Citrus Sinensis ID: 041538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
METCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcc
Coil and Loop (DISEMBL)
METCSEEkkmitepllinknpkggirtlpfIIANEAFERmastgfmpNMILYLCREYnmkitegtNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTtifpharplacdytlrdscesatGSQLMLLYLAFGLMslggggirssslafgadqlekgdgiksksegALKSYFSWYYVSVSASSMVAVTFIVYIQdnlgwkvgfgipaaim
Flexible Loop (DISEMBL)
metcseekkmitepllinknpkggirTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKgdgiksksegALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM
Low Complexity Region (SEG)
METCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYlafglmslggggirssslAFGADQLEKGDGIKSKSEGALKsyfswyyvsvsassmvavTFIVYIQDNLGWKVGFGIPAAIM
Disordered region (IsUnstruct)
**************LLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFG****************ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA***
Disordered Region (DISOPRED)
***********************GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPL**************GSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGD*******GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM
Disordered Region (DISEMBL)
*********MITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM
Disordered Region (DISPRO)
*****EEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9M817	607	Probable peptide transpor	yes	no	0.96	0.355	0.554	1e-65
Q8LPL2	591	Probable peptide/nitrate	no	no	0.968	0.368	0.524	5e-64
Q9LYD5	481	Putative peptide/nitrate	no	no	0.933	0.436	0.465	5e-49
Q9CAR9	555	Putative peptide/nitrate	no	no	0.96	0.389	0.381	2e-41
Q9SX20	596	Probable nitrite transpor	no	no	0.955	0.360	0.410	5e-39
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.902	0.327	0.355	1e-38
Q9M9V7	587	Probable peptide/nitrate	no	no	0.884	0.339	0.376	3e-36
Q3E8X3	559	Probable peptide/nitrate	no	no	0.902	0.363	0.381	1e-35
Q9LV10	616	Probable peptide/nitrate	no	no	0.933	0.340	0.328	5e-35
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.92	0.359	0.345	1e-34

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  249 bits (635), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/222 (55%), Positives = 159/222 (71%), Gaps = 6/222 (2%)

Query: 5   SEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG 64
           +E K++ T      K  KGGI T+PFIIANEAFE++AS G +PNMI+YL R+Y   + +G
Sbjct: 8   TEAKQIQTNE---GKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKG 64

Query: 65  TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC 124
           TNVLF WSAASNF P+LGAFL+DSY+GR+  I    ++  LGMVLLWLT + P  +P  C
Sbjct: 65  TNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPC 124

Query: 125 DYTLRDS-CESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL 183
           D T   S C S+T SQL LLY AF L+S+G GGIR  SLAFGADQL+  +    K+E  L
Sbjct: 125 DPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKE--NPKNERVL 182

Query: 184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           +S+F WYY S + + ++A T IVYIQ++LGWK+GFG+PA +M
Sbjct: 183 ESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLM 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  244 bits (622), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 157/221 (71%), Gaps = 3/221 (1%)

Query: 5   SEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG 64
           +E K+ + +P+   +  KGG+ T+PFIIANE FE++AS G + NMILYL  +Y + + +G
Sbjct: 8   TESKETLQQPI-TRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66

Query: 65  TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC 124
             VLF W AA+NF+P++GAFL+DSY+GR+  I    ++ LLGMV+LWLT + P  +P  C
Sbjct: 67  QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126

Query: 125 DYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK 184
             T   +C SAT SQL LLY AF L+S+G GGIR  SLAFGADQL+  +    K+E  L+
Sbjct: 127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKEN--PKNERVLE 184

Query: 185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           S+F WYY S S + ++A T IVYIQD+LGWK+GFGIPA +M
Sbjct: 185 SFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILM 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1

 Score =  194 bits (493), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 142/217 (65%), Gaps = 7/217 (3%)

Query: 10  MITEPLLINKNP-KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVL 68
           M  E LL+ +   K GI T+PFI+A++A E++A  G +PNMIL+L  EY M   E  N+L
Sbjct: 1   MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60

Query: 69  FFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTL 128
           F WSAA+NF P++GAF+ADSY GR+ +IGFG    L GMVLLWLTTI    RP  CD  L
Sbjct: 61  FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTII---RP-ECD-KL 115

Query: 129 RDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS 188
            + C+  T  + +LLY  F L ++G GG+RSS LAF ADQL+     +  +  +L++ F+
Sbjct: 116 TNVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTS-SLETLFN 174

Query: 189 WYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           WYY SV  +  ++ + +V++Q   GW++GFG+  A M
Sbjct: 175 WYYFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAM 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 131/220 (59%), Gaps = 4/220 (1%)

Query: 5   SEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG 64
             EK   +  L   +    G + +P+II NE  ER+A+ G M N ++Y+ REY+M   + 
Sbjct: 2   DNEKGTSSSDLTTRQRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQA 61

Query: 65  TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC 124
             ++  WSA +NF PI+GAF++DSY G++  I FG I  LLGM++L  T++ P+ RP  C
Sbjct: 62  VTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPC 121

Query: 125 DY-TLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL 183
               +   C   + SQL +L     L+S+G GGIRS S+ F  DQ +  D  +   EG+ 
Sbjct: 122 TADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFD--DSTEEGREGS- 178

Query: 184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA 223
           +S+FSWYY + +   +V++T ++Y+Q+N+ W +GF IP  
Sbjct: 179 RSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTV 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 9/224 (4%)

Query: 2   ETCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKI 61
           +   EEK++   P      PKGG+ T+PFI ANE  E++A  GF  NMI YL  + ++ +
Sbjct: 8   KISEEEKQLHGRP----NRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPL 63

Query: 62  TEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP 121
           T+  N L  ++  S+  P+LGAF+ADS+ GR+  I F  I   +GM LL ++ I P  RP
Sbjct: 64  TKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRP 123

Query: 122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG 181
             C     + C  A  +QL +LY+A  L +LG GGIR   +AFGADQ ++ D  ++    
Sbjct: 124 PPCKG--EEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW 181

Query: 182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
              +YF+WYY  + A+ ++AVT +V+IQDN+GW +G GIP   M
Sbjct: 182 ---NYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAM 222

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 123/211 (58%), Gaps = 8/211 (3%)

Query: 17  INKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASN 76
           + K P GG R + FI+ NE  ER+ S G + N ++YL + ++++  +  NV+  WS  +N
Sbjct: 48  VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106

Query: 77  FLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESAT 136
             P++GA+++D+YVGR+  I F     LLG++ + LT  FP   P +C+     SC    
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166

Query: 137 GSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKG--DGIKSKSEGALKSYFSWYYVSV 194
             Q+ +L L    +S+G GGIR  S+ FG DQ ++   +G+K      + S+F+WYY++ 
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVK-----GVASFFNWYYMTF 221

Query: 195 SASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           +   ++  T +VYIQD + W +GF IP  +M
Sbjct: 222 TVVLIITQTVVVYIQDQVSWIIGFSIPTGLM 252

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 3/202 (1%)

Query: 24  GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGA 83
           G + +PFII NE FE++   G   N+++YL   +NMK      V+  +   SNF  I+ A
Sbjct: 22  GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81

Query: 84  FLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLL 143
           FL DSY GRY  + F  I C LG V + LT +     P  C   +   C   +  Q+M L
Sbjct: 82  FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141

Query: 144 YLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVT 203
             A  L+ +G GGIR  +L FGADQ    D    + +  ++S+F+WY+ + + + MV++T
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQF---DPKTKEGKRGIESFFNWYFFTFTFAQMVSLT 198

Query: 204 FIVYIQDNLGWKVGFGIPAAIM 225
            IVY+Q N+ W +G  IPA +M
Sbjct: 199 LIVYVQSNVSWSIGLAIPAILM 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 19  KNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFL 78
           K  KGG R + +IIANE+FE++AS   + N+ +YL  +YN+      NV+  W  + N L
Sbjct: 15  KKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNIL 74

Query: 79  PILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGS 138
            + GAF++D+Y+GR+  +  G I   +GM +  LT   P  RP AC      S + A   
Sbjct: 75  TLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDACIDPSNCSNQPAKW- 133

Query: 139 QLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASS 198
           QL +L+   GL+++G GG+R  ++AFGADQ    D    K +  L+++F+W+Y S + + 
Sbjct: 134 QLGVLFSGLGLLAIGAGGVRPCNIAFGADQF---DTSTKKGKAHLETFFNWWYFSFTVAL 190

Query: 199 MVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           ++A+T +VYIQ N+ W +GF IP A +
Sbjct: 191 VIALTGVVYIQTNISWVIGFVIPTACL 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 15/225 (6%)

Query: 2   ETCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKI 61
           E    +KK++            G + +PFII NE FE++   G + N+++YL   +N+K 
Sbjct: 34  EDVQNQKKVVYR----------GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKS 83

Query: 62  TEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP 121
                ++  +S   NF   + AFL D+Y GRY  +    I C LG  ++ LT   P   P
Sbjct: 84  ITAATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHP 143

Query: 122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS-E 180
            AC       C   +G Q+  L +  G + +G GGIR  +LAFGADQ       KS+S +
Sbjct: 144 AACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNP----KSESGK 199

Query: 181 GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
             + S+F+WY+ + + + ++++T +VY+Q N+ W +G  IPA +M
Sbjct: 200 RGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLM 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 16/223 (7%)

Query: 6   EEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGT 65
           E +K++ E  L      GG R + FI+ NE  E++ S G   N +LYL   ++M+  E  
Sbjct: 5   ENRKILPEKKL------GGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAF 58

Query: 66  NVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD 125
           NV + W   +NF P+LGA ++D+Y+GR+  I +  +  +LG++ + LT   P   P  C+
Sbjct: 59  NVYYLWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCN 118

Query: 126 YTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK- 184
               D C+     QL +L+L  G +S+G GGIR  S+ FG DQ ++      ++E  LK 
Sbjct: 119 NPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQ------RTEQGLKG 172

Query: 185 --SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
             S+F+WYY++++   + + T +VY+Q  + W +GF IP ++M
Sbjct: 173 VASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLM 214

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
356507909	568	PREDICTED: probable peptide transporter	0.973	0.385	0.609	2e-70
255550992	578	nitrate transporter, putative [Ricinus c	0.96	0.373	0.616	3e-69
225442569	584	PREDICTED: probable peptide transporter	0.955	0.368	0.56	3e-68
297743243	622	unnamed protein product [Vitis vinifera]	0.955	0.345	0.56	3e-68
224087732	605	predicted protein [Populus trichocarpa]	0.942	0.350	0.571	2e-65
297847594	607	proton-dependent oligopeptide transport	0.911	0.337	0.591	1e-64
224141759	564	predicted protein [Populus trichocarpa]	0.933	0.372	0.597	2e-64
224141757	568	predicted protein [Populus trichocarpa]	0.973	0.385	0.604	3e-64
15218183	607	putative peptide transporter [Arabidopsi	0.96	0.355	0.554	8e-64
224106908	606	predicted protein [Populus trichocarpa]	0.942	0.349	0.567	9e-64

>gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 165/228 (72%), Gaps = 9/228 (3%)

Query: 1   METCSEEKKMITEPLL--INKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYN 58
           ME  SE + +I EPLL   N N KGG RTLPFIIANEAFER+AS G MPNMILYL REY 
Sbjct: 1   MEGLSEMESVIEEPLLSKQNSNAKGGFRTLPFIIANEAFERLASLGLMPNMILYLTREYG 60

Query: 59  MKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPH 118
           M+    TN L  WSAASNF P +GA L+DSYVGRY+MI FG I  LLGMVLLWLTT+ P 
Sbjct: 61  MQTAGATNFLLLWSAASNFTPFVGAVLSDSYVGRYSMIAFGSIASLLGMVLLWLTTLIPL 120

Query: 119 ARPLACDYTLRDSC-ESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKS 177
           ++PL   +T  +SC  S T   L++L+ +F LMS+G GGIRSSSLAFG DQL K D    
Sbjct: 121 SKPLCNQFT--NSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGVDQLSKRD---- 174

Query: 178 KSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           K+ G  +SYFSWYY  V+ SS++ +T +VYIQDN+GW VGFGIP  +M
Sbjct: 175 KNAGIKESYFSWYYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILM 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/219 (61%), Positives = 165/219 (75%), Gaps = 3/219 (1%)

Query: 7   EKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTN 66
           E   I+E L I+ N KGG R LPFI+ N AFE++AS G  PNMILYL REY ++  +G N
Sbjct: 8   ENNTISEAL-ISSNQKGGFRVLPFIVVNMAFEKVASFGLTPNMILYLTREYRIEAAKGAN 66

Query: 67  VLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDY 126
           ++FFWSAA+NF PILGAF+ADSYVGR+ MIGFG I  LLG++LLWLT + P ARPL CD 
Sbjct: 67  IIFFWSAATNFTPILGAFIADSYVGRFRMIGFGSIASLLGIILLWLTAVIPQARPLPCDQ 126

Query: 127 TLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSY 186
              DSC+S T  QL+LLY +FGL+S+G GGIRSSSLAFGADQL  G  +K    G L+ +
Sbjct: 127 FTSDSCQSPTTLQLLLLYSSFGLLSIGAGGIRSSSLAFGADQLGMGQSLKRA--GILERF 184

Query: 187 FSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
            SWYYV VS S++VA+T IVYIQD +GWKVGFG+P  +M
Sbjct: 185 ISWYYVLVSVSAVVAMTCIVYIQDAMGWKVGFGVPVVLM 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442569|ref|XP_002279092.1| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 170/225 (75%), Gaps = 10/225 (4%)

Query: 1   METCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMK 60
           +E  SE++KM       ++  KGG+ T+PFIIANEAFER+AS G +PNMILYL ++Y++ 
Sbjct: 3   VEANSEQRKM-------SQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLG 55

Query: 61  ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHAR 120
           + +GTN+LF WSAA+NFLP++GAFL+DSY+GR+  IG G IT LLGM+LLWLT + P  +
Sbjct: 56  VAKGTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTK 115

Query: 121 PLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSE 180
           P  CD  L  SC++ T +Q +LLY +F LMS+G GG+R  SLAFGADQL+K D    K+E
Sbjct: 116 PPHCD-LLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRD--NPKNE 172

Query: 181 GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
             L+S+FSWYY S + S ++A+T IVYIQ +LGW+VGFG+PA +M
Sbjct: 173 RVLESFFSWYYASAALSVVIALTGIVYIQVHLGWRVGFGVPAILM 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 170/225 (75%), Gaps = 10/225 (4%)

Query: 1   METCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMK 60
           +E  SE++KM       ++  KGG+ T+PFIIANEAFER+AS G +PNMILYL ++Y++ 
Sbjct: 3   VEANSEQRKM-------SQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLG 55

Query: 61  ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHAR 120
           + +GTN+LF WSAA+NFLP++GAFL+DSY+GR+  IG G IT LLGM+LLWLT + P  +
Sbjct: 56  VAKGTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTK 115

Query: 121 PLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSE 180
           P  CD  L  SC++ T +Q +LLY +F LMS+G GG+R  SLAFGADQL+K D    K+E
Sbjct: 116 PPHCD-LLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDN--PKNE 172

Query: 181 GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
             L+S+FSWYY S + S ++A+T IVYIQ +LGW+VGFG+PA +M
Sbjct: 173 RVLESFFSWYYASAALSVVIALTGIVYIQVHLGWRVGFGVPAILM 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/238 (57%), Positives = 157/238 (65%), Gaps = 26/238 (10%)

Query: 10  MITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLF 69
           MITEPLL   +PKGGIR L FIIANEA ER+AS G   NMILYL REY M    G  +LF
Sbjct: 1   MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58

Query: 70  FWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL----------------------GM 107
            +SAA NF+PI+GAFLAD+YVGRY MIGFGCI  LL                      GM
Sbjct: 59  LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118

Query: 108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAD 167
           VLLWLTTI P AR  +C     +    AT  QL+ LY   GLMS+G GGIRS SLAFGAD
Sbjct: 119 VLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178

Query: 168 QLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           QL K D +K    G L+S+FSWYYV+ SAS  +++T IVYIQD +GWKVGFG+P  +M
Sbjct: 179 QLSKRDSLKHA--GILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLM 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847594|ref|XP_002891678.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297337520|gb|EFH67937.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 154/208 (74%), Gaps = 3/208 (1%)

Query: 19  KNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFL 78
           K  KGGI T+PFIIANEAFE++AS G +PNMI+YL R+Y   + +GTNVLF WSAASNF 
Sbjct: 19  KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query: 79  PILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDS-CESATG 137
           P+LGAFL+DSY+GR+  I    ++  LGMVLLWLT + P  +P  CD T   S C SAT 
Sbjct: 79  PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSATA 138

Query: 138 SQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSAS 197
           SQL LLY AF L+S+G GGIR  SLAFGADQL+  +  K K+E  L+S+F WYY S + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKE--KPKNERILESFFGWYYASSAVA 196

Query: 198 SMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
            ++A T IVYIQ++LGWK+GFGIPA +M
Sbjct: 197 VLIAFTGIVYIQEHLGWKIGFGIPAVLM 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 156/216 (72%), Gaps = 6/216 (2%)

Query: 10  MITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLF 69
           MITEPLL   N KGGIRT+PFI+ANEAFER+AS G   NMI+YL REY M   +   +LF
Sbjct: 1   MITEPLL--SNGKGGIRTIPFILANEAFERLASFGLSTNMIMYLTREYGMDAAQAAQLLF 58

Query: 70  FWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLR 129
            +S+A+NF PIL A LADSYVGRY MIGFGC+  LLGMVLLWLTT FP AR   C +   
Sbjct: 59  LFSSATNFTPILXAVLADSYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARQPLCVH-FS 116

Query: 130 DSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW 189
            SC S +  QL+ LY AFG M++G GGIRSSSLAFGADQL     ++       +S+F W
Sbjct: 117 HSCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGADQLSITHNLQRAR--IRESFFRW 174

Query: 190 YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           YYV+V+AS  VA+T +VYIQ+N+GW VGFG+P  +M
Sbjct: 175 YYVTVTASVFVAMTCVVYIQENMGWMVGFGVPVVLM 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 166/225 (73%), Gaps = 6/225 (2%)

Query: 1   METCSEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMK 60
           M+  SE  +MITEPLL N+  KGGIRTLPFI+ANEAFE +A+ G  PN+ILYL REY + 
Sbjct: 1   MDCPSEHGQMITEPLLSNR--KGGIRTLPFILANEAFESLANYGLFPNLILYLTREYRID 58

Query: 61  ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHAR 120
             +G +VLF  S+A NF PILGAFLAD+YVGRY MIGFGC+  LLGMVLLWLTT FP AR
Sbjct: 59  AAKGAHVLFLLSSAINFTPILGAFLADTYVGRYRMIGFGCMASLLGMVLLWLTT-FPEAR 117

Query: 121 PLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSE 180
           P  C     D C+SAT  QL+LLY AF  +++G GGIRSSSLAFGADQL   + ++    
Sbjct: 118 PPPCVQFSYD-CKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGADQLGTSNSLEHAR- 175

Query: 181 GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
              +S+FSWYY  V+AS  + +TF+VYIQDN+GW VGFG+P  +M
Sbjct: 176 -IRESFFSWYYGIVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLM 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218183|ref|NP_175630.1| putative peptide transporter [Arabidopsis thaliana] gi|75186219|sp|Q9M817.1|PTR2X_ARATH RecName: Full=Probable peptide transporter At1g52190 gi|6850341|gb|AAF29404.1|AC022354_3 peptide transporter, putative [Arabidopsis thaliana] gi|332194645|gb|AEE32766.1| putative peptide transporter [Arabidopsis thaliana]

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 123/222 (55%), Positives = 159/222 (71%), Gaps = 6/222 (2%)

Query: 5   SEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG 64
           +E K++ T      K  KGGI T+PFIIANEAFE++AS G +PNMI+YL R+Y   + +G
Sbjct: 8   TEAKQIQTNE---GKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKG 64

Query: 65  TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC 124
           TNVLF WSAASNF P+LGAFL+DSY+GR+  I    ++  LGMVLLWLT + P  +P  C
Sbjct: 65  TNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPC 124

Query: 125 DYTLRDS-CESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL 183
           D T   S C S+T SQL LLY AF L+S+G GGIR  SLAFGADQL+  +    K+E  L
Sbjct: 125 DPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKE--NPKNERVL 182

Query: 184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           +S+F WYY S + + ++A T IVYIQ++LGWK+GFG+PA +M
Sbjct: 183 ESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLM 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 135/238 (56%), Positives = 155/238 (65%), Gaps = 26/238 (10%)

Query: 10  MITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLF 69
           MITEPLL   +PKGGIR L FIIANEA ER+AS G   NMILYL REY M    G  +LF
Sbjct: 1   MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58

Query: 70  FWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL----------------------GM 107
            +SAA NF+PI+GAFLAD+YVGRY MIGFGCI  LL                      GM
Sbjct: 59  LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118

Query: 108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAD 167
           VLLWLTTI P A   +C          AT  QL+ LY   GLMS+G GGIRS SLAFGAD
Sbjct: 119 VLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178

Query: 168 QLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
           QL K D +K    G L+S+FSWYYV+ SAS  +++T IVYIQD +GWKVGFG+P  +M
Sbjct: 179 QLSKRDSLKHA--GILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLM 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.911	0.337	0.490	8.5e-49
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.968	0.368	0.438	1.4e-46
TAIR|locus:2144281	481	AT5G11570 [Arabidopsis thalian	0.933	0.436	0.396	4.4e-36
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.937	0.354	0.35	1.2e-27
TAIR|locus:2196734	555	AT1G69860 [Arabidopsis thalian	0.955	0.387	0.310	2.5e-27
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.902	0.327	0.293	1.2e-24
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.875	0.335	0.318	1.3e-23
TAIR|locus:2147499	559	AT5G28470 [Arabidopsis thalian	0.902	0.363	0.328	6.3e-23
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.875	0.319	0.308	8.2e-23
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.92	0.359	0.282	8.8e-23

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 102/208 (49%), Positives = 128/208 (61%)

Query:    19 KNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFL 78
             K  KGGI T+PFIIANEAFE++AS G +PNMI+YL R+Y   + +GTNVLF WSAASNF 
Sbjct:    19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query:    79 PILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDS-CESATG 137
             P+LGAFL+DSY+GR+  I    ++  LGMVLLWLT + P  +P  CD T   S C S+T 
Sbjct:    79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query:   138 SQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALKXXXXXXXXXXXXX 197
             SQL LLY                  AFGADQL+  +    K+E  L+             
Sbjct:   139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKEN--PKNERVLESFFGWYYASSAVA 196

Query:   198 XXXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                  T IVYIQ++LGWK+GFG+PA +M
Sbjct:   197 VLIAFTGIVYIQEHLGWKIGFGVPAVLM 224

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 97/221 (43%), Positives = 132/221 (59%)

Query:     5 SEEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG 64
             +E K+ + +P+   +  KGG+ T+PFIIANE FE++AS G + NMILYL  +Y + + +G
Sbjct:     8 TESKETLQQPIT-RRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66

Query:    65 TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC 124
               VLF W AA+NF+P++GAFL+DSY+GR+  I    ++ LLGMV+LWLT + P  +P  C
Sbjct:    67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126

Query:   125 DYTLRDSCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALK 184
               T   +C SAT SQL LLY                  AFGADQL+  +    K+E  L+
Sbjct:   127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKEN--PKNERVLE 184

Query:   185 XXXXXXXXXXXXXXXXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                               T IVYIQD+LGWK+GFGIPA +M
Sbjct:   185 SFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILM 225

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 86/217 (39%), Positives = 119/217 (54%)

Query:    10 MITEPLLINKNP-KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVL 68
             M  E LL+ +   K GI T+PFI+A++A E++A  G +PNMIL+L  EY M   E  N+L
Sbjct:     1 MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60

Query:    69 FFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTL 128
             F WSAA+NF P++GAF+ADSY GR+ +IGFG    L GMVLLWLTTI    RP  CD  L
Sbjct:    61 FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTII---RP-ECD-KL 115

Query:   129 RDSCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALKXXXX 188
              + C+  T  + +LLY                  AF ADQL+     +  +  +L+    
Sbjct:   116 TNVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTS-SLETLFN 174

Query:   189 XXXXXXXXXXXXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                           + +V++Q   GW++GFG+  A M
Sbjct:   175 WYYFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAM 211

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 77/220 (35%), Positives = 110/220 (50%)

Query:     6 EEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGT 65
             EEK++   P   N+ PKGG+ T+PFI ANE  E++A  GF  NMI YL  + ++ +T+  
Sbjct:    12 EEKQLHGRP---NR-PKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAA 67

Query:    66 NVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD 125
             N L  ++  S+  P+LGAF+ADS+ GR+  I F  I   +GM LL ++ I P  RP  C 
Sbjct:    68 NTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK 127

Query:   126 YTLRDSCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALKX 185
                 + C  A  +QL +LY                  AFGADQ ++ D  ++        
Sbjct:   128 G--EEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW---N 182

Query:   186 XXXXXXXXXXXXXXXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                              T +V+IQDN+GW +G GIP   M
Sbjct:   183 YFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAM 222

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 2.5e-27, P = 2.5e-27
 Identities = 68/219 (31%), Positives = 107/219 (48%)

Query:     7 EKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTN 66
             EK   +  L   +    G + +P+II NE  ER+A+ G M N ++Y+ REY+M   +   
Sbjct:     4 EKGTSSSDLTTRQRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVT 63

Query:    67 VLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDY 126
             ++  WSA +NF PI+GAF++DSY G++  I FG I  LLGM++L  T++ P+ RP  C  
Sbjct:    64 LINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPCTA 123

Query:   127 T-LRDSCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALKX 185
               +   C   + SQL +L                    F  DQ +  D  +   EG+ + 
Sbjct:   124 DQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFD--DSTEEGREGS-RS 180

Query:   186 XXXXXXXXXXXXXXXXXTFIVYIQDNLGWKVGFGIPAAI 224
                              T ++Y+Q+N+ W +GF IP  +
Sbjct:   181 FFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVL 219

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/211 (29%), Positives = 100/211 (47%)

Query:    17 INKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASN 76
             + K P GG R + FI+ NE  ER+ S G + N ++YL + ++++  +  NV+  WS  +N
Sbjct:    48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106

Query:    77 FLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESAT 136
               P++GA+++D+YVGR+  I F     LLG++ + LT  FP   P +C+     SC    
Sbjct:   107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166

Query:   137 GSQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKG--DGIKSKSEGALKXXXXXXXXXX 194
               Q+ +L                    FG DQ ++   +G+K      +           
Sbjct:   167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-----VASFFNWYYMTF 221

Query:   195 XXXXXXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                     T +VYIQD + W +GF IP  +M
Sbjct:   222 TVVLIITQTVVVYIQDQVSWIIGFSIPTGLM 252

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 65/204 (31%), Positives = 90/204 (44%)

Query:    24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGA 83
             G + +PFII NE FE++   G   N+++YL   +NMK      V+  +   SNF  I+ A
Sbjct:    22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81

Query:    84 FLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLL 143
             FL DSY GRY  + F  I C LG V + LT +     P  C   +   C   +  Q+M L
Sbjct:    82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141

Query:   144 YXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEG--ALKXXXXXXXXXXXXXXXXX 201
                                 FGADQ +     K+K EG   ++                 
Sbjct:   142 AGAMVLLVIGAGGIRPCNLPFGADQFDP----KTK-EGKRGIESFFNWYFFTFTFAQMVS 196

Query:   202 XTFIVYIQDNLGWKVGFGIPAAIM 225
              T IVY+Q N+ W +G  IPA +M
Sbjct:   197 LTLIVYVQSNVSWSIGLAIPAILM 220

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 6.3e-23, P = 6.3e-23
 Identities = 68/207 (32%), Positives = 98/207 (47%)

Query:    19 KNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFL 78
             K  KGG R + +IIANE+FE++AS   + N+ +YL  +YN+      NV+  W  + N L
Sbjct:    15 KKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNIL 74

Query:    79 PILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGS 138
              + GAF++D+Y+GR+  +  G I   +GM +  LT   P  RP AC      S + A   
Sbjct:    75 TLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDACIDPSNCSNQPAKW- 133

Query:   139 QLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALKXXXXXXXXXXXXXX 198
             QL +L+                  AFGADQ    D    K +  L+              
Sbjct:   134 QLGVLFSGLGLLAIGAGGVRPCNIAFGADQF---DTSTKKGKAHLETFFNWWYFSFTVAL 190

Query:   199 XXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                 T +VYIQ N+ W +GF IP A +
Sbjct:   191 VIALTGVVYIQTNISWVIGFVIPTACL 217

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 8.2e-23, P = 8.2e-23
 Identities = 63/204 (30%), Positives = 91/204 (44%)

Query:    24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGA 83
             G + +PFII NE FE++   G + N+++YL   +N+K      ++  +S   NF   + A
Sbjct:    46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105

Query:    84 FLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDS-CESATGSQLML 142
             FL D+Y GRY  +    I C LG  ++ LT   P   P AC  T  DS C   +G Q+  
Sbjct:   106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACG-TAADSICNGPSGGQIAF 164

Query:   143 LYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKS-EGALKXXXXXXXXXXXXXXXXX 201
             L                   AFGADQ       KS+S +  +                  
Sbjct:   165 LLMGLGFLVVGAGGIRPCNLAFGADQFNP----KSESGKRGIDSFFNWYFFTFTFAQILS 220

Query:   202 XTFIVYIQDNLGWKVGFGIPAAIM 225
              T +VY+Q N+ W +G  IPA +M
Sbjct:   221 LTLVVYVQSNVSWTIGLTIPAVLM 244

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 8.8e-23, P = 8.8e-23
 Identities = 63/223 (28%), Positives = 102/223 (45%)

