_probs=45.9

Q ss_pred             hhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHH
Q 041526           36 ADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVV   86 (252)
Q Consensus        36 ~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIl   86 (252)
                      .++|.+++.++++++++.++++.|++++....+|+|+.|.++|+||..|++
T Consensus        92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR  142 (496)
T ss_dssp             CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT
T ss_pred             ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh
Confidence            345778899999999999999999999999999999999999999999986

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=96.68  E-value=0.00063  Score=67.01  Aligned_cols=61  Identities=8%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             ccchhhhhc--CCceecCCCCcHHHHHHHHH-HcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           32 STKVADMAH--KPAYFVPDSMSVWNLLREFR-IRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        32 ~~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr-~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      ..+++++|.  +++.++++++++.++++.|+ +++.+..+|+|+.|.++|+||..|++..+...
T Consensus       452 ~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~  515 (632)
T 3org_A          452 EMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHV  515 (632)
T ss_dssp             TSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC
T ss_pred             cCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHH
Confidence            456899998  88999999999999999999 78899999999999999999999999876443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=96.58  E-value=0.0014  Score=46.20  Aligned_cols=44  Identities=32%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHH-cCCcccccchhhhhcCCceec
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQ-KGELLESTKVADMAHKPAYFV   46 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~-~~~~~~~~~l~~~~~r~~~~V   46 (252)
                      +||.++  ++++|||+.+||++++. .+......+++++|.+++.+|
T Consensus        26 ~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           26 AVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             EEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            589875  68999999999986653 333333457899998887664

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=96.51  E-value=0.0039  Score=59.30  Aligned_cols=56  Identities=23%  Similarity=0.327  Sum_probs=49.5

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHc-----CCceEEEecCCCCEEEEEcchhHHH
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIR-----KVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~-----~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      ..++.++|.+++.++++++++.++++.|++.     +....+|+|+.|.++|+||..|++.
T Consensus       154 ~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~  214 (473)
T 2zy9_A          154 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV  214 (473)
T ss_dssp             TTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHH
T ss_pred             CCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhc
Confidence            3457789988899999999999999999986     4577889998899999999999985

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=96.23  E-value=0.0077  Score=57.95  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             hhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC--CCCEEEEEcchhHHH
Q 041526           38 MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE--YGGTVGVVTLEDVVE   87 (252)
Q Consensus        38 ~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE--~G~~vGIVTleDIle   87 (252)
                      .|.+++.++++++++.++++.|++++....+|+|+  .|.++|+||..|+..
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~  169 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF  169 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh
Confidence            45677899999999999999999999999999998  899999999999863

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.02  E-value=0.001  Score=63.31  Aligned_cols=53  Identities=23%  Similarity=0.140  Sum_probs=0.4

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +.++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|++.
T Consensus        97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A           97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF  149 (494)
T ss_dssp             C----------------------------------------------------
T ss_pred             HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence            35667788999999999999999999999999999998899999999999975

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.92  E-value=0.011  Score=55.92  Aligned_cols=53  Identities=11%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec--CCCCEEEEEcchhHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN--EYGGTVGVVTLEDVVE   87 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD--E~G~~vGIVTleDIle   87 (252)
                      +.++|..++.+++++.++.++++.|++++....+|+|  +.|.++|+||..|++.
T Consensus        92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            4567878889999999999999999999999999999  7899999999999985

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.76  E-value=0.00062  Score=65.24  Aligned_cols=51  Identities=24%  Similarity=0.167  Sum_probs=1.3

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVV   86 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIl   86 (252)
                      +.++|..++.++++++++.++++.|++++....+|+| .|.++|+||..|+.
T Consensus        90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~  140 (490)
T 4avf_A           90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLR  140 (490)
T ss_dssp             CCC-------------------------------------------------
T ss_pred             cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhh
Confidence            3456778889999999999999999999999999999 79999999999996

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.13  E-value=0.0042  Score=59.49  Aligned_cols=53  Identities=15%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVE   87 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIle   87 (252)
                      +.++|.+++.++++++++.++++.|++++.+..+|+|+   .|.++|+||..|+..
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~  165 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF  165 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh
Confidence            44667788999999999999999999999999999998   589999999999876

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=94.51  E-value=0.0065  Score=58.24  Aligned_cols=49  Identities=16%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             hcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC---CCEEEEEcchhHHH
Q 041526           39 AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GGTVGVVTLEDVVE   87 (252)
Q Consensus        39 ~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~~vGIVTleDIle   87 (252)
                      |.+++.++++++++.++++.|++++....+|+|+.   |.++|+||..|++.
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~  154 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI  154 (503)
T ss_dssp             ----------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh
Confidence            66788999999999999999999999999999987   89999999999985

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=93.41  E-value=0.022  Score=54.21  Aligned_cols=50  Identities=14%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             hhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           37 DMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        37 ~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +.|..++.+++++.++.++++.|++++....+|+|+ +.++|+||..|++.
T Consensus        97 ~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~  146 (486)
T 2cu0_A           97 RLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA  146 (486)
T ss_dssp             ---------------------------------------------------
T ss_pred             hccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc
Confidence            456678899999999999999999998888899988 99999999999874

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=92.71  E-value=0.042  Score=53.34  Aligned_cols=48  Identities=15%  Similarity=0.012  Sum_probs=0.0

Q ss_pred             hcCCceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHH
Q 041526           39 AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVV   86 (252)
Q Consensus        39 ~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIl   86 (252)
                      +...|+++.++.++.+++..|++.+..-.+|+|+   .|.++||||-.|+-
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r  194 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ  194 (556)
T ss_dssp             ---------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc
Confidence            4467899999999999999999999988999975   57899999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d2p3ha1	98	d.145.1.4 (A:5-102) Uncharacterized protein Cgl119	1e-11
d2oaia1	87	d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidi	1e-10
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	5e-09
d2plsa1	84	d.145.1.4 (A:345-428) Hypothetical protein CT0541	7e-09
d2o1ra1	78	d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Ha	9e-09
d3deda1	87	d.145.1.4 (A:341-427) Probable hemolysin CV0231 {C	9e-09
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	9e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-08
d2p4pa1	82	d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Ha	2e-08
d2r2za1	84	d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Ente	3e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-08
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	5e-08
d2p13a1	85	d.145.1.4 (A:431-515) Uncharacterized protein NE22	6e-08
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	7e-08
d2rk5a1	84	d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Str	1e-07
d2plia1	84	d.145.1.4 (A:5-88) Uncharacterized protein NMB0537	3e-07
d2o3ga1	76	d.145.1.4 (A:180-255) Putative protein NMB1485 {Ne	3e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	5e-07
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	6e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	8e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	2e-06
d2nqwa1	87	d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Po	2e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-05
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	1e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	4e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	5e-05
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	5e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	9e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	4e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.001

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]} Length = 98

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 18/107 (16%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVE 169
           I   +   + +D +T +D++   +  ++PEG  YET+SG + +    + +TG+ I++ ++
Sbjct: 3   ITETSPDKWLIDGDTPLDEVERAIGYELPEGD-YETISGLLFDHANALLKTGDVIEIPLD 61

Query: 170 KENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216
            E ++  +  +             +I ++ +L         +    +
Sbjct: 62  FEPEDYLNNTSPT----------QRILRITVLEVERNVPVKLALALL 98

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]} Length = 87

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

 Score = 54.3 bits (131), Expect = 1e-10
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 29/111 (26%)

Query: 109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMP--EGHQYETVSGFVCEAFGYIPRTGESIKV 166
            +V R +G + +D    I++L E L  ++P  E + Y T++G     FG IP  GE    
Sbjct: 4   LMVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHVGEYFD- 62

Query: 167 VVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERIN 217
                                        +++EI+  +  ++  +  +R+N
Sbjct: 63  --------------------------WAGWRIEIVDLDGARIDKLLLQRLN 87

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.5 bits (122), Expect = 5e-09
 Identities = 10/72 (13%), Positives = 27/72 (37%)

Query: 31  ESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90
           E+           +    +  +  +    +  +VH   V++E     G+++L D++  I+
Sbjct: 74  EALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII 133

Query: 91  GEIFDESDSKEE 102
            +        E+
Sbjct: 134 YDKTTTPGVPEQ 145

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

 Score = 49.3 bits (118), Expect = 7e-09
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 30/110 (27%)

Query: 111 VMRAEGIYDVDANTSIDQLSEDLNIKMP---EGHQYETVSGFVCEAFGYIPRTGESIKVV 167
           V R +G + +D   ++ +L + L ++     E   Y T+SG +    G +P+TG+     
Sbjct: 2   VQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITF-- 59

Query: 168 VEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERIN 217
                                     + ++LE++  +++++  V   +I+
Sbjct: 60  -------------------------WENWRLEVIDMDSKRIDKVLATKID 84

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]} Length = 78

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.8 bits (117), Expect = 9e-09
 Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 28/106 (26%)

Query: 111 VMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEK 170
           + +++G   +D + ++  L++  N ++       T +G + E    IP  G   +     
Sbjct: 1   IQQSDGSMIIDGSANLRDLNKMFNWELDTE-DARTFNGLILEHLEEIPDEGTICE----- 54

Query: 171 ENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216
                                      + IL      +   +  ++
Sbjct: 55  ----------------------IDGLLITILEVGDNMIKQAKVVKL 78

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]} Length = 87

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

 Score = 49.3 bits (118), Expect = 9e-09
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMP----EGHQYETVSGFVCEAFGYIPRTGESIK 165
           IV R +G + VD   S+D+  E   ++ P     G    T++G +    G +P   +  +
Sbjct: 3   IVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFE 62

Query: 166 V 166
            
Sbjct: 63  W 63

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.5 bits (122), Expect = 9e-09
 Identities = 8/73 (10%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 33  TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT-----VGVVTLEDVVE 87
            +          +V    S+ +        +     +++  G T     V V+T   +++
Sbjct: 107 ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK 166

Query: 88  EIVGEIFDESDSK 100
            I     + +  +
Sbjct: 167 FISMNCKETAMLR 179

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-------LESTKVADMAHKPAYFVPDSMSVW 53
           VP+ ++    ++ +  A D+L  ++ G          E+        +  Y    +  + 
Sbjct: 43  VPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLS 101