Query:     6 EEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGT 65
             E +K++ E  L      GG R + FI+ NE  E++ S G   N +LYL   ++M+  E  
Sbjct:     5 ENRKILPEKKL------GGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAF 58

Query:    66 NVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD 125
             NV + W   +NF P+LGA ++D+Y+GR+  I +  +  +LG++ + LT   P   P  C+
Sbjct:    59 NVYYLWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCN 118

Query:   126 YTLRDSCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGADQLEKGDGIKSKSEGALKX 185
                 D C+     QL +L+                   FG DQ ++      ++E  LK 
Sbjct:   119 NPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQ------RTEQGLKG 172

Query:   186 XXXXXX---XXXXXXXXXXXTFIVYIQDNLGWKVGFGIPAAIM 225
                                 T +VY+Q  + W +GF IP ++M
Sbjct:   173 VASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLM 214

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034361001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (622 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam00854	372	pfam00854, PTR2, POT family	4e-19
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-11
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-08
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	4e-05
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	2e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 22/130 (16%)

Query: 96  IGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGG 155
           I  G I   +G VLL L  I P   P                 Q+ L Y+   L++LG G
Sbjct: 4   ILLGSIIYAIGHVLLTLGAIPPSLSP----------------VQVALFYIGLYLIALGTG 47

Query: 156 GIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWK 215
           GI+ +  AFGADQ ++        +     +FSW+Y S++A S++A     Y+Q N+G+ 
Sbjct: 48  GIKPNVSAFGADQFDETQ------DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101

Query: 216 VGFGIPAAIM 225
           +GFG+PA  M
Sbjct: 102 LGFGLPAVGM 111

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 37/224 (16%)

Query: 6   EEKKMITEPLLINKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREY----NMKI 61
            E++  T  +     P+G    L  I   E +ER +  G    +ILYL  +         
Sbjct: 5   TEEENTTLEMKFFGQPRG----LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDE 60

Query: 62  TEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP 121
           T  T +   + +     PI+G +LAD  +G    I  G I   +G ++L ++++      
Sbjct: 61  THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS----- 115

Query: 122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG 181
                                LY+   L+ +G G  + +  +   +   K D  +     
Sbjct: 116 -----------------GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-- 156

Query: 182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM 225
                F+ +Y+ ++  S++A      +  N GW VGFG+ A  M
Sbjct: 157 -----FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGM 195

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 29/184 (15%)

Query: 49  MILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMV 108
           ++LYL           TN+   ++      P++GA +ADS++G++  I +  +  ++G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQ 168
           L  L  +     PL                 L L+ LA    +LG GGI+    AFG DQ
Sbjct: 70  LASLGAVPSLGHPLH--------------DALSLVGLALI--ALGTGGIKPCVSAFGGDQ 113

Query: 169 LEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG-------WKVGFGIP 221
            E+              +FS++Y +++A S+ +      ++ ++G       + + FG+P
Sbjct: 114 FEER------QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVP 167

Query: 222 AAIM 225
             +M
Sbjct: 168 GILM 171

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 32/202 (15%)

Query: 26  RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFF--WSAASNFLPILGA 83
           + L  +   E +ER +  G    + +YL ++  +  ++    + F  +SA    L  +G 
Sbjct: 10  KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGW 69

Query: 84  FLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLL 143
           +  D   G    +  G I  +LG  +L                        A      L+
Sbjct: 70  WFGDRVWGTKKTMVLGGIVLMLGHFML------------------------AMSIYPDLI 105

Query: 144 YLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVT 203
           +   G +++G G  +++  +      E+GD    + +G     F+ +Y+S++  S ++  
Sbjct: 106 FYGLGTIAVGSGLFKANPSSMVGKLYERGD--MPRRDGG----FTLFYMSINIGSFISPL 159

Query: 204 FIVYIQDNLGWKVGFGIPAAIM 225
               I +N G+ VGF + A  M
Sbjct: 160 LAGVIAENYGYHVGFNLAAVGM 181

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 30/200 (15%)

Query: 26  RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFL 85
           R + +++A + +E  +  G    +ILYL  +          +   + +     PILG FL
Sbjct: 9   RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68

Query: 86  ADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYL 145
           AD  +G    +  G +   +G V+L  + I P                         LYL
Sbjct: 69  ADKVLGNRMAVMLGALLMAIGHVVLGASEIHP-----------------------SFLYL 105

Query: 146 AFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI 205
           +  ++  G G  +S+      +  E  D    + +G     FS  Y + +  S++A    
Sbjct: 106 SLAIIVCGYGLFKSNVSCLLGELYEPTD---PRRDGG----FSLMYAAGNVGSIIAPIAC 158

Query: 206 VYIQDNLGWKVGFGIPAAIM 225
            Y Q+   W +GFG+ A  M
Sbjct: 159 GYAQEEYSWAMGFGLAAVGM 178

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.85
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.83
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.75
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.7
PRK11663	434	regulatory protein UhpC; Provisional	99.7
PRK10054	395	putative transporter; Provisional	99.7
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.69
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.68
PRK03545	390	putative arabinose transporter; Provisional	99.68
PRK05122	399	major facilitator superfamily transporter; Provisi	99.68
PRK10504	471	putative transporter; Provisional	99.68
PRK12382	392	putative transporter; Provisional	99.68
TIGR00891	405	2A0112 putative sialic acid transporter.	99.67
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.67
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.67
PRK12307	426	putative sialic acid transporter; Provisional	99.66
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.65
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.65
PRK03893	496	putative sialic acid transporter; Provisional	99.64
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.64
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.64
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.64
TIGR00895	398	2A0115 benzoate transport.	99.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.62
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.62
TIGR00900	365	2A0121 H+ Antiporter protein.	99.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
PRK10091	382	MFS transport protein AraJ; Provisional	99.6
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.6
PRK03699	394	putative transporter; Provisional	99.6
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.59
TIGR00893	399	2A0114 d-galactonate transporter.	99.59
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.59
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.59
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.59
PRK11043	401	putative transporter; Provisional	99.59
PLN00028	476	nitrate transmembrane transporter; Provisional	99.59
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.58
PRK09952	438	shikimate transporter; Provisional	99.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.57
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.57
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.56
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.56
PRK09874	408	drug efflux system protein MdtG; Provisional	99.56
PRK03633	381	putative MFS family transporter protein; Provision	99.56
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.55
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.55
TIGR00891	405	2A0112 putative sialic acid transporter.	99.55
PRK03699	394	putative transporter; Provisional	99.55
PRK09705	393	cynX putative cyanate transporter; Provisional	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.55
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
PRK09952	438	shikimate transporter; Provisional	99.54
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.54
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.54
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.54
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.53
PRK10133	438	L-fucose transporter; Provisional	99.53
PRK15075	434	citrate-proton symporter; Provisional	99.53
PRK10642	490	proline/glycine betaine transporter; Provisional	99.52
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.51
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.51
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.5
PRK15011	393	sugar efflux transporter B; Provisional	99.5
TIGR00893	399	2A0114 d-galactonate transporter.	99.5
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.49
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.49
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.48
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.47
PRK10489	417	enterobactin exporter EntS; Provisional	99.47
PRK09705	393	cynX putative cyanate transporter; Provisional	99.47
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.44
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.44
PRK09874	408	drug efflux system protein MdtG; Provisional	99.44
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.43
PRK15075	434	citrate-proton symporter; Provisional	99.43
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.43
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.42
PRK09528	420	lacY galactoside permease; Reviewed	99.42
TIGR00805	633	oat sodium-independent organic anion transporter.	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.41
PRK03633	381	putative MFS family transporter protein; Provision	99.4
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.4
TIGR00900	365	2A0121 H+ Antiporter protein.	99.4
PRK09528	420	lacY galactoside permease; Reviewed	99.4
PRK12382	392	putative transporter; Provisional	99.4
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.39
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.39
PRK11663	434	regulatory protein UhpC; Provisional	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.38
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.37
PRK10489	417	enterobactin exporter EntS; Provisional	99.36
TIGR00898	505	2A0119 cation transport protein.	99.36
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.35
TIGR00895	398	2A0115 benzoate transport.	99.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.34
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.33
PTZ00207	591	hypothetical protein; Provisional	99.33
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.31
PRK12307	426	putative sialic acid transporter; Provisional	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.31
PRK11010	491	ampG muropeptide transporter; Validated	99.31
KOG2532	466	consensus Permease of the major facilitator superf	99.3
PRK11010	491	ampG muropeptide transporter; Validated	99.3
KOG0254	513	consensus Predicted transporter (major facilitator	99.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.29
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.29
PRK10504	471	putative transporter; Provisional	99.29
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.29
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.29
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.28
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.28
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
TIGR00901	356	2A0125 AmpG-related permease.	99.27
PRK11902	402	ampG muropeptide transporter; Reviewed	99.27
PRK10091	382	MFS transport protein AraJ; Provisional	99.26
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.26
PF13347	428	MFS_2: MFS/sugar transport protein	99.26
PRK09848	448	glucuronide transporter; Provisional	99.26
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.25
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.24
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.23
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.22
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.21
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.2
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.19
PRK10133	438	L-fucose transporter; Provisional	99.18
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.18
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.17
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.16
TIGR00901	356	2A0125 AmpG-related permease.	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.13
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
PRK10054	395	putative transporter; Provisional	99.12
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.11
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.09
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.09
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.08
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.08
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.08
KOG2615	451	consensus Permease of the major facilitator superf	99.07
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.07
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.07
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.06
PRK09669	444	putative symporter YagG; Provisional	99.06
KOG2533	495	consensus Permease of the major facilitator superf	99.06
PRK09669	444	putative symporter YagG; Provisional	99.04
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.04
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.03
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.03
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.01
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.99
PRK10429	473	melibiose:sodium symporter; Provisional	98.98
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.96
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.96
KOG2532	466	consensus Permease of the major facilitator superf	98.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.92
PRK11043	401	putative transporter; Provisional	98.92
KOG0569	485	consensus Permease of the major facilitator superf	98.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.9
TIGR00898	505	2A0119 cation transport protein.	98.9
PRK11462	460	putative transporter; Provisional	98.89
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.89
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.85
COG2211	467	MelB Na+/melibiose symporter and related transport	98.84
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.84
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.81
PF13347	428	MFS_2: MFS/sugar transport protein	98.81
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.75
PRK11462	460	putative transporter; Provisional	98.74
KOG0569	485	consensus Permease of the major facilitator superf	98.7
PRK09848	448	glucuronide transporter; Provisional	98.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.69
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.61
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.58
COG2211	467	MelB Na+/melibiose symporter and related transport	98.55
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.47
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.46
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.41
PF12832	77	MFS_1_like: MFS_1 like family	98.39
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.39
COG0477	338	ProP Permeases of the major facilitator superfamil	98.38
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.36
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.34
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.18
KOG2533	495	consensus Permease of the major facilitator superf	98.16
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.12
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.09
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.09
TIGR00805	633	oat sodium-independent organic anion transporter.	98.0
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.89
KOG0254	513	consensus Predicted transporter (major facilitator	97.82
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.81
KOG3626	735	consensus Organic anion transporter [Secondary met	97.8
KOG2563	480	consensus Permease of the major facilitator superf	97.74
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.65
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.64
KOG0637	498	consensus Sucrose transporter and related proteins	97.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.39
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.38
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.38
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.35
KOG2615	451	consensus Permease of the major facilitator superf	97.33
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.24
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.06
KOG3762	618	consensus Predicted transporter [General function	96.95
PTZ00207	591	hypothetical protein; Provisional	96.84
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.84
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.68
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.48
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.43
PRK03612	521	spermidine synthase; Provisional	96.41
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.37
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.13
KOG3762	618	consensus Predicted transporter [General function	96.05
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.99
KOG2563	480	consensus Permease of the major facilitator superf	95.85
KOG3626	735	consensus Organic anion transporter [Secondary met	95.65
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.59
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.44
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.22
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.66
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.27
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.07
COG3202	509	ATP/ADP translocase [Energy production and convers	91.77
KOG3098	461	consensus Uncharacterized conserved protein [Funct	90.49
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.96
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	87.81
KOG3097	390	consensus Predicted membrane protein [Function unk	85.93
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.78
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	82.12

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.92  E-value=5.2e-25  Score=198.06  Aligned_cols=175  Identities=27%  Similarity=0.430  Sum_probs=162.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYN----MKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG   97 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~   97 (225)
                      -+|+|.++.++..+++|+++||++...+..|++.+++    +|++++......+.......++++||++||++|+||++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            4578999999999999999999999999999999888    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCc
Q 041538           98 FGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKS  177 (225)
Q Consensus        98 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~  177 (225)
                      .+.++..+|+++++...                      ......+++++.++++|.|..+++..+++.|++|++|++  
T Consensus        97 lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr--  152 (498)
T COG3104          97 LGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR--  152 (498)
T ss_pred             HHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc--
Confidence            99999999999998752                      123556999999999999999999999999999999864  


Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhccC
Q 041538          178 KSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAIM  225 (225)
Q Consensus       178 ~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~~~  225 (225)
                           |..+|+.+|.+.|+|+.++|.+++++.++.||+.+|.++++.|
T Consensus       153 -----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm  195 (498)
T COG3104         153 -----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGM  195 (498)
T ss_pred             -----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence                 8899999999999999999999999999999999999887653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.90  E-value=1e-22  Score=187.20  Aligned_cols=171  Identities=18%  Similarity=0.348  Sum_probs=153.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      ++|+|.++.++..++++++++|++..+++.|+++++|+++.++.++.+.+.....+.++++|+++||++||||++..+.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999993499999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ++.++.+++.+..+                       ....+++++.++++|.|...++..+++.|+||++++       
T Consensus        90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-------  139 (489)
T PRK10207         90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-------  139 (489)
T ss_pred             HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-------
Confidence            99999988887541                       123466788999999999999999999999998763       


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +|++.++++|.+.|+|+.+||.+++++.++.||++.|++.+
T Consensus       140 ~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~  180 (489)
T PRK10207        140 RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG  180 (489)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence            26888999999999999999999999999999999998764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.87  E-value=2.3e-21  Score=177.85  Aligned_cols=171  Identities=24%  Similarity=0.405  Sum_probs=148.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      +|+|.++.++..++++++.+|++..++|.|+++++|+++.+++.+...+.....++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++.+++....                       .....+++++.+..+|.|...++.+++++|+||++++       .
T Consensus        86 ~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-------~  135 (493)
T PRK15462         86 MAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-------R  135 (493)
T ss_pred             HHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-------c
Confidence            988887665322                       0122345556666778888888889999999998753       2


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |.++++++|...|+|+.++|.+++++.++.||+++|.+.++
T Consensus       136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            89999999999999999999999999988999999987654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.85  E-value=1.3e-20  Score=172.48  Aligned_cols=172  Identities=22%  Similarity=0.373  Sum_probs=152.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh--cCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCRE--YNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFG   99 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~   99 (225)
                      .+++|.++.+.+.++++++++|++.+++|.|++++  +|+++.+++.+.+.+.....++++++|+++||++||||++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            35667888888899999999999999999999987  9999999999999999999999999999999933999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccc
Q 041538          100 CITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS  179 (225)
Q Consensus       100 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~  179 (225)
                      .++..++..++.+..                        +...+++++.+.+++.|...++..++++|++|++++     
T Consensus        86 ~~~~~~g~~~~~~~~------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~-----  136 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM-----  136 (475)
T ss_pred             HHHHHHHHHHHHhcc------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc-----
Confidence            999999888777643                        234577788889999999999999999999997652     


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          180 EGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       180 ~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                       +.|+++++++|...|+|+.+||.+.+++.++.||++.|.+.++
T Consensus       137 -~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~  179 (475)
T TIGR00924       137 -PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV  179 (475)
T ss_pred             -ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence             2278889999999999999999999999998899999987654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.83  E-value=1.4e-19  Score=166.86  Aligned_cols=171  Identities=22%  Similarity=0.411  Sum_probs=146.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      +++|.++.+++.++++++.+|++..+++.|+++++|++++++.++...+.......++++|+++||++|||+++..+.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999988888877777777789999999933999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++..++.++.                       .....+++++.+.+++.|...+...+++.|++|++++       .
T Consensus        98 ~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-------~  147 (500)
T PRK09584         98 LAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-------R  147 (500)
T ss_pred             HHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-------h
Confidence            888887776643                       1234466778889999999889999999999997653       2


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |++.++++|...++|+.+||.+.+++.++.||++.|.+.++
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i  188 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV  188 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            66778899999999999999999999999999999987653

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.75  E-value=3e-17  Score=153.00  Aligned_cols=201  Identities=41%  Similarity=0.765  Sum_probs=176.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHH
Q 041538           21 PKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGC  100 (225)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~  100 (225)
                      +...|+....+++.+.+++.+++++..++..|++..+|.+..++...++.+.......++++++++|.++||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCccccc-cccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccc
Q 041538          101 ITCLLGMVLLWLTTIFPHARPLACDYT-LRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS  179 (225)
Q Consensus       101 ~~~~i~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~  179 (225)
                      ++..+|..++.+....+.+.++.|.+. ..+.|.........+++.++.+.++|.|+..++..++.+||++..++   ++
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~---~~  188 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDP---VE  188 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCc---ch
Confidence            999999999998888888777766211 22256555666778899999999999999999999999999995554   33


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhcc
Q 041538          180 EGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAI  224 (225)
Q Consensus       180 ~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~~  224 (225)
                      ++.+.+.|.|+|+..++|..++..+..+++++.||..+|.+..+.
T Consensus       189 ~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~  233 (571)
T KOG1237|consen  189 VKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVL  233 (571)
T ss_pred             hhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHH
Confidence            445679999999999999999999999999999999999887654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.70  E-value=3.4e-16  Score=140.61  Aligned_cols=166  Identities=13%  Similarity=0.040  Sum_probs=136.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      .+|+.++...+..+++....... ....+.+++++|+++++.+++.+.+.++..+++++.|+++||+ ||||++..+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            34555555555555555554444 4444578999999999999999999999999999999999998 999999999888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++..+..++.                        +...+++.+.+.|++.+...+....++.|.+|+++         
T Consensus        83 ~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------  129 (412)
T TIGR02332        83 WGIASTATMFAT------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF---------  129 (412)
T ss_pred             HHHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH---------
Confidence            888888877755                        35568889999999999988888889999999844         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheec------ccCcchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQD------NLGWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~------~~g~~~~f~~~~~  223 (225)
                      |++..+.++...++|..+++.+.+++.+      ..|||+.|.+.++
T Consensus       130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~  176 (412)
T TIGR02332       130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGF  176 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHH
Confidence            8999999999999999999999998753      3699999987653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.70  E-value=2e-16  Score=142.81  Aligned_cols=158  Identities=11%  Similarity=0.140  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHH
Q 041538           31 IIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLL  110 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l  110 (225)
                      .++..+......+.....+|.+.+ ++|+++.+.+++.+.+.+...+++++.|+++||+ |||+++.++.++..++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~  105 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILF  105 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHH
Confidence            333444444444455566665554 6999999999999999999999999999999998 99999999988888888777


Q ss_pred             HHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHH
Q 041538          111 WLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWY  190 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~  190 (225)
                      .+..                        +...+++.+++.+++.|...+....++.|++|+++         |++..+++
T Consensus       106 ~~~~------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---------rg~~~~~~  152 (434)
T PRK11663        106 GFSS------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE---------RGGWWAIW  152 (434)
T ss_pred             HHHh------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH---------HHHHHHHH
Confidence            6654                        34557777888888888888889999999999855         89999999


Q ss_pred             HHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          191 YVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       191 ~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +...++|+.++|.+.+++.+++||++.|.+.++
T Consensus       153 ~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i  185 (434)
T PRK11663        153 NTAHNVGGALIPLVVGAIALHYGWRYGMMIAGI  185 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            999999999999999999888999999987553

>PRK10054 putative transporter; Provisional

Probab=99.70  E-value=7.2e-16  Score=137.80  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=136.9

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      +|.++...+..++...+++...++++.|+++++|+++.+.+++.+...+...+.+++.|+++||+ ||||++..+.+...
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence            35677777788888889898999999999999999999999999999999999999999999997 99999998888887


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++..++.+.+                        +...+++.+.+.+.+.+...+.......|.+|+++         |+
T Consensus        85 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~  131 (395)
T PRK10054         85 SGFIAIPLVN------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS---------KT  131 (395)
T ss_pred             HHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH---------HH
Confidence            7777666654                        23445555666666666667778888899988744         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +.+++.+...++|..++|.+.+++.+ .||+..|.+.++
T Consensus       132 ~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~  169 (395)
T PRK10054        132 KIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAI  169 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHH
Confidence            99999999999999999999998875 699999886553

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.69  E-value=7e-16  Score=137.82  Aligned_cols=167  Identities=11%  Similarity=0.119  Sum_probs=138.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      |.+|+.+..+....+......|.....+|. +.+++|+++.+.++..+.......+++++.|+++||+ ||||.+..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHH
Confidence            446665555555545555555555666666 4558999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..++.++..+..                        +...+++.+++.|++.+...+...+++.|.+|+++        
T Consensus        94 ~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--------  141 (394)
T PRK10213         94 LLTLSCLLVSFAN------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT--------  141 (394)
T ss_pred             HHHHHHHHHHHHC------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--------
Confidence            9888877766543                        46678999999999999999999999999998755        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                       |+...+......++|..++|.+++++.+++||++.|++.++
T Consensus       142 -~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~  182 (394)
T PRK10213        142 -VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV  182 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence             89999999999999999999999999998999999987543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.68  E-value=1.1e-15  Score=132.05  Aligned_cols=157  Identities=21%  Similarity=0.300  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWL  112 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~  112 (225)
                      +..++...........+|.++.+++|.++.+.+++.+...+...+++++.|+++||+ ||||++..+.++..++.....+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence            345556666666666677688889999999999999999999999999999999997 9999999999988888544444


Q ss_pred             hhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 041538          113 TTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYV  192 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~  192 (225)
                      +.                        +...+++.+++.|++.+...+....++.|.+|+++         |++.++..+.
T Consensus        82 ~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~  128 (352)
T PF07690_consen   82 AS------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE---------RGRAFGILSA  128 (352)
T ss_dssp             HC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC---------HHHHHHHHHH
T ss_pred             hh------------------------hHHHHhhhccccccccccccccccccccccchhhh---------hhhccccccc
Confidence            32                        23378999999999999999999999999999965         8999999999


Q ss_pred             HHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          193 SVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       193 ~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ..++|..++|.+++++.++.+|++.|++.++
T Consensus       129 ~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen  129 GFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hhhhhhhcccchhhhhhhccccccccccccc
Confidence            9999999999999999988999999987654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.68  E-value=6.9e-16  Score=136.99  Aligned_cols=164  Identities=10%  Similarity=0.060  Sum_probs=133.1

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      |..++.+.+..+......+...+.+| .+.+++|.++.+.++..+.+.+...+++++.|+++||+ ||||++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            33344444444544444443333344 56778999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++.....+..                        +...+++.+.+.|++.+...+...+++.|.+|+++         |+
T Consensus        86 ~~~~~~~~~~------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~---------r~  132 (390)
T PRK03545         86 ASHVLSALAW------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK---------KA  132 (390)
T ss_pred             HHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh---------hh
Confidence            8887777654                        45668888999999988888888999999999855         88


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +..++.....++|..++|.+.+.+.++.||++.|++.++
T Consensus       133 ~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~  171 (390)
T PRK03545        133 QALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG  171 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence            999999999999999999999999888899999987654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.68  E-value=8.9e-16  Score=136.32  Aligned_cols=172  Identities=15%  Similarity=0.092  Sum_probs=140.9

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      +|.+....+..+..........+.+|.|+++++|.|+.+.+++.+...+...+++++.|+++||+ ||||++..+.+++.
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence            35566677788888888877888999999999999999999999999999999999999999998 99999999988877


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++...+.+......                ....+...+++.+++.|++.+...+.....+.|.+|+++         |+
T Consensus        93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~  147 (399)
T PRK05122         93 LSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH---------TG  147 (399)
T ss_pred             HHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh---------hc
Confidence            76665554321000                001134568888999999999988888888999998755         78


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +..++.....++|..+||.+++++.++.||++.+.+..
T Consensus       148 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  185 (399)
T PRK05122        148 RVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM  185 (399)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            88888888889999999999999988889998876543

>PRK10504 putative transporter; Provisional

Probab=99.68  E-value=9.2e-16  Score=139.30  Aligned_cols=161  Identities=12%  Similarity=0.066  Sum_probs=136.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++.....+.+.+++|.+.+ ++|.++.+.+++.+.+.+...++.++.|+++||+ ||||++..+.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence            45666667777777787788888888776 6999999999999999999999999999999998 999999988877777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.+...+..                        +...+++.+.+.|++.+...+.....+.|.+|+++         |++
T Consensus        88 ~~~~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~  134 (471)
T PRK10504         88 GSLFCALSG------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ---------YMA  134 (471)
T ss_pred             HHHHHHHhC------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH---------HHH
Confidence            776555433                        34567888999999999988889999999998744         888


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                      ..+..+...++|..+||.+.+++.++.||++.|.+.
T Consensus       135 ~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504        135 AMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            999999999999999999999999999999999864

>PRK12382 putative transporter; Provisional

Probab=99.68  E-value=1.3e-15  Score=135.14  Aligned_cols=170  Identities=15%  Similarity=0.154  Sum_probs=135.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +.++...+..++.........+.+|.|+++++|+|+.+.+++.+.+.+...+.+++.|+++||+ ||||.+..+.+.+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence            4555565666677777777788889999999999999999999999999999999999999998 999999998877766


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..........+.                ....+...+++.+.+.|++.+...+...+.+.|.+|+++         |++
T Consensus        94 ~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~  148 (392)
T PRK12382         94 AGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH---------SGK  148 (392)
T ss_pred             HHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---------cch
Confidence            5543322211110                011245678889999999998888888888899998755         788


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                      ..++.+.+.++|..++|.+++++.+..||++.+.+.
T Consensus       149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            888888889999999999999998888999876543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.67  E-value=2.2e-15  Score=132.65  Aligned_cols=166  Identities=13%  Similarity=0.133  Sum_probs=138.6

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      +.+|+.+....+..+...+..+...... +.+++++|+++.+.+++.+...+...++.++.|+++||+ ||||++..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            4566766666677777777766555544 456788999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..++..++.+..                        +...+++.+++.|++.+...+...+++.|.+|+++        
T Consensus        86 ~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--------  133 (405)
T TIGR00891        86 LFSAGTLACGFAP------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--------  133 (405)
T ss_pred             HHHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--------
Confidence            8888877766544                        35567888999999999999999999999999855        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccC--cchhhhhhh
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG--WKVGFGIPA  222 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g--~~~~f~~~~  222 (225)
                       |++..++.+...++|..+++.+.+.+.+..+  |++.|.+.+
T Consensus       134 -~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~  175 (405)
T TIGR00891       134 -RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISI  175 (405)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence             7889999999999999999999998877665  998887654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.67  E-value=5.9e-16  Score=146.52  Aligned_cols=163  Identities=24%  Similarity=0.500  Sum_probs=139.3

Q ss_pred             HHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 041538           40 MASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHA  119 (225)
Q Consensus        40 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~  119 (225)
                      ++||++...+..|+++.+|++.+++..+...+.....+.++++|+++|+++||+|++.++.+++.+|..++.+.. .+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence            368999999999999999999999999999999999999999999999999999999999999999998888754 1110


Q ss_pred             CCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhh
Q 041538          120 RPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSM  199 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  199 (225)
                                     .......+.++++.+.++|.|++.++..++..|+++++++      +.|.+.|.++|+++|+|+.
T Consensus        80 ---------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~------~~~~s~F~~fY~~iNiGSl  138 (654)
T TIGR00926        80 ---------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL------SLRSRFFSFFYFAINAGSL  138 (654)
T ss_pred             ---------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch------hHHHHHHHHHHHHHHHHHH
Confidence                           0012334577889999999999999999999999987543      4589999999999999999


Q ss_pred             hHHHhhhheecc-------cCcchhhhhhhcc
Q 041538          200 VAVTFIVYIQDN-------LGWKVGFGIPAAI  224 (225)
Q Consensus       200 ~g~~l~~~l~~~-------~g~~~~f~~~~~~  224 (225)
                      +++.+.+++.++       .+|..+|.+.+++
T Consensus       139 is~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~  170 (654)
T TIGR00926       139 ISTIITPILRGDVGCFGCQDCYPLAFGVPAIL  170 (654)
T ss_pred             HHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence            999999999744       3699999887764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.67  E-value=1.3e-15  Score=139.89  Aligned_cols=163  Identities=13%  Similarity=0.023  Sum_probs=135.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      ..+..+.+..+........+...+|.. .+++|.+.++.+|+.+.+.+...+..++.|+++||+ |||+++..+.+++.+
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~   83 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence            334444556666666665555555654 568999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.++..++.                        +...+++++.++|+|.+...+.....+.+.+++++        .|++
T Consensus        84 ~~~~~~~a~------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~--------~r~~  131 (495)
T PRK14995         84 ASLAAAFSP------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK--------QRNM  131 (495)
T ss_pred             HHHHHHHcC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--------HHHH
Confidence            988877654                        45678899999999999888877777878775433        2899


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ..+++....++|..+||.+++++.++.|||+.|++..
T Consensus       132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~  168 (495)
T PRK14995        132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINV  168 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence            9999999999999999999999999999999998643

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.66  E-value=2.4e-15  Score=134.51  Aligned_cols=165  Identities=15%  Similarity=0.188  Sum_probs=137.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      .+++.+....+..+.+.+..+.. .+..+++++++|.++.+.+++.+...+...+++++.|+++||+ |||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            34455555555555566655544 4444567789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++.....+..                        +...+++.+.+.|++.+...+....++.|.+|+++         
T Consensus        93 ~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---------  139 (426)
T PRK12307         93 YSVGTGLSGLAS------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---------  139 (426)
T ss_pred             HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH---------
Confidence            888887777654                        45668889999999999988999999999999855         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      |++..++.+.+.++|..+++.+.+.+.++.||++.|++..
T Consensus       140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            7888899999999999999999999888899999987643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.65  E-value=4.7e-15  Score=132.73  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMV  108 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~  108 (225)
                      .+.....++...+++.+.++++.|+++++|+|+.+.+.+.....+...+..+++|+++||+ ||||.+..+.+...++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            4556778888888888999999999999999999999999999999999999999999998 999999999988888887


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      .+...+                        +...+++.+.+.+++.+...+...+++.|.+|+++         |++..+
T Consensus        92 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~a~~  138 (400)
T PRK11646         92 TMAIAH------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ---------RGRFFS  138 (400)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHH
Confidence            766543                        34557788888998888888888899999998755         899999


Q ss_pred             HHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          189 WYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       189 ~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +.+...++|..+||.+++++. ..||++.|++.++
T Consensus       139 ~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~  172 (400)
T PRK11646        139 LLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAV  172 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence            999999999999999999998 6799999886553

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.65  E-value=3.3e-15  Score=131.01  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=134.4

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      +|.++.+....+..........+.+| .+++++|.++.+.+++.+...+...+++++.|+++||+ ||||.+..+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            34444444455555555555555554 45678999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++...+....                        +...+++.+++.+++.+...+...+++.|.+|+++         |+
T Consensus        82 ~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~  128 (385)
T TIGR00710        82 LSSLGLALSN------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE---------LS  128 (385)
T ss_pred             HHHHHHHHHc------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH---------HH
Confidence            8877776644                        35567888999999999988999999999999754         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +..+..+...++|..++|.+.+++.++.+|++.|.+.++
T Consensus       129 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  167 (385)
T TIGR00710       129 RIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL  167 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            999999999999999999999999888899998876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.65  E-value=4.1e-15  Score=132.21  Aligned_cols=166  Identities=15%  Similarity=0.076  Sum_probs=136.5

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      +.+|..+.......+.+....+......| .+.+++|+++.+.+++.+...++..+++++.|+++||+ ||||++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            34455555556677777776666555555 45568999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..++.+++.+..                        +...+++.+.+.|++.+...+...+++.|.+|+++        
T Consensus        89 ~~~~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------  136 (406)
T PRK11551         89 LFGLFSLATAQAW------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL--------  136 (406)
T ss_pred             HHHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH--------
Confidence            7777766655543                        35567788999999998888889999999999855        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                       |++..++.+...++|..+++.+.+.+.+..+|++.|++.+
T Consensus       137 -r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  176 (406)
T PRK11551        137 -RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG  176 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence             8999999999999999999999988888889999887654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.64  E-value=7.3e-15  Score=134.01  Aligned_cols=165  Identities=13%  Similarity=0.140  Sum_probs=136.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      .+|+.+..+.+..+...+..+... ...+.+.+++|+++.+.++..+...+...++.++.|+++||+ ||||.+..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            445555555555555555555444 444567789999999999999999999999999999999998 999999999888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++...+.+..                        +...+++.+.+.|++.+...+....++.|.+|+++         
T Consensus        95 ~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------  141 (496)
T PRK03893         95 FSVGTLACGFAP------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---------  141 (496)
T ss_pred             HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---------
Confidence            888887777654                        35568888999999988888889999999999854         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      |+...+.++...++|..++|.+.+++.++.+|++.|.+.+
T Consensus       142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~  181 (496)
T PRK03893        142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI  181 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            8888999999999999999999999999999999887643

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.64  E-value=3.3e-16  Score=140.06  Aligned_cols=166  Identities=14%  Similarity=0.161  Sum_probs=146.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      .++.+....+++++++..-|.+.. .-.-.++.+|.++++.+.+.+...+...+++|++|+++||+ .|++++.++..++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW  108 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW  108 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence            345566677788889988887655 44557889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++.+...+..                        ..+.+.+.|.+.|+|.+.+.+..+++++|.||...         |
T Consensus       109 ~~Av~~~~fs~------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---------R  155 (493)
T KOG1330|consen  109 TLAVFASGFSN------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---------R  155 (493)
T ss_pred             HHHHHHHHHHH------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh---------h
Confidence            98888877765                        45669999999999999999999999999999855         9


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhcc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAAI  224 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~~  224 (225)
                      ++.++++|+...+|+++|-..+..+.++.+ |||+|...+++
T Consensus       156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl  197 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVL  197 (493)
T ss_pred             hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHH
Confidence            999999999999999999999999988887 99999877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.64  E-value=5e-15  Score=134.34  Aligned_cols=160  Identities=15%  Similarity=0.163  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      +..+.+..+............+ +.+.+++|.++.+.+++.+.+.+...++.++.|+++||+ ||||.+..+.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAI-PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            3344445555555554444444 456668999999999999999999999999999999998 99999999999888888


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      +++....                        +...+++.+.+.|++.+...+...+++.|.+|+++         |++..
T Consensus        82 ~~~~~~~------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~  128 (485)
T TIGR00711        82 LLCGVAP------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK---------RGRAM  128 (485)
T ss_pred             HHHhCcC------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH---------HHHHH
Confidence            7766543                        45668889999999999999999999999999855         89999


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ++++....+|..++|.+.+++.++.||++.|++.+
T Consensus       129 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~  163 (485)
T TIGR00711       129 AIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV  163 (485)
T ss_pred             HHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence            99999999999999999999999999999987654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.64  E-value=9.6e-15  Score=131.77  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhcC---CchhHHHH---HHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           31 IIANEAFERMASTGFMPNMILYLCREYN---MKITEGTN---VLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~---~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      ..+..+++.+.... .+...+++.++++   .+..+.+.   +.....++..++++++|+++||+ ||||++..+.+++.
T Consensus        27 ~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~  104 (432)
T PRK10406         27 ASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMC  104 (432)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence            33456666666554 5666677888874   55554333   33444445558999999999998 99999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++.+...+..+...                .....+..+++.|+++|++.|...+....+++|.+|+++         |+
T Consensus       105 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---------rg  159 (432)
T PRK10406        105 FGSLVIACLPGYET----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR---------KG  159 (432)
T ss_pred             HHHHHHhhcCCchh----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc---------cc
Confidence            88888777542110                001234568889999999999999999999999999865         67


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhhee--------cccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQ--------DNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~--------~~~g~~~~f~~~~~  223 (225)
                      ...+..+...++|..+++.+...+.        +.+|||+.|++.++
T Consensus       160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~  206 (432)
T PRK10406        160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAV  206 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            7777777777777777776654442        25799999987654

>TIGR00895 2A0115 benzoate transport

Probab=99.63  E-value=7.1e-15  Score=128.80  Aligned_cols=163  Identities=14%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      ++.+.......+......+.. ....+++.+++|+++.+.+++.+...+...++.++.|+++||+ |||+.+..+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            344444444444444444433 3444556678999999999999999999999999999999998 99999999888887


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++..++.+..                        +...+++.+.+.+++.+...+...+++.|.+|+++         |+
T Consensus        94 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------r~  140 (398)
T TIGR00895        94 VFTLLCALAT------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---------RG  140 (398)
T ss_pred             HHHHHHHHcc------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh---------hc
Confidence            7776666543                        34557788899999999999999999999999755         78


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +..++.+...++|..+++.+.+++.+..||+..|.+.+
T Consensus       141 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  178 (398)
T TIGR00895       141 TAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG  178 (398)
T ss_pred             hhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence            88999999999999999999999988899998887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.62  E-value=1.2e-14  Score=129.01  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=132.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      +.+|.++.......+.....+...+.+|. +.+++|.|+.+.+++.+...+...+++++.|+++||+ ||||.+..+.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            45677776666666666655555555554 5568999999999999999999999999999999998 999999999888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++...+....                        +...+++.+.+.|++.+...+....+..|.+++++         
T Consensus        83 ~~~~~~~~~~~~------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------  129 (394)
T PRK11652         83 FILGTLVALFAH------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ---------  129 (394)
T ss_pred             HHHHHHHHHHHc------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH---------
Confidence            888777666543                        34567888899998888777777777888777644         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ++...+..+.+..++..++|.+.+++.++.||++.|++.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~  169 (394)
T PRK11652        130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL  169 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence            7778888888899999999999999988889999888754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.4e-14  Score=128.82  Aligned_cols=166  Identities=13%  Similarity=0.106  Sum_probs=147.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      ..+..++...+..|.....=+.....+|. +.+++|.|..++++.++.+..+..++.++...+.||+ .|||.++...++
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence            34455666666777766666666676666 4558999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ++++.++.+++.                        +..++.++|++.++..|..++...+...|+.|+++         
T Consensus        88 Fi~~n~l~alAp------------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---------  134 (394)
T COG2814          88 FIVSNLLSALAP------------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---------  134 (394)
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---------
Confidence            999999999877                        56779999999999999999999999999999977         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |+++.+....+.+++..+|..++.++.|.+|||..|+..+.
T Consensus       135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~  175 (394)
T COG2814         135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV  175 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHH
Confidence            89999999999999999999999999999999999987654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.61  E-value=6.5e-15  Score=127.57  Aligned_cols=161  Identities=14%  Similarity=0.069  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWL  112 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~  112 (225)
                      ...++...........+|.|.+ +++.++.+.+++.+...+...+++++.|+++||+ ||||++..+.++..++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHH
Confidence            4555555555556666677776 5799999999999999999999999999999998 9999999998887777766665


Q ss_pred             hhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 041538          113 TTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYV  192 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~  192 (225)
                      ....+                   +.+...+++.+.+.+++.+...+...+++.|.+|+++         |++..++.+.
T Consensus        84 ~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  135 (365)
T TIGR00900        84 VALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ---------LTQANSLSQA  135 (365)
T ss_pred             HHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HHHHHhHHHH
Confidence            44111                   1245678888999999999999999999999999854         8999999999


Q ss_pred             HHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          193 SVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       193 ~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ..++|..++|.+++++.++.||++.|++.++
T Consensus       136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  166 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDAV  166 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999888999998876543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.61  E-value=2.2e-14  Score=125.27  Aligned_cols=158  Identities=16%  Similarity=0.108  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+......+......+...+.+|.++++++|+|+.+.+++.+...+...+++++.|+++||+ ||||.+..+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            44555566666667777778888789999999999999999999999999999999999998 99999999999888888


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      +.+.+..                       .+...+++.+++.|++.+. .+...++++|.+|+++         |+...
T Consensus        82 ~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~---------r~~~~  128 (366)
T TIGR00886        82 LWAGLAV-----------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI---------QGTAL  128 (366)
T ss_pred             HHHHHHh-----------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh---------hhHHH
Confidence            7776543                       0345577788888988654 4567788999999855         78888


Q ss_pred             HHHHHHHhhhhhhHHHhhhheec----------ccCcchhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQD----------NLGWKVGFG  219 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~----------~~g~~~~f~  219 (225)
                      +++....++|..+++.+.+.+.+          +.+|++.|+
T Consensus       129 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~  170 (366)
T TIGR00886       129 GLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV  170 (366)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence            88877777777777777665543          347998883

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=2.6e-14  Score=122.63  Aligned_cols=158  Identities=18%  Similarity=0.305  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHH
Q 041538           31 IIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLL  110 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l  110 (225)
                      .....+......+......+.|.+ ++|.++.+.+++.....+...++.++.|+++||+ ||||.+..+.++..++...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHH
Confidence            344566777777777777777775 5699999999999999999999999999999998 99999999999888888877


Q ss_pred             HHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHH
Q 041538          111 WLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWY  190 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~  190 (225)
                      ....                        +...+++.+.+.+++.+...+...+++.|.+|+++         |++.++..
T Consensus        82 ~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  128 (352)
T cd06174          82 AFAS------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE---------RGRALGLF  128 (352)
T ss_pred             HHhc------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc---------hhhhhhHH
Confidence            7653                        35668888999999999999999999999999855         88999999


Q ss_pred             HHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          191 YVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       191 ~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +...++|..++|.+.+.+.++.+|++.|.+.++
T Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174         129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999988899998876553

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.60  E-value=1.9e-14  Score=127.67  Aligned_cols=163  Identities=12%  Similarity=0.230  Sum_probs=134.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++......+......+...+.+|. +++++|++.++.++..+....+..+++++.|+++||+ ||||++..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            34445555666666665666666655 5668999999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.+++.++.                        +...+++.+.+.|++.+...+....++.|.+|+++         |++
T Consensus        81 ~~~l~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------~~~  127 (382)
T PRK10091         81 GNAMFTLSS------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK---------VTA  127 (382)
T ss_pred             HHHHHHHhC------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH---------hhH
Confidence            888777654                        45668888999999988877778888888888744         777


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ..+......++|..++|.+.+++.+..||++.|.+.++
T Consensus       128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~  165 (382)
T PRK10091        128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV  165 (382)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence            88888888999999999999999888899999987654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.6e-15  Score=134.62  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHH---HHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNM---ILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l---~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +-+++..++...++|.+.-+.   .+++.++.++|++|.+.+.+.+.+.+.++..+.|.++||. +.|+.+.++.++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            445667777888888874443   5888989999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      ..+++.+..                        +..++.+..++.|..+|.-.|.+...++.+||+++         |++
T Consensus       107 ~nil~Gfs~------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e---------RG~  153 (448)
T COG2271         107 VNILFGFSP------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE---------RGT  153 (448)
T ss_pred             HHHHHhhhh------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc---------cCc
Confidence            998888765                        56778888899999999999999999999999977         899


Q ss_pred             HHHHHHHHHhhhhhhHHHhh--hheecccCcchhhhhhhcc
Q 041538          186 YFSWYYVSVSASSMVAVTFI--VYIQDNLGWKVGFGIPAAI  224 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~--~~l~~~~g~~~~f~~~~~~  224 (225)
                      ..++++.+.|+|+++.|.++  +++..+.+|+.+|+.++++
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgii  194 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGII  194 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            99999999999999999999  8998888999999988764

>PRK03699 putative transporter; Provisional

Probab=99.60  E-value=3.3e-14  Score=126.58  Aligned_cols=165  Identities=15%  Similarity=0.107  Sum_probs=131.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      ++|..+.+.+..++.....+.+-..+|. +.+++|+|+.+.+++.+...++..+++++.|+++||+ ||||++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            3455555555555565555555555555 5568999999999999999999999999999999998 9999999998888


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++..++.+..                        +...+++.+.+.+++.+...+...+.+.|.+|+++         |
T Consensus        83 ~i~~~l~~~~~------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---------r  129 (394)
T PRK03699         83 ILAVAGLMFSH------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---------R  129 (394)
T ss_pred             HHHHHHHHHcc------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch---------H
Confidence            88877776643                        45567888999999988888888899999998744         7


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhhee-cccCcchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQ-DNLGWKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~-~~~g~~~~f~~~~~  223 (225)
                      +...+..+...++|+.++|.+.+++. ++.||++.|...++
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~  170 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGL  170 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            88888878888899999999988765 45699999976543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=2.7e-14  Score=124.01  Aligned_cols=163  Identities=11%  Similarity=0.063  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+......+...........+.+.|.+ ++|.++.+.+.......+...+++++.|+++||+ |||+.+.++.+...++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence            333333444444444445566667754 6889999999999999999999999999999998 99999988888777777


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .++.....                      .....+.....+.+++.+...+..+.+..|.+|+++         |++..
T Consensus       285 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---------~~~~~  333 (377)
T TIGR00890       285 AAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN---------SAANY  333 (377)
T ss_pred             HHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh---------hhhHh
Confidence            66554330                      112223344556677777777777888999999865         79999


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++.+...++|..++|.+.+++.++.||++.|.+.++
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~  369 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGA  369 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Confidence            999999999999999999999999999999887654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.59  E-value=1.6e-14  Score=129.06  Aligned_cols=133  Identities=17%  Similarity=0.281  Sum_probs=113.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccch
Q 041538           59 MKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGS  138 (225)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      .+..+.+++.+.+.++..+++++.|+++||+ ||||++..+.++..++..+......                     ..
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~---------------------~~  125 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF---------------------AL  125 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc---------------------cc
Confidence            3489999999999999999999999999998 9999999999988888877755431                     11


Q ss_pred             hHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhh---hheecccCcc
Q 041538          139 QLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI---VYIQDNLGWK  215 (225)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~---~~l~~~~g~~  215 (225)
                      +...+++.+.+.|++.+...+....++.|.+|+++         |+...++++...++|..+++.+.   ....+..+|+
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~  196 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL---------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR  196 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh---------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence            23468889999999999998999999999999866         78889999999999999999999   7776778999


Q ss_pred             hhhhhhh
Q 041538          216 VGFGIPA  222 (225)
Q Consensus       216 ~~f~~~~  222 (225)
                      +.|++.+
T Consensus       197 ~~f~~~~  203 (481)
T TIGR00879       197 IPLGLQL  203 (481)
T ss_pred             HHHHHHH
Confidence            9988643

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=6.5e-14  Score=124.79  Aligned_cols=165  Identities=9%  Similarity=0.059  Sum_probs=116.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      ++|..+......+.....++....+.|.|+++++|+++.+.+.+.....+...++.+++|+++||+ ||||.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            444444443444444445555667899999999999999999888777777888899999999998 9999887766555


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .+....+....                        +...+...+.+.+++.+...+..+....|.+|+ +         |
T Consensus       293 ~~~~~~~~~~~------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~---------~  338 (393)
T PRK15011        293 VCFYAGMLMAH------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q---------A  338 (393)
T ss_pred             HHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C---------c
Confidence            44433322221                        233344455555555555555556677787774 3         5


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++..++++...++|..++|.+.|++.+++||+..|.+.++
T Consensus       339 g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~  378 (393)
T PRK15011        339 GSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV  378 (393)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            7778888888899999999999999998899988876543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.59  E-value=1.2e-14  Score=126.41  Aligned_cols=143  Identities=12%  Similarity=0.107  Sum_probs=125.6

Q ss_pred             HHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 041538           47 PNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDY  126 (225)
Q Consensus        47 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  126 (225)
                      ....+++++++|+++.+.+++.+...+...++.++.|+++||+ ||||.+..+.++..++...+.+..            
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------   80 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------   80 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence            3344558889999999999999999999999999999999998 999999999888888887777654            


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhh
Q 041538          127 TLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                                  +...+++.+.+.|++.+...+....++.|.+|+++         |++..++.+...++|..++|.+.+
T Consensus        81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE---------RATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH---------HHHHHHHHHHhchHHHHHHHHHHH
Confidence                        45668889999999999999999999999999855         899999999999999999999999


Q ss_pred             heecccCcchhhhhhhc
Q 041538          207 YIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       207 ~l~~~~g~~~~f~~~~~  223 (225)
                      ++.++.+|++.|.+.++
T Consensus       140 ~l~~~~~~~~~~~~~~~  156 (399)
T TIGR00893       140 WILIHFSWQWAFIIEGV  156 (399)
T ss_pred             HHHHhCCchHHHHHHHH
Confidence            98888899999876543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.59  E-value=3.4e-14  Score=126.71  Aligned_cols=150  Identities=18%  Similarity=0.148  Sum_probs=121.9

Q ss_pred             HHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041538           39 RMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPH  118 (225)
Q Consensus        39 ~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~  118 (225)
                      ........+.+|. +++++|.|+.+.++..+.+.++..+++++.|+++||+ ||||.+..+.+...++........    
T Consensus        26 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----   99 (406)
T PRK15402         26 YIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ----   99 (406)
T ss_pred             HhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc----
Confidence            3344444555554 5578999999999999999999999999999999998 999999999888887777666544    


Q ss_pred             CCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhh
Q 041538          119 ARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASS  198 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~  198 (225)
                                          +...+++.+.+.|++.+...+...+.+.|.+|+++         |.+..+..+....++.
T Consensus       100 --------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~  150 (406)
T PRK15402        100 --------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD---------AIKITALMANVALLAP  150 (406)
T ss_pred             --------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH---------HHHHHHHHHHHHHHHH
Confidence                                34557788899999888877888899999998755         6677777777778899


Q ss_pred             hhHHHhhhheecccCcchhhhhhhc
Q 041538          199 MVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       199 ~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      .++|.+.+++.++.+|++.|++.++
T Consensus       151 ~~g~~i~~~l~~~~~w~~~~~~~~~  175 (406)
T PRK15402        151 LLGPLVGAALIHVLPWRGMFVLFAA  175 (406)
T ss_pred             HHHHHHHHHHHHccCccHHHHHHHH
Confidence            9999999999888899999876543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.59  E-value=2.4e-14  Score=127.30  Aligned_cols=141  Identities=16%  Similarity=0.009  Sum_probs=112.0

Q ss_pred             HHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 041538           48 NMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYT  127 (225)
Q Consensus        48 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  127 (225)
                      ...+.+++++|+|+++.+++.+.+.+++.+++++.|+++||+ |||+++..+......+.. .....             
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-------------   76 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-------------   76 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-------------
Confidence            333456779999999999999999999999999999999998 999876655444433322 11211             


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhh
Q 041538          128 LRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVY  207 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~  207 (225)
                                .+...+++.|++.|++.+.. .......+|.+|+++         |++..++.+.+..+|..+++.+.++
T Consensus        77 ----------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~---------r~~a~~~~~~~~~lG~~l~~~~~~~  136 (368)
T TIGR00903        77 ----------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER---------RDLVISLLSFAMYLGIIFALAAGLK  136 (368)
T ss_pred             ----------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      14567999999999998864 455566689999744         8999999999999999999999999


Q ss_pred             eecccCcchhhhhhhc
Q 041538          208 IQDNLGWKVGFGIPAA  223 (225)
Q Consensus       208 l~~~~g~~~~f~~~~~  223 (225)
                      +.++.|||+.|.+.++
T Consensus       137 l~~~~gWr~~f~~~~~  152 (368)
T TIGR00903       137 IYTAGGLQLLIIPIAA  152 (368)
T ss_pred             HHHccchHHHHHHHHH
Confidence            9988999999977443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.59  E-value=3e-14  Score=128.15  Aligned_cols=143  Identities=17%  Similarity=0.156  Sum_probs=120.2

Q ss_pred             HHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 041538           46 MPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD  125 (225)
Q Consensus        46 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  125 (225)
                      .+.+|. +.+++|.+.++..+..+.+.++..+++++.|+++||+ ||||++..+.++..++.....++.           
T Consensus        36 ~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-----------  102 (413)
T PRK15403         36 QPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT-----------  102 (413)
T ss_pred             ccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC-----------
Confidence            344443 5678999999999999999999999999999999998 999999999888888877666544           


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhh
Q 041538          126 YTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI  205 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~  205 (225)
                                   +...++++++++|++.+...+.....+.|.+|+++         |++..+..+...+++..+||.++
T Consensus       103 -------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~lg  160 (413)
T PRK15403        103 -------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK---------GIKLMAIITSIVLVAPIIGPLSG  160 (413)
T ss_pred             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                         45568889999999887666666778889888755         78888888889999999999999


Q ss_pred             hheecccCcchhhhhhhc
Q 041538          206 VYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       206 ~~l~~~~g~~~~f~~~~~  223 (225)
                      +++.++.||++.|++.++
T Consensus       161 ~~l~~~~gw~~~f~~~~~  178 (413)
T PRK15403        161 AALMHFVHWKVLFAIIAV  178 (413)
T ss_pred             HHHHHhcCHHHHHHHHHH
Confidence            999888899999986543

>PRK11043 putative transporter; Provisional

Probab=99.59  E-value=5.6e-14  Score=124.98  Aligned_cols=151  Identities=15%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             HHHHHHhhHHHHHHH--HhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhh
Q 041538           38 ERMASTGFMPNMILY--LCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTI  115 (225)
Q Consensus        38 ~~~~~~~~~~~l~~y--l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~  115 (225)
                      ....+.....+.|.+  +++++|.++.+.++..+...+...+++++.|+++||+ ||||.+..+.++..++.....+.. 
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE-   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence            333444444445544  6678999999999999999999999999999999998 999999998888877776666543 


Q ss_pred             cCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHh
Q 041538          116 FPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVS  195 (225)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~  195 (225)
                                             +...+++.+.+.|++.+...+...+++.|.+|+++         +.+.++..+...+
T Consensus        93 -----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  140 (401)
T PRK11043         93 -----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK---------ANRVFATIMPLVA  140 (401)
T ss_pred             -----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHHHH
Confidence                                   34557778888888887777777888899998744         6677777777888


Q ss_pred             hhhhhHHHhhhheecccCcchhhhhhh
Q 041538          196 ASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       196 ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ++..++|.+.+++.++.||++.|.+.+
T Consensus       141 ~~~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043        141 LSPALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            999999999999999899999887654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.59  E-value=5.7e-14  Score=128.66  Aligned_cols=164  Identities=10%  Similarity=0.013  Sum_probs=120.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      +++.+.......+......+.+.+.+ +++++++|++..+.+++.+...++..++++++|+++||+ |||+++..+.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            44444444444455555555544443 466789999999999998888889999999999999998 9999999988888


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++.+++.+..                        +...+++.+++.|++.+... .....++|.+|+++         |
T Consensus       112 ~~~~~~~~~~~------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~---------r  157 (476)
T PLN00028        112 APAVFCMSLVS------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI---------V  157 (476)
T ss_pred             HHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh---------e
Confidence            77776666544                        34456777888888877644 34567889999855         7


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhhee----c-----ccCcchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQ----D-----NLGWKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~----~-----~~g~~~~f~~~~~  223 (225)
                      ++..+..+...++|+.+++.+.+.+.    +     ..|||+.|++.++
T Consensus       158 g~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~  206 (476)
T PLN00028        158 GTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGL  206 (476)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence            88888887777778777766665442    1     2589999987664

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.58  E-value=5.4e-14  Score=123.03  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHH-HHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFG-CITCLLGMVLLW  111 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~-~~~~~i~~~~l~  111 (225)
                      +..++...+.....+.+|.|+++++|.|+.+.+++.+...+...+.+++.|+++||+ ||||.+... .+...++..+..
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            356777777788889999999999999999999999999999999999999999998 999876654 444444545444


Q ss_pred             HhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHH
Q 041538          112 LTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYY  191 (225)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~  191 (225)
                      ++.                        +...+++.+.+.+.+.+...|...++..|..|+++|       .+....+..+
T Consensus        83 ~~~------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~  131 (375)
T TIGR00899        83 WNR------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGR-------EAVMFSSVMR  131 (375)
T ss_pred             hcc------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcch-------hhHHHHHHHH
Confidence            433                        344466666777666666777777788887765432       1333356677


Q ss_pred             HHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          192 VSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       192 ~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ...++|..++|.+.+++.++.||++.|++.++
T Consensus       132 ~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899       132 AQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             HHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            78899999999999999888899999987654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.57  E-value=9e-14  Score=125.89  Aligned_cols=173  Identities=15%  Similarity=0.109  Sum_probs=121.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhc--CCchhHHHHHH----HHHHHHHHHHHHHHHHHhHhhccchHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREY--NMKITEGTNVL----FFWSAASNFLPILGAFLADSYVGRYAMIGF   98 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~~~~~~~~~~----~~~~~~~~i~~~~~G~laDr~~Grr~~~~~   98 (225)
                      +|.+....+..+++.+.........+.+..+++  +.++.+.....    ....+...++.++.|+++||+ ||||++.+
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHH
Confidence            455555556667777766554445555666555  67766433211    233344567788899999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCcc
Q 041538           99 GCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSK  178 (225)
Q Consensus        99 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~  178 (225)
                      +.+++.++..+..++++.+..                .......+++.|.++|++.|...+....++.|.+|+++     
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-----  158 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTI----------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK-----  158 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHH----------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC-----
Confidence            999999988888876521100                00012357788999999999999999999999999865     


Q ss_pred             chhhHHHHHHHHHHHHhhhhhhHHHhhhhee--------cccCcchhhhhhhc
Q 041538          179 SEGALKSYFSWYYVSVSASSMVAVTFIVYIQ--------DNLGWKVGFGIPAA  223 (225)
Q Consensus       179 ~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~--------~~~g~~~~f~~~~~  223 (225)
                          |+...+..+.+..+|..+++.+..++.        +++|||..|.+.++
T Consensus       159 ----rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~  207 (438)
T PRK09952        159 ----KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIV  207 (438)
T ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHH
Confidence                677777777788888888776666543        35799999987654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.57  E-value=3.9e-14  Score=123.03  Aligned_cols=146  Identities=18%  Similarity=0.167  Sum_probs=120.0

Q ss_pred             HHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 041538           42 STGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP  121 (225)
Q Consensus        42 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~  121 (225)
                      .|.+ ..+.+++++++|+++.+.+++.+...+...+++++.|+++||+ ||||++..+.++..++...+.+..       
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-------   89 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD-------   89 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence            4444 3445677889999999999999999999999999999999998 999999999998888887777655       


Q ss_pred             CccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhH
Q 041538          122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVA  201 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g  201 (225)
                                       +...+++.+.+.|++.+...+.....+.+.+|+ +         |+...+......++|..++
T Consensus        90 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~g~~~~  142 (377)
T TIGR00890        90 -----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K---------RGLASGIIIGGYGLGSFIL  142 (377)
T ss_pred             -----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c---------cHHHHHHHHHhcchhHhHH
Confidence                             455678888899999887777777778887763 3         7888888888889998877