Query: 54  NLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90
            ++   R  +VH   V+++ G  VGV+TL D+++ I+
Sbjct: 102 TIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 138

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]} Length = 82

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 28/109 (25%)

Query: 111 VMRAEGIYDVDANTSIDQLSEDLNIKM-PEGHQYETVSGFVCEAFGYIPRTGESIKVVVE 169
           + R E  + +D  T ++ +   LNI   P    YET+ GF+      IP+  + +     
Sbjct: 1   MRRNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRKIPKKTDFVL---- 56

Query: 170 KENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINN 218
                                  +  YK EI+     ++  +      +
Sbjct: 57  -----------------------YDKYKFEIIDTENFRIDQLMVSFRKD 82

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVV 168
                A+  Y V     ID+ +E     +      +T++G++  A G IP  GE     V
Sbjct: 2   LYTQVADNEYLVQGRMLIDEFNEVFETDLHMSD-VDTMAGYLITALGTIPDEGEKPSFEV 60

Query: 169 E 169
            
Sbjct: 61  G 61

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 10/60 (16%), Positives = 28/60 (46%)

Query: 31  ESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90
           ++ +      +         ++  ++      +VH  VV++E+    G+V+L D+++ +V
Sbjct: 82  KALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 141

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 15/109 (13%), Positives = 45/109 (41%), Gaps = 16/109 (14%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAH---------------KPAYF 45
            P+++ +  + VG+    D ++ + +       ++ ++                 KP   
Sbjct: 49  APLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC 108

Query: 46  VPDSMSVWNLLREFRIRKVHMAVVL-NEYGGTVGVVTLEDVVEEIVGEI 93
           +  + S+++ +      K+H   V+  E G T+ ++T + +++ +   I
Sbjct: 109 ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 157

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQ-YETVSGFVCEAFGYIPRTGESIKV 166
              +A+G + +D   SI + S  L   + +  + Y T+ G++   FGYIP  GE I V
Sbjct: 5   AEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITV 62

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 21  LDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80
             + Q+ + +          +  + + +  S+      F +  +  A V    G  VGVV
Sbjct: 91  YRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVT-SMGKLVGVV 149

Query: 81  TLEDVVEEIVG 91
            L ++   I G
Sbjct: 150 ALAEIQAAIEG 160

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 113 RAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVE 169
            A+  Y V    +++  +E     +   +  +T++GF     G IP   E     VE
Sbjct: 3   IADNTYIVLGTMTLNDFNEYFETDLESDN-VDTIAGFYLTGVGTIPSQEEKEHFEVE 58

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 28/107 (26%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVE 169
           I   +   + + A T I+ ++     +       +T+ G V +  G++P  GE +     
Sbjct: 5   IHAVSSERWRIHAATEIEDINTFFGTEYSSEE-ADTIGGLVIQELGHLPVRGEKVL---- 59

Query: 170 KENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216
                                      +  +   + R++  +   R+
Sbjct: 60  -----------------------IGGLQFTVARADNRRLHTLMATRV 83

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]} Length = 76

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 28/100 (28%)

Query: 118 YDVDANTSIDQLSEDLNIKMPEGHQ-YETVSGFVCEAFGYIPRTGESIKVVVEKENQEEN 176
             V+      +L+  LN+   E    + TV+G + E    IP  G+              
Sbjct: 3   LTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFA------------ 50

Query: 177 DEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216
                              ++ E++    +++  V+  ++
Sbjct: 51  ---------------DFHGWRFEVVEKEGQRIERVKITKL 75

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 28  ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87
               + K+ ++     + V D   +  ++  FR   +   +V    G  +G++T +DV++
Sbjct: 95  YTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT-HNGRLLGIITKKDVLK 153

Query: 88  EIVGEIFDESDS 99
            I      + DS
Sbjct: 154 HIAQMANQDPDS 165

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.9 bits (105), Expect = 6e-07
 Identities = 9/58 (15%), Positives = 24/58 (41%)

Query: 36  ADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
           A +  +    V ++ ++    +          VV++  G  VG++T+ D++     + 
Sbjct: 63  AMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS 120

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 45.0 bits (105), Expect = 8e-07
 Identities = 11/70 (15%), Positives = 29/70 (41%)

Query: 32  STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91
              V D+       + +  SV     E  ++++   ++LN+     G++T  D++  +  
Sbjct: 72  GKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 131

Query: 92  EIFDESDSKE 101
            +  E   ++
Sbjct: 132 ILVMEKFKEK 141

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 23  YVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTL 82
                + L +   +++   P  +V     +   L+      +    V++E G  VG +  
Sbjct: 74  IRSSMKRLIAKNASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS 132

Query: 83  EDVVEEIVGE 92
            +++  +   
Sbjct: 133 LEILLALWKG 142

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]} Length = 87

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 110 IVMRAEGIYDVDANTSIDQLSEDLNIKM----PEGHQYETVSGFVCEAFGYIPRTGESIK 165
             +  +G Y  +  TS+  +   L++        G + +T+SG   E    +P  G++  
Sbjct: 3   FKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAV 62

Query: 166 V 166
            
Sbjct: 63  Y 63

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 5e-06
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 38  MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
               P +FV +  ++ + L  F   +     V++E     G V+L D +E ++  +
Sbjct: 65  KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 120

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 12/77 (15%), Positives = 31/77 (40%)

Query: 14  IAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY 73
           I  +   L + +    L +  VA++  +        M+V  +  +     +    V+   
Sbjct: 80  ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE 139

Query: 74  GGTVGVVTLEDVVEEIV 90
           G  +G++   D+++ +V
Sbjct: 140 GDLIGLIRDFDLLKVLV 156

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           V          V +    D+L  V +    +    A         V D+  V     + R
Sbjct: 36  VLTARDNPKRPVAVVSERDILRAVAQRL--DLDGPAMPIANSPITVLDTDPVHVAAEKMR 93

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90
              +   VV+N+ G  VGV+++ D+  E  
Sbjct: 94  RHNIRHVVVVNKNGELVGVLSIRDLCFERA 123

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 33  TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
           TK  +        + +   +   L   R   +    V+++ G   G++++ D+   I  +
Sbjct: 67  TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID-D 125

Query: 93  IF 94
           +F
Sbjct: 126 MF 127

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 12/67 (17%), Positives = 24/67 (35%)

Query: 38  MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDES 97
           +  KP   V     V ++        +    V+++ G  VG+VTL D+   +      + 
Sbjct: 74  VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDI 133

Query: 98  DSKEEIQ 104
                 +
Sbjct: 134 LLSHRTK 140

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 2   PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI 61
           P+          +     ++  +  G    +    ++A    Y+V  + S+  +L     
Sbjct: 36  PICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEE 95

Query: 62  RKVHMAVVLNEYGGTVGVVTLEDVVEEI 89
            +V    V++E    VG+VT  D+   +
Sbjct: 96  HQVRRVPVISE-HRLVGIVTEADIARHL 122

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 9/72 (12%), Positives = 21/72 (29%)

Query: 18  MDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTV 77
                       + +T + D        V ++   +  +     R      V++     V
Sbjct: 59  CKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPV 118

Query: 78  GVVTLEDVVEEI 89
           G+VT  + +   
Sbjct: 119 GIVTEREFLLLY 130

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 1   VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR 60
           +    +    +VGI      +D++++ E     +      +     P  +++       +
Sbjct: 32  ITDTGRMGSRLVGIIS-SRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQ 90

Query: 61  IRKVHMAVVLNEYGGTVGVVTLEDVV 86
             K     ++NE    V ++   D+ 
Sbjct: 91  RSKKGKLPIVNENDELVAIIARTDLK 116

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.0 bits (90), Expect = 9e-05
 Identities = 14/83 (16%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 9   DNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMA 67
           + +VGI    D         + ++ T+V ++  +   +V  + +  + +      +V   
Sbjct: 45  EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHL 104

Query: 68  VVLNEYGGTVGVVTLEDVVEEIV 90
            VL++ G  +G++++ D+V++ +
Sbjct: 105 PVLDD-GKVIGLLSIGDLVKDAI 126

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 3   VFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIR 62
           V      N+VG     D++  V    L     V  +  +       +  +  +LR+    
Sbjct: 40  VVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEH 99

Query: 63  KVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93
           ++   ++  E G  VG+ TL D++E     +
Sbjct: 100 RIKHILI-EEEGKIVGIFTLSDLLEASRRRL 129

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 5   EQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKV 64
                 +VGI    D+           +     M  +          +    R     ++
Sbjct: 36  TLANRKLVGIITNRDMRFISD----YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRI 91

Query: 65  HMAVVLNEYGGTVGVVTLEDVVEEI 89
               +++  G   G++T++D+ + I
Sbjct: 92  EKLPLVDNSGRLSGLITIKDIEKVI 116

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 33  TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92
           T +AD+ ++    V       ++ +  R        V +     +G+VT++D+++ I   
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID-- 122

Query: 93  IFDESDS 99
             DE+ S
Sbjct: 123 --DEAAS 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	99.85
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	99.85
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	99.84
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	99.84
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	99.84
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	99.83
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	99.83
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	99.82
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	99.81
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	99.81
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	99.79
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	99.76
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.42
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.35
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.34
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.34
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.33
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.32
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.29
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.28
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.27
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.27
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.26
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.26
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.24
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.24
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.24
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.24
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.23
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.22
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.21
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.2
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.19
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.15
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.13
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.11
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.1
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.09
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.56
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.46
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.38
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.34
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.3
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.27
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.24
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.23
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.16
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.11
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.1
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.07
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.06
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.06
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.96
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.94
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.91
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.9
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.89
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	97.7
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.61
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.5
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.45
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.21
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	96.96
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	96.79

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=2.3e-21  Score=141.69  Aligned_cols=77  Identities=16%  Similarity=0.314  Sum_probs=72.5