Q ss_pred             HHhhhheecccCcchhhhhhhc
Q 041538          202 VTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       202 ~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +.+.+.+.+..||++.|.+.++
T Consensus       143 ~~~~~~~~~~~~~~~~f~~~~~  164 (377)
T TIGR00890       143 SPLITSVINLEGVPAAFIYMGI  164 (377)
T ss_pred             HHHHHHHHhcccHHHHHHHHHH
Confidence            7777777677799999886554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.57  E-value=2.1e-14  Score=125.44  Aligned_cols=165  Identities=13%  Similarity=0.015  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      .++......++....++.+..++|.|+++++|.++.+.+.......+...++.++.|+++||+ |||+.+.....+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            355556667777777888889999999999999999999999999999999999999999998 9999877655544333


Q ss_pred             HHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHH
Q 041538          107 MVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSY  186 (225)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~  186 (225)
                      .........                    ...+...+.....+.+++.+...+...+++.|.+|+++         |+++
T Consensus       299 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~~~~  349 (394)
T TIGR00883       299 AVPLLMALL--------------------DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV---------RYTG  349 (394)
T ss_pred             HHHHHHHHh--------------------cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc---------eeeE
Confidence            221111110                    01123445556667777777778889999999999866         5666


Q ss_pred             HHHH-HHHHhhhhhhHHHhhhheecccC-cchhhhhh
Q 041538          187 FSWY-YVSVSASSMVAVTFIVYIQDNLG-WKVGFGIP  221 (225)
Q Consensus       187 ~~~~-~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~  221 (225)
                      .+.. +....+|+.++|.+.+++.++.| |+..++..
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence            6664 45567888899999999999888 77666544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.57  E-value=4.9e-15  Score=134.99  Aligned_cols=144  Identities=13%  Similarity=0.033  Sum_probs=117.6

Q ss_pred             HHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 041538           50 ILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLR  129 (225)
Q Consensus        50 ~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~  129 (225)
                      .+.+++++|++..+.+++.+.+...+.+++++.|+++||+ ||||++..+.++..++...+.....              
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------  116 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--------------  116 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence            3457789999999999999999999999999999999998 9999998888777766666554320              


Q ss_pred             cccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          130 DSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                           ...++...+++.+.+.|++.+...+....+++|.+|+++         |+...+++....++|..+++.+..++.
T Consensus       117 -----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---------rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        117 -----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK---------RGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             -----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc---------eeeeEEeeecccchhhhHHHHHHHHHH
Confidence                 012356778889999999999888999999999999966         788888888889999999998887765


Q ss_pred             ccc---Ccchhhhhhh
Q 041538          210 DNL---GWKVGFGIPA  222 (225)
Q Consensus       210 ~~~---g~~~~f~~~~  222 (225)
                      +..   +|+..|.+.+
T Consensus       183 ~~~~~~~~~~~f~~~g  198 (467)
T PRK09556        183 NYFFDGHVIGMFIFPS  198 (467)
T ss_pred             HhhccCcchhHHHHHH
Confidence            543   5877776544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.57  E-value=1.1e-13  Score=122.82  Aligned_cols=160  Identities=15%  Similarity=0.086  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      +....+..+....+.......+|. +.+++|.++.+.++..+.+.....+++++.|+++||+ ||||.+..+.+...++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            334444555555555555555555 4567999999999999999999999999999999998 99999999988888877


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .++....                        +...+++.+.+.+++.+...+...+++.|.+|+++         |++..
T Consensus        83 ~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---------r~~~~  129 (392)
T PRK10473         83 LLCSLAE------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR---------RAKVL  129 (392)
T ss_pred             HHHHHhC------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH---------HHHHH
Confidence            7666543                        34557778889999988888888999999998855         89999


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +..+...+++..++|.+.+++.+..||++.|++.+
T Consensus       130 ~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473        130 SLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence            99999999999999999998888889998887654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.56  E-value=1.3e-13  Score=125.68  Aligned_cols=165  Identities=11%  Similarity=0.009  Sum_probs=120.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++....+++...++|.|+++++|+++.+++.......++..++.+++|+++||+ ||||.+........+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4566666677777777788889999999999999999999999989999999999999999998 999877665443333


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..++.+..                      ..+....++.+.+.|+..............|.+|++.         |++
T Consensus       337 ~~~~~~~~~----------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~---------~g~  385 (467)
T PRK09556        337 IFTLGVYQH----------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA---------IGV  385 (467)
T ss_pred             HHHHHHHHh----------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh---------HHH
Confidence            322222211                      1123334455555554433222233456679998855         899


Q ss_pred             HHHHHHHHHhh-hhhhHHHhhhheec------------ccCcchhhhhhh
Q 041538          186 YFSWYYVSVSA-SSMVAVTFIVYIQD------------NLGWKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~~~~~i-g~~~g~~l~~~l~~------------~~g~~~~f~~~~  222 (225)
                      +.++.+...++ |+.++|.+.|++.|            ..||+..|.+..
T Consensus       386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~  435 (467)
T PRK09556        386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD  435 (467)
T ss_pred             HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence            99999998886 77999999999988            568999887654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.56  E-value=1.1e-13  Score=126.12  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=113.5

Q ss_pred             HHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 041538           51 LYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRD  130 (225)
Q Consensus        51 ~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ..+++++|.+.++.+++.+.+.....++.++.|+++||+ |||+.+..+.++..++.+++.+..                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            345679999999999999999998999999999999998 999999999888888777766654                


Q ss_pred             ccccccchhHHHHHH-HHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          131 SCESATGSQLMLLYL-AFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                              +...+++ .+++.|++.+...+....++.+.+| ++         |++..++.+...++|..++|.+.+++.
T Consensus       106 --------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~---------r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892       106 --------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR---------RPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             --------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh---------HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                    2333443 4577788888765666778888885 33         899999999999999999999999998


Q ss_pred             cccCcchhhhhhhc
Q 041538          210 DNLGWKVGFGIPAA  223 (225)
Q Consensus       210 ~~~g~~~~f~~~~~  223 (225)
                      +.+||++.|.+.++
T Consensus       168 ~~~gwr~~f~~~~~  181 (455)
T TIGR00892       168 ESFGWRGSFLILGG  181 (455)
T ss_pred             HHhChHHHHHHHHH
Confidence            98999999987654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.56  E-value=1.3e-13  Score=122.32  Aligned_cols=161  Identities=19%  Similarity=0.113  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHH-----HHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG-----TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      ......+..++....+....+.+|.|++ ++|.+..+.     +.+.+...+...++.++.|+++||+ ||||.+..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence            3445556677777777778888888886 578886653     6778888889999999999999998 99999999888


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ...++..++....                        +...+++.+++.+++.+ ..+.....+.|.+|+++        
T Consensus        93 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--------  139 (408)
T PRK09874         93 GMGIVMVLMGLAQ------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK--------  139 (408)
T ss_pred             HHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh--------
Confidence            8777776665543                        35567778888888755 45677788888888755        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                       |++..+..+...++|..++|.+.+.+.+..+|++.|++.++
T Consensus       140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  180 (408)
T PRK09874        140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS  180 (408)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence             78888898899999999999999999888899998876543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.56  E-value=1.4e-13  Score=122.03  Aligned_cols=151  Identities=9%  Similarity=0.004  Sum_probs=129.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++.......+.+.+|.|++ ++|.++.+.+++.+.+.++..+++++.|+++||+ ||||.+..+.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            45677777888888888888888888887 6799999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.....+..                        +...+++.+++.|++.+...+.....+.+..++++         |++
T Consensus        84 ~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------~~~  130 (381)
T PRK03633         84 GCAGLGLMV------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN---------RGR  130 (381)
T ss_pred             HHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHH
Confidence            877666544                        45668888999999998887777777778877644         889


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      ..+.++...++|..+||.+.+.+.+.
T Consensus       131 ~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        131 LLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999988765

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.55  E-value=1.9e-13  Score=124.16  Aligned_cols=138  Identities=11%  Similarity=0.030  Sum_probs=124.3

Q ss_pred             hHHHHHHHHhHhcCCchhH-HHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 041538           45 FMPNMILYLCREYNMKITE-GTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLA  123 (225)
Q Consensus        45 ~~~~l~~yl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~  123 (225)
                      ..++..+|+.+++|+++.+ .+.+...+..++.+..+++|+++||+ |.||++.++.+..++...++.++.         
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------  113 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------  113 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            3555667899999999999 99999999999999999999999998 999999999999999988888865         


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHH
Q 041538          124 CDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVT  203 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~  203 (225)
                                     +...+.+.+++.|++.|... +...++.+.+|+++         |++++++.+.+..+|.++++.
T Consensus       114 ---------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE---------R~ratsi~~sg~~vG~~Ia~~  168 (511)
T TIGR00806       114 ---------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR---------YQRAAAYSRAAVLLGVFLSSV  168 (511)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence                           46679999999999999988 89999999999855         899999999999999999999


Q ss_pred             hhhheecccCcchhh
Q 041538          204 FIVYIQDNLGWKVGF  218 (225)
Q Consensus       204 l~~~l~~~~g~~~~f  218 (225)
                      ++++ ...+||+.-+
T Consensus       169 L~ql-l~s~gWr~y~  182 (511)
T TIGR00806       169 LGQL-LVTLGWISYS  182 (511)
T ss_pred             HHHH-HHhcCchhHH
Confidence            9999 4567988654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.55  E-value=9.8e-14  Score=127.33  Aligned_cols=164  Identities=10%  Similarity=0.081  Sum_probs=116.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      +++.+.......++....+|++..++|.|+++.+|++..+.........++..++.++.|+++||+ |||+.+..+.+.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444344444556678889999999999999999998888887888888889999999999998 9999888777654


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++...+.....                     ..+...+++++.+.+++.+...+....+..+.+|++.         |
T Consensus       327 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~---------R  376 (490)
T PRK10642        327 FVLAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI---------R  376 (490)
T ss_pred             HHHHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc---------c
Confidence            433332222110                     1123445566666666655555667788889999866         7


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhh
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGF  218 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f  218 (225)
                      +++.+..+....+++.++|.+.+++.+..+ |+..+
T Consensus       377 g~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~  412 (490)
T PRK10642        377 YSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPA  412 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence            888887655566777899999998877654 55444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.55  E-value=4.5e-14  Score=128.15  Aligned_cols=145  Identities=12%  Similarity=0.068  Sum_probs=113.9

Q ss_pred             HHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 041538           48 NMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYT  127 (225)
Q Consensus        48 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  127 (225)
                      ...++++++ |+++.+.+++.+...+...+++++.|+++||+ |||+++..+.++.+++.+.+.+...            
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~------------  115 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW------------  115 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence            344567777 99999999999999999999999999999998 9999999998888888777766430            


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhh-hHHHhhh
Q 041538          128 LRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSM-VAVTFIV  206 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~g~~l~~  206 (225)
                              ...+...+++.+.+.+++.+...+.....+.|++|+++         |++..++++.+.++|+. .+|.+..
T Consensus       116 --------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~l~~~  178 (452)
T PRK11273        116 --------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGLPPLLFLL  178 (452)
T ss_pred             --------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH---------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence                    11235567777888899888888877888899998855         89999999999998874 4555433


Q ss_pred             heecccCcchhhhhhhc
Q 041538          207 YIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       207 ~l~~~~g~~~~f~~~~~  223 (225)
                      .+....||++.|++.++
T Consensus       179 ~~~~~~gw~~~f~i~~~  195 (452)
T PRK11273        179 GMAWFNDWHAALYMPAF  195 (452)
T ss_pred             HHHHhccHHHHHHHHHH
Confidence            33334489999987543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.55  E-value=2.1e-13  Score=120.06  Aligned_cols=157  Identities=12%  Similarity=0.083  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHh
Q 041538           34 NEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLT  113 (225)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~  113 (225)
                      ..............++|.|+++++|+++.+.+.+.....++..++.++.|+++||+ |||+.+..+.+...+....+...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~  324 (405)
T TIGR00891       246 LVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAI  324 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHh
Confidence            33334444556677889999999999999999999999999999999999999998 99999887766543322222211


Q ss_pred             hhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 041538          114 TIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVS  193 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~  193 (225)
                      .                       .+...+.+...+.++..+...+..+.++.|.+|+++         |++.++..+..
T Consensus       325 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~  372 (405)
T TIGR00891       325 G-----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ---------RAAGLGFTYQL  372 (405)
T ss_pred             C-----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch---------hHHHhhHHHHH
Confidence            1                       122334444445555555556677888999998855         89999999999


Q ss_pred             HhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538          194 VSASSMVAVTFIVYIQDNLG-WKVGFGIPAA  223 (225)
Q Consensus       194 ~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~  223 (225)
                      .++|+.++|.+.|++.++.| |+..|....+
T Consensus       373 ~~~g~~~g~~~~g~l~~~~g~~~~~~~~~~~  403 (405)
T TIGR00891       373 GNLGGALAPIIGALLAQRLDEYGTALASLSF  403 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchhHHhhcc
Confidence            99999999999999999998 8888776544

>PRK03699 putative transporter; Provisional

Probab=99.55  E-value=2.9e-13  Score=120.56  Aligned_cols=162  Identities=12%  Similarity=0.115  Sum_probs=120.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +.++...+..++....++++..++|.|+++++|+|+.+.+.+...+..+..++.++.|+++||+ ||||.+........+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            3445455555566666778889999999999999999999999999999999999999999998 999988877665555


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      ...++....                        +.....+...+.|++.+...+...+...+..|.+          ++.
T Consensus       284 ~~~~~~~~~------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----------~~~  329 (394)
T PRK03699        284 LMYLFVNTD------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA----------SPK  329 (394)
T ss_pred             HHHHHHHcC------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----------CHH
Confidence            444433222                        1223444455666666666676777777766642          234


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ..+..+...++|+.++|.+.|++.+..|++..|+..+
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~  366 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTAN  366 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhH
Confidence            4566777889999999999999999899998887554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.55  E-value=1.1e-13  Score=123.40  Aligned_cols=147  Identities=12%  Similarity=0.101  Sum_probs=123.9

Q ss_pred             HHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcC
Q 041538           38 ERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFP  117 (225)
Q Consensus        38 ~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~  117 (225)
                      .+..++...+.+| .+++++|+|.++.+++.+.+..+..+++++.|+++||+ ||||++..+.+++.++.....+++   
T Consensus        21 ~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~---   95 (393)
T PRK09705         21 MRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP---   95 (393)
T ss_pred             cchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc---
Confidence            3333455555555 46779999999999999999999999999999999998 999999999999999999888765   


Q ss_pred             CCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhh
Q 041538          118 HARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSAS  197 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig  197 (225)
                                           +...+++++++.|++.+...+..+.++.|.+| ++         |+...+.+..+.++|
T Consensus        96 ---------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~---------~~~~~g~~~~~~~~g  144 (393)
T PRK09705         96 ---------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR---------TPLVMGLWSAALMGG  144 (393)
T ss_pred             ---------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc---------chhHHHHHHHHHHHH
Confidence                                 34457888999999999988888899999886 34         788888888888999


Q ss_pred             hhhHHHhhhheeccc-Ccchhhhh
Q 041538          198 SMVAVTFIVYIQDNL-GWKVGFGI  220 (225)
Q Consensus       198 ~~~g~~l~~~l~~~~-g~~~~f~~  220 (225)
                      ..+++.+.+++.++. +|++.+..
T Consensus       145 ~~~g~~~~~~l~~~~~~w~~~~~~  168 (393)
T PRK09705        145 GGLGAAITPWLVQHSETWYQTLAW  168 (393)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999888775 89887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.55  E-value=6.8e-14  Score=134.18  Aligned_cols=144  Identities=13%  Similarity=0.041  Sum_probs=119.8

Q ss_pred             hHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 041538           45 FMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC  124 (225)
Q Consensus        45 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~  124 (225)
                      ......+.+++++++++.+.+++.+...++..++.+++|+++||+ |||+.+.++.++..++.++..++.          
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            344555677788999999999999999999999999999999998 999999999888888877777654          


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          125 DYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                                    +...+++.+++.|++.++..+....+++|.+|++.         |+...++......+|.++++.+
T Consensus       254 --------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~---------Rg~~~g~~~~~~~iG~ila~~l  310 (742)
T TIGR01299       254 --------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK---------RGEHLSWLCMFWMIGGIYAAAM  310 (742)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence                          35668889999999999999999999999999854         8998999888899999998887


Q ss_pred             hhheecc-------------cCcchhhhhhh
Q 041538          205 IVYIQDN-------------LGWKVGFGIPA  222 (225)
Q Consensus       205 ~~~l~~~-------------~g~~~~f~~~~  222 (225)
                      +.++..+             .+||+.|++.+
T Consensus       311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~  341 (742)
T TIGR01299       311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCA  341 (742)
T ss_pred             HHHHHHhccchhccccccccccHHHHHHHHH
Confidence            7655433             25777665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00897 2A0118 polyol permease family

Probab=99.54  E-value=2.3e-13  Score=121.58  Aligned_cols=163  Identities=12%  Similarity=0.140  Sum_probs=128.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      -+|.+....+..+......+....++++++ +++|.++++.++..+.+.+...++.++.|+++||+ ||||++..+.++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~   88 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLW   88 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHH
Confidence            346666677777777777777778888888 46899999999999999999999999999999998 9999999998888


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++..++.... .                   ...+...+++.+.+.|++.+...+.....+.+.+|+++         |
T Consensus        89 ~~~~~~~~~~~-~-------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---------~  139 (402)
T TIGR00897        89 CVGHAAFIVFG-L-------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---------L  139 (402)
T ss_pred             HHHHHHHHHHh-c-------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---------H
Confidence            77765443211 0                   01134556777888888887766667777888888754         8


Q ss_pred             HHHHHHHHHHHhhhh-hhHHHhhhheecccCcchh
Q 041538          184 KSYFSWYYVSVSASS-MVAVTFIVYIQDNLGWKVG  217 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~-~~g~~l~~~l~~~~g~~~~  217 (225)
                      ++..++++...++|. .++|.+.+++.+..||+..
T Consensus       140 g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~  174 (402)
T TIGR00897       140 SSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNT  174 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            999999999999986 5899999998888885433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=3.1e-13  Score=118.25  Aligned_cols=154  Identities=10%  Similarity=0.043  Sum_probs=115.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTT  114 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~  114 (225)
                      .+...........++|.|+++++|.++.+.+............+.+++|+++||+ ||||.+..+.+...+....+....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444566788999999999999999888777777778889999999998 999988877665544443333322


Q ss_pred             hcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHH
Q 041538          115 IFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSV  194 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~  194 (225)
                                              +...++....+.+++.+...+....+..|..|+ +         +++.++.++...
T Consensus       287 ------------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~  332 (375)
T TIGR00899       287 ------------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R---------AGAATTLYTNTG  332 (375)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h---------hhHHHHHHHHHH
Confidence                                    233455556667777777677777788887764 2         458888999999


Q ss_pred             hhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          195 SASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       195 ~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++|..++|.+.+++.+..||+..|.+.++
T Consensus       333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~  361 (375)
T TIGR00899       333 RVGWIIAGSVGGILAERWSYHAVYWFAIV  361 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            99999999999999998899988876654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.54  E-value=1.5e-13  Score=124.42  Aligned_cols=166  Identities=12%  Similarity=0.042  Sum_probs=117.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +.........++....+|...++.|.|+++++|++..+...+.........++.++.|+++||+ ||||.+..+.++..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~  328 (438)
T PRK09952        250 GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTL  328 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3333334456666777888899999999999999988766666666777788889999999998 999998877665554


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+.....                    .......+.....+.+++.+...+..+++.+|.+|++.         |++
T Consensus       329 ~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~---------r~t  379 (438)
T PRK09952        329 SAFPFFMALE--------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY---------RYS  379 (438)
T ss_pred             HHHHHHHHHH--------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch---------hHH
Confidence            4433332210                    01122333444555567767667778899999999855         788


Q ss_pred             HHHHHHH-HHhhhhhhHHHhhhheeccc--Ccchhhhhh
Q 041538          186 YFSWYYV-SVSASSMVAVTFIVYIQDNL--GWKVGFGIP  221 (225)
Q Consensus       186 ~~~~~~~-~~~ig~~~g~~l~~~l~~~~--g~~~~f~~~  221 (225)
                      +.++.+. +..++++++|.+.+++.+..  +|...+...
T Consensus       380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~  418 (438)
T PRK09952        380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYL  418 (438)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            8887554 45589999999999997744  366665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.54  E-value=1.3e-13  Score=125.15  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=113.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCcccccccccccccc
Q 041538           58 NMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIF-PHARPLACDYTLRDSCESAT  136 (225)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +.++.+.+++.+.+.++..+++++.|+++||+ ||||++..+.+++.++.....+.... ...             ....
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~-------------~~~~  116 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSI-------------GPDN  116 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccc-------------cccc
Confidence            88899999999999999999999999999998 99999999999888877766653200 000             0001


Q ss_pred             chhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee-------
Q 041538          137 GSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ-------  209 (225)
Q Consensus       137 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~-------  209 (225)
                      ......+++.+++.|++.|...+...++++|.+|+++         |+...+..+....+|..+++.+...+.       
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  187 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI---------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW  187 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            1234567899999999999999999999999999855         788888888888999888877665432       


Q ss_pred             -cccCcchhhhhhhc
Q 041538          210 -DNLGWKVGFGIPAA  223 (225)
Q Consensus       210 -~~~g~~~~f~~~~~  223 (225)
                       ++.|||+.|++.++
T Consensus       188 ~~~~gWr~~f~~~~~  202 (479)
T PRK10077        188 LNTDGWRYMFASEAI  202 (479)
T ss_pred             cccCChHHHHHHHHH
Confidence             45699999986543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.54  E-value=8.8e-14  Score=122.25  Aligned_cols=145  Identities=16%  Similarity=0.167  Sum_probs=124.6

Q ss_pred             HhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 041538           43 TGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPL  122 (225)
Q Consensus        43 ~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~  122 (225)
                      ....+.+|.+.+ ++|+++.+.+++.+...+...+++++.|+++||+ |||+.+..+.++..++..++.+..        
T Consensus         8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~--------   77 (377)
T PRK11102          8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ--------   77 (377)
T ss_pred             HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc--------
Confidence            344566676665 6899999999999999999999999999999998 999999999988888887777654        


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHH
Q 041538          123 ACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAV  202 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~  202 (225)
                                      +...+++.+.+.+++.+...+...+++.|.+|+++         |++..++.+...++|..++|
T Consensus        78 ----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~  132 (377)
T PRK11102         78 ----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE---------FSRMMSFVTLVMTIAPLLAP  132 (377)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence                            34557778889999988888889999999998755         89999999999999999999


Q ss_pred             HhhhheecccCcchhhhhhh
Q 041538          203 TFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       203 ~l~~~l~~~~g~~~~f~~~~  222 (225)
                      .+.+++.++.+|++.|++.+
T Consensus       133 ~~~~~l~~~~~~~~~~~~~~  152 (377)
T PRK11102        133 IIGGWLLVWFSWHAIFWVLA  152 (377)
T ss_pred             HHHHHHHHHcChHHHHHHHH
Confidence            99999988889999987654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.54  E-value=3.7e-14  Score=123.24  Aligned_cols=140  Identities=15%  Similarity=0.184  Sum_probs=121.4

Q ss_pred             HHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 041538           49 MILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTL  128 (225)
Q Consensus        49 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~  128 (225)
                      ..+++++++|+++++.+++.+...+...++.++.|+++||+ |||+.+..+.++..++.+++.+..              
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------------   81 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST--------------   81 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence            34578889999999999999999999999999999999998 999999999988888888777654              


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHH-Hhhhh
Q 041538          129 RDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAV-TFIVY  207 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~-~l~~~  207 (225)
                                +...+++.+.+.+++.+...+...+++.|.+|+++         |++..++.+...++|..++| .+.+.
T Consensus        82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~  142 (379)
T TIGR00881        82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE---------RGTWVSFWNCSHNVGGGLLPPLVLFG  142 (379)
T ss_pred             ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh---------heeeEeehhccchhHHHHHHHHHHHH
Confidence                      35568888999999999999999999999999855         78888888889999999999 56667


Q ss_pred             eecccCcchhhhhhh
Q 041538          208 IQDNLGWKVGFGIPA  222 (225)
Q Consensus       208 l~~~~g~~~~f~~~~  222 (225)
                      +.++.+|++.|.+.+
T Consensus       143 ~~~~~~~~~~~~~~~  157 (379)
T TIGR00881       143 IAELYSWHWVFIVPG  157 (379)
T ss_pred             HHhcCCchhHHHHHH
Confidence            777789999887655

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.53  E-value=7e-14  Score=124.20  Aligned_cols=168  Identities=16%  Similarity=0.181  Sum_probs=132.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-cchHHHHHHH-H
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYV-GRYAMIGFGC-I  101 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Grr~~~~~~~-~  101 (225)
                      ..|.+|.+.+..++....-|++..|.|.|+.++.|+|..++.+..+.+..+...+++++||++||++ |||....+.+ +
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            3477888999999999999999999999999999999999999999999999999999999999998 7776544433 3


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ...++.+.++.++                      ..+..+..+.+..+|+..-+.+-.......|..|++.        
T Consensus       330 ~i~~~~~~~w~~~----------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A--------  379 (448)
T COG2271         330 LITASLVLYWLAP----------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA--------  379 (448)
T ss_pred             HHHHHHHHHHcCC----------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh--------
Confidence            4444444444433                      2245666666677776655555566666778888744        


Q ss_pred             hHHHHHHHHHHHHhh-hhhhHHHhhhheecccCcchhhhhhh
Q 041538          182 ALKSYFSWYYVSVSA-SSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       182 ~r~~~~~~~~~~~~i-g~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                       -+++.++..+...+ |...+....+++.|++||...|.+..
T Consensus       380 -aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~  420 (448)
T COG2271         380 -AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLS  420 (448)
T ss_pred             -ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHH
Confidence             68888888777777 88889999999999999999887543

>PRK10133 L-fucose transporter; Provisional

Probab=99.53  E-value=4.8e-13  Score=121.43  Aligned_cols=153  Identities=13%  Similarity=0.069  Sum_probs=116.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      ....++...+..+...+.........|. +++++|.|+.+.++..+.+.++..+++++.|+++||+ ||||++..+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            3344444455555556655544555554 5899999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      +++.+++....                     ..++...+++++++.|+|.+...+..+.++.|..|+++         |
T Consensus       102 ~~~~~l~~~~~---------------------~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~---------~  151 (438)
T PRK10133        102 ALGAALFWPAA---------------------EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---------G  151 (438)
T ss_pred             HHHHHHHHHHH---------------------hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh---------H
Confidence            98887653221                     01246678899999999999999999999988644432         4


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                      ....+..+....+|..+||.+++.+
T Consensus       152 ~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        152 HFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777888888888876643

>PRK15075 citrate-proton symporter; Provisional

Probab=99.53  E-value=4.6e-13  Score=120.90  Aligned_cols=170  Identities=16%  Similarity=0.120  Sum_probs=118.7

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHH-HHHH-----HHHHHHHHHHHHHHhHhhccchHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNV-LFFW-----SAASNFLPILGAFLADSYVGRYAMIGF   98 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~G~laDr~~Grr~~~~~   98 (225)
                      ++......+..+++.+....+. ...+.+.++++.++.+.+.. .+..     .+...+++++.|+++||+ ||||.+..
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence            3444444556666666655444 44456777888877765433 2222     122246788999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCcc
Q 041538           99 GCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSK  178 (225)
Q Consensus        99 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~  178 (225)
                      +.++..++..++.++.+.+..                .......+++.+++.|++.+...+....+++|.+|+++     
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-----  150 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATI----------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-----  150 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHH----------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence            999998888888876521100                00012246888999999999988888999999999866     


Q ss_pred             chhhHHHHHHHHHHHHhhhhhhHHHhhhhe--------ecccCcchhhhhh
Q 041538          179 SEGALKSYFSWYYVSVSASSMVAVTFIVYI--------QDNLGWKVGFGIP  221 (225)
Q Consensus       179 ~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l--------~~~~g~~~~f~~~  221 (225)
                          |++..+++....++|..+++.+++.+        .+..|||+.|++.
T Consensus       151 ----rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~  197 (434)
T PRK15075        151 ----KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG  197 (434)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence                78888887777777777776666654        2467999999864

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.52  E-value=3.2e-13  Score=123.99  Aligned_cols=171  Identities=15%  Similarity=0.128  Sum_probs=122.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHH-HH-----HHHHHHHHHHHHHHHHHHHhHhhccchHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG-TN-----VLFFWSAASNFLPILGAFLADSYVGRYAMIGFG   99 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~-~~-----~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~   99 (225)
                      +.++...+..+++.+.+.. ..+..+++.++++.+.++. .+     +.+...++..+++++.|+++||+ ||||++.++
T Consensus        16 ~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   93 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence            4444555677777776554 5555567787876443221 11     23556677889999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccc
Q 041538          100 CITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS  179 (225)
Q Consensus       100 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~  179 (225)
                      .+++.++.++..++.+...+                ....+.++.+.++++|++.|+..+....+++|.+|+++      
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~----------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------  151 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATI----------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------  151 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHH----------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence            99999999888876521110                00012357889999999999999999999999999866      


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHhhhhee--------cccCcchhhhhhhc
Q 041538          180 EGALKSYFSWYYVSVSASSMVAVTFIVYIQ--------DNLGWKVGFGIPAA  223 (225)
Q Consensus       180 ~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~--------~~~g~~~~f~~~~~  223 (225)
                         |+...++...+..+|..+|+.+...+.        +++|||+.|++.++
T Consensus       152 ---Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~  200 (490)
T PRK10642        152 ---RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALP  200 (490)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHH
Confidence               677777777777777777765554332        25799999987553

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.51  E-value=1e-13  Score=125.24  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=116.1

Q ss_pred             HHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 041538           49 MILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTL  128 (225)
Q Consensus        49 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~  128 (225)
                      ..+++++ .|+++++.++..+.+.+...+++++.|+++||+ |||+.+..+.++..++...+......            
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence            3456665 599999999999999999999999999999998 99999998888777776665543200            


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhh-
Q 041538          129 RDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVY-  207 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~-  207 (225)
                              ..+...+++.+.+.+++.+...+.....+.|.+|+++         |++.+++++...++|+.+++.+.+. 
T Consensus       115 --------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~---------rg~~~~~~~~~~~~g~~~~~~l~~~~  177 (438)
T TIGR00712       115 --------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE---------RGTIVSIWNCAHNIGGGIPPLLVLLG  177 (438)
T ss_pred             --------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc---------chhHHHHHHHHHHhHhHHHHHHHHHH
Confidence                    1234556777888999988888888899999999866         8999999999999999999888775 


Q ss_pred             eecccCcchhhhhhhc
Q 041538          208 IQDNLGWKVGFGIPAA  223 (225)
Q Consensus       208 l~~~~g~~~~f~~~~~  223 (225)
                      +.++.+|+..|++.++
T Consensus       178 ~~~~~~w~~~f~~~~~  193 (438)
T TIGR00712       178 MAWFNDWHAALYFPAI  193 (438)
T ss_pred             HHHhhhhHHHHHHHHH
Confidence            4445699999987543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.51  E-value=5.5e-13  Score=120.06  Aligned_cols=149  Identities=12%  Similarity=0.117  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      ++......+...+.+ .+...+.+.+++++|+++.+.+++.+....+..++.++.|++.||+ ||||++..+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            333444444444444 4444444667889999999999999999999999999999999998 99999999999998888


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .++....                     ...+...+.+.+++.|+|.+...+..++++.+..|+++         |++..
T Consensus        83 ~l~~~~~---------------------~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---------~~~~~  132 (410)
T TIGR00885        83 FLFWPAA---------------------EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST---------ATRRL  132 (410)
T ss_pred             HHHHHHH---------------------hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH---------HHHHH
Confidence            7655432                     11245668888999999999999999999999887755         67777


Q ss_pred             HHHHHHHhhhhhhHHHhhhhe
Q 041538          188 SWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l  208 (225)
                      +..+...++|..++|.+.+.+
T Consensus       133 ~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885       133 NLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            788888899999999888766

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.51  E-value=9.7e-13  Score=112.84  Aligned_cols=159  Identities=21%  Similarity=0.248  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchH-HHHHHHHHHHHHHHH
Q 041538           31 IIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYA-MIGFGCITCLLGMVL  109 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-~~~~~~~~~~i~~~~  109 (225)
                      ..+..+...........+.+.+.++.+|.++.+.+.......+...++.++.|+++||+ |||+ .+..+..+..++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~  258 (352)
T cd06174         180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLL  258 (352)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Confidence            33345555666677788888999888899999999999999999999999999999998 9999 888888888887776


Q ss_pred             HHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH
Q 041538          110 LWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW  189 (225)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~  189 (225)
                      +....                        +....+....+.+++.+...+....+..|..|+++         |++.++.
T Consensus       259 ~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  305 (352)
T cd06174         259 LALAP------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA---------RGTASGL  305 (352)
T ss_pred             HHHhc------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH---------HHHHHHH
Confidence            66543                        24557778888999999999999999999999855         8999999


Q ss_pred             HHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          190 YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       190 ~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++...+++..++|.+.+++.+..+|+..|.+.++
T Consensus       306 ~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~  339 (352)
T cd06174         306 FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAA  339 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHH
Confidence            9999999999999999999988899988876654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.50  E-value=4.5e-13  Score=119.68  Aligned_cols=155  Identities=17%  Similarity=0.202  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+......++..++........+.. .+++|.++.+.+++.+.+.+...+..+++|+++||+ ||||++..+.++..++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence            3444455666665444444444444 568899999999999999999999999999999998 99999999999888777


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      +.+....                        +   .++.+.++|++.+...|...+++.|.+|+++         |+++.
T Consensus        83 ~~~~~~~------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~---------~~~a~  126 (393)
T PRK11195         83 LLMLFGI------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK---------LVKAN  126 (393)
T ss_pred             HHHHHHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---------HHHHH
Confidence            6655433                        1   2567788999999999999999999999855         89999


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                      ++.+...+++..+||.++|++.+. .|+..+.+.
T Consensus       127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~  159 (393)
T PRK11195        127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVC  159 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            999999999999999999998775 366555543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.50  E-value=1.3e-12  Score=116.46  Aligned_cols=162  Identities=14%  Similarity=0.142  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhHhhccchHHHH-HHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSA-ASNFLPILGAFLADSYVGRYAMIG-FGCITCLL  105 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~-~~~~~~~i  105 (225)
                      .+...+..++.......+.+.++.|+++++|.|+++.+...+.... ...+.++.+|+ +||+ ||||.++ .+.+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL   94 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence            4555566888888888889999999999999999999998766544 55555666666 9998 9998754 44444445


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHH-HHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLA-FGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +..+..++.                        +...+++. +.+.+.+ +...+....+..|..++++|       ..+
T Consensus        95 ~~~~~~~~~------------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~  142 (393)
T PRK15011         95 ACTLFAWNR------------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTGR-------EAV  142 (393)
T ss_pred             HHHHHHHhh------------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccc-------hHH
Confidence            555444433                        23333333 3333333 34567777777776655332       123


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ...+..+...++|..+||.+++++.++.||+..|+..++
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~  181 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAV  181 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence            445677888999999999999999988999999987654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.50  E-value=9e-13  Score=114.59  Aligned_cols=167  Identities=17%  Similarity=0.059  Sum_probs=119.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHH-HHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAM-IGFGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~-~~~~~~~~~  104 (225)
                      |.++...+..++.....+....+.|.|+++++|.++.+.+.......+...++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4455566677777778888889999999999999999999999999999999999999999998 98862 111111111


Q ss_pred             HHH---HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          105 LGM---VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       105 i~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ++.   .......  .                  .............+...+.+ ..+....+..|.+|+++        
T Consensus       294 ~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------  344 (399)
T TIGR00893       294 IAGLVLSLLMFAT--N------------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI--------  344 (399)
T ss_pred             HHHHHHHHHHHHh--c------------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH--------
Confidence            111   1111111  0                  01122222222233333333 67888999999999865        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA  223 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~  223 (225)
                       |++..++.+...++|..++|.+.+++.+..| |+..|.+.++
T Consensus       345 -~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~  386 (399)
T TIGR00893       345 -AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAA  386 (399)
T ss_pred             -HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHH
Confidence             8999999999999999999999999999888 8888876543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.49  E-value=8.8e-13  Score=120.33  Aligned_cols=153  Identities=12%  Similarity=-0.016  Sum_probs=114.7

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      +|.++...+..+.....-+.+.+..+...++++|+|++|.+++.++......+..++.|++.||+ |.||++.++.++..
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            36666655544444444444444344444558999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +....+.+....                   ...+...+++.+.+.|++ +...++....++++||+++         |+
T Consensus       112 i~~~~~~~a~~~-------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~---------rG  162 (462)
T PRK15034        112 IPCVWLGIAVQN-------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK---------QG  162 (462)
T ss_pred             HHHHHHHHHHcc-------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH---------hH
Confidence            888777764200                   012567788889999998 6678889999999999866         78


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVY  207 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~  207 (225)
                      +..+++...+++|..+++.+.+.
T Consensus       163 ~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        163 SALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            88888876677777666665554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.49  E-value=1.1e-12  Score=116.82  Aligned_cols=169  Identities=8%  Similarity=-0.036  Sum_probs=121.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+|......++.......+.+++|.|+++++|+++.+.+++.....+...+++++.|+++||+ ||||.+..+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4466677778888888888899999999999999999999999999999999999999999998 999999877665554


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..........+..                ........++..++.+++.+...+....+..|.-++           ++.
T Consensus        81 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~  133 (396)
T TIGR00882        81 LFAPFFIYVFGPLL----------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN-----------SNF  133 (396)
T ss_pred             HHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh-----------ccc
Confidence            44332221100000                001123345556777777777777776666553221           223


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      .++..+...++|..+||.+++.+.+ .+|+..|++.++
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~  170 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSG  170 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHH
Confidence            3455666789999999999998865 599999977654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.48  E-value=9e-13  Score=114.53  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=113.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH--HH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI--TC  103 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~--~~  103 (225)
                      |.++...+..++.....+.+..+.|.|+++++|+++.+.+.......+...++.++.|+++||..+||+.......  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            3445555566666666777888999999999999999999999999999999999999999986234443322211  11


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++...+....                      ..+.....+...+.+.......+....+..|.+|++.         |
T Consensus       296 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~  344 (379)
T TIGR00881       296 IVSLLVYWLNP----------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA---------A  344 (379)
T ss_pred             HHHHHHHhcCc----------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch---------h
Confidence            11111111100                      1122334444445555444445556677889998855         8


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccCcchhh
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGF  218 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f  218 (225)
                      ++..++++...++|+.++|.+.|++.++.||++.|
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999999998765

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.48  E-value=8.1e-13  Score=120.03  Aligned_cols=136  Identities=11%  Similarity=0.129  Sum_probs=118.4

Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccc
Q 041538           56 EYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESA  135 (225)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++++.+.+.+.+.+.+...++++++|+++||+ |||+.+..+.++..++..+..+..                     
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------------  127 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA---------------------  127 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH---------------------
Confidence            6889999999999999999999999999999998 999999999888877776654432                     


Q ss_pred             cchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheeccc-Cc
Q 041538          136 TGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNL-GW  214 (225)
Q Consensus       136 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~-g~  214 (225)
                       ..+...+++.+++.|++.+...+....++.|.+|+++         |++..++.+.+.++|..++|.+.+++.+.. ||
T Consensus       128 -~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw  197 (465)
T TIGR00894       128 -GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE---------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGW  197 (465)
T ss_pred             -HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence             1124558888999999999999999999999999855         899999999999999999999999998884 99


Q ss_pred             chhhhhhhc
Q 041538          215 KVGFGIPAA  223 (225)
Q Consensus       215 ~~~f~~~~~  223 (225)
                      ++.|.+.++
T Consensus       198 ~~~f~i~~~  206 (465)
T TIGR00894       198 PMIFYVFGI  206 (465)
T ss_pred             CeehhhhhH
Confidence            999987654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.47  E-value=1.5e-12  Score=119.74  Aligned_cols=157  Identities=12%  Similarity=-0.018  Sum_probs=116.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCRE----YNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFG   99 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~   99 (225)
                      +++.+.++.+..+...+....+....+..-.+.    .+.+..+.+++.....++..+++++.|+++||+ |||+.+..+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~   92 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH
Confidence            334444444455555555444443344322221    234556778899999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccc
Q 041538          100 CITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS  179 (225)
Q Consensus       100 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~  179 (225)
                      .++..++.++..++.+..                  ...+...+++.+++.|++.|...+..+.+++|.+|+++      
T Consensus        93 ~~~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------  148 (502)
T TIGR00887        93 LIIMIIATVASGLSPGSS------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------  148 (502)
T ss_pred             HHHHHHHHHHHHHccCcc------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------
Confidence            988888887777643100                  01135679999999999999999999999999999966      


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          180 EGALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       180 ~~~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                         |++..++.+....+|..+++.+..++
T Consensus       149 ---Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       149 ---RGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               89999999999999998888887644

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.47  E-value=1.9e-13  Score=122.46  Aligned_cols=162  Identities=17%  Similarity=0.113  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHH
Q 041538           32 IANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLW  111 (225)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~  111 (225)
                      ....++...........+|.+.+ +++.++.+.+++.+...+...+++++.|+++||+ ||||.+..+.++..++...+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~  100 (417)
T PRK10489         23 FIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLA  100 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHH
Confidence            33455555555555566666655 5677999999999999999999999999999998 999998888777766665544


Q ss_pred             HhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHH
Q 041538          112 LTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYY  191 (225)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~  191 (225)
                      ......                   ..+...+++.+++.+++.+...+...+.+.|.+|+++         |++..++.+
T Consensus       101 ~~~~~~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  152 (417)
T PRK10489        101 LNAFLP-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN---------LMQAGAITM  152 (417)
T ss_pred             HHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH---------HHHHHHHHH
Confidence            321000                   1234556777888888877777788888899988755         788888888


Q ss_pred             HHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          192 VSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       192 ~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ...++|..+||.+++++.+..||++.|.+.++
T Consensus       153 ~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        153 LTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            89999999999999999888899988876543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.47  E-value=2.7e-12  Score=114.58  Aligned_cols=162  Identities=12%  Similarity=0.030  Sum_probs=121.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +..+...+..++....+++...++|.|+++ +|++..+++.......++..++.++.|+++||+ |||+.+..+..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            334444445555667778889999999986 799999999999999999999999999999997 999998888777666


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+....                      . +....  ...+.+++.+...+.......+.+++++        .+++
T Consensus       283 ~~~~~~~~~----------------------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~--------~~g~  329 (393)
T PRK09705        283 GFCGFIWLP----------------------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA--------IAGK  329 (393)
T ss_pred             HHHHHHHcc----------------------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH--------HHHH
Confidence            655444322                      0 11111  1234567777777766666777776432        2889


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~  222 (225)
                      .++..+...++++.++|.+.|++.|+.| |...|.+.+
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~  367 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHA  367 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            9999999999999999999999999876 666666543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.45  E-value=3.9e-12  Score=110.59  Aligned_cols=161  Identities=10%  Similarity=0.056  Sum_probs=121.0

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh--cCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCRE--YNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      +|.++...+..++....-.++..|.+.|+.+.  +|+++.+++.....+.....++.++++++.||+ |+||.+.++.++
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence            34555555555554445567788999999854  799999999999999999999999999999998 999998888777


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      .+++..+.....                       ...  ...+..+.+++.+..+|...+...+.+|++..        
T Consensus       218 ~~~~~~l~~~~~-----------------------~~~--~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~--------  264 (310)
T TIGR01272       218 AVLLSIGAALTH-----------------------GYV--AMWFVLALGLFNSIMFPTIFSLALNALGRHTS--------  264 (310)
T ss_pred             HHHHHHHHHHcC-----------------------CHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--------
Confidence            766654443322                       111  22355578888888999988888888886442        


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +++  ++. ....+|+.+.|.+.|.+.|..|.+.+|++..
T Consensus       265 ~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       265 QGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             hhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            333  333 5677999999999999999889888887544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.44  E-value=1.7e-12  Score=118.38  Aligned_cols=144  Identities=17%  Similarity=0.169  Sum_probs=108.7

Q ss_pred             hhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 041538           44 GFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLA  123 (225)
Q Consensus        44 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~  123 (225)
                      ....++|.|+++++|+++.+.+.+.....++..++.+++|+++||+ |||+.+..+..+..++...+....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            4567899999989999999999999999999999999999999998 999988877655544443332211         


Q ss_pred             cccccccccccccchhHHHHHHHHHHH-HHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHH
Q 041538          124 CDYTLRDSCESATGSQLMLLYLAFGLM-SLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAV  202 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~  202 (225)
                                   ..+.........+. ..+.+ ..+..+.++.|.+|++.         |++.+++++...++|+.+||
T Consensus       363 -------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~g~~lgp  419 (496)
T PRK03893        363 -------------GANVWVLGLLLFFQQMLGQG-ISGLLPKLIGGYFDTEQ---------RAAGLGFTYNVGALGGALAP  419 (496)
T ss_pred             -------------ccHHHHHHHHHHHHHHHhcc-cchhhHHHHHhhCCHHH---------hhcccchhhhhhhHHHHHHH
Confidence                         11222233333332 23333 34567778889998755         89999999999999999999


Q ss_pred             HhhhheecccCcchhhhh
Q 041538          203 TFIVYIQDNLGWKVGFGI  220 (225)
Q Consensus       203 ~l~~~l~~~~g~~~~f~~  220 (225)
                      .+.|++.+++||+..+..
T Consensus       420 ~l~g~l~~~~g~~~~~~~  437 (496)
T PRK03893        420 ILGALIAQRLDLGTALAS  437 (496)
T ss_pred             HHHHHHhccCChHHHHHH
Confidence            999999999998877644

>TIGR00897 2A0118 polyol permease family

Probab=99.44  E-value=2.7e-12  Score=114.73  Aligned_cols=166  Identities=13%  Similarity=0.088  Sum_probs=118.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH-HHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG-FGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-~~~~~~~  104 (225)
                      |.++...+..++....+++..++.|.|++ ++|+++.+.+.+.....+...++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            44555556667777788888999999986 5899999999988888999999999999999997 9988764 2333333


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++...+......                   ..++....++...+.+++.+...+ ......|. ++++         |+
T Consensus       300 ~~~~~l~~~~~~-------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~---------~g  349 (402)
T TIGR00897       300 IFTLALYYIPQH-------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKH---------KG  349 (402)
T ss_pred             HHHHHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-Ccch---------hH
Confidence            332222221100                   011233445556666666665444 34555554 3333         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++.++++...+++..++|.+.+++.+.+||+..|++.++
T Consensus       350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~  388 (402)
T TIGR00897       350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            999999999999999999999999999999988876653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.44  E-value=2.1e-12  Score=114.46  Aligned_cols=155  Identities=13%  Similarity=0.056  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchh---HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHH
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKIT---EGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLW  111 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~  111 (225)
                      .+........+.++++.|.++..+....   ..+.+.....+...++.+..|+++||+ |||+.+..+.+...++.+.+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            3344444455667788888875443222   234445556667778888999999998 999999888776666555444


Q ss_pred             HhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHH
Q 041538          112 LTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYY  191 (225)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~  191 (225)
                      ...                        +...+++...+.+++.+...+.....+.+..|++.         |++.++.++
T Consensus       307 ~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~  353 (408)
T PRK09874        307 FVQ------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI---------AGRIFSYNQ  353 (408)
T ss_pred             Hhc------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc---------ceeeehHHH
Confidence            332                        23446667778888888888888888888777654         788888888


Q ss_pred             HHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          192 VSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       192 ~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ...++|..+||.+.|++.++.||+..|++.++
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~  385 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAG  385 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHH
Confidence            89999999999999999999999999987654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.43  E-value=3e-12  Score=113.85  Aligned_cols=152  Identities=11%  Similarity=-0.098  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWL  112 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~  112 (225)
                      ...+......+....++|.|+++ .|+++.+.+.......++..++.++.|+++||+ |||+.+..+.+...++...+..
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445566777888999875 699999999999999999999999999999998 9999888765555554443332


Q ss_pred             hhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 041538          113 TTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYV  192 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~  192 (225)
                      ..                        +...+.+...+.+++.+...+...++..|.+|+++         |++..++.+.
T Consensus       305 ~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~  351 (406)
T PRK11551        305 AP------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV---------RGTGVGAAVA  351 (406)
T ss_pred             cC------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh---------hhhhhhHHHH
Confidence            22                        22334445556666666667788889999999866         8999999999


Q ss_pred             HHhhhhhhHHHhhhheecccC-cchhhh
Q 041538          193 SVSASSMVAVTFIVYIQDNLG-WKVGFG  219 (225)
Q Consensus       193 ~~~ig~~~g~~l~~~l~~~~g-~~~~f~  219 (225)
                      ...+|..++|.+.|++.++.+ |...+.
T Consensus       352 ~~~~g~~~g~~~~g~l~~~~~~~~~~~~  379 (406)
T PRK11551        352 VGRLGSMAGPLLAGQLLALGRSTVGVIG  379 (406)
T ss_pred             hhhHHHHHHhhhHhhhhccCCchHHHHH
Confidence            999999999999999988754 444443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.43  E-value=1.7e-12  Score=117.21  Aligned_cols=153  Identities=10%  Similarity=0.009  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHH-HH
Q 041538           32 IANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMV-LL  110 (225)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~-~l  110 (225)
                      ....+.....++.+..+.|.|+++.+|++..+.++......+...++.+++|+++||+ ||||.+..+.....+... .+
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3344445666778889999999999999999999888888888999999999999998 999987776544332221 11


Q ss_pred             HHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHH
Q 041538          111 WLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWY  190 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~  190 (225)
                      ....  .                   ............+.+++.+...+....+..|.+|++.         |+++.++.
T Consensus       323 ~~~~--~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~---------rg~~~g~~  372 (434)
T PRK15075        323 SWLV--A-------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV---------RTAGFSLA  372 (434)
T ss_pred             HHHH--c-------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc---------cchheeHH
Confidence            1111  0                   0111222233334445555555666678899999866         77888876


Q ss_pred             HHHHh-hhhhhHHHhhhheecccCcc
Q 041538          191 YVSVS-ASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       191 ~~~~~-ig~~~g~~l~~~l~~~~g~~  215 (225)
                      +...+ +++.++|.+.+++.++.|+.
T Consensus       373 ~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        373 YSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            55444 45778999999999988853

>TIGR00889 2A0110 nucleoside transporter

Probab=99.43  E-value=2.2e-12  Score=116.30  Aligned_cols=163  Identities=9%  Similarity=0.018  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhHhcCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           30 FIIANEAFERMASTGFMPNMILYLCREYNMK--------ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      ...+..++..........+.+.|+++ .+.+        .++.+...++..+...++.++.|+++||+ |||+++..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~  289 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV  289 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            33344444444444455777888875 3443        35668888888888899999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..++..++.....                    .......+++...+.+++.+...+....++.|.+|+++        
T Consensus       290 ~~~v~~~l~~~~~~--------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~--------  341 (418)
T TIGR00889       290 AWALRFGFFAYGDP--------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI--------  341 (418)
T ss_pred             HHHHHHHHHHHcCc--------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--------
Confidence            88777665554220                    01123456667788888888777888889999999855        


Q ss_pred             hHHHHHHHHH-HHHhhhhhhHHHhhhheecc------cCcchhhhhhhc
Q 041538          182 ALKSYFSWYY-VSVSASSMVAVTFIVYIQDN------LGWKVGFGIPAA  223 (225)
Q Consensus       182 ~r~~~~~~~~-~~~~ig~~~g~~l~~~l~~~------~g~~~~f~~~~~  223 (225)
                       |++.+++.+ ...++|..+||.+.|++.++      +||+..|.+.++
T Consensus       342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~  389 (418)
T TIGR00889       342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAG  389 (418)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence             899999997 56789999999999999887      458888775543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.42  E-value=3.3e-12  Score=115.28  Aligned_cols=154  Identities=14%  Similarity=-0.051  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHH-h
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWL-T  113 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~-~  113 (225)
                      .+.....+|++.+|+|.|+++++|++..+.+....+......++.++.|+++||+ ||||.+....++..+....+.. .
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344667888999999999999999999998888887888888889999999997 9999887765544333322221 1


Q ss_pred             hhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 041538          114 TIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVS  193 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~  193 (225)
                      ..                     ..+.........+.....+...+..+.+..|.+|++.         |+++.++.|..
T Consensus       331 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~---------r~t~~g~~~~~  380 (432)
T PRK10406        331 QN---------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV---------RALGVGLSYAV  380 (432)
T ss_pred             Hc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc---------cchhhhHHHHH
Confidence            10                     0111111111121222222233456678899999966         79999988766


Q ss_pred             Hh-hhhhhHHHhhhheecccC-cchhhhh
Q 041538          194 VS-ASSMVAVTFIVYIQDNLG-WKVGFGI  220 (225)
Q Consensus       194 ~~-ig~~~g~~l~~~l~~~~g-~~~~f~~  220 (225)
                      .+ +++...|.+.+++. ..| |...+..
T Consensus       381 g~~~~g~~~p~~~~~l~-~~g~~~~~~~~  408 (432)
T PRK10406        381 ANALFGGSAEYVALSLK-SIGMETAFFWY  408 (432)
T ss_pred             HHHHHHhHHHHHHHHHH-HhCCCcHHHHH
Confidence            55 44556888888664 445 5444443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=5.5e-12  Score=114.51  Aligned_cols=166  Identities=14%  Similarity=0.135  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccc--hHHH-HHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGR--YAMI-GFGCIT  102 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr--r~~~-~~~~~~  102 (225)
                      +.++...+..++.....++...++|.|++++.|++..+++.+.....+...++.+++|+++||+ ++  |+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4455555666666677788889999999999999999999888888888999999999999997 53  3322 222222


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++...+.+..                      ..+....++...+.+............+..|.+|++.         
T Consensus       332 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------  380 (452)
T PRK11273        332 VTIATIVYWLNP----------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA---------  380 (452)
T ss_pred             HHHHHHHHHHhc----------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh---------
Confidence            333333222211                      0112223333334443322222233456678888855         


Q ss_pred             HHHHHHHHHHHHhhhhhh-HHHhhhheecccCcchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSASSMV-AVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~-g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |++++++.+...++|+.+ +|.+.|++.|+.||+..|.+.++
T Consensus       381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~  422 (452)
T PRK11273        381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  422 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHH
Confidence            899999998888888654 79999999999999999875543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.42  E-value=5.1e-12  Score=112.20  Aligned_cols=160  Identities=12%  Similarity=0.067  Sum_probs=130.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++....+....++.|.|+++ .|.++.+.+.+.....+...+..++.+++.||+ |+|+.+.++.+.+.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            555666666677777777888899999975 899999999999999999999999999999998 999999999998888


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      ....+...+                        +...++....+.++..+...+....++.+. |+++         |++
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~---------~~~  328 (382)
T TIGR00902       283 RWAIIGAIE------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE---------IAK  328 (382)
T ss_pred             HHHHHHhHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh---------HHH
Confidence            887776544                        455677788999999999888888888887 7644         677


Q ss_pred             HHHHHH-HHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          186 YFSWYY-VSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~-~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ..+.++ ....+|..++|.++|++.|+.|+ ..|...+
T Consensus       329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~  365 (382)
T TIGR00902       329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMA  365 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence            788775 46789999999999999999886 4454433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.42  E-value=2.8e-12  Score=115.02  Aligned_cols=169  Identities=8%  Similarity=-0.071  Sum_probs=110.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |..+...+..++...+++...++++.|+++++|+++.+.+.+.+...+...+++++.|+++||+ ||||++..+.....+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5566666777777787778899999999999999999999999999999999999999999998 999998876655544


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+......+                    ....-......+.++..+...........+..++..       +.++.
T Consensus        89 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~  141 (420)
T PRK09528         89 LFGPFFIYVFAP--------------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS-------RRSGF  141 (420)
T ss_pred             HHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH-------hhccc
Confidence            433222111000                    000001111222222222222222222223222111       11455


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      .++..+...++|..++|.+++++.+ .+|++.|++.++
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~  178 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSG  178 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHH
Confidence            5666777789999999999998876 488888876553

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.42  E-value=6.4e-13  Score=125.93  Aligned_cols=177  Identities=14%  Similarity=0.240  Sum_probs=131.6

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      +|.+........+....+.+......+-++++++++.++.+++.+.+.++..++.++.|+++||+ ||||.+.++.+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            34443444434444445555666666778899999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhhcCCC----------------CCCccccc----cc-c----cccccc--chhHHHHHHHHHHHHHhCccc
Q 041538          105 LGMVLLWLTTIFPHA----------------RPLACDYT----LR-D----SCESAT--GSQLMLLYLAFGLMSLGGGGI  157 (225)
Q Consensus       105 i~~~~l~~~~~~~~~----------------~~~~~~~~----~~-~----~~~~~~--~~~~~~~~~~~~l~g~g~g~~  157 (225)
                      ++.+++++...+..-                ..+.|..+    .+ +    .|....  .....++++++++.|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            999888765311100                01122100    00 0    111111  113456888999999999999


Q ss_pred             chhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          158 RSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       158 ~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      .+...+++.|.+|+++         |+...++++....+|..+|+.+++++.+.
T Consensus       190 ~~~~~~~i~d~~~~~~---------~~~~~~i~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       190 FPLGISYIDDFAKSKN---------SPLYIGILESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             hhcCchhhhccCCccc---------cHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            9999999999999866         79999999999999999999999987653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.41  E-value=1.7e-11  Score=108.84  Aligned_cols=161  Identities=10%  Similarity=-0.060  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      ++......++.....+...++++.|++++.|++..+.+.......+...++.++.|+++||+ |||+.+ .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            33344444455555566677888999988999999999999999999999999999999997 987654 3333333333


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      ..+....                       .+...+++..++.|++.+...+.....+.+..|+ +         |+++.
T Consensus       285 ~~l~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~---------~~~~~  331 (390)
T PRK03545        285 LLLLPAA-----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A---------TDVAM  331 (390)
T ss_pred             HHHHHHh-----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c---------HHHHH
Confidence            2222111                       1334556667777777766666667777776553 3         78888


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +.++...++|..+||.+.|++.++.|++..|...++
T Consensus       332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~  367 (390)
T PRK03545        332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAA  367 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence            888888999999999999999999999988876654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.40  E-value=8.1e-12  Score=110.66  Aligned_cols=146  Identities=16%  Similarity=0.189  Sum_probs=110.4

Q ss_pred             HHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 041538           40 MASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHA  119 (225)
Q Consensus        40 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~  119 (225)
                      ..+.....++|.|+++ .|.++++.+.......+...+++++.|+++||+ |||+.+..+.....++...+. ..     
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~-----  285 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ-----  285 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence            3444456678888875 699999999989999999999999999999998 999998887776666554332 11     


Q ss_pred             CCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhh
Q 041538          120 RPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSM  199 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  199 (225)
                                           ........+.+++.....|...+...|..|+++         ++...+.++...++|..
T Consensus       286 ---------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lG~~  335 (381)
T PRK03633        286 ---------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE---------LVAMNQALLLSYTVGSL  335 (381)
T ss_pred             ---------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH---------HHHHHHHHHHHHHHHHH
Confidence                                 112234455555555567888888888887744         56666777788899999