Q ss_pred             EecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcccccc
Q 041526          112 MRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKE  191 (252)
Q Consensus       112 ~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (252)
                      +..||+|+++|+++|+||++.||++||++ +|+|||||++++||++|++|+++.+                         
T Consensus         2 ~~~Dg~~~v~G~~~l~dl~~~l~~~l~~~-~~~Ti~G~v~~~lg~iP~~Ge~v~~-------------------------   55 (78)
T d2o1ra1           2 QQSDGSMIIDGSANLRDLNKMFNWELDTE-DARTFNGLILEHLEEIPDEGTICEI-------------------------   55 (78)
T ss_dssp             ECTTSCEEEETTCBHHHHHHHHCCCCCCS-SCSBHHHHHHHHCSSCCCTTCEEEE-------------------------
T ss_pred             EecCCEEEEEeeCCHHHHHHHHCCCCCCc-cchHHHHHHHHHhCcCCCCCCEEEE-------------------------
Confidence            35789999999999999999999999975 7999999999999999999999999                         


Q ss_pred             ccceEEEEEEEecCCeeeEEEEEEc
Q 041526          192 KHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       192 ~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                        ++|+|+|++|+++||.+|+|+++
T Consensus        56 --~~~~f~V~~~~~~rI~~V~i~kl   78 (78)
T d2o1ra1          56 --DGLLITILEVGDNMIKQAKVVKL   78 (78)
T ss_dssp             --TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             --CCEEEEEEEccCCeEEEEEEEEC
Confidence              58999999999999999999874

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.85  E-value=2.7e-21  Score=144.01  Aligned_cols=81  Identities=22%  Similarity=0.422  Sum_probs=74.6

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCC----CCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCC
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMP----EGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGS  184 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~----~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~  184 (252)
                      .|.++.+|+|+++|+++|+||++.||+++|    ++++|+|||||++++||++|+.|+++.+                  
T Consensus         2 eIv~~~dg~~~v~G~~~l~dl~~~~~~~l~~~~~~~~~~~TlgG~il~~lg~iP~~Ge~v~~------------------   63 (87)
T d3deda1           2 EIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEW------------------   63 (87)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCTTCEEEE------------------
T ss_pred             CcEEecCCeEEEEeeCCHHHHHHHhCCCCCCCccccccccCHHHHHHHHhCcCCCCCCEEEE------------------
Confidence            367889999999999999999999999886    3457999999999999999999999999                  


Q ss_pred             CccccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          185 DRQDSKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       185 ~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                               ++|+|+|++|+++||.+|+|++.
T Consensus        64 ---------~~~~f~V~~~d~~rI~~V~v~r~   86 (87)
T d3deda1          64 ---------NGFSFEVVDMDRTRVDKILVQRH   86 (87)
T ss_dssp             ---------TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             ---------CCEEEEEEEeeCCeEEEEEEEeC
Confidence                     58999999999999999999864

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=99.84  E-value=3.5e-21  Score=143.45  Aligned_cols=82  Identities=28%  Similarity=0.602  Sum_probs=72.4

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCC--CccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEG--HQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDR  186 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~--~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~  186 (252)
                      .+.++.+|+|+++|.++|+||++.||+++|..  .+|+|||||++++||++|++|+++.+                    
T Consensus         4 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~e~~~~~Tl~G~i~~~lg~iP~~Ge~v~~--------------------   63 (87)
T d2oaia1           4 LMVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHVGEYFDW--------------------   63 (87)
T ss_dssp             SEEECTTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCCTTCEEEE--------------------
T ss_pred             CeEEcCCCEEEEEecCCHHHHHHHHCCCCCcccccccccHHHHHHHHhCcCCCCCCEEEE--------------------
Confidence            57889999999999999999999999999742  35899999999999999999999999                    


Q ss_pred             cccccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          187 QDSKEKHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       187 ~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                             ++|+|+|++|+++||.+|+|+++.
T Consensus        64 -------~~~~f~V~~~~~~rI~~v~v~rl~   87 (87)
T d2oaia1          64 -------AGWRIEIVDLDGARIDKLLLQRLN   87 (87)
T ss_dssp             -------TTEEEEEEEEETTEEEEEEEEECC
T ss_pred             -------CCEEEEEEEeeCCeEEEEEEEECc
Confidence                   589999999999999999999863

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.84  E-value=6.4e-21  Score=141.03  Aligned_cols=80  Identities=23%  Similarity=0.460  Sum_probs=72.7

Q ss_pred             EEecCceEEEeCCcChHHhHhhcCCCCCCC---CccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcc
Q 041526          111 VMRAEGIYDVDANTSIDQLSEDLNIKMPEG---HQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQ  187 (252)
Q Consensus       111 ~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~---~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~  187 (252)
                      .++.+|+|+++|.++|+||++.||+++|.+   .+|+|||||++++||++|++|+++.+                     
T Consensus         2 v~~~dg~~~v~G~~~l~dl~~~l~~~~~~~~e~~~~~Tl~G~i~~~lg~iP~~Ge~v~~---------------------   60 (84)
T d2plsa1           2 VQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFW---------------------   60 (84)
T ss_dssp             EECTTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCTTCEEEE---------------------
T ss_pred             eEecCCeEEEEccCCHHHHHHHHCCCCCcccccccccCHHHHHHHHhCccCCCCCEEEE---------------------
Confidence            356899999999999999999999987632   35899999999999999999999999                     


Q ss_pred             ccccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          188 DSKEKHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       188 ~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                            ++|+|+|++|+++||.+|+|++++
T Consensus        61 ------~~~~f~V~~~~~~rI~~v~i~~le   84 (84)
T d2plsa1          61 ------ENWRLEVIDMDSKRIDKVLATKID   84 (84)
T ss_dssp             ------TTEEEEEEEEETTEEEEEEEEECC
T ss_pred             ------CCEEEEEEEeeCCeEEEEEEEECC
Confidence                  589999999999999999999763

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.84  E-value=3.3e-21  Score=142.96  Aligned_cols=80  Identities=31%  Similarity=0.505  Sum_probs=74.3

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCC-CCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPE-GHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQ  187 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~-~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~  187 (252)
                      .+.+.++|+|+++|.++|+||++.|++++|+ +++|+|||||++++||++|++|+++.+                     
T Consensus         4 ~~~~~~dg~~~v~G~~~l~dl~~~l~~~l~~e~~~~~TlgG~i~~~lg~iP~~Ge~v~~---------------------   62 (85)
T d2p13a1           4 VAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITV---------------------   62 (85)
T ss_dssp             SEEECTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCCCTTCEEEE---------------------
T ss_pred             ccEEcCCCeEEEEecCCHHHHHHHHCCCCCCccccceEHHHHHHHHhCcCCCCCCEEEE---------------------
Confidence            3667899999999999999999999999873 457999999999999999999999999                     


Q ss_pred             ccccccceEEEEEEEecCCeeeEEEEEE
Q 041526          188 DSKEKHQIYKLEILAGNARKVSAVRFER  215 (252)
Q Consensus       188 ~~~~~~~~~~~~V~~~~~~ri~~V~i~~  215 (252)
                            ++|+|+|++|+++||.+|+|++
T Consensus        63 ------~~~~f~V~~~~~~rI~~V~i~r   84 (85)
T d2p13a1          63 ------DGLIFEIVSVNKHNIGKVRVHR   84 (85)
T ss_dssp             ------TTEEEEECCBCSSSBCEEEEEE
T ss_pred             ------CCEEEEEEEeeCCEEEEEEEEE
Confidence                  5899999999999999999986

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=99.83  E-value=1.2e-20  Score=139.64  Aligned_cols=81  Identities=16%  Similarity=0.350  Sum_probs=76.5

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .|.+.++++|+++|.++|+||++.||++||++ +|+|||||++++||++|++|+++.+                      
T Consensus         4 ~I~~~~~~~~~v~g~~~l~dl~~~~~~~l~~~-~~~TigG~i~~~l~~iP~~g~~v~~----------------------   60 (84)
T d2plia1           4 NIHAVSSERWRIHAATEIEDINTFFGTEYSSE-EADTIGGLVIQELGHLPVRGEKVLI----------------------   60 (84)
T ss_dssp             SEEEEETTEEEEETTCBHHHHHHHHCCCCCCS-SCCBHHHHHHHHHSSCCCTTCEEEE----------------------
T ss_pred             ceEEeCCCEEEEEecCCHHHHHHHhCCCCCcc-ccHHHHHHHHHHhCccccCCcEEEE----------------------
Confidence            47889999999999999999999999999975 7999999999999999999999999                      


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                           ++|+|+|++|+++||.+|+|+++.
T Consensus        61 -----~~~~f~V~~~~~~rI~~V~i~ki~   84 (84)
T d2plia1          61 -----GGLQFTVARADNRRLHTLMATRVK   84 (84)
T ss_dssp             -----TTEEEEEEEECSSCEEEEEEEECC
T ss_pred             -----CCEEEEEEEccCCeEEEEEEEECC
Confidence                 699999999999999999999763

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=99.83  E-value=9.6e-21  Score=139.56  Aligned_cols=78  Identities=24%  Similarity=0.451  Sum_probs=71.7

Q ss_pred             ecCceEEEeCCcChHHhHhhcCCCC-CCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcccccc
Q 041526          113 RAEGIYDVDANTSIDQLSEDLNIKM-PEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKE  191 (252)
Q Consensus       113 ~~dg~~~v~G~~~L~dl~~~lgi~l-~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (252)
                      +.+|+|+++|+++|+||++.||+++ +++++|+|||||++++||++|++|+++.+                         
T Consensus         3 ~dd~~~~v~g~~~l~d~~~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~~Ge~v~~-------------------------   57 (82)
T d2p4pa1           3 RNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRKIPKKTDFVLY-------------------------   57 (82)
T ss_dssp             CCCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCTTCEEEE-------------------------
T ss_pred             EcCCEEEEEeeCCHHHHHHHhCCCCCCcccCccCHHHHHHHHhCcCCCCCCEEEE-------------------------
Confidence            4789999999999999999999985 44457999999999999999999999999                         


Q ss_pred             ccceEEEEEEEecCCeeeEEEEEEcC
Q 041526          192 KHQIYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       192 ~~~~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                        ++|+|+|++|+++||.+|+|++..
T Consensus        58 --~~~~f~V~~~~~~rI~~V~i~~~~   81 (82)
T d2p4pa1          58 --DKYKFEIIDTENFRIDQLMVSFRK   81 (82)
T ss_dssp             --TTEEEEEEEEETTEEEEEEEEECC
T ss_pred             --CCEEEEEEEeecCeEEEEEEEECC
Confidence              589999999999999999998754