Q ss_pred             hHHHhhhheecccCcchhhhhhhc
Q 041538          200 VAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       200 ~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +||.+.|++.|+.||++.|.+.+.
T Consensus       336 igp~~~G~l~~~~g~~~~f~~~~~  359 (381)
T PRK03633        336 LGPSFTAMLMQNYSDNLLFIMIAS  359 (381)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHH
Confidence            999999999999999988876543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.40  E-value=4.9e-12  Score=121.48  Aligned_cols=120  Identities=12%  Similarity=0.047  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHH
Q 041538           67 VLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLA  146 (225)
Q Consensus        67 ~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      ...+..++..++.+++|+++||+ |||+++.++.++..++.+++.+..                        +...+++.
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~------------------------s~~~ll~~  654 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN------------------------SESAMIAL  654 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc------------------------cHHHHHHH
Confidence            34566678888999999999998 999999998888888777666543                        12234444


Q ss_pred             HHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          147 FGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       147 ~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                      +.+.+++.++..+...++++|++|++.         |++++++.+...++|+++||.+.+.+.+. +....|.+.
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~---------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~  719 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPSDK---------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFA  719 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHH
Confidence            556666666677888999999999954         99999999999999999999999977654 344455443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.40  E-value=1.4e-11  Score=106.72  Aligned_cols=155  Identities=14%  Similarity=0.085  Sum_probs=123.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhH-HHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFM-PNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      |.++......+.....+.... .+.|.|.++.+|.++.+.+.+.....++..++.++.+++.||+ |||+.+..+.....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            444555555555555555555 7778888888999999999999999999999999999999998 99998888766666


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++...+.+..                      + +...+++...+.+++.+...+....++.|..|+++         |+
T Consensus       289 ~~~~~~~~~~----------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g  336 (365)
T TIGR00900       289 LAILVVGLTP----------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL---------LG  336 (365)
T ss_pred             HHHHHHHhhc----------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HH
Confidence            6655554432                      1 24556677788888888888888999999999855         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccC
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLG  213 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g  213 (225)
                      +..+.++...+++..++|.+.|++.|+.|
T Consensus       337 ~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       337 RVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999988654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.40  E-value=1.5e-12  Score=116.72  Aligned_cols=150  Identities=7%  Similarity=0.010  Sum_probs=113.0

Q ss_pred             HHHHhhHHHHHHHHhHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhc
Q 041538           40 MASTGFMPNMILYLCREY---NMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIF  116 (225)
Q Consensus        40 ~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~  116 (225)
                      ..+.....+.|.|+.+.+   +.+..+.+.+.++..+...++.+++|+++||+ ||||.+..+.++..++..++.+..  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~--  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT--  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence            333344455777776543   56667778888888888889999999999998 999999888887777776666543  


Q ss_pred             CCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH-HHHHHh
Q 041538          117 PHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW-YYVSVS  195 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~-~~~~~~  195 (225)
                                            ++..++....+.+++.+...+....++.|.+|++.         +++..+. ++....
T Consensus       314 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~a~~~~~~~~~~~~  362 (420)
T PRK09528        314 ----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL---------SATIYLVGFQFAKQ  362 (420)
T ss_pred             ----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---------eeeeeeehHHHHHH
Confidence                                  33445666777777776666667788888888755         5555544 567788


Q ss_pred             hhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          196 ASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       196 ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +|..++|.+.|++.|..||+..|...++
T Consensus       363 lg~~ig~~~~G~l~~~~G~~~~f~~~~~  390 (420)
T PRK09528        363 LGAVFLSTLAGNLYDSIGFQGTYLILGG  390 (420)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence            9999999999999999999988886543

>PRK12382 putative transporter; Provisional

Probab=99.40  E-value=5.8e-12  Score=111.72  Aligned_cols=149  Identities=13%  Similarity=0.123  Sum_probs=115.0

Q ss_pred             HHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcC
Q 041538           38 ERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFP  117 (225)
Q Consensus        38 ~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~  117 (225)
                      ....+..+..+.+.|+++ .|++.  .+.......+...+++++.|++.||+ ||||.+..+..+..++..++....   
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---  300 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP---  300 (392)
T ss_pred             HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc---
Confidence            344555666777888875 46553  44555667777788999999999997 999999888877777766554432   


Q ss_pred             CCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhh
Q 041538          118 HARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSAS  197 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig  197 (225)
                                           +.........+.+++.+...+.......|.+|+++         |++.++.++...++|
T Consensus       301 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~g  350 (392)
T PRK12382        301 ---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV---------RGTALGGYAAFQDIA  350 (392)
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHH
Confidence                                 23345566777788888777778888888888744         899999999999999


Q ss_pred             hhhHHHhhhheecccCcchhhhhhhc
Q 041538          198 SMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       198 ~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ..++|.+.+++.++.||+..|.+.++
T Consensus       351 ~~ig~~~~g~l~~~~g~~~~~~~~~~  376 (392)
T PRK12382        351 YGVSGPLAGMLATSFGYPSVFLAGAI  376 (392)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            99999999999999999999887654

>TIGR00896 CynX cyanate transporter

Probab=99.39  E-value=2.4e-11  Score=106.37  Aligned_cols=153  Identities=12%  Similarity=0.023  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc-chHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVG-RYAMIGFGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-rr~~~~~~~~~~~  104 (225)
                      |..+...+...+....++....++|.|+++ .|+|..+.+.......+...++.++.|+++||+ + ||+.+..+.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~-~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV-KDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHH
Confidence            444444445555666777888899999985 699999999999999999999999999999997 5 4556666666676


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++.+.+.+..                      ....  . ....+.+++.+...+...+...+..+++++        ++
T Consensus       275 ~~~~~~~~~~----------------------~~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~--------~g  321 (355)
T TIGR00896       275 VGLCGLLFAP----------------------MHGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ--------AA  321 (355)
T ss_pred             HHHHHHHHhh----------------------hhHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH--------HH
Confidence            6666555433                      0111  1 134567888888877777776665554332        67


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccC
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLG  213 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g  213 (225)
                      ..++..+...+++..++|.+.|++.|+.|
T Consensus       322 ~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       322 ALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77888888888999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00896 CynX cyanate transporter

Probab=99.39  E-value=1.6e-12  Score=113.84  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=112.6

Q ss_pred             HHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 041538           46 MPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD  125 (225)
Q Consensus        46 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  125 (225)
                      .+.+ +.+++++|+|+++.+++.+...+...++.++.|+++||+ ||||++..+.+...++.... ...           
T Consensus        20 ~~~l-p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-----------   85 (355)
T TIGR00896        20 GPLL-PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-----------   85 (355)
T ss_pred             cccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc-----------
Confidence            3444 456779999999999999999999999999999999998 99999999887777666544 222           


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhh
Q 041538          126 YTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI  205 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~  205 (225)
                                   +...+++.+.+.+++.+...+..+..+.|.+|+ +         |++..+.++...++|..+++.+.
T Consensus        86 -------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        86 -------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R---------VGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h---------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                         345567888889988887777777888887753 3         78889999999999999999999


Q ss_pred             hheeccc--Ccchhhhhhh
Q 041538          206 VYIQDNL--GWKVGFGIPA  222 (225)
Q Consensus       206 ~~l~~~~--g~~~~f~~~~  222 (225)
                      +.+.++.  +|+..|...+
T Consensus       143 ~~l~~~~~~~w~~~f~~~~  161 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWA  161 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHH
Confidence            9887665  3888776543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.39  E-value=7.4e-12  Score=113.13  Aligned_cols=166  Identities=8%  Similarity=0.025  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccc-hHHH-HHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGR-YAMI-GFGCITCL  104 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~~~-~~~~~~~~  104 (225)
                      .++...+..+.....++++.+++|.|+++++|++..+++.......++..++.+++|+++||+.+| |+.. ....+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            344444455555666677888999999888999999999999999999999999999999997222 2222 22222222


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +..+.+....   .                  . +...........+++.............|.+|+++         |+
T Consensus       324 ~~~~~~~~~~---~------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g  372 (434)
T PRK11663        324 LSVGSLWLMP---F------------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA---------AG  372 (434)
T ss_pred             HHHHHHHHcc---c------------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh---------HH
Confidence            2222222111   0                  0 11122222233333222222233445678777644         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +..++.+...++|..++|.+.+++.|+.||+..|...++
T Consensus       373 ~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~  411 (434)
T PRK11663        373 AATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISI  411 (434)
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHH
Confidence            999999999999999999999999999999998876654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=7.6e-12  Score=111.10  Aligned_cols=150  Identities=14%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             HHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhc
Q 041538           37 FERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIF  116 (225)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~  116 (225)
                      +....+.....+++.|+++ .|++  +.+.......++..++.++.|++.||+ ||||.+..+..+..++...+....  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--  300 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP--  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3344556667788888764 4653  345556677778888999999999997 999998888777777766555432  


Q ss_pred             CCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhh
Q 041538          117 PHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSA  196 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~i  196 (225)
                                            +....++..++.+++.+...+.......|.+|+++         |++..+.++...++
T Consensus       301 ----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~  349 (399)
T PRK05122        301 ----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN---------RGAALGAYSVFLDL  349 (399)
T ss_pred             ----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHH
Confidence                                  23445666778888888777777777788887744         89999999999999


Q ss_pred             hhhhHHHhhhheecccCcchhhhhhhc
Q 041538          197 SSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       197 g~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |..+++.+.|++.++.||+..|.+.++
T Consensus       350 g~~~~~~~~g~l~~~~g~~~~~~~~~~  376 (399)
T PRK05122        350 SLGITGPLAGLVASWFGYPSIFLAAAL  376 (399)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            999999999999998899988876543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.38  E-value=1.3e-11  Score=110.98  Aligned_cols=163  Identities=10%  Similarity=-0.043  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhH-hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHH-HHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCR-EYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMI-GFGCITCL  104 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~-~~~~~~~~  104 (225)
                      .++...+..++....++++.+++|.|+++ +.++++.+++.......+...++.+++|+++||+ +||+.. ....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            44555566677777888899999999987 3578888899999999999999999999999997 877753 33333333


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++..+ ....                      . +......+..+.+++.....+.......|.+|++.         |+
T Consensus       322 ~~~~~-~~~~----------------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~  368 (412)
T TIGR02332       322 AGWLL-ASAT----------------------D-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA---------RA  368 (412)
T ss_pred             HHHHH-HHhc----------------------C-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH---------HH
Confidence            33211 1111                      0 11112222223333332222333334455666644         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~  223 (225)
                      .++++.+...++|+.++|.+.+.+.+..| |+.+|++.++
T Consensus       369 ~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       369 IAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             HHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            99999999999999999999999998875 9988876543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.37  E-value=1.5e-11  Score=112.09  Aligned_cols=164  Identities=11%  Similarity=0.039  Sum_probs=124.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh-ccchHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY-VGRYAMIGFGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~-~Grr~~~~~~~~~~~  104 (225)
                      |.++......++....++....+++.|+++ +|+++.+++.+.+...++..++++++|+++||. .++|+...+......
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            445555556666677777788899999875 799999999999999999999999999999984 244444433332222


Q ss_pred             --HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          105 --LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       105 --i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                        ++..++....                        +...+++...+.|++.+...+...+++.|.+|+++         
T Consensus       320 ~~l~~ll~~~~~------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~---------  366 (455)
T TIGR00892       320 NGLTHLLCALAG------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR---------  366 (455)
T ss_pred             HHHHHHHHHHhc------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH---------
Confidence              2222222211                        34456677888889998888888999999998855         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheeccc-Ccchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNL-GWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~-g~~~~f~~~~~  223 (225)
                      +++..++++...++|..+||.++|++.+.. +|+..|++.++
T Consensus       367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~  408 (455)
T TIGR00892       367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS  408 (455)
T ss_pred             HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence            789999999999999999999999999887 59888887654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.36  E-value=6.3e-12  Score=112.57  Aligned_cols=147  Identities=8%  Similarity=-0.016  Sum_probs=117.0

Q ss_pred             HHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 041538           42 STGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP  121 (225)
Q Consensus        42 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~  121 (225)
                      .++...++|.|+++.+|+++.+.+++.....++..++.++.+++.||. ++++.+..+.+...++.+++.+..       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            345677889999988999999999999999999999999999999996 888888777766666655444322       


Q ss_pred             CccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhH
Q 041538          122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVA  201 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g  201 (225)
                                       +.....+...+.+++.+...+...+++.|..|++.         |++.+++++...++|..+|
T Consensus       311 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~g  364 (417)
T PRK10489        311 -----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM---------LGRINGLWTAQNVTGDAIG  364 (417)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHHHHHHhhhHhHH
Confidence                             23345556666777776666667788888888744         8999999999999999999


Q ss_pred             HHhhhheecccCcchhhhhhh
Q 041538          202 VTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       202 ~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      |.+.|++.+..|++..+...+
T Consensus       365 ~~l~G~l~~~~g~~~~~~~~~  385 (417)
T PRK10489        365 AALLGGLGAMMTPVASASASG  385 (417)
T ss_pred             HHHHHHHHHHhchhhHHHHHH
Confidence            999999999888877776544

>TIGR00898 2A0119 cation transport protein

Probab=99.36  E-value=4.4e-12  Score=116.16  Aligned_cols=135  Identities=14%  Similarity=0.150  Sum_probs=115.7

Q ss_pred             HHhHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 041538           52 YLCREYNMK---ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTL  128 (225)
Q Consensus        52 yl~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~  128 (225)
                      -+.+++|++   +.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            366789998   88999999999999999999999999997 999999999888888877776654              


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          129 RDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                                +...+++.+.+.|++.+...+....++.|.+|+++         |+...++......+|..++|.++.++
T Consensus       179 ----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       179 ----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ---------RAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             ----------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh---------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      45668889999999999999999999999999866         78888888888899999999887776


Q ss_pred             ecccCcchhhhhhhc
Q 041538          209 QDNLGWKVGFGIPAA  223 (225)
Q Consensus       209 ~~~~g~~~~f~~~~~  223 (225)
                      .+   |++.|.+.++
T Consensus       240 ~~---wr~~~~~~~i  251 (505)
T TIGR00898       240 PD---WRWLQLAVSL  251 (505)
T ss_pred             hH---HHHHHHHHHH
Confidence            53   8888876543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.35  E-value=2.2e-11  Score=110.50  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=123.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |..+...+..++....+++...++|.|+++.+|+++.+++.......+...++.++.|++.||+ |||+.+.++..+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4445555666677777788888999999999999999999999999999999999999999997 999998888877777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..++.+... +                   ..+.........+.+++.+...+.......+..|+++         |++
T Consensus       334 ~~~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~---------~g~  384 (485)
T TIGR00711       334 GFYWRAFTFT-P-------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK---------IAR  384 (485)
T ss_pred             HHHHHhccCC-C-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HhH
Confidence            7766553210 0                   1123345555777888888777667777777788755         899


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      +.+.++...++|+.+|+.+.+.+.++
T Consensus       385 ~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       385 GSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.35  E-value=2.5e-11  Score=106.25  Aligned_cols=145  Identities=13%  Similarity=0.011  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMV  108 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~  108 (225)
                      +...+..++....++....++| ++.+++|+++.+.+.......+...++.++.|+++||+ |||+.+.......... .
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~-~  329 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA-V  329 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH-H
Confidence            3334445556666677777777 66678899999999999999999999999999999998 9885544443333332 2


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      ++....                       .+....+....+.+++.+...+...+++.|.+|++.         |++..+
T Consensus       330 ~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g  377 (398)
T TIGR00895       330 LVGSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI---------RATGVG  377 (398)
T ss_pred             HHHHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---------HHHHHH
Confidence            222211                       123345666677888888888889999999999855         899999


Q ss_pred             HHHHHHhhhhhhHHHhhhhe
Q 041538          189 WYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       189 ~~~~~~~ig~~~g~~l~~~l  208 (225)
                      +.+....+|..+||.+.|++
T Consensus       378 ~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       378 WAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=3.1e-11  Score=107.15  Aligned_cols=168  Identities=14%  Similarity=0.037  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSA-ASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      ++......++.........++.+.|+++ .|+++++.+.+...... ...++.+++|++.||+ |+||.+..+.+...+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4444445555555556666777888875 79999999998877764 5566788999999998 9999988776655333


Q ss_pred             HHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHH
Q 041538          107 MVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSY  186 (225)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~  186 (225)
                      ..........+.                  .......+....+.+++.+...+.......+..++++.        +++.
T Consensus       288 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~g~~  341 (390)
T TIGR02718       288 ALLWFAQAAFWL------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ--------AGTD  341 (390)
T ss_pred             HHHHHHHHHccc------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--------hHHH
Confidence            322222110000                  01222333444455556666667777777777665332        7999


Q ss_pred             HHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          187 FSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       187 ~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++..+...++|..+||.+.|++.|+.||+..|...++
T Consensus       342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~  378 (390)
T TIGR02718       342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTV  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            9999999999999999999999999999888876654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.34  E-value=1.4e-11  Score=109.44  Aligned_cols=169  Identities=13%  Similarity=0.049  Sum_probs=131.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      .|.+|...+..+....++-++..++|.|++++++.++.+++...........+..+++|+++||+ |.+|+.....+.++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            46688888889999999999999999999999999999999999999999999999999999998 99999998888887


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++...+.+......                 .+.+...+....+...+..|.-+.....++...+|++          -+
T Consensus       296 ~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~----------~G  348 (417)
T COG2223         296 LAAALLSLFLTGFG-----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE----------TG  348 (417)
T ss_pred             HHHHHHHccccccc-----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh----------hh
Confidence            77776665431000                 0123334444444455555555556677777777762          47


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIP  221 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~  221 (225)
                      ...++....+++|+..-|...+...+.+| +..+|++-
T Consensus       349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~  386 (417)
T COG2223         349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLL  386 (417)
T ss_pred             HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHH
Confidence            77888888899999888999999988887 77777643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.33  E-value=3.2e-11  Score=110.95  Aligned_cols=155  Identities=12%  Similarity=0.008  Sum_probs=123.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |......+..++....+++...++|.|+|+.+|+++.+++.......+...++.++.|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4444555566666667778888999999999999999999999999999999999999999998 999988888877777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+.....                     ..+.........+.|+|.|...+.......+..|+++         ++.
T Consensus       338 ~~~~l~~~~~---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---------~g~  387 (495)
T PRK14995        338 SFYGLAMTDF---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK---------AAA  387 (495)
T ss_pred             HHHHHHHhcC---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh---------cch
Confidence            7665554320                     1122334556778888888887778888888888755         788


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      +.+.++...++|+.+|+.+.+.+.++
T Consensus       388 ~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        388 AGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999987543

>PTZ00207 hypothetical protein; Provisional

Probab=99.33  E-value=6.4e-11  Score=111.02  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=111.8

Q ss_pred             HhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 041538           43 TGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPL  122 (225)
Q Consensus        43 ~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~  122 (225)
                      |++..+. ..+++++|++..+.+++.+... ...+.+++.|+++||+ |||+++.++.+++.++.++++++.. ..    
T Consensus        44 y~fsv~s-~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~-~~----  115 (591)
T PTZ00207         44 YAFNLIS-GAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQ-EV----  115 (591)
T ss_pred             HHHHHHH-HHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhc-cc----
Confidence            4554444 4578899999999998887644 4445677899999998 9999999999999999998888631 00    


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhh-H
Q 041538          123 ACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMV-A  201 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~-g  201 (225)
                                   ...+...+++.+.+.|+|.+...+.....+.++||+ +         |+...++......+|+.+ +
T Consensus       116 -------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~---------RG~a~Gi~~~~~gLGsaI~~  172 (591)
T PTZ00207        116 -------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N---------RGAVVAIMKTFTGLGSAILG  172 (591)
T ss_pred             -------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h---------hHHHHHHHHHHHHHHHHHHH
Confidence                         013567788899999999888877788888999973 3         799999999999999975 6


Q ss_pred             HHhhhheecccCcchhhhhhh
Q 041538          202 VTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       202 ~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ++..+++.+  +|+..|++.+
T Consensus       173 ~l~~~l~~~--~~~~~fl~l~  191 (591)
T PTZ00207        173 SIQLAFFSD--NTSAYFFFLM  191 (591)
T ss_pred             HHHHHHHHH--hHHHHHHHHH
Confidence            655666543  4666665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.32  E-value=2.8e-11  Score=120.89  Aligned_cols=154  Identities=10%  Similarity=0.060  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITE--GTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      .....+...++..+...+....+..++..+++.+...  .+++.+++.+...++++++|+++||+ ||||++.++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence            3344444555555544444555556666666665443  57778888899999999999999998 99999998877665


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +..++..+...                     ..+...+++.+++.|++.+...+...+++.|.+|+++         |+
T Consensus        89 ~~~~~~~~~~~---------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~  138 (1146)
T PRK08633         89 GLTLLIVLAYY---------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN---------LS  138 (1146)
T ss_pred             HHHHHHHHHHH---------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc---------ch
Confidence            55554444320                     1235678889999999999999999999999999855         88


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      ..+++.....++|.++|+.+++++.+.
T Consensus       139 ~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        139 RANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.31  E-value=6.4e-11  Score=105.07  Aligned_cols=157  Identities=11%  Similarity=0.031  Sum_probs=115.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++....+.....++|.|++ +.|+++.+.+...........+..++.|++.||+ |+|+.+..+.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            44454455555555666667778888986 5899999999988888888888899999999997 999998888877777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..++...+                        +...+++..++.+++.+...+....+..+. ++++         +++
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~---------~~~  328 (382)
T PRK11128        283 RWGLMGSTT------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE---------VIR  328 (382)
T ss_pred             HHHHHHhhh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh---------hHH
Confidence            665554432                        345567777888888887777777766664 4323         466


Q ss_pred             HHHHHH-HHHhhhhhhHHHhhhheecccCcchhhh
Q 041538          186 YFSWYY-VSVSASSMVAVTFIVYIQDNLGWKVGFG  219 (225)
Q Consensus       186 ~~~~~~-~~~~ig~~~g~~l~~~l~~~~g~~~~f~  219 (225)
                      ..+.++ ....+|..+||.++|++.|..|+. .|+
T Consensus       329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~  362 (382)
T PRK11128        329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFW  362 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHH
Confidence            666665 456778789999999999988874 444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.31  E-value=9e-11  Score=104.99  Aligned_cols=144  Identities=13%  Similarity=0.050  Sum_probs=103.9

Q ss_pred             HHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 041538           41 ASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHAR  120 (225)
Q Consensus        41 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~  120 (225)
                      ..+.+..++|.|+++ .|+++.+.+.......++..++.++.|+++||+ |||+.+..+.++..+....+....      
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~------  317 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP------  317 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc------
Confidence            344567788999886 599999999888888899999999999999998 999998888776655544333222      


Q ss_pred             CCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhh
Q 041538          121 PLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMV  200 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  200 (225)
                                      ......+.......+....+..+..+.++.|.+|++.         |+++.+..+...++++.+
T Consensus       318 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~~~~~  372 (426)
T PRK12307        318 ----------------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV---------RGLGTGLIYNLAATSGTF  372 (426)
T ss_pred             ----------------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH---------HhhhhhHHHHHHhHHHHH
Confidence                            0111111112222222233334556678889999855         899999999999999999


Q ss_pred             HHHhhhheecccCcchh
Q 041538          201 AVTFIVYIQDNLGWKVG  217 (225)
Q Consensus       201 g~~l~~~l~~~~g~~~~  217 (225)
                      +|.+.+++.++.|+...
T Consensus       373 gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        373 NSMAATWLGITMGLGAA  389 (426)
T ss_pred             HHHHHHHHHHcccHHHH
Confidence            99999999988886543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.31  E-value=2e-11  Score=109.44  Aligned_cols=163  Identities=16%  Similarity=0.107  Sum_probs=120.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++....++....+.+.|.+..++ ++.+.+.......+...++.++.++++||+ |||+++.++.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            445555556666666666655556666665566 555666777777888899999999999998 999999998887777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.+.+.+..                       .+...+++...+.+++.+...+...++++|..|.++.+  .+++.++.
T Consensus       300 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~G~  354 (437)
T TIGR00792       300 GYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWK--TGVRAEGL  354 (437)
T ss_pred             HHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--cCccchHH
Confidence            766655432                       12344556667788888888888899999987743210  11233788


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                      .++++++...+|..+++.+.+++.+..||.
T Consensus       355 ~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       355 VYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            899999999999999999999998877774

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.31  E-value=1e-10  Score=107.77  Aligned_cols=165  Identities=15%  Similarity=0.084  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHH-HHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVL-FFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      +...+..++.....+....+.++|+.+++|+++.+.+.+. ....++..++.+++|+++||+ ||||.+.++.++..+..
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            3333333444455555667788898888999999999987 455678999999999999998 99998776665544444


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      ..+.....                    ...+...+.....+..+..|...+...++..+..+++.         +++.+
T Consensus       304 l~~~~l~~--------------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~---------~~t~~  354 (491)
T PRK11010        304 AGYWLLSI--------------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF---------SATQF  354 (491)
T ss_pred             HHHHHHHh--------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------cHHHH
Confidence            33322110                    01122223334444333334444556777888888765         57778


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++.+...++|..+++.+.|++.|..||+..|.+.++
T Consensus       355 gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~  390 (491)
T PRK11010        355 ALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVA  390 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            888888899999898999999998999988876543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.1e-11  Score=113.46  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=123.8

Q ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccccc
Q 041538           55 REYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCES  134 (225)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++++++|.+.+.+....+..++++++|+++||+ |-|+++..+.++.+++..+..++...                  
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~------------------  126 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI------------------  126 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            36889999999999999999999999999999998 99999999999999999888887621                  


Q ss_pred             ccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc-cC
Q 041538          135 ATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN-LG  213 (225)
Q Consensus       135 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~-~g  213 (225)
                          +...+++.|+++|++.|...|+...+.+++.|+.+         |++..+..+....+|.+++-.+.|++.+. .|
T Consensus       127 ----~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E---------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G  193 (466)
T KOG2532|consen  127 ----GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE---------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG  193 (466)
T ss_pred             ----cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence                22357899999999999999999999999999977         89999998888999999999999999888 89


Q ss_pred             cchhhhhhhcc
Q 041538          214 WKVGFGIPAAI  224 (225)
Q Consensus       214 ~~~~f~~~~~~  224 (225)
                      |++.|++.+++
T Consensus       194 W~sifY~~g~~  204 (466)
T KOG2532|consen  194 WPSIFYVFGIV  204 (466)
T ss_pred             CchHHHHHHHH
Confidence            99999977653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.30  E-value=8.7e-11  Score=108.19  Aligned_cols=167  Identities=14%  Similarity=0.101  Sum_probs=126.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh----ccchHH-HHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY----VGRYAM-IGF   98 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Grr~~-~~~   98 (225)
                      ++|+....+...+......+.....+|.|+++ .|.|.++.+....+.. . .++.++.|.++||+    +||||. +..
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~~-~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVGQ-A-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH-H-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            34556666677777777777778888888875 4999988887632222 2 36789999999994    288886 556


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCcc
Q 041538           99 GCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSK  178 (225)
Q Consensus        99 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~  178 (225)
                      +.++..++...+.+..                     ...+...+...+.+.+++.+...+...++..|.+|+++     
T Consensus        87 ~~i~~~~~~~~~a~~~---------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-----  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE---------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-----  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC---------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-----
Confidence            6666666666555543                     11245567777778888888888889999999999755     


Q ss_pred             chhhHHHHHHHHHHHHhhhhhhHHHhhhheec-ccCcchhhhhhhc
Q 041538          179 SEGALKSYFSWYYVSVSASSMVAVTFIVYIQD-NLGWKVGFGIPAA  223 (225)
Q Consensus       179 ~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~-~~g~~~~f~~~~~  223 (225)
                          |++..++...+.++|..+++.+.+++.+ ..||+..|++.++
T Consensus       141 ----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~  182 (491)
T PRK11010        141 ----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAA  182 (491)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence                8888999999999999999999999888 4699999987654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.30  E-value=9.9e-11  Score=108.23  Aligned_cols=125  Identities=17%  Similarity=0.251  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHH
Q 041538           63 EGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLML  142 (225)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (225)
                      +.+++.+...++..++.++.|.++|++ |||+.+.++.+++.+|.++..++.                        +...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~------------------------~~~~  144 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP------------------------SWYQ  144 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh------------------------hHHH
Confidence            448999999999999999999999998 999999999999999999999876                        5677


Q ss_pred             HHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc--cCcchhhhh
Q 041538          143 LYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN--LGWKVGFGI  220 (225)
Q Consensus       143 ~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~--~g~~~~f~~  220 (225)
                      ++++|++.|+|.|......+.+++|.-|++.         |+...+..+...++|..++ .+.++..++  .+||..+++
T Consensus       145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~---------RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLAPVYISEIAPAHI---------RGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             HHHHHHHhccchhhhhhcchhhHhhcCChhh---------hHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHH
Confidence            9999999999999999999999999999866         8999999999989888888 445544444  489977765


Q ss_pred             hh
Q 041538          221 PA  222 (225)
Q Consensus       221 ~~  222 (225)
                      ..
T Consensus       215 ~~  216 (513)
T KOG0254|consen  215 AL  216 (513)
T ss_pred             HH
Confidence            44

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.29  E-value=8.3e-11  Score=104.41  Aligned_cols=158  Identities=11%  Similarity=-0.095  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH-HHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL-LGM  107 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~-i~~  107 (225)
                      +...+..+....++....+++|.|++ ++|+|..+.+.+.+.+.....+.+++.|.++||+ ||++.......... +..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            34445566666666667888999996 6799999999999999999999999999999998 98543322211111 111


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      ..+...                       .++.+.+++.+.+.+.+.+...|...++..+. + ++         |++.+
T Consensus        85 ~~~~~~-----------------------~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~~---------~~~~~  130 (382)
T TIGR00902        85 AAFSAG-----------------------AHNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-KQ---------FGLDY  130 (382)
T ss_pred             HHHHHh-----------------------hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-HH---------cCCCc
Confidence            111111                       12456677778888888777777777776542 2 12         56667


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +......++|..++|.+.+++.+++||+..|.+.+
T Consensus       131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~  165 (382)
T TIGR00902       131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT  165 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            78888899999999999999999999999887653

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.29  E-value=6.5e-12  Score=93.82  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHH
Q 041538           70 FWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGL  149 (225)
Q Consensus        70 ~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  149 (225)
                      ...+...++.++.|+++||+ ||||.+..+.....++...+....                        +...+.+.+.+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~   60 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIARFL   60 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHHHH
Confidence            34566778899999999998 999999988888777776665433                        34456677888


Q ss_pred             HHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          150 MSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       150 ~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      .+++.+...+....+..|.+|+++         |++..+..+...++|..++|.+.+++.+..+|++.|.+.+
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  124 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPEE---------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA  124 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChhh---------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence            888888888889999999999865         7889999999999999999999999988889988877644

>PRK10504 putative transporter; Provisional

Probab=99.29  E-value=7.2e-11  Score=107.24  Aligned_cols=158  Identities=15%  Similarity=0.024  Sum_probs=119.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |......+..++....+.....+.|.|++..+|.++.+.+.......+...++.++.|+++||+ |||+.+..+.++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3344455556666666655666778888888999999999998888888888889999999998 999999888877766


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..++....                     ...+...+.+..++.+++.+...+..+.+..+..|+++         ++.
T Consensus       340 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~  389 (471)
T PRK10504        340 VSLLFMLVA---------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL---------ASS  389 (471)
T ss_pred             HHHHHHhcc---------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh---------ccc
Confidence            655554422                     01122333445566677777777788888889888755         788


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGW  214 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~  214 (225)
                      .++++++...+|..+|+.+.+.+.+..|+
T Consensus       390 ~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        390 GNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            89999999999999999999988776655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.29  E-value=4.6e-11  Score=119.67  Aligned_cols=136  Identities=12%  Similarity=0.035  Sum_probs=103.3

Q ss_pred             HHhHhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH--HHHHHHHHHHHhhhcCCCCCCcccccc
Q 041538           52 YLCREYNMKIT-EGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI--TCLLGMVLLWLTTIFPHARPLACDYTL  128 (225)
Q Consensus        52 yl~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~  128 (225)
                      .+++..+.+.. ..+++...+.+...++++++|+++||+ ||||++.....  ........+.+..              
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------  105 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------  105 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            34444444333 356677788888999999999999998 99997643222  2211222222211              


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          129 RDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                               .+...+++.++++|++.+...|...+++.|++|+++         |+.+.++.+.+.++|.++||.++|++
T Consensus       106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~---------~~~a~~~~~~~~~ig~~igp~l~g~l  167 (1140)
T PRK06814        106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE---------LLGANALVEAGTFIAILLGTIIGGLA  167 (1140)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc---------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                     246678899999999999999999999999999865         78899999999999999999999999


Q ss_pred             ecccCcchhhhh
Q 041538          209 QDNLGWKVGFGI  220 (225)
Q Consensus       209 ~~~~g~~~~f~~  220 (225)
                      .+..||++.|..
T Consensus       168 ~~~~~~~~~~~~  179 (1140)
T PRK06814        168 TISGNFVILVAL  179 (1140)
T ss_pred             HhccccHHHHHH
Confidence            988899988743

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=6.8e-11  Score=105.18  Aligned_cols=162  Identities=6%  Similarity=0.001  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREY---NMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      ++...+..+.....+.....+.+.|+++.+   +.+..+.+.+.+...+...++.+..|++.||+ |||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence            333344444444455555567788888765   45566677778888888888899999999998 99999988887777


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++........                        ++..+++...+.+++.+........+..+..|++.         ++
T Consensus       296 l~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~a  342 (396)
T TIGR00882       296 VRIIGSSFAT------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL---------SA  342 (396)
T ss_pred             HHHHHHHhcC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce---------EE
Confidence            7665544332                        23445666667777655444444445555555533         44


Q ss_pred             HHHHH-HHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSW-YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~-~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +..+. +++...+|+.++|.+.|++.|..||+..|.+.++
T Consensus       343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~  382 (396)
T TIGR00882       343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGC  382 (396)
T ss_pred             EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHH
Confidence            54444 5678999999999999999998999999987665

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.29  E-value=9e-11  Score=104.82  Aligned_cols=158  Identities=9%  Similarity=0.058  Sum_probs=107.6

Q ss_pred             HHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 041538           42 STGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP  121 (225)
Q Consensus        42 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~  121 (225)
                      ......+.|. ..+++|++..+.+.......+...++.+++|+++||+ |||+.+..+.++..++..++.+......  +
T Consensus       300 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  375 (481)
T TIGR00879       300 INAIMYYSPT-IFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--T  375 (481)
T ss_pred             CeehHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--C
Confidence            3334444444 4457799998888888888999999999999999998 9999998887777777666653221000  0


Q ss_pred             CccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhH
Q 041538          122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVA  201 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g  201 (225)
                      +          .........+........+.+.+ ..+....+..|.+|+++         |++..+..+...++|+.++
T Consensus       376 ~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~lg~~i~  435 (481)
T TIGR00879       376 G----------SSKSSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLSL---------RPKGISIAVAANWLANFIV  435 (481)
T ss_pred             C----------cccchhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChHH---------HHHHHHHHHHHHHHHHHHH
Confidence            0          00000111112222222223322 34566677799999855         8999999999999999999


Q ss_pred             HHhhhheecccCcchhhhhhhc
Q 041538          202 VTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       202 ~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |.+.+++.++.+|++.|++.++
T Consensus       436 ~~~~~~~~~~~~~~~~f~~~~~  457 (481)
T TIGR00879       436 GFLFPTMLESIGVGGVFIFFGG  457 (481)
T ss_pred             HHHHHHHHHhcCccceehhHHH
Confidence            9999999888899887776543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.28  E-value=2e-10  Score=105.61  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=135.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccch--HHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRY--AMIGFGCI  101 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr--~~~~~~~~  101 (225)
                      +.|.+..-++..++.+-+..++......|.++++|++..+...+..+..+...++.++.|++.||+ |.|  +++..+.+
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            346666666677777777888899999999999999999999999999999999999999999998 999  88877766


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..+..+.-.+ ...+...               ...+.+.+++.-.+.|+..|..++..-++.+++.|+++        
T Consensus       358 ~~~~i~~~g~~-G~~~~~~---------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~--------  413 (477)
T PF11700_consen  358 LWIIIPLYGLF-GFWPSFF---------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR--------  413 (477)
T ss_pred             HHHHHHHHHHH-Hhhhccc---------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch--------
Confidence            55332222221 0000000               01244557777778999999999999999999999966        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhh
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIP  221 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~  221 (225)
                       .+..|+++.+....++.+||.+.+.+.+.+| .|.++...
T Consensus       414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l  453 (477)
T PF11700_consen  414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFL  453 (477)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence             6999999999999999999999999988886 66666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.28  E-value=8.5e-11  Score=104.26  Aligned_cols=150  Identities=13%  Similarity=0.033  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccch----HHHHHHHHHHHHHHHH
Q 041538           34 NEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRY----AMIGFGCITCLLGMVL  109 (225)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr----~~~~~~~~~~~i~~~~  109 (225)
                      ..+....++..+.+++|.|++ ++|.|..+.+++.+...+...+++++.|.++||+ ||+    |.+.+.....   ...
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~   86 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVA   86 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHH
Confidence            345555666677888999996 5799999999999999999999999999999998 984    3322221111   111


Q ss_pred             HHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH
Q 041538          110 LWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW  189 (225)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~  189 (225)
                      +...                       .++.+.+++.+.+.+++.+...+...++..+..++           |+..++.
T Consensus        87 ~~~~-----------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~-----------~~~a~~~  132 (382)
T PRK11128         87 FWFG-----------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ-----------IGLDYGK  132 (382)
T ss_pred             HHHh-----------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh-----------ccCCcch
Confidence            1111                       12456677788888888888888777777765222           3444555


Q ss_pred             HHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          190 YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       190 ~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      .+...++|..+||.+++++.+++||+..|+..+
T Consensus       133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128        133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            566678999999999999999999999987654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.28  E-value=1.2e-10  Score=102.18  Aligned_cols=162  Identities=12%  Similarity=0.090  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+...+........++....+.|.|+++++|+++.+.+.+.....+...++.++.|++.||+ |||+.+..+.++..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            34444444445555667777888999999999999999999999999999999999999998 99999888877777766


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .++......+                   ............+.+++.+...+.......|..|+ +         +++..
T Consensus       287 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~---------~g~~~  337 (385)
T TIGR00710       287 VLLEITAILG-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V---------AGTAS  337 (385)
T ss_pred             HHHHHHHHhc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c---------chHHH
Confidence            6655533111                   01233345555667777777777777777777653 3         67778


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFG  219 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~  219 (225)
                      +.++.....++.+.+.+.+.+.+..+|...+.
T Consensus       338 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence            87776665444444444556655545554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=6.1e-11  Score=107.18  Aligned_cols=164  Identities=13%  Similarity=0.142  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH-
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL-  105 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i-  105 (225)
                      .++...+..++.....+++..++|.|+++..|+++.++++......+...++.+++|+++||+ |++|....+.....+ 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            344444555566666778889999999998999999999999999999999999999999997 755432333222211 


Q ss_pred             --HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          106 --GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       106 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                        +...+....                      ..+........+..+.+.............|.+|+++         |
T Consensus       331 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~  379 (438)
T TIGR00712       331 TIAVIVYWMNP----------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------A  379 (438)
T ss_pred             HHHHHHHHhcC----------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh---------e
Confidence              111111111                      0112222333334444322222222345678888755         7


Q ss_pred             HHHHHHHHHHHhhhh-hhHHHhhhheecccCcchhhhhhh
Q 041538          184 KSYFSWYYVSVSASS-MVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~-~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +++.++++...++++ .++|.+.|++.|+.||...|.+..
T Consensus       380 g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~  419 (438)
T TIGR00712       380 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  419 (438)
T ss_pred             eeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence            888999888888875 689999999999999988886543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.27  E-value=7.1e-11  Score=103.33  Aligned_cols=143  Identities=15%  Similarity=0.091  Sum_probs=104.3

Q ss_pred             HHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh----ccchHHH-HHHHHHHHHHHHHHHHhhhcCCCCCC
Q 041538           48 NMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY----VGRYAMI-GFGCITCLLGMVLLWLTTIFPHARPL  122 (225)
Q Consensus        48 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Grr~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~  122 (225)
                      .+|.+ .+++|+|.++.+..... .....+ .++.|.++||+    +||||.+ ..+.+...+....+.+..        
T Consensus        10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--------   78 (356)
T TIGR00901        10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--------   78 (356)
T ss_pred             HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC--------
Confidence            34444 45789999999988655 333333 88999999996    3899975 455555555554444432        


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHH
Q 041538          123 ACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAV  202 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~  202 (225)
                                   ...+...+....++.+.+.+...+...+++.|.+|+++         |+.+.++...+.++|.++++
T Consensus        79 -------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------r~~~~~~~~~~~~~G~~~~~  136 (356)
T TIGR00901        79 -------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE---------LGYGSTIYIVGYRAGMLLSG  136 (356)
T ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---------hchHHHHHHHHHHHHHHHHH
Confidence                         01233444555556667777778889999999998755         78888999999999999999


Q ss_pred             HhhhheecccC--------cchhhhhhhc
Q 041538          203 TFIVYIQDNLG--------WKVGFGIPAA  223 (225)
Q Consensus       203 ~l~~~l~~~~g--------~~~~f~~~~~  223 (225)
                      .+++++.++.|        |+..|++.++
T Consensus       137 ~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901       137 SLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHhhhcccccccccccHHHHHHHHH
Confidence            99998888888        9999987654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.27  E-value=1.5e-10  Score=103.39  Aligned_cols=157  Identities=14%  Similarity=0.092  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh----ccchH-HHHHHHHHHHHHHH
Q 041538           34 NEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY----VGRYA-MIGFGCITCLLGMV  108 (225)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Grr~-~~~~~~~~~~i~~~  108 (225)
                      ..+.....+.....-+|.|++++ |+|.++.+.+..+...  .+..++.|+++||+    +|||| .+.++.+...++..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            45555666666778889999965 9999999988666654  58899999999996    27776 67777777776666


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      .+.+..                     ...+...++....+.+...+...+...+++.|.+|+++         |++..+
T Consensus        84 ~l~~~~---------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~---------r~~~~~  133 (402)
T PRK11902         84 AMAFCP---------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE---------RGAGAA  133 (402)
T ss_pred             HHHhcC---------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---------hhHHHH
Confidence            665542                     01234445555555667777788899999999998865         788888


Q ss_pred             HHHHHHhhhhhhHHHhhhheecc-cCcchhhhhhhc
Q 041538          189 WYYVSVSASSMVAVTFIVYIQDN-LGWKVGFGIPAA  223 (225)
Q Consensus       189 ~~~~~~~ig~~~g~~l~~~l~~~-~g~~~~f~~~~~  223 (225)
                      ....+.++|..+++.+.+++.+. .||+..|++.++
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~  169 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAG  169 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHH
Confidence            88888899999999999988775 499999987554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.26  E-value=1.2e-10  Score=103.39  Aligned_cols=161  Identities=11%  Similarity=0.039  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMV  108 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~  108 (225)
                      +......++.....+.+..++++|+++.+|+++.+.+.......+...++.++.|++.||+ |+|+.+..+..+..++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence            3333333344444455667778899888999999999999999999999999999999997 999998888777776665


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      ++....                       .+.....+...+.+.+.....+.......+..++++        .++..  
T Consensus       281 ~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~--  327 (382)
T PRK10091        281 MLFFFG-----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE--------LLGAA--  327 (382)
T ss_pred             HHHHHH-----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch--------HHHHH--
Confidence            544322                       011223333334444443333333333344333222        13333  


Q ss_pred             HHHHHHhhhhhhHHHhhhheecc-cCcchhhhhhhc
Q 041538          189 WYYVSVSASSMVAVTFIVYIQDN-LGWKVGFGIPAA  223 (225)
Q Consensus       189 ~~~~~~~ig~~~g~~l~~~l~~~-~g~~~~f~~~~~  223 (225)
                      ..+...++|..+||.++|++.|. .+|++.+...++
T Consensus       328 ~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~  363 (382)
T PRK10091        328 GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAAL  363 (382)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHH
Confidence            23566789999999999998885 588888876543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.26  E-value=4.1e-11  Score=107.39  Aligned_cols=163  Identities=11%  Similarity=0.132  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHH-HHHHHHHHHHHHHHH
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAM-IGFGCITCLLGMVLL  110 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~-~~~~~~~~~i~~~~l  110 (225)
                      .+........+.++++.|+++++|+++.+.+.+..+..+...+..++.|+++||.   +||||. +..+.....++..++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            3455566667778899999999999999999999999999999999999999983   388664 556666777676666


Q ss_pred             HHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHH
Q 041538          111 WLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWY  190 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~  190 (225)
                      ......+                  .......+++...+.+++.+....+..++..|..+++++        |++..++.
T Consensus        88 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~--------R~~~~~~~  141 (437)
T TIGR00792        88 FTTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE--------RESLSTFR  141 (437)
T ss_pred             HhCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH--------HHHHHHHH
Confidence            5543111                  112234455556667777777777778888888754332        88888888


Q ss_pred             HHHHhhhhhhHHHhhhhee-------cccCcchhhhhhhc
Q 041538          191 YVSVSASSMVAVTFIVYIQ-------DNLGWKVGFGIPAA  223 (225)
Q Consensus       191 ~~~~~ig~~~g~~l~~~l~-------~~~g~~~~f~~~~~  223 (225)
                      +...++|+.+++.+.+.+.       +..||++.+.+.++
T Consensus       142 ~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~  181 (437)
T TIGR00792       142 RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL  181 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence            8888888777666554432       24589887765543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.26  E-value=9.5e-11  Score=105.63  Aligned_cols=165  Identities=16%  Similarity=0.167  Sum_probs=133.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |......+..++.........+..+.|.+..+|.+ ...+.......+...++.++.++++||+ |+||++..+.++..+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            55566677777777777777778888888888877 4556667778888889999999999998 999999999999988


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+.+..                      .++...+++...+.+++.+......+++++|..+.++.  +.+++..+.
T Consensus       303 ~~~~~~~~~----------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~--~tg~r~~g~  358 (428)
T PF13347_consen  303 GFLLLFFLG----------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEW--KTGRRREGM  358 (428)
T ss_pred             HHHHHHHHH----------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHH--hcCCCchHH
Confidence            888777754                      13567788888999999999999999999999986542  133344688


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcch
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKV  216 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~  216 (225)
                      .++.+.+...++.++++.+.+.+.+..|+..
T Consensus       359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~  389 (428)
T PF13347_consen  359 YFSVNSFFIKIGQGLAGAIVGLLLALVGYDA  389 (428)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence            8889999999999999999998877666653

>PRK09848 glucuronide transporter; Provisional

Probab=99.26  E-value=4.4e-11  Score=108.36  Aligned_cols=165  Identities=15%  Similarity=0.118  Sum_probs=124.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+....+..++....++......+.|+++.+|.++...........+...++.++.++++||+ |+|+++.++.+++.+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4455555566666666666777778888888898776666555544566778899999999998 999999999888888


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.+.+.+..                      ..+...+++...+.++|.+...+...++.+|..|.++.  +.+++.++.
T Consensus       307 ~~~~~~~~~----------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~--~~g~r~~G~  362 (448)
T PRK09848        307 GYLLFFWVS----------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY--LTGVRIEGL  362 (448)
T ss_pred             HHHHHHHcC----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--hhCccchhH
Confidence            776665432                      12344566667788899888888999999998886542  123344688


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                      .++.+++...+|..+|+.+.+.+.+..||.
T Consensus       363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~~  392 (448)
T PRK09848        363 TYSLFSFTRKCGQAIGGSIPAFILGLSGYI  392 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            889999999999999999999887776764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.8e-10  Score=102.69  Aligned_cols=164  Identities=13%  Similarity=0.034  Sum_probs=127.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      +++.++...+..++...+.|...+|+-+++++..|+|.+..+++...+.++..++..++|+++||  +.|+.+....++.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~  286 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL  286 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence            34667788888888899999999999999999999999999999999999999999999999999  7888888877766


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccC--CCCCCCccchh
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLE--KGDGIKSKSEG  181 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p--~~~~~~~~~~~  181 (225)
                      ++....+.+..                       ++.........+.++.....   .+....+..+  +++        
T Consensus       287 a~~~l~l~~~~-----------------------~~~~~~~~~~~~wg~a~~~~---~~~~~~~~a~~~p~~--------  332 (394)
T COG2814         287 ALALLALTFTG-----------------------ASPALALALLFLWGFAFSPA---LQGLQTRLARLAPDA--------  332 (394)
T ss_pred             HHHHHHHHHhc-----------------------chHHHHHHHHHHHHHHhhhh---hhHHHHHhcccCCCc--------
Confidence            66666555543                       23344444445555554433   3444444444  222        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhcc
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAI  224 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~~  224 (225)
                       ++...+++....|+|-.+|..++|.+.|+.|+....+..+++
T Consensus       333 -~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l  374 (394)
T COG2814         333 -ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAAL  374 (394)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence             688888889999999999999999999999998888776653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.25  E-value=1.8e-10  Score=100.61  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhC
Q 041538           75 SNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGG  154 (225)
Q Consensus        75 ~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  154 (225)
                      ..+++++.|+++||+ ||||++..+.++..++..+..+..+.+..                .......+++.+.+.|++.
T Consensus        48 ~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~r~l~G~~~  110 (394)
T TIGR00883        48 RPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI----------------GIWAPILLLLARLIQGFSL  110 (394)
T ss_pred             hhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh----------------HHHHHHHHHHHHHHHHhhc
Confidence            346789999999998 99999999999888888877765521110                0011235778889999999


Q ss_pred             cccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee--------cccCcchhhhhhhc
Q 041538          155 GGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ--------DNLGWKVGFGIPAA  223 (225)
Q Consensus       155 g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~--------~~~g~~~~f~~~~~  223 (225)
                      +...+..+.++.|.+|+++         |+...+..+....+|..+++.+...+.        +..+|++.|.+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  178 (394)
T TIGR00883       111 GGEWGGAALYLAEYAPPGK---------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV  178 (394)
T ss_pred             cccccccHHHhhhcCCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHH
Confidence            9988999999999998865         788888888888899888888776543        34689988876543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.1e-10  Score=103.94  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=130.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHH
Q 041538           20 NPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFG   99 (225)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~   99 (225)
                      .++.++|.+++........... ..+...+..++.+++|+|+.|.+++..+-.+...+..++-|.+.||+ |.|++..++
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~V-W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s   85 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMV-WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILS   85 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHH
Confidence            3456678777655543333333 33445555677799999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccc
Q 041538          100 CITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS  179 (225)
Q Consensus       100 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~  179 (225)
                      .++.++-++.+.++...|                     +...+++...+.|++-+ ..++..+.+++.|||++      
T Consensus        86 ~~l~~IP~~~~~~a~~~~---------------------~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~------  137 (417)
T COG2223          86 MLLLLIPCLGLAFAVTYP---------------------STWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK------  137 (417)
T ss_pred             HHHHHHHHHHHHHHccCC---------------------chHHHHHHHHHHhcccc-eehcccccccccCChhh------
Confidence            999888888888876322                     12346666666676644 56778888999999976      


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHhhhheecccC---cchhhhhh
Q 041538          180 EGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG---WKVGFGIP  221 (225)
Q Consensus       180 ~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g---~~~~f~~~  221 (225)
                         .+.+.+++. .+|+|..+...+++++....|   |+..-.+.
T Consensus       138 ---qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~  178 (417)
T COG2223         138 ---QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIY  178 (417)
T ss_pred             ---hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence               688888888 999999999999999988888   76655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.23  E-value=3.6e-10  Score=100.74  Aligned_cols=160  Identities=11%  Similarity=-0.047  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      .++...+...+.....+.+..+.|.|+++++|+++.+.+........+..++.++.|+++||+ |+||.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344444444444555556677788999989999999988887777778888999999999998 9999998888777777


Q ss_pred             HHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHH
Q 041538          107 MVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSY  186 (225)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~  186 (225)
                      ..++.......                   ..+...+++...+.+++.+...+..+...... ++++         +++.
T Consensus       295 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~---------~g~~  345 (406)
T PRK15402        295 LLLAALATVIS-------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS---------KGTV  345 (406)
T ss_pred             HHHHHHHHHcc-------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc---------ccHH
Confidence            76665533110                   12334456677778888776666555544332 3333         7899


Q ss_pred             HHHHHHHHhhhhhhHHHhhhheecccCcch
Q 041538          187 FSWYYVSVSASSMVAVTFIVYIQDNLGWKV  216 (225)
Q Consensus       187 ~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~  216 (225)
                      ++.++....++..+|+.+.+++.+..++..
T Consensus       346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            999999999999999999999988766543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.22  E-value=8.4e-11  Score=101.42  Aligned_cols=141  Identities=16%  Similarity=0.174  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHH
Q 041538           31 IIANEAFERMASTGFMPNMILYLCREYNMK-ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVL  109 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~  109 (225)
                      .....+.....++....++|.|+++++|++ ..+.+.......+...++.++.|+++||+ |+|+..........++...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            444555555566778899999999999999 88999999999999999999999999997 9988888777766666655


Q ss_pred             HHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH
Q 041538          110 LWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW  189 (225)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~  189 (225)
                      +.+...                     ..+....+....+.+++.+...+....++.|.+|+++         |++..+.
T Consensus       290 ~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~  339 (352)
T PF07690_consen  290 LLLLPF---------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY---------RGTAFGL  339 (352)
T ss_dssp             HCCSHH---------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH---------HHHHHHH
T ss_pred             HHHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHH
Confidence            554331                     1134456667777888888889999999999998855         8999999


Q ss_pred             HHHHHhhhhhhHH
Q 041538          190 YYVSVSASSMVAV  202 (225)
Q Consensus       190 ~~~~~~ig~~~g~  202 (225)
                      .+...++|+.+||
T Consensus       340 ~~~~~~~~~~igP  352 (352)
T PF07690_consen  340 FNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.21  E-value=2.1e-10  Score=105.28  Aligned_cols=164  Identities=11%  Similarity=0.111  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHh----hccchHHHHHH-HHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADS----YVGRYAMIGFG-CIT  102 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr----~~Grr~~~~~~-~~~  102 (225)
                      ++.+....+...+.+-.-.+++++|++ ++|.++.+.+.+.....+...+.+++.|+++||    + ||||.++.+ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            444444555666666666777777764 799999999999999999999999999999995    6 999998875 445


Q ss_pred             HHHHHHHHHHhhhcCCCCCCcccccccccccccc-chhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESAT-GSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      .+++..++.+..+......+        ...... ........++..+.-+.....++...++++|..|+++|       
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~--------~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-------  148 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGD--------NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-------  148 (477)
T ss_pred             HHHHHHHHHhCchhhhhccc--------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-------
Confidence            55665666554321110000        000000 00112344444455566677778889999999998763       


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                      .++.++++.+...++|+.+|+.++++.
T Consensus       149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       149 RTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            146788888999999999999988764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.21  E-value=7.9e-10  Score=98.82  Aligned_cols=162  Identities=11%  Similarity=-0.008  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..+......++...+.++++.+++|+++.+.+.+.....++..++.++.|++.||. +| +.+....++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~-~~l~~~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VK-LALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hHHHHHHHHHHH
Confidence            4455444444555555556666765555567899999999999989999999999999999995 54 443433333333


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      ..+++....                       .+...+.....+.|++.+...+..+.++.+..|+ +         +++
T Consensus       294 ~~~~l~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~---------~~~  340 (394)
T PRK10213        294 SALVLTLWG-----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q---------AEK  340 (394)
T ss_pred             HHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c---------HHH
Confidence            322222221                       1234556677778888888888888888888774 2         334


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ..+.++...++|..+||.+.|++.|..|++..+...+
T Consensus       341 ~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~  377 (394)
T PRK10213        341 AGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSG  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHH
Confidence            4455566778999999999999999889888777654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.20  E-value=5.7e-10  Score=101.38  Aligned_cols=166  Identities=14%  Similarity=-0.032  Sum_probs=109.3

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHH--------
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMI--------   96 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~--------   96 (225)
                      ++.++...+..++....++....++|.|+++++|++..+++....+..++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            34566667777888888888899999999999999999999999999999999999999999997 644321        


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCC
Q 041538           97 GFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIK  176 (225)
Q Consensus        97 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~  176 (225)
                      ..+......+...+....                     ...+.....+.+.+.+.+.+...+.......|..|+     
T Consensus       339 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----  392 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPY---------------------LSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-----  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHH---------------------cCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-----
Confidence            111111111111111111                     001222233334444444444444443344444443     


Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhhHHHhhhheeccc---Ccchhhhhhh
Q 041538          177 SKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNL---GWKVGFGIPA  222 (225)
Q Consensus       177 ~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~---g~~~~f~~~~  222 (225)
                           .++...++.+...++++.++|.+.+++.+..   +|+.+|.+.+
T Consensus       393 -----~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~  436 (465)
T TIGR00894       393 -----FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA  436 (465)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHH
Confidence                 2799999999999999999999999987653   3777776654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=4.5e-11  Score=105.75  Aligned_cols=136  Identities=17%  Similarity=0.110  Sum_probs=122.8

Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccc
Q 041538           56 EYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESA  135 (225)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..+-.+++.+++.....+...+..++.|.+.||+ |+|-.+.++........+++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            3556778889999999999999999999999997 999999999988888888888866                     


Q ss_pred             cchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          136 TGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       136 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                         +..++.++|.++|+|.+....+..++++|.||++++        |+++.+..-....+|-.+||.++|.+.+..|++
T Consensus       158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e--------r~~vmGialgfislG~lvgPpfGGilYe~~Gk~  226 (464)
T KOG3764|consen  158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE--------RGSVMGIALGFISLGVLVGPPFGGILYEFAGKS  226 (464)
T ss_pred             ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh--------hhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence               456799999999999999999999999999998775        899999998899999999999999999999999


Q ss_pred             hhhhhhhcc
Q 041538          216 VGFGIPAAI  224 (225)
Q Consensus       216 ~~f~~~~~~  224 (225)
                      ..|.+.+++
T Consensus       227 aPFlVL~~v  235 (464)
T KOG3764|consen  227 APFLVLAIV  235 (464)
T ss_pred             CcHHHHHHH
Confidence            999887654

>PRK10133 L-fucose transporter; Provisional

Probab=99.18  E-value=3.7e-10  Score=102.56  Aligned_cols=160  Identities=14%  Similarity=0.053  Sum_probs=116.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHH-hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYL-CREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      |..+...+..++.....++...+.+.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ ||||++..+.++.+
T Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~  336 (438)
T PRK10133        258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Confidence            3333444444555556666677888885 667899999999999999999999999999999997 99999888876666


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++..+..+..                        +. .......+.+++.+...|...+...+.+|++.          +
T Consensus       337 ~~~~~~~~~~------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~----------~  381 (438)
T PRK10133        337 ALCLISAFAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT----------K  381 (438)
T ss_pred             HHHHHHHHcC------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh----------c
Confidence            5554433322                        11 12445677889999999999999999888643          2


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPA  222 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~  222 (225)
                      .+.++.. ...+|+.++|.+.|++.|..| -+..|++..
T Consensus       382 ~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~  419 (438)
T PRK10133        382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_pred             cchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence            2233332 344678899999999988887 677776543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.18  E-value=4.9e-10  Score=104.95  Aligned_cols=141  Identities=12%  Similarity=0.118  Sum_probs=110.1