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=99.82  E-value=1.5e-20  Score=136.66  Aligned_cols=75  Identities=19%  Similarity=0.426  Sum_probs=69.7

Q ss_pred             ceEEEeCCcChHHhHhhcCCCCCCCC-ccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccccccccc
Q 041526          116 GIYDVDANTSIDQLSEDLNIKMPEGH-QYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQ  194 (252)
Q Consensus       116 g~~~v~G~~~L~dl~~~lgi~l~~~~-~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (252)
                      ++|+++|+++|+||++.||+++|+++ +|+|||||++++||++|++|+++.+                           +
T Consensus         1 ~s~~vdG~~~i~dl~~~l~~~~~~~~~~~~Ti~G~vl~~lg~iP~~Ge~v~~---------------------------~   53 (76)
T d2o3ga1           1 ESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADF---------------------------H   53 (76)
T ss_dssp             CCSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTCEEEE---------------------------T
T ss_pred             CeEEEEcCCCHHHHHHHHCcCCCccccccccHHHHHHHHhCcCCCCCCEEEE---------------------------C
Confidence            47999999999999999999998643 5899999999999999999999999                           5


Q ss_pred             eEEEEEEEecCCeeeEEEEEEcC
Q 041526          195 IYKLEILAGNARKVSAVRFERIN  217 (252)
Q Consensus       195 ~~~~~V~~~~~~ri~~V~i~~~~  217 (252)
                      +|+|+|++|+++||.+|+|++++
T Consensus        54 ~~~f~V~~~~~~rI~~V~v~~lP   76 (76)
T d2o3ga1          54 GWRFEVVEKEGQRIERVKITKLP   76 (76)
T ss_dssp             TEEEEEEEEETTEEEEEEEEECC
T ss_pred             CEEEEEEEeeCCeEEEEEEEECc
Confidence            99999999999999999999864

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=6.1e-20  Score=135.80  Aligned_cols=81  Identities=22%  Similarity=0.307  Sum_probs=72.6

Q ss_pred             EEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcccc
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDS  189 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~  189 (252)
                      +.+.++|+|+++|+++|+||++.||++||++ +|+|||||++++||++|++|+.+.+..                     
T Consensus         3 ~~~i~~~~~~v~G~~~l~dl~~~l~~~l~~~-~~~TigG~i~~~lg~iP~~Ge~~~i~~---------------------   60 (84)
T d2r2za1           3 YTQVADNEYLVQGRMLIDEFNEVFETDLHMS-DVDTMAGYLITALGTIPDEGEKPSFEV---------------------   60 (84)
T ss_dssp             EEEEETTEEEEETTSBHHHHHHHHTCCCCCT-TCCBHHHHHHHHHSSCCCTTCCCEEEE---------------------
T ss_pred             eEEECCCEEEEEeeCCHHHHHHHHCcCCCCc-cchhHHHHHHHHhCcCCCCCCEEEEEE---------------------
Confidence            5678999999999999999999999999974 799999999999999999999544421                     


Q ss_pred             ccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          190 KEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       190 ~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                          ++|+|+|++|+++||.+|+|+..
T Consensus        61 ----~~~~f~V~~~~~~rI~~v~v~~~   83 (84)
T d2r2za1          61 ----GNIKLTAEEMEGTRLLVLRVHFY   83 (84)
T ss_dssp             ----TTEEEEEEEEETTEEEEEEEEEC
T ss_pred             ----CCEEEEEEEccCCeEEEEEEEeC
Confidence                58999999999999999999853

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.81  E-value=1.8e-20  Score=139.47  Aligned_cols=80  Identities=16%  Similarity=0.370  Sum_probs=73.2

Q ss_pred             EEEecCceEEEeCCcChHHhHhhcCCCCCC----CCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCC
Q 041526          110 IVMRAEGIYDVDANTSIDQLSEDLNIKMPE----GHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSD  185 (252)
Q Consensus       110 i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~----~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~  185 (252)
                      +.+.++|+|+++|+++|+||++.|+++++.    +++|+|||||+++++|++|++|+++.+                   
T Consensus         3 ~~ki~d~~~~v~G~~~l~dl~~~l~~~l~~~~~~~~~~~Ti~G~i~~~lg~iP~~Ge~v~~-------------------   63 (87)
T d2nqwa1           3 FKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVY-------------------   63 (87)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHHCSCCCTTCEEEE-------------------
T ss_pred             eEEECCCEEEEEEeCCHHHHHHHhCCCcccccCcccceeeHHHHHHHHhCccccCCeEEEE-------------------
Confidence            567899999999999999999999998852    346999999999999999999999999                   


Q ss_pred             ccccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          186 RQDSKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       186 ~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                              ++|+|+|++|+++||.+|+|++.
T Consensus        64 --------~~~~f~V~~~~~~rI~~V~v~p~   86 (87)
T d2nqwa1          64 --------EPFRFQVTQMDKRRIIEIKIFPF   86 (87)
T ss_dssp             --------TTEEEEEEEECSSSEEEEEECCC
T ss_pred             --------CCEEEEEEEccCCeEEEEEEEEC
Confidence                    59999999999999999999753

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=99.79  E-value=2.7e-19  Score=131.97  Aligned_cols=82  Identities=18%  Similarity=0.253  Sum_probs=72.4

Q ss_pred             EecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcccccc
Q 041526          112 MRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKE  191 (252)
Q Consensus       112 ~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (252)
                      +.++|+|+++|.++|+||++.||++||++ +|+|||||++++||++|++|+++.++.+..                    
T Consensus         2 ki~d~~~~v~G~~~l~dl~~~l~~~l~~~-~~dTlgG~v~~~lg~iP~~Ge~~~~~~~~~--------------------   60 (84)
T d2rk5a1           2 EIADNTYIVLGTMTLNDFNEYFETDLESD-NVDTIAGFYLTGVGTIPSQEEKEHFEVESN--------------------   60 (84)
T ss_dssp             EEETTEEEEETTSBHHHHHHHHTCCCCCT-TCCBHHHHHHHHHCSCCCSSSCCEEEEEET--------------------
T ss_pred             EecCCEEEEEeeeEHHHHHHHhCCCcccc-cchhHHHHHHHHhCcCCCCCCEEEEecccc--------------------
Confidence            46799999999999999999999999874 799999999999999999999999842110                    


Q ss_pred             ccceEEEEEEEecCCeeeEEEEEE
Q 041526          192 KHQIYKLEILAGNARKVSAVRFER  215 (252)
Q Consensus       192 ~~~~~~~~V~~~~~~ri~~V~i~~  215 (252)
                       ..+|+|+|.+|+++||.+|+|..
T Consensus        61 -~~~~~~~v~~~~~~rI~~v~v~l   83 (84)
T d2rk5a1          61 -GKHLELINDKVKDGRVTKLKILV   83 (84)
T ss_dssp             -TEEEEEEEEEEETTEEEEEEEEE
T ss_pred             -cCcEEEEEEEcccCEEEEEEEEE
Confidence             13899999999999999999974

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.76  E-value=4e-18  Score=129.51  Aligned_cols=97  Identities=19%  Similarity=0.389  Sum_probs=78.4

Q ss_pred             cEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccc
Q 041526          109 YIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQD  188 (252)
Q Consensus       109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~  188 (252)
                      .|.+.++|+|+++|.++|+||++.||+++|++ +|+|||||++++||++|+.|+++.+.....+          ..-...
T Consensus         2 ~I~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~-~~~Tl~G~~~~~lg~iP~~Ge~v~i~~~~~~----------~~~~~~   70 (98)
T d2p3ha1           2 DITETSPDKWLIDGDTPLDEVERAIGYELPEG-DYETISGLLFDHANALLKTGDVIEIPLDFEP----------EDYLNN   70 (98)
T ss_dssp             CEEEEETTEEEEETTCBHHHHHHHHTSCCCCS-SCCBHHHHHHHHHCSCCCTTCEEEEECCCCG----------GGGTTC
T ss_pred             CcEEeCCCEEEEEeccCHHHHHHHHCCCCCCC-CccCHHHHHHHHHCcCCCCCCEEEEecCCCc----------eeEEEe
Confidence            37788999999999999999999999999975 7999999999999999999999998422111          011111


Q ss_pred             cccccceEEEEEEEecCCeeeEEEEEEc
Q 041526          189 SKEKHQIYKLEILAGNARKVSAVRFERI  216 (252)
Q Consensus       189 ~~~~~~~~~~~V~~~~~~ri~~V~i~~~  216 (252)
                      .......++++|.+|+++||.+|+++.+
T Consensus        71 ~~~~~R~~rv~V~~~~~~~~~~v~~~~~   98 (98)
T d2p3ha1          71 TSPTQRILRITVLEVERNVPVKLALALL   98 (98)
T ss_dssp             SSCCCCEEEEEEEEEETTEEEEEEEEEC
T ss_pred             cCCcceEEEEEEEEecCccccEEEEEEC
Confidence            2222258999999999999999999853

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.42  E-value=3.1e-13  Score=104.78  Aligned_cols=88  Identities=19%  Similarity=0.309  Sum_probs=78.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++  ++++|+|+.+|+++++..+.. ...++.++|.+++.+|++++++.++++.|.+++.+.++|+|++|.++|+|
T Consensus        38 ~pV~d~--~~~~Givt~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGii  114 (127)
T d2ef7a1          38 VIVVDG--NKPVGIITERDIVKAIGKGKS-LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII  114 (127)
T ss_dssp             EEEEET--TEEEEEEEHHHHHHHHHTTCC-TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             EEeecc--cchhhhcchhHHHHHHHhhcc-ccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEE
Confidence            599985  689999999999988765443 34678899999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHh
Q 041526           81 TLEDVVEEIVG   91 (252)
Q Consensus        81 TleDIleeIvG   91 (252)
                      |..||+.+|..
T Consensus       115 t~~Dll~~i~~  125 (127)
T d2ef7a1         115 SIRDITRAIDD  125 (127)
T ss_dssp             EHHHHHHHHHH
T ss_pred             EHHHHHHHHHh
Confidence            99999999854

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.35  E-value=2.3e-12  Score=99.90  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=75.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHH-cCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQ-KGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~-~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++  ++++|+++.+|+++++. .+......++.++|.+++.++.+++++.++++.|.+++.+..+|+| .|.++|+
T Consensus        39 vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~Gi  115 (127)
T d2rc3a1          39 LLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGL  115 (127)
T ss_dssp             EEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred             EEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEE
Confidence            589875  78999999999987653 2332334678899999999999999999999999999999999998 5999999


Q ss_pred             EcchhHHHHHH
Q 041526           80 VTLEDVVEEIV   90 (252)
Q Consensus        80 VTleDIleeIv   90 (252)
                      ||..|++++++
T Consensus       116 It~~Dil~~~i  126 (127)
T d2rc3a1         116 LSIGDLVKDAI  126 (127)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHh
Confidence            99999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=8.6e-13  Score=101.51  Aligned_cols=86  Identities=22%  Similarity=0.288  Sum_probs=75.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|++.+..      ..++.+++.+++.++++++++.++++.|++++.+.++|+|+.|.++|+|
T Consensus        35 v~Vvd~-~~~~~Gii~~~dl~~~~~------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvi  107 (121)
T d1vr9a3          35 CIVKDR-EGHFRGVVNKEDLLDLDL------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAV  107 (121)
T ss_dssp             EEEECT-TSBEEEEEEGGGGTTSCT------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEE
T ss_pred             EEEEeC-CceeEEEeehhhhhhhhc------cccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEE
Confidence            588865 478999999999985421      3457788989999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..|+++++..++
T Consensus       108 t~~dil~~l~~~l  120 (121)
T d1vr9a3         108 SLHDFLEALIEAL  120 (121)
T ss_dssp             EHHHHHHHHHHSC
T ss_pred             EHHHHHHHHHHhc
Confidence            9999999997765

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=1.2e-12  Score=102.27  Aligned_cols=94  Identities=17%  Similarity=0.276  Sum_probs=79.7

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYG   74 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G   74 (252)
                      +||++++ ++++|+++.+|++..+....      .....++.++|.+++.++.+++++.++++.|++++.+.++|+|++|
T Consensus        36 ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~  114 (141)
T d3ddja1          36 LPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDN  114 (141)
T ss_dssp             EEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             eeccccc-CccccccccccchhhhhccccccccccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCC
Confidence            5898764 78999999999987643210      1124568899999999999999999999999999999999999999


Q ss_pred             CEEEEEcchhHHHHHHhhhcc
Q 041526           75 GTVGVVTLEDVVEEIVGEIFD   95 (252)
Q Consensus        75 ~~vGIVTleDIleeIvGei~D   95 (252)
                      .++|+||..||++++.+.+..
T Consensus       115 ~~iGiIt~~Dil~~l~~~~~~  135 (141)
T d3ddja1         115 TIRGIITERDLLIALHHILVM  135 (141)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHH
T ss_pred             EEEEEEEHHHHHHHHHHHHhh
Confidence            999999999999999887654

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=1.4e-12  Score=101.49  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-----cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-----LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG   75 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-----~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~   75 (252)
                      +||++++ ++++|+++.+|++.++....     .....++.++|.+++.++++++++.+++..|.++  ++++|+|++|.
T Consensus        38 ~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~  114 (132)
T d1yava3          38 IPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINN--GFVCVENDEQV  114 (132)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCB
T ss_pred             eEEeecc-cccccEEEcchhHHHhhccccccccccccccccccccccccccccchhHHHHHHHHHhC--CEEEEEccCCE
Confidence            5999865 79999999999998765321     1123468889999999999999999999999765  45788999999


Q ss_pred             EEEEEcchhHHHHHHhh
Q 041526           76 TVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        76 ~vGIVTleDIleeIvGe   92 (252)
                      ++||||..||++++...
T Consensus       115 ~~Givt~~dil~~l~~~  131 (132)
T d1yava3         115 FEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             EEEEEEHHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHhh
Confidence            99999999999998643

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.32  E-value=3.1e-12  Score=98.16  Aligned_cols=86  Identities=17%  Similarity=0.244  Sum_probs=75.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||.++  ++++|+|+.+||++++..+......++.++|.+++.++++++++.++++.|++++.+.++|+| +|.++|+|
T Consensus        34 ~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Giv  110 (120)
T d1pbja3          34 SVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVI  110 (120)
T ss_dssp             EEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEE
T ss_pred             EEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEE
Confidence            477764  789999999999988776654455679999999999999999999999999999999887764 69999999


Q ss_pred             cchhHHHHH
Q 041526           81 TLEDVVEEI   89 (252)
Q Consensus        81 TleDIleeI   89 (252)
                      |..||+++.
T Consensus       111 t~~Dil~A~  119 (120)
T d1pbja3         111 SATDILRAK  119 (120)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHhcC
Confidence            999999875

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.29  E-value=3.6e-12  Score=98.58  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=71.8

Q ss_pred             CeEEecC-CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQR-IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~-~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+++. .++++|+|+.+|++.+...+.    .....++.+++.+++++.++.++++.|.+++.+..+|||++|.++||
T Consensus        31 ~pVvD~~~~~~lvGivt~~Di~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGi  106 (126)
T d1zfja4          31 VPIVETLANRKLVGIITNRDMRFISDYNA----PISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGL  106 (126)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHHHCSCSSS----BTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEE
T ss_pred             EEEEeeccCCeEEEEeEHHHHHHhhccCC----ceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEE
Confidence            5999753 468999999999987543322    11233456788999999999999999999999999999999999999


Q ss_pred             EcchhHHHHHHh
Q 041526           80 VTLEDVVEEIVG   91 (252)
Q Consensus        80 VTleDIleeIvG   91 (252)
                      ||..||++++..
T Consensus       107 iT~~Dil~~~~~  118 (126)
T d1zfja4         107 ITIKDIEKVIEF  118 (126)
T ss_dssp             EEHHHHHHHHHC
T ss_pred             EEHHHHHHHhhC
Confidence            999999998743

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=1.6e-12  Score=100.14  Aligned_cols=85  Identities=18%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|++....      ...+.++|.+++.++++++++.++++.|.+++.+.++|+|++|.++|+|
T Consensus        35 ~~Vvd~-~~~~~G~it~~dl~~~~~------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGii  107 (122)
T d2yzqa2          35 FPVVNK-EGKLVGIISVKRILVNPD------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL  107 (122)
T ss_dssp             EEEECT-TCCEEEEEESSCC----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             EEEEec-cccchhhhhcchhhhhhc------ccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEE
Confidence            589876 479999999999986532      2356778889999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhh
Q 041526           81 TLEDVVEEIVGE   92 (252)
Q Consensus        81 TleDIleeIvGe   92 (252)
                      |..||+++++++
T Consensus       108 t~~dil~~~~~~  119 (122)
T d2yzqa2         108 TVGDIIRRYFAK  119 (122)
T ss_dssp             EHHHHHHHTTTT
T ss_pred             EHHHHHHHHHhH
Confidence            999999987654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.27  E-value=4.6e-12  Score=100.05  Aligned_cols=90  Identities=18%  Similarity=0.236  Sum_probs=77.4

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHH-cCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQ-KGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~-~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+|+.+|++..+. .+......+++++|.+++.++.+++++.++++.|.+++.+..+|+|+.|.++|+
T Consensus        37 ~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Gi  115 (142)
T d1pvma4          37 LVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGI  115 (142)
T ss_dssp             EEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEE
T ss_pred             EeeeccC-CcccceEEeechhhhhhhhcccccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEE
Confidence            5899764 79999999999986643 333333456899999999999999999999999999999999999999999999


Q ss_pred             EcchhHHHHHHh
Q 041526           80 VTLEDVVEEIVG   91 (252)
Q Consensus        80 VTleDIleeIvG   91 (252)
                      ||..||+..+..
T Consensus       116 it~~Dil~~l~~  127 (142)
T d1pvma4         116 VTLTDLSRYLSR  127 (142)
T ss_dssp             EEHHHHTTTSCH
T ss_pred             EEHHHHHHHHhh
Confidence            999999997754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.27  E-value=1.1e-11  Score=98.59  Aligned_cols=93  Identities=15%  Similarity=0.269  Sum_probs=75.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhh------cCCceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMA------HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~------~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||++++ ++++|+++.+|++..+.... .....++.++|      ..++.++++++++.++++.|.+++.+.++|+|++
T Consensus        38 lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~  116 (153)
T d2ooxe2          38 VPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN  116 (153)
T ss_dssp             EEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTT
T ss_pred             Eeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCC
Confidence            5899764 78999999999987765332 11123455554      3455789999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHHhhhc
Q 041526           74 GGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        74 G~~vGIVTleDIleeIvGei~   94 (252)
                      |.++|+||..||+..++++-.
T Consensus       117 ~~lvGivT~~Dil~~~~~~~~  137 (153)
T d2ooxe2         117 LKLEGILSLADILNYIIYDKT  137 (153)
T ss_dssp             CBEEEEEEHHHHHHHHHSCTT
T ss_pred             CEEEEEEEHHHHHHHHHcCcc
Confidence            999999999999999976544

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=4.7e-12  Score=100.77  Aligned_cols=93  Identities=16%  Similarity=0.285  Sum_probs=74.2

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc-----cc----------ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCc
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-----LE----------STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVH   65 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-----~~----------~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~   65 (252)
                      +||++++.++++|+|+.+|++..+.....     ..          ......++.++++++++++++.+++..|.+++.|
T Consensus        49 ~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~  128 (159)
T d2v8qe2          49 APLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH  128 (159)
T ss_dssp             EEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             eeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCe
Confidence            59998777889999999999876532110     00          0112346678889999999999999999999999


Q ss_pred             eEEEec-CCCCEEEEEcchhHHHHHHhhh
Q 041526           66 MAVVLN-EYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        66 ~AiVVD-E~G~~vGIVTleDIleeIvGei   93 (252)
                      .++|+| ++|.++||||..||++.|.-.|
T Consensus       129 ~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2         129 RLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             CEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             EEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence            999998 6799999999999999986544

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.26  E-value=6.8e-12  Score=97.45  Aligned_cols=82  Identities=22%  Similarity=0.260  Sum_probs=73.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|++..++++.+.      ...++.++|.++++++++++++.++++.|.+++.+.++|||+.|.++|+|
T Consensus        40 ~~Vvd~-~~~l~G~v~~~~l~~~~------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiI  112 (127)
T d2ouxa2          40 VYVVDQ-ENHLVGVISLRDLIVND------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIV  112 (127)
T ss_dssp             EEEECT-TCBEEEEEEHHHHTTSC------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE
T ss_pred             eEEEec-CCeEEEEEEeecccccc------ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEE
Confidence            478876 47999999999997531      24579999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHH
Q 041526           81 TLEDVVEEI   89 (252)
Q Consensus        81 TleDIleeI   89 (252)
                      |..||++.+
T Consensus       113 t~~Dil~~i  121 (127)
T d2ouxa2         113 TVDDIIDVI  121 (127)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHHHH
Confidence            999999876

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=1.4e-11  Score=95.96  Aligned_cols=91  Identities=20%  Similarity=0.255  Sum_probs=76.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|+++.+..+......++.++|.+++.++.+++++.++++.|.+++.+..+|+ +.|.++|+|
T Consensus        39 ~~Vvd~-~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~-~~~~~vGiv  116 (132)
T d2yzia1          39 LVVIND-DGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIE-EEGKIVGIF  116 (132)
T ss_dssp             EEEECT-TSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEE-ETTEEEEEE
T ss_pred             EEEecc-cceeeeeeeHHHHHHHHhhccCccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEE-ECCEEEEEE
Confidence            588876 478999999999997765443334567899999999999999999999999999998877765 569999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..|++.++..++
T Consensus       117 t~~Dil~a~~~~l  129 (132)
T d2yzia1         117 TLSDLLEASRRRL  129 (132)
T ss_dssp             EHHHHHHHHHCCS
T ss_pred             EHHHHHHHHHHHH
Confidence            9999999986655

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.24  E-value=9.8e-12  Score=97.52  Aligned_cols=91  Identities=20%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC--------CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG--------ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE   72 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~--------~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE   72 (252)
                      +||++++ ++++|+|+.+|++..+...        ......++.++|.+++.++++++++.+++..|.+++.+.++|+|+
T Consensus        36 lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (139)
T d2o16a3          36 VPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  114 (139)
T ss_dssp             EEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             eeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEEC
Confidence            5999764 7899999999998765331        111234689999999999999999999999999999999999985


Q ss_pred             CCCEEEEEcchhHHHHHHhhh
Q 041526           73 YGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        73 ~G~~vGIVTleDIleeIvGei   93 (252)
                       |.++|+||..||+.++...+
T Consensus       115 -~~lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3         115 -DVLVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             -TEEEEEECHHHHHHHHHHHH
T ss_pred             -CEEEEEEEHHHHHHHHHHHH
Confidence             99999999999999987654

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=7.6e-12  Score=96.21  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=73.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHH-HcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYV-QKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~-~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||++++ ++++|+++.+|++... ..+.......+.++|..++.++++++++.++++.|.+++.+..+|+|+ |.++|+
T Consensus        35 ~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~~lvGi  112 (123)
T d1y5ha3          35 LPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGI  112 (123)
T ss_dssp             EEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEE
T ss_pred             eEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEEC-CEEEEE
Confidence            5899764 7899999999997643 333322345678899888999999999999999999999999999986 899999


Q ss_pred             EcchhHHHHH
Q 041526           80 VTLEDVVEEI   89 (252)
Q Consensus        80 VTleDIleeI   89 (252)
                      ||..||+.+|
T Consensus       113 it~~Dil~~l  122 (123)
T d1y5ha3         113 VTEADIARHL  122 (123)
T ss_dssp             EEHHHHHHTC
T ss_pred             EEHHHHHhhC
Confidence            9999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.24  E-value=8.7e-12  Score=101.03  Aligned_cols=97  Identities=11%  Similarity=0.180  Sum_probs=76.9

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHc----CCccc---------------ccchhhhhcCCceecCCCCcHHHHHHHHHH
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQK----GELLE---------------STKVADMAHKPAYFVPDSMSVWNLLREFRI   61 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~----~~~~~---------------~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~   61 (252)
                      +||++.+.++++|+|+.+|++..+..    .....               .......|.++++++++++++.+++..|.+
T Consensus        56 lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~  135 (179)
T d2ooxe1          56 APLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK  135 (179)
T ss_dssp             EEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHH
T ss_pred             EEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhh
Confidence            59999777899999999999875431    00000               001122466899999999999999999999


Q ss_pred             cCCceEEEecCCC-----CEEEEEcchhHHHHHHhhhccCC
Q 041526           62 RKVHMAVVLNEYG-----GTVGVVTLEDVVEEIVGEIFDES   97 (252)
Q Consensus        62 ~~~~~AiVVDE~G-----~~vGIVTleDIleeIvGei~DE~   97 (252)
                      ++.|.++|+|+.|     .++||||..||++.|+..+.+.+
T Consensus       136 ~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~~~~~  176 (179)
T d2ooxe1         136 SRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETA  176 (179)
T ss_dssp             TTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTCGGGG
T ss_pred             cCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhhhHhh
Confidence            9999999999876     49999999999999998887653

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.8e-11  Score=95.88  Aligned_cols=89  Identities=24%  Similarity=0.418  Sum_probs=67.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCccc-ccchh------hhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLE-STKVA------DMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~-~~~l~------~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||++. .++++|+++.+|++..+....... ...+.      ..+..++++|++++++.++++.|.+++.+.++|+|++
T Consensus        43 ipVvd~-~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~  121 (140)
T d2nyca1          43 VPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV  121 (140)
T ss_dssp             EEEECT-TCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             EEEEec-CCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCC
Confidence            589975 468999999999998765432110 11111      1234677899999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHH
Q 041526           74 GGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        74 G~~vGIVTleDIleeIv   90 (252)
                      |.++|+||..||++.|+
T Consensus       122 ~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         122 GRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             SBEEEEEEHHHHHHHHH
T ss_pred             CeEEEEEEHHHHHHHHh
Confidence            99999999999999875

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=4.7e-12  Score=100.41  Aligned_cols=86  Identities=22%  Similarity=0.310  Sum_probs=74.3

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV   80 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV   80 (252)
                      +||+++ .++++|+|+.+|++....      ...+.++|.+++.++++++++.++++.|.+++.+.++|||+.|.++|+|
T Consensus        40 ~~Vvd~-~~~l~G~v~~~dl~~~~~------~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiI  112 (144)
T d2yvxa2          40 IYVVDE-KGRLKGVLSLRDLIVADP------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIV  112 (144)
T ss_dssp             CEEBCT-TCBBCCBCBHHHHTTSCT------TCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEE
T ss_pred             eEEecC-CCCEecccchhhhhhccc------ccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEE
Confidence            478765 479999999999975421      3457889999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHhhh
Q 041526           81 TLEDVVEEIVGEI   93 (252)
Q Consensus        81 TleDIleeIvGei   93 (252)
                      |..||++.+..+.
T Consensus       113 t~~Dil~~l~~e~  125 (144)
T d2yvxa2         113 TVDDVLDVLEAEA  125 (144)
T ss_dssp             EHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHh
Confidence            9999999874433

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=3.1e-11  Score=94.46  Aligned_cols=90  Identities=14%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcC---------------CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCc
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKG---------------ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVH   65 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~---------------~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~   65 (252)
                      +||++++ ++++|+|+.+||+.++...               ......++..++ +.++++.+++++.+++..|.+++.+
T Consensus        38 ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~  115 (145)
T d1o50a3          38 TVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQ  115 (145)
T ss_dssp             EEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             EEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhhhccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCce
Confidence            5899864 7899999999998754210               011223466666 5678999999999999999999999


Q ss_pred             eEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           66 MAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        66 ~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      .++|||+.|.++|+||..||+.+|..+
T Consensus       116 ~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         116 EMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             EEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             EEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            999999999999999999999998543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.1e-11  Score=98.19  Aligned_cols=89  Identities=21%  Similarity=0.325  Sum_probs=73.6

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCC------------------------------cccccchhhhhcCCceecCCCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE------------------------------LLESTKVADMAHKPAYFVPDSM   50 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~------------------------------~~~~~~l~~~~~r~~~~Vpe~~   50 (252)
                      +||++++ ++++|+|+.+|++.......                              .....++.++|.+++.++.+++
T Consensus        38 lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~  116 (156)
T d2yzqa1          38 LPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHM  116 (156)
T ss_dssp             EEEECTT-SCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGGTCBSSCCCBCTTS
T ss_pred             EEEEeCC-CCceeEEeeeechhhhcccccccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECccc
Confidence            5999764 78999999999875322110                              0123457788989999999999


Q ss_pred             cHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           51 SVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        51 ~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++.++++.|.+++.+..+|+|+.|.++||||..||+++|+
T Consensus       117 ~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1         117 TVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred             ccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHhC
Confidence            9999999999999999999999999999999999998763

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2.8e-11  Score=95.02  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=72.0

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-cccchhh------hhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-ESTKVAD------MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY   73 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-~~~~l~~------~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~   73 (252)
                      +||+++ .++++|+|+.+|++..+...... ....+.+      .+..++.++.+++++.++++.|.+++.+.++|+|++
T Consensus        46 lpVvd~-~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~  124 (145)
T d2v8qe1          46 LPVVDE-KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH  124 (145)
T ss_dssp             EEEECT-TSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             cccccc-CCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccC
Confidence            589975 47899999999998776543211 1122222      345678899999999999999999999999999999


Q ss_pred             CCEEEEEcchhHHHHHH
Q 041526           74 GGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        74 G~~vGIVTleDIleeIv   90 (252)
                      |.++|+||..||++.++
T Consensus       125 g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1         125 DVVKGIVSLSDILQALV  141 (145)
T ss_dssp             SBEEEEEEHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHH
Confidence            99999999999999986

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.15  E-value=5.4e-11  Score=93.79  Aligned_cols=90  Identities=17%  Similarity=0.227  Sum_probs=72.6

Q ss_pred             CeEEecC-CCCEEEEEEHHHHhHHHHcCC-------------------------cccccchhhhhcCCceecCCCCcHHH
Q 041526            1 VPVFEQR-IDNIVGIAYAMDLLDYVQKGE-------------------------LLESTKVADMAHKPAYFVPDSMSVWN   54 (252)
Q Consensus         1 lPV~~~~-~d~IvGiv~~kDll~~~~~~~-------------------------~~~~~~l~~~~~r~~~~Vpe~~~l~~   54 (252)
                      +||++++ .+.++|+++..|++.++....                         ......+.++|.+++++|.+++++.+
T Consensus        45 ~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~  124 (160)
T d2d4za3          45 FPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQK  124 (160)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHH
T ss_pred             cccccccccccccccchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHH
Confidence            6999853 367999999999987653210                         00112244578889999999999999


Q ss_pred             HHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           55 LLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        55 lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      +++.|++.+.+.++|+| .|.++||||..||+++|.|
T Consensus       125 ~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3         125 THTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhCC
Confidence            99999999999999987 5999999999999999876

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.9e-11  Score=94.28  Aligned_cols=90  Identities=20%  Similarity=0.333  Sum_probs=72.9

Q ss_pred             CeEEec-CCCCEEEEEEHHHHhHHHHcC----C--------------------cccccchhhhhcCCceecCCCCcHHHH
Q 041526            1 VPVFEQ-RIDNIVGIAYAMDLLDYVQKG----E--------------------LLESTKVADMAHKPAYFVPDSMSVWNL   55 (252)
Q Consensus         1 lPV~~~-~~d~IvGiv~~kDll~~~~~~----~--------------------~~~~~~l~~~~~r~~~~Vpe~~~l~~l   55 (252)
                      +||+.. +.+.++|+|+.+||+.++...    .                    ......+.++|.+++.++++++++.++
T Consensus        43 ~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v  122 (169)
T d2j9la1          43 FPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV  122 (169)
T ss_dssp             EEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHH
T ss_pred             eeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHH
Confidence            599953 346799999999999765311    0                    001234788998999999999999999


Q ss_pred             HHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           56 LREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        56 L~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++.|.+++.+.++|+| +|.++||||..||++++..
T Consensus       123 ~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         123 VDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             HHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            9999999999998875 6999999999999998843

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.11  E-value=6e-11  Score=91.51  Aligned_cols=87  Identities=21%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             CeEEec-CCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526            1 VPVFEQ-RIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV   79 (252)
Q Consensus         1 lPV~~~-~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI   79 (252)
                      +||+.. ..++++|+++..|++.++..+... .... ..+.+++.++.+++++.++++.|.+++.+..+|+|++|.++|+
T Consensus        35 ~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Gi  112 (131)
T d2riha1          35 AVLTARDNPKRPVAVVSERDILRAVAQRLDL-DGPA-MPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGV  112 (131)
T ss_dssp             EEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-TSBS-GGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred             EEEEEEcCCCEEEEEEeeecccccccccccc-cccc-ccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEE
Confidence            477753 246799999999999876654321 2223 3445788999999999999999999999999999999999999


Q ss_pred             EcchhHHHHH
Q 041526           80 VTLEDVVEEI   89 (252)
Q Consensus        80 VTleDIleeI   89 (252)
                      ||..||++++
T Consensus       113 it~~Dll~~~  122 (131)
T d2riha1         113 LSIRDLCFER  122 (131)
T ss_dssp             EEHHHHHSCH
T ss_pred             EEHHHHHHHH
Confidence            9999999875

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.10  E-value=1.4e-11  Score=94.76  Aligned_cols=85  Identities=13%  Similarity=0.198  Sum_probs=47.6

Q ss_pred             CeEEec--CCCCEEEEEEHHHHhHHHHcCCcccccchhhh--hcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526            1 VPVFEQ--RIDNIVGIAYAMDLLDYVQKGELLESTKVADM--AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT   76 (252)
Q Consensus         1 lPV~~~--~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~--~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~   76 (252)
                      +||+++  ..++++|+|+.+|+........   ...+..+  +..++.++++++++.++++.|++++.+.++|+|+.|.+
T Consensus        30 ~pVvd~~~~~~~lvGivT~~Di~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~l  106 (120)
T d1jr1a4          30 IPITDTGRMGSRLVGIISSRDIDFLKEEEH---DRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDEL  106 (120)
T ss_dssp             --------CTTCCC-------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEE
T ss_pred             EEEeeccccCCeEeeeeeeeeeeehhcccc---CceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEE
Confidence            689974  3468999999999864433221   1223333  23467899999999999999999999999999999999


Q ss_pred             EEEEcchhHHHH
Q 041526           77 VGVVTLEDVVEE   88 (252)
Q Consensus        77 vGIVTleDIlee   88 (252)
                      +||||..||+..
T Consensus       107 vGiiT~~Di~k~  118 (120)
T d1jr1a4         107 VAIIARTDLKKN  118 (120)
T ss_dssp             EEEECHHHHHHH
T ss_pred             EEEEEHHHhhhc
Confidence            999999999976

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.09  E-value=8.7e-11  Score=90.90  Aligned_cols=86  Identities=19%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             CeEEecCCCCEEEEEEHHHHhHHHHcCCc----------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526            1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL----------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL   70 (252)
Q Consensus         1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~----------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV   70 (252)
                      +||++   ++++|+++..|++..+.....          ....+++++|.+++.++++++++.+++..|.+++.+.++|+
T Consensus        35 l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVv  111 (135)
T d3ddja2          35 IIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVV  111 (135)
T ss_dssp             EEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             EEEEe---cceeceeeccchhhhhccccccchhhhhccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEE
Confidence            58875   379999999999876532211          12346888999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEcchhHHHHH
Q 041526           71 NEYGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        71 DE~G~~vGIVTleDIleeI   89 (252)
                      |++|.++|+||..||+..+
T Consensus       112 d~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2         112 DINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             CTTSCEEEEEEHHHHGGGG
T ss_pred             eCCCEEEEEEEHHHHHHHH
Confidence            9999999999999999865

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.56  E-value=1.2e-07  Score=72.96  Aligned_cols=59  Identities=25%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      .+++++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+||..|++..+..
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~   63 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV   63 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhh
Confidence            46889999999999999999999999999999999999999999999999999988754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=1.3e-07  Score=71.72  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=52.8

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      +++++|.+++.++.+++++.++++.|++++.+.++|+|+.|.++|+||..|++..++
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~   58 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL   58 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTG
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhh
Confidence            467899899999999999999999999999999999999999999999999987654

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=6e-07  Score=67.79  Aligned_cols=56  Identities=30%  Similarity=0.343  Sum_probs=51.4

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG   91 (252)
                      ++++|.+++.+|++++++.++++.|++++.+.++|+|+ |.++|+||..||+..+..
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-~~~~Gvit~~Di~~~l~~   57 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE-GVRVGIVTTWDVLEAIAE   57 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET-TEEEEEEEHHHHHHHHHH
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC-CcEEEEEEeeeccccccc
Confidence            67899999999999999999999999999988888875 999999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=6.4e-07  Score=69.65  Aligned_cols=57  Identities=14%  Similarity=0.273  Sum_probs=53.5

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .++++|.+.+.+|++++++.++++.|++++.+.++|+|+.|.++|+||..|++..++
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~   60 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   60 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhh
Confidence            467889899999999999999999999999999999999999999999999998775

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.30  E-value=5.4e-07  Score=69.65  Aligned_cols=61  Identities=11%  Similarity=0.170  Sum_probs=55.8

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhc
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~   94 (252)
                      +++++|.+++.++.+++++.++++.|++++.+..+|+|+.|.++|+||..|++..+...+.
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~   63 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ   63 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhh
Confidence            4678899999999999999999999999999999999999999999999999988765544

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=3.8e-07  Score=71.31  Aligned_cols=58  Identities=14%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      .+++++|.|++.++++++++.++++.|++++....+|+|+.|.++|+||..|++..+.
T Consensus         4 ~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~   61 (156)
T d2yzqa1           4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSE   61 (156)
T ss_dssp             CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGG
T ss_pred             CCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhc
Confidence            4578899999999999999999999999999999999999999999999999987554

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.24  E-value=1.3e-06  Score=66.49  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      ..++++|.+++.++++++++.++++.|++++.+..+|+|+ |+++|+||..|++..+....
T Consensus         4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Givt~~dl~~~~~~~~   63 (127)
T d2ef7a1           4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGK   63 (127)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHTTC
T ss_pred             cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhcchhHHHHHHHhhc
Confidence            4578999999999999999999999999999999999975 89999999999999876443

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.23  E-value=4.8e-07  Score=68.61  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEec
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRA  114 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~  114 (252)
                      ++++|.++++++++++++.++++.|.+++.+.++|+|+.|.+.|+||..|++.+.-.....      .       +.  .
T Consensus         3 v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~~------~-------~~--~   67 (122)
T d2yzqa2           3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLA------M-------LV--K   67 (122)
T ss_dssp             HHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------------C-------CC--B
T ss_pred             cccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcccchh------h-------cc--c
Confidence            6788888999999999999999999999999999999999999999999998653211100      0       11  1


Q ss_pred             CceEEEeCCcChHHhHhhc
Q 041526          115 EGIYDVDANTSIDQLSEDL  133 (252)
Q Consensus       115 dg~~~v~G~~~L~dl~~~l  133 (252)
                      ..-+.++...++.++.+.+
T Consensus        68 ~~~~~v~~~~~l~~~~~~~   86 (122)
T d2yzqa2          68 RDVPVVKENDTLKKAAKLM   86 (122)
T ss_dssp             SCCCEEETTSBHHHHHHHH
T ss_pred             cceeecchhhHHHHHHHHH
Confidence            2334677788888765543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.16  E-value=2.2e-06  Score=65.08  Aligned_cols=60  Identities=17%  Similarity=0.406  Sum_probs=53.9

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe--cCCCCEEEEEcchhHHHHHHhhh
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL--NEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV--DE~G~~vGIVTleDIleeIvGei   93 (252)
                      +++++|.++++++++++++.++++.|++++.+..+|+  |+.|.++|++|..|++..+.+..
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            3678899999999999999999999999999999998  66789999999999999886654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=1.7e-06  Score=66.60  Aligned_cols=61  Identities=11%  Similarity=0.141  Sum_probs=54.8

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhc
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~   94 (252)
                      ++.++|.++|..+++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+.....
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~   65 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFF   65 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHH
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccc
Confidence            3566788899999999999999999999999999999999999999999999998765543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.10  E-value=2.5e-06  Score=65.34  Aligned_cols=60  Identities=12%  Similarity=0.180  Sum_probs=55.3

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      +++++|.+.+.+|++++++.++++.|++++.+..+|+|+.|.+.|++|..|++..+....
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~   62 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV   62 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccc
Confidence            578899999999999999999999999999999999999999999999999998875433

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=4.3e-06  Score=64.24  Aligned_cols=92  Identities=16%  Similarity=0.272  Sum_probs=62.4

Q ss_pred             hhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcH-HHHhhhcccEEEecCc
Q 041526           38 MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSK-EEIQKKTGYIVMRAEG  116 (252)
Q Consensus        38 ~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~-~~~~~~~~~i~~~~dg  116 (252)
                      .+..++.++..++++.++++.|++++...++|+|+.|.++|+||..|++..+........... ........   .....
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   90 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS---DDFEG   90 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC--------
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhh---hcccc
Confidence            456788999999999999999999999999999999999999999999998876544322211 11110000   11233


Q ss_pred             eEEEeCCcChHHhHhh
Q 041526          117 IYDVDANTSIDQLSED  132 (252)
Q Consensus       117 ~~~v~G~~~L~dl~~~  132 (252)
                      .+.+...+++.++.+.
T Consensus        91 ~~~v~~~~~l~~~~~~  106 (140)
T d2nyca1          91 VYTCTKNDKLSTIMDN  106 (140)
T ss_dssp             -CEECTTSBHHHHHHH
T ss_pred             cEEECCCCcHHHHHHH
Confidence            4567777777766543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=2.7e-06  Score=64.08  Aligned_cols=53  Identities=25%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +.++|.+.+..|.+++++.++++.|++.+.+.++|+|+.|.++|+||..|++.
T Consensus         3 v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~   55 (121)
T d1vr9a3           3 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD   55 (121)
T ss_dssp             GGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT
T ss_pred             chhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhh
Confidence            66788899999999999999999999999999999999999999999999974

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=2.7e-06  Score=64.93  Aligned_cols=60  Identities=13%  Similarity=0.058  Sum_probs=54.2

Q ss_pred             chhhhh--cCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526           34 KVADMA--HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        34 ~l~~~~--~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei   93 (252)
                      +++++|  .+.+.+|.++.++.++++.|.+++....+|+|+.|.++|++|..||+..+++..
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~   64 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE   64 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSS
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccc
Confidence            467777  578899999999999999999999999999999999999999999999987543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.96  E-value=6.4e-06  Score=62.37  Aligned_cols=51  Identities=12%  Similarity=0.097  Sum_probs=45.6

Q ss_pred             hcCCceecCCCCcHHHHHHHHHHcCCceEEEecC--CCCEEEEEcchhHHHHH
Q 041526           39 AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE--YGGTVGVVTLEDVVEEI   89 (252)
Q Consensus        39 ~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE--~G~~vGIVTleDIleeI   89 (252)
                      |.+.|++|++++++.++++.|.+++...++|+|+  .|.++|+||..|++...
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh
Confidence            3467789999999999999999999999999997  67899999999997653

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=1.1e-05  Score=61.95  Aligned_cols=52  Identities=21%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe   92 (252)
                      +++.+|.+++++.++++.|.+++...++|+|+.|.++|+||..|++..+...
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc
Confidence            6789999999999999999999999999999999999999999998877654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.91  E-value=8.6e-06  Score=61.72  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             hhhhhc---CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           35 VADMAH---KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        35 l~~~~~---r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++++|.   ++++++++++++.++++.|++++...++|+| .|.++|+||..|++..+.
T Consensus         4 V~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~   61 (127)
T d2rc3a1           4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSY   61 (127)
T ss_dssp             HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGG
T ss_pred             HHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhh
Confidence            445553   5789999999999999999999999999997 699999999999988763

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.90  E-value=9.4e-06  Score=62.73  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC--CCCEEEEEcchhHHHHHHhhhc
Q 041526           32 STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE--YGGTVGVVTLEDVVEEIVGEIF   94 (252)
Q Consensus        32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE--~G~~vGIVTleDIleeIvGei~   94 (252)
                      ..+++++|.+++.+|++++++.++++.|++++.+..+|+|+  .|.++|++|..|++..+.....
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~   74 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRIS   74 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccc
Confidence            34688999999999999999999999999999999999984  5789999999999998876544

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.89  E-value=2.6e-05  Score=60.70  Aligned_cols=116  Identities=13%  Similarity=0.146  Sum_probs=77.2

Q ss_pred             CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCC-cHHHHhhhcccEEEecCceEE
Q 041526           41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESD-SKEEIQKKTGYIVMRAEGIYD  119 (252)
Q Consensus        41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d-~~~~~~~~~~~i~~~~dg~~~  119 (252)
                      ..+.+|.+++++.++++.|.+++...++|+|+.|.++|+||..|++..+.....+..+ ...+.....+   ......+.
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~   88 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRP---ANFDGVHT   88 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSC---CCSSCCCE
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeee---cccCCCeE
Confidence            4788999999999999999999999999999999999999999999887654332221 1111111100   11234456


Q ss_pred             EeCCcChHHhHhhc---CCC-CC---CCC---ccCCHHHHHHHHhCCCCC
Q 041526          120 VDANTSIDQLSEDL---NIK-MP---EGH---QYETVSGFVCEAFGYIPR  159 (252)
Q Consensus       120 v~G~~~L~dl~~~l---gi~-l~---~~~---~~~TLaGlil~~lg~iP~  159 (252)
                      +..+.++.++.+.+   ++. ++   +.+   +.-|...++-..++..+.
T Consensus        89 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~~~  138 (153)
T d2ooxe2          89 CRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT  138 (153)
T ss_dssp             ECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCTTC
T ss_pred             ECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCccc
Confidence            78888888876654   222 12   221   135777777666654443

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.70  E-value=2.7e-05  Score=59.11  Aligned_cols=54  Identities=13%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             chhhhhcCCceecCCCCcHHHHHHHHHHcC-----CceEEEecCCCCEEEEEcchhHHH
Q 041526           34 KVADMAHKPAYFVPDSMSVWNLLREFRIRK-----VHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~-----~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +...+|.++++++++++++.++++.|++++     .+..+|+|+.|.++|++++.+++.
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~   60 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV   60 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccc
Confidence            356789999999999999999999999874     567889999999999999988864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=7.5e-06  Score=63.67  Aligned_cols=53  Identities=25%  Similarity=0.333  Sum_probs=47.4

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcC-----CceEEEecCCCCEEEEEcchhHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRK-----VHMAVVLNEYGGTVGVVTLEDVVE   87 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~-----~~~AiVVDE~G~~vGIVTleDIle   87 (252)
                      +..+|+++++++++++++.++++.|++++     .+..+|+|+.|.++|+||..|++.
T Consensus         3 aG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~   60 (144)
T d2yvxa2           3 AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV   60 (144)
T ss_dssp             SGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTT
T ss_pred             cccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhh
Confidence            56789999999999999999999998774     567789999999999999999865

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=5.9e-05  Score=58.47  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             chhhhh--cCCceecCCCCcHHHHHHHHHHcCCceEEEec-CCCCEEEEEcchhHHHHHHhhh
Q 041526           34 KVADMA--HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN-EYGGTVGVVTLEDVVEEIVGEI   93 (252)
Q Consensus        34 ~l~~~~--~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD-E~G~~vGIVTleDIleeIvGei   93 (252)
                      ++.++|  ..++++++.++++.++++.|.+++...++|+| +.|.++|+||..|++..+.+..
T Consensus        14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~   76 (159)
T d2v8qe2          14 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYY   76 (159)
T ss_dssp             BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            466777  34568999999999999999999999999986 4688999999999999886543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.45  E-value=6.4e-05  Score=59.39  Aligned_cols=59  Identities=17%  Similarity=0.106  Sum_probs=51.9

Q ss_pred             chhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEec-CCCCEEEEEcchhHHHHHHhh
Q 041526           34 KVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLN-EYGGTVGVVTLEDVVEEIVGE   92 (252)
Q Consensus        34 ~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD-E~G~~vGIVTleDIleeIvGe   92 (252)
                      .+.++|.  .+++++.+++++.+++..|.+++...++|+| +.|.++|++|..|++..+...
T Consensus        21 ~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~   82 (179)
T d2ooxe1          21 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY   82 (179)
T ss_dssp             BHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             EeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhc
Confidence            4677774  4679999999999999999999999999998 568899999999999988654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.21  E-value=0.00013  Score=54.99  Aligned_cols=54  Identities=13%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526           35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV   90 (252)
Q Consensus        35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv   90 (252)
                      ++++|.+.+.++++++++.++++.|++++.+..+|+|+  .++|++|..|++..+.
T Consensus         3 V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~   56 (135)
T d3ddja2           3 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVE   56 (135)
T ss_dssp             GGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGT
T ss_pred             eeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhc
Confidence            67788888999999999999999999999999999975  7999999999987764

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00064  Score=53.17  Aligned_cols=48  Identities=23%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             eecCCCCcHHHHHHHHHHcCCceEEEe--cCCCCEEEEEcchhHHHHHHh
Q 041526           44 YFVPDSMSVWNLLREFRIRKVHMAVVL--NEYGGTVGVVTLEDVVEEIVG   91 (252)
Q Consensus        44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVV--DE~G~~vGIVTleDIleeIvG   91 (252)
                      ..+.+++++.++++.|++++.+-.+|+  ++.|.++|+||..||+..+..
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~   69 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   69 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhc
Confidence            445788899999999999998888888  567889999999999998854

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=2.4e-05  Score=58.76  Aligned_cols=49  Identities=8%  Similarity=0.011  Sum_probs=16.5

Q ss_pred             cCCceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHHH
Q 041526           40 HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVEE   88 (252)
Q Consensus        40 ~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIlee   88 (252)
                      .+.|+++++++++.++++.|++++....+|+|+   .|.++|+||..|+...
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~   54 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL   54 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTTCCC-----------
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh
Confidence            367789999999999999999999888889985   6789999999998543