Q ss_pred             HHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 041538           47 PNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDY  126 (225)
Q Consensus        47 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  126 (225)
                      .....+..+++|-+ ....|+.+.+.+...+..++.|.++|.+ |||..++.+.++.++|.++.+-+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34456777888865 5566778889999999999999999998 999999999999999999888655            


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhh
Q 041538          127 TLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                                  +...++.+..+.|+|.|... .....++|..|.+.         |..+........-+....+|.++.
T Consensus       130 ------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~---------R~~~~~~~~~~~i~~~~~~~~ia~  187 (599)
T PF06609_consen  130 ------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW---------RGLGLAIASIPFIITTWISPLIAQ  187 (599)
T ss_pred             ------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch---------hhhHhHHHHHHHHhhhcccHHHHH
Confidence                        45668999999999977654 45667899998744         555555555555555556777777


Q ss_pred             heecccCcchhhhhhhc
Q 041538          207 YIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       207 ~l~~~~g~~~~f~~~~~  223 (225)
                      .+..+.+|||.|++..+
T Consensus       188 ~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  188 LFAAHSGWRWIFYIFII  204 (599)
T ss_pred             HhccCCCcchHHHHHHH
Confidence            77667799999987654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.17  E-value=3.2e-10  Score=104.35  Aligned_cols=146  Identities=14%  Similarity=0.050  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHH------------HHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTN------------VLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      .+.....+|+...+.|.+++ +.|++..++..            ...+..+...++.+++++++||+ |||+.+..+.++
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~  374 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHH
Confidence            34455677888888888886 56876543221            12223334555778899999998 999998888777


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++..++......                   .... ............+..+..+....+.+|.+|++.         
T Consensus       375 ~~~~~~~l~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~---------  425 (502)
T TIGR00887       375 LTVLFFVLGFAYNH-------------------LSTH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY---------  425 (502)
T ss_pred             HHHHHHHHHHHHHh-------------------cchh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH---------
Confidence            76666555543200                   0001 111111111122222234556677899999955         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      |+++.++.+....+++.++|.+.+++.+.
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            89999999999999999999999988774

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.16  E-value=1.2e-09  Score=99.95  Aligned_cols=174  Identities=12%  Similarity=0.054  Sum_probs=117.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+|...+..++....|.++..++|.|+++.+  +.........+..+...+..+++|+++||+ |+||++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            45677777788888888888889999998765  333344445556778888999999999998 999999998886666


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCC-CCC---------
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKG-DGI---------  175 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~-~~~---------  175 (225)
                      +...+....  |.                ....+...+....+...++.|..+.+...++.+.||+. .+.         
T Consensus       329 ~~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~  390 (462)
T PRK15034        329 FSALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDE  390 (462)
T ss_pred             HHHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchh
Confidence            654433322  11                01123455555555555666666777888888888741 100         


Q ss_pred             --CccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhh
Q 041538          176 --KSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGI  220 (225)
Q Consensus       176 --~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~  220 (225)
                        ....++.-+.+.++....+.+|+.+-|.+.+...+.+| +..+|+.
T Consensus       391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~  438 (462)
T PRK15034        391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKV  438 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHH
Confidence              00112245777888888899999999988887766654 6555543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.16  E-value=1.6e-09  Score=94.80  Aligned_cols=144  Identities=12%  Similarity=0.035  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHH-HHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWS-AASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      ++...+..++....++...+++|.|+++ +|+++.+.+.+..... +...++.+++|+++||+ ||||.+..+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5555556666677788888999999987 8999999988777655 56788999999999998 9999988888777666


Q ss_pred             HHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHH
Q 041538          107 MVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSY  186 (225)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~  186 (225)
                      ...+.+..+...-             .+....+...+....++.+++.+...+...+++.|.+|++.         |++.
T Consensus       289 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---------~g~~  346 (356)
T TIGR00901       289 NAGFVWLASNGHH-------------DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF---------GATQ  346 (356)
T ss_pred             HHHHHHHHhcCcc-------------cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc---------cHHH
Confidence            5544433100000             00000233456666777888889899999999999999976         7999


Q ss_pred             HHHHHHHHh
Q 041538          187 FSWYYVSVS  195 (225)
Q Consensus       187 ~~~~~~~~~  195 (225)
                      +++++...+
T Consensus       347 ~g~~~~~~~  355 (356)
T TIGR00901       347 MALLSSLSA  355 (356)
T ss_pred             HHHHHHHHh
Confidence            998776654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.13  E-value=8.1e-10  Score=101.26  Aligned_cols=161  Identities=9%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchH-----HHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYA-----MIGFGCITC  103 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-----~~~~~~~~~  103 (225)
                      +...+..+......+....++|.|+.+++|+++.+++.+.....+...++.+++|+++||+ |||+     .........
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHH
Confidence            3333333344444456677899999999999999999999999999999999999999998 8762     222211111


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      ..+...+.+..                      ..+.....+...+.+++.+...+...++..+..| +.         +
T Consensus       334 l~~i~~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---------~  381 (476)
T PLN00028        334 LGGVFCIWLGR----------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS---------L  381 (476)
T ss_pred             HHHHHHHHhcc----------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh---------c
Confidence            11111122111                      0122223333444444443333344444555433 22         6


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +...++.+...++|+.++|.+.+ ..+..+|+.+|.+.++
T Consensus       382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~  420 (476)
T PLN00028        382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGV  420 (476)
T ss_pred             hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHH
Confidence            88888877777777777766654 2233468888877654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=1.4e-09  Score=97.03  Aligned_cols=143  Identities=14%  Similarity=0.108  Sum_probs=92.5

Q ss_pred             HHHHHHHhHhcCCchhHHHHHHHHHH-HHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 041538           47 PNMILYLCREYNMKITEGTNVLFFWS-AASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD  125 (225)
Q Consensus        47 ~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  125 (225)
                      .+.+.++.+++|+++.+.+.+..... ....++.+++|++.||+ ||||.+..+.+...+....+......         
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~---------  299 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT---------  299 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            34456778889999999998876544 45788899999999998 99998877766555544333221100         


Q ss_pred             cccccccccccchhHHHHHHHH----HHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhH
Q 041538          126 YTLRDSCESATGSQLMLLYLAF----GLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVA  201 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g  201 (225)
                                 .++...++...    +..+++.+...+....++.+.+|.++         +    +.++...+++..++
T Consensus       300 -----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~l~~~~~  355 (402)
T PRK11902        300 -----------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ---------Y----ALLSALASVGRVYV  355 (402)
T ss_pred             -----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---------H----HHHHHHHHHHHHHH
Confidence                       01223333333    23445555556666666666666432         3    33444456677666


Q ss_pred             HHhhhheecccCcchhhhhhhc
Q 041538          202 VTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       202 ~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +.++|++.|..||+..|.+.++
T Consensus       356 ~~~~G~l~~~~G~~~~f~~~~~  377 (402)
T PRK11902        356 GPTSGYLVEAYGWPGFYLMTVV  377 (402)
T ss_pred             HHHHHHHHHHhChHHHHHHHHH
Confidence            6789999999999988877654

>PRK10054 putative transporter; Provisional

Probab=99.12  E-value=6.1e-10  Score=99.57  Aligned_cols=164  Identities=15%  Similarity=0.054  Sum_probs=115.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHh--cCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCRE--YNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      |.++...+..++....+.....+.+.|+...  .+.+....+.............++..|++.||+ ++|+.+..+.++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            3444444455555555555555667776543  455566667777777777777788889999997 9999988887777


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++...+....                       ++...+.++..+.++|.+...|.....+.+..|++.         |
T Consensus       285 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~---------~  332 (395)
T PRK10054        285 VIGLVGFIFSG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM---------K  332 (395)
T ss_pred             HHHHHHHHHcc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc---------c
Confidence            77765554422                       134445566778888887777788888888888755         5


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ++.++.++ ...+|..+||.++|++.|+.|.+..|.+.++
T Consensus       333 ~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~  371 (395)
T PRK10054        333 ASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILAL  371 (395)
T ss_pred             eehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHH
Confidence            66666543 5668999999999999999998887776543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.11  E-value=4.9e-10  Score=103.46  Aligned_cols=132  Identities=11%  Similarity=0.028  Sum_probs=114.8

Q ss_pred             hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccc
Q 041538           54 CREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCE  133 (225)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+..+.+........+++.++..+++++.|.++||+ |||+++.++.++.+++.+..+++.                   
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~-------------------  169 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP-------------------  169 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence            356677888889999999999999999999999996 999999999999999888777766                   


Q ss_pred             cccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccC
Q 041538          134 SATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG  213 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g  213 (225)
                           +...+++.|.+.|++.++...+...+++|.++++.         |+.+..+ ......++.+++.+.+++.+  +
T Consensus       170 -----~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~---------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~  232 (521)
T KOG0255|consen  170 -----NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ---------RGLALTL-GGFFFVGGLMLPAGAAYITR--D  232 (521)
T ss_pred             -----cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch---------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence                 56779999999999999999999999999999966         7887777 66777777888888888876  7


Q ss_pred             cchhhhhhh
Q 041538          214 WKVGFGIPA  222 (225)
Q Consensus       214 ~~~~f~~~~  222 (225)
                      ||+.+++..
T Consensus       233 Wr~~~~~~~  241 (521)
T KOG0255|consen  233 WRWLFWIIS  241 (521)
T ss_pred             HHHHHHHHH
Confidence            998887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.09  E-value=4.6e-09  Score=95.34  Aligned_cols=148  Identities=7%  Similarity=-0.007  Sum_probs=102.2

Q ss_pred             hhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 041538           44 GFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLA  123 (225)
Q Consensus        44 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~  123 (225)
                      ....+.|.+. ++.|++..+..+......+...++.+++|+++||+ |||+.+..+.++.+++.+.+......+      
T Consensus       289 ~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~------  360 (479)
T PRK10077        289 VVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ------  360 (479)
T ss_pred             HHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC------
Confidence            3344445544 46898888777777778888899999999999998 999999999888888777665443100      


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHhCcc-cchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHH
Q 041538          124 CDYTLRDSCESATGSQLMLLYLAFGLMSLGGGG-IRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAV  202 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~  202 (225)
                                   ... ......+.+.+++.+. ..+..+.++.|.+|++.         |+++.++.+...+++..+++
T Consensus       361 -------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---------r~~~~g~~~~~~~~g~~~~~  417 (479)
T PRK10077        361 -------------APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI---------RGKALAIAVAAQWIANYFVS  417 (479)
T ss_pred             -------------ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH---------HHHHHHHHHHHHHHHHHHHH
Confidence                         111 1222233333333332 33667889999999855         89999998888888888876


Q ss_pred             Hhhh------heecccCcchhhhhhh
Q 041538          203 TFIV------YIQDNLGWKVGFGIPA  222 (225)
Q Consensus       203 ~l~~------~l~~~~g~~~~f~~~~  222 (225)
                      .+.+      ++.++.+|+..|.+.+
T Consensus       418 ~~~p~~~~~~~~~~~~~~~~~~~~~~  443 (479)
T PRK10077        418 WTFPMMDKNSWLVAHFHNGFSYWIYG  443 (479)
T ss_pred             HHhHHHHhccchhhhccCccHHHHHH
Confidence            5555      4446678887776544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.09  E-value=2.2e-09  Score=107.41  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=116.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKIT-EGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      |.++..++..++.....+....++|.|+++.+|++.. +.+++.....++..++.++.|+++||+ ++++.+.++.++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3344444444444555566778889999999999999 999999999999999999999999997 99998888777666


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++.+++.+..                        +...+++..++.+++.+...+...+++.+..|++.         |+
T Consensus       311 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------rg  357 (1146)
T PRK08633        311 LSLFLLPTAP------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE---------LG  357 (1146)
T ss_pred             HHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc---------hh
Confidence            6665555432                        34456666777888888888888899989888866         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                      ++++.+++..++|..+++.+.+.+.
T Consensus       358 ~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        358 KVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888888877776654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.08  E-value=4.7e-09  Score=93.17  Aligned_cols=146  Identities=12%  Similarity=0.095  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHh
Q 041538           34 NEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLT  113 (225)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~  113 (225)
                      .-|+.....+.....+.+.+++.++++..|++.+......++.+.++..|++.||+ |+|+.+.++..++++|+.+++=+
T Consensus        20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pA   98 (422)
T COG0738          20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPA   98 (422)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhh
Confidence            33333334456677888999999999999999999999999999999999999998 99999999999999999877643


Q ss_pred             hhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 041538          114 TIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVS  193 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~  193 (225)
                      .                     ......++++++.+.+.|.+......+++++.+.|+++         -+.-.+..+..
T Consensus        99 a---------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~---------a~~rlnl~q~f  148 (422)
T COG0738          99 A---------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES---------AAFRLNLAQAF  148 (422)
T ss_pred             h---------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh---------HHHHHHHHHHh
Confidence            3                     12356789999999999999999999999999999854         23335566778


Q ss_pred             HhhhhhhHHHhhhheec
Q 041538          194 VSASSMVAVTFIVYIQD  210 (225)
Q Consensus       194 ~~ig~~~g~~l~~~l~~  210 (225)
                      ..+|+++||.+++++..
T Consensus       149 n~lGa~~gp~~g~~lil  165 (422)
T COG0738         149 NGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            89999999999997755

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.08  E-value=2.4e-10  Score=101.45  Aligned_cols=111  Identities=42%  Similarity=0.798  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCC
Q 041538           93 YAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKG  172 (225)
Q Consensus        93 r~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~  172 (225)
                      +|++.++.+++++|++++.++...+..               +.+.+...+++++.+.++|.|+..|+..++++|||+++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~   65 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED   65 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence            478999999999999998887632220               12334577999999999999999999999999999987


Q ss_pred             CCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhcc
Q 041538          173 DGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAI  224 (225)
Q Consensus       173 ~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~~  224 (225)
                      ++      +.|.++|.++|++.|+|+.+++.+.++++++.||.++|++.++.
T Consensus        66 ~~------~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~  111 (372)
T PF00854_consen   66 DD------SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIG  111 (372)
T ss_dssp             TT------THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHH
T ss_pred             ch------hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHH
Confidence            43      45999999999999999999999999999999999999988764

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.08  E-value=3.4e-09  Score=98.47  Aligned_cols=166  Identities=15%  Similarity=0.089  Sum_probs=123.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      ..|.+|.   ..++.+++......-++-++. ++.-|+...+.+.....+-..+..+++|.++||+ .|||+++.+-++.
T Consensus        11 ~Fr~lw~---a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~   85 (524)
T PF05977_consen   11 NFRRLWI---AQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLR   85 (524)
T ss_pred             hHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHH
Confidence            3455555   444444443322222333333 4566788888888888888889999999999998 9999999998877


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .+....+.+.....                   ..+++.+++..++.+++.+...|+.++++.|+.|+++         .
T Consensus        86 ~~~~~~L~~l~~~~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~---------L  137 (524)
T PF05977_consen   86 ALVALLLAVLAFFG-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED---------L  137 (524)
T ss_pred             HHHHHHHHHHHHhC-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh---------H
Confidence            66555555433111                   1246667888888999999999999999999999866         7


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ..+.++.....|++-.+||.++|.+....|-.+.|.+-+
T Consensus       138 ~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ina  176 (524)
T PF05977_consen  138 PAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINA  176 (524)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999888778777776543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.07  E-value=6.5e-10  Score=97.98  Aligned_cols=116  Identities=17%  Similarity=0.054  Sum_probs=99.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchh
Q 041538           60 KITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQ  139 (225)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (225)
                      +..-++.+-+.+++.-.+.++..|.++||+ |||+++..+++..++...+++.+.                        +
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~------------------------~  120 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR------------------------N  120 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH------------------------H
Confidence            344568888999999999999999999998 999999999888888776666655                        4


Q ss_pred             HHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheec
Q 041538          140 LMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQD  210 (225)
Q Consensus       140 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~  210 (225)
                      ...+.++|++.|+..|-. ..+-++++|.+++++         |+.+++....+..+|.++||.+++++.+
T Consensus       121 F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~---------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY---------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh---------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            455777799999998854 678899999999866         7888999999999999999999999877

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.07  E-value=1.8e-09  Score=96.70  Aligned_cols=134  Identities=11%  Similarity=-0.001  Sum_probs=95.7

Q ss_pred             hHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 041538           45 FMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC  124 (225)
Q Consensus        45 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~  124 (225)
                      ...++|.|+++..| ++.+.+.................+++.||.++.++.+..+.++..++..++....          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            45678888887666 6677777776666655555555556665533767767777666666665555433          


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          125 DYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                                    +...+.+...+.+++.+...|....++.|..|+++         |+++.+.++...++|..+||.+
T Consensus       296 --------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~ig~~l  352 (400)
T PRK11646        296 --------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA---------RGSYMGFSRLGLALGGAIGYIG  352 (400)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc---------chhhhhHHHHHHHHHHHhcccc
Confidence                          22334445556677777777888889999999866         7899999999999999999999


Q ss_pred             hhheeccc
Q 041538          205 IVYIQDNL  212 (225)
Q Consensus       205 ~~~l~~~~  212 (225)
                      .|++.|+.
T Consensus       353 ~G~l~~~~  360 (400)
T PRK11646        353 GGWLFDLG  360 (400)
T ss_pred             hHHHHHHH
Confidence            99998764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.07  E-value=2e-09  Score=93.90  Aligned_cols=140  Identities=9%  Similarity=0.066  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+...+..+......+.+..+.|.|+++.+|+++.+++.......+...++.+++|+++||+ ||||.+..+......+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            44444445555556677888999999999999999999988888999999999999999998 99988877766655555


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .++.+...                    ...+.........+..++.|...+...+...+..|+ +         +++..
T Consensus       306 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~---------~g~~~  355 (366)
T TIGR00886       306 FLVVLGLV--------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A---------TGAVS  355 (366)
T ss_pred             HHHHhcCC--------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h---------cccHH
Confidence            54444320                    001233344445555555565566677777787763 3         67888


Q ss_pred             HHHHHHHhhhh
Q 041538          188 SWYYVSVSASS  198 (225)
Q Consensus       188 ~~~~~~~~ig~  198 (225)
                      +..+...++|+
T Consensus       356 g~~~~~~~~g~  366 (366)
T TIGR00886       356 GLVGAIGNLGG  366 (366)
T ss_pred             HHHHHhccCCC
Confidence            88777777653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.06  E-value=2.2e-09  Score=91.75  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=122.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHH-HHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGF-GCI  101 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~-~~~  101 (225)
                      ...+.+|.+.++.++-.++.+=+.+.-|.+.++.+|+|+.+++.+.+.......+.+++.|.++||+ ||+-.... +++
T Consensus       261 ~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~  339 (459)
T KOG4686|consen  261 TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACI  339 (459)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHH
Confidence            4446678888888887777777777788999999999999999999999999999999999999998 98765443 445


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ....++..+.++.-                       +   -+.++.++|+.......+.++.++...|.+.        
T Consensus       340 ~tl~~H~~l~Ft~l-----------------------s---Py~~m~~lGLsysllAcslWP~va~~vpE~q--------  385 (459)
T KOG4686|consen  340 LTLLGHSGLFFTFL-----------------------S---PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ--------  385 (459)
T ss_pred             HHHHHhhhHHhhhc-----------------------c---HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH--------
Confidence            66677777776541                       1   3445556666655555556777777777644        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccC
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG  213 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g  213 (225)
                       .+++++..+...|+|-.+-|++++.+.|+-|
T Consensus       386 -LGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  386 -LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             -hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence             8999999999999999999999999998765

>PRK09669 putative symporter YagG; Provisional

Probab=99.06  E-value=1.7e-09  Score=97.89  Aligned_cols=162  Identities=10%  Similarity=0.049  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+...+..++............+.|.+..++ ++...........+...++.++.++++||+ |+|+.+..+.+...++.
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            3333334444434333333333333333333 233334445555666777888999999998 99999988876655444


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      ..+.+..                      .++...+++...+.+++.+...+..+++++|..|.++.  +.+++..+..+
T Consensus       309 ~~~~~~~----------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~--~~G~r~~g~~~  364 (444)
T PRK09669        309 ALIFFIP----------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK--RSGRRLDGLVF  364 (444)
T ss_pred             HHHHHhC----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hcCcCcchHHH
Confidence            3333221                      12445566677788999998899999999999884432  12334467788


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                      +.+.+...+|.++|+.+.+++.+..||.
T Consensus       365 s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        365 STNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8899999999999999999988888874

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.06  E-value=1e-09  Score=101.10  Aligned_cols=138  Identities=14%  Similarity=0.028  Sum_probs=113.7

Q ss_pred             HhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccc
Q 041538           53 LCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSC  132 (225)
Q Consensus        53 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +.++.|+...+-+.+.+++.+++.++.+++|.+.||+ .-.+.+....+...+-.++.....                  
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------  132 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------  132 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            3467888889999999999999999999999999998 866666666555544333333322                  


Q ss_pred             ccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee---
Q 041538          133 ESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ---  209 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~---  209 (225)
                            +...+++.+++.|+..+..+|+...+++.+|.+++         |+.-+++++...++|+++|..++..+.   
T Consensus       133 ------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e---------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~  197 (495)
T KOG2533|consen  133 ------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE---------RGLRMGIWYASASLGNIFGGLIAYGVFKLN  197 (495)
T ss_pred             ------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh---------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence                  45669999999999999999999999999999966         788899999999999999999998753   


Q ss_pred             ---cccCcchhhhhhhcc
Q 041538          210 ---DNLGWKVGFGIPAAI  224 (225)
Q Consensus       210 ---~~~g~~~~f~~~~~~  224 (225)
                         ...||||.|.+.+++
T Consensus       198 ~~~~~~gW~~~FiI~G~i  215 (495)
T KOG2533|consen  198 GSGGLAGWRWLFIIEGVI  215 (495)
T ss_pred             CCCCcCCceeehhHHHHH
Confidence               235899999988764

>PRK09669 putative symporter YagG; Provisional

Probab=99.04  E-value=1.5e-09  Score=98.38  Aligned_cols=164  Identities=12%  Similarity=0.120  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHH-HHHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAM-IGFGCITCLLGMV  108 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~-~~~~~~~~~i~~~  108 (225)
                      +..+.....+..+..+++.|+++++|+++.+.+.+..+..+...+..|+.|+++||.   +||||. +..+.+...+...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            344556666667788999999999999999999999999999999999999999993   388665 4455566666655


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      ++...+..                  +.......+++...+...+......+..++.+|+.+++++        |++.++
T Consensus        96 l~f~~p~~------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e--------R~~l~~  149 (444)
T PRK09669         96 LTFYTPDF------------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE--------RHSLQS  149 (444)
T ss_pred             HHHhCCCC------------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH--------HHHHHH
Confidence            44433210                  0122334455555555655556666788899998765332        788777


Q ss_pred             HHHHHHhhhhhhHHHhhhheec-------ccCcchhhhhhh
Q 041538          189 WYYVSVSASSMVAVTFIVYIQD-------NLGWKVGFGIPA  222 (225)
Q Consensus       189 ~~~~~~~ig~~~g~~l~~~l~~-------~~g~~~~f~~~~  222 (225)
                      +.....++|+.+++.+...+..       ..||+..+.+.+
T Consensus       150 ~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        150 WRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            7777777877777654432221       235665555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.04  E-value=5e-09  Score=94.52  Aligned_cols=155  Identities=10%  Similarity=-0.030  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccc-hHHHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGR-YAMIGFGCITCLLGM  107 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~~~~~~~~~~~i~~  107 (225)
                      ..+.+..++....+..+.++++.|+++++|++..+.+++.....+...+++++.|.++||+ || |+.+.++.+...++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence            3455567777777777789999999999999999999999999999999999999999997 76 667776666665555


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      ....+..                        +...+.+.+.+.+++.+...+...++..+...+..+...+. ..|.+.+
T Consensus        84 ~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~-~~~~r~~  138 (418)
T TIGR00889        84 FFAAQVT------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD-FPPIRVM  138 (418)
T ss_pred             HHHHHhc------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc-CCCeeee
Confidence            5544432                        23445566666777655555544444322221110000000 0022222


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                            +++|.++||.+.+.+....+|.
T Consensus       139 ------G~lG~~ig~~l~g~l~~~~~~~  160 (418)
T TIGR00889       139 ------GTIGFIAAMWAVSLLDIELSNI  160 (418)
T ss_pred             ------hhHHHHHHHHHHHHhcccchhH
Confidence                  2467888888888774333344

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.03  E-value=2.8e-09  Score=106.97  Aligned_cols=178  Identities=10%  Similarity=-0.043  Sum_probs=124.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++..+.++.+.+++|.|+++.+|.++.+.+++.....++..++.++.|+++||. ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4555555666666666677788999999999999999999999999999999999999999987 777766555554444


Q ss_pred             HHHHHHHhhh---cCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          106 GMVLLWLTTI---FPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       106 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      +.+.+.+...   .+..... +     ..+.. ...+.+.+++..++.|++.+...+..++++.+..|++.         
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~-~-----~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------  367 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLK-S-----ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH---------  367 (1140)
T ss_pred             HHHHHHhccccccccccccc-c-----hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc---------
Confidence            4433333200   0000000 0     00000 00233456677778888888888889999999999866         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheec-ccCcchhhhh
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQD-NLGWKVGFGI  220 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~-~~g~~~~f~~  220 (225)
                      |+++++..+...+++..+++.+.+.+.+ ..++...|.+
T Consensus       368 ~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~  406 (1140)
T PRK06814        368 RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF  406 (1140)
T ss_pred             ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            7999999999999999999999998863 3455555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.03  E-value=5.8e-09  Score=93.96  Aligned_cols=159  Identities=10%  Similarity=-0.048  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREY-NMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      ..+...+..++......+..++++.|+++.. +.+...+............++.+++++++||+ ++||.+.+..+...+
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            3444444444444444466788999997532 55555555566666678899999999999997 999998888777777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      ...+..+..                       +.  .......+.+++.+..+|...+...+..+++.+         ..
T Consensus       312 ~~ll~~~~~-----------------------~~--~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~---------~~  357 (410)
T TIGR00885       312 LCLGSIFAG-----------------------GH--VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK---------YG  357 (410)
T ss_pred             HHHHHHHcC-----------------------Ch--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---------hh
Confidence            666665533                       11  134555666677777789999999999887442         11


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheeccc------Ccchhhhhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNL------GWKVGFGIPA  222 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~------g~~~~f~~~~  222 (225)
                      ...+.  ...+|+.+.|.+.|++.|+.      +.+..|.+..
T Consensus       358 s~~l~--~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       358 AAGLV--MAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL  398 (410)
T ss_pred             HHHHH--HHHhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence            12222  23499999999999999954      4777777654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=2e-09  Score=98.47  Aligned_cols=167  Identities=19%  Similarity=0.106  Sum_probs=117.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++..++..++.....+....+.+.|.+...+ ++...+.+.....+...++.++.++++||+ |+|+.+.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            555566666666666666666666655554444 555566666666678888899999999998 999999988877766


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.+.+......                   ...+...+++..++.+++.+...+...++++|..|.++-  +.+++..+.
T Consensus       309 ~~~~~~~~~~~-------------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~--~tG~R~~G~  367 (473)
T PRK10429        309 SCGVLLLMGLA-------------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEY--KLGIRCESI  367 (473)
T ss_pred             HHHHHHHHhcc-------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--hcCccchhH
Confidence            66555432100                   012344556666778888888888889999999775421  123344677


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                      .++.+.+...++..+++.+.|++.+..||.
T Consensus       368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888889999999999999999988777764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.01  E-value=6.4e-09  Score=96.69  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=129.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+...+...++..+........+|.+.++.+|.++...+.+.+...++..++.++.+++.+|+ ++++.+..+.+.+.+
T Consensus       218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~  296 (524)
T PF05977_consen  218 PPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFAL  296 (524)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHH
Confidence            3333333334444444445566788999999999999999999999999999999999999997 999998888887777


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+.+..                        +..+.++.+++.|++........+..+-+..|++.         |++
T Consensus       297 ~~~~lal~~------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~---------~GR  343 (524)
T PF05977_consen  297 ALLLLALSP------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV---------RGR  343 (524)
T ss_pred             HHHHHhcch------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HhH
Confidence            776666544                        44556667777888877777777777777778744         899


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +++.++.....+..+|..+.|.+.++.|-+..+.++++
T Consensus       344 v~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~  381 (524)
T PF05977_consen  344 VFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGA  381 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            99999999999999999999999999998888776654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.00  E-value=9.1e-09  Score=91.52  Aligned_cols=154  Identities=11%  Similarity=-0.074  Sum_probs=100.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccch---HHHHH-HHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRY---AMIGF-GCI  101 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr---~~~~~-~~~  101 (225)
                      |.++...+..++....+|++.+|+|.|+++ .|++.. .+....+...   .+.+..++++||. .||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAIL---AGLIGVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHH---HHHHHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            556777778888888999999999999975 678764 4444333333   3344468999987 654   33222 222


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..+....+.+..                        +.........+.+++.....+..+++.+|.+|++.        
T Consensus       266 ~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------  313 (368)
T TIGR00903       266 LIAAFFLALAFEL------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL--------  313 (368)
T ss_pred             HHHHHHHHHHHcc------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh--------
Confidence            2222222222211                        11223333444555666666778889999999966        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhh
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGI  220 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~  220 (225)
                       |+++.++.+..+++++..+|.+.+.+..  |.+..|.+
T Consensus       314 -rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~  349 (368)
T TIGR00903       314 -HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTF  349 (368)
T ss_pred             -cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHH
Confidence             8999999999999999999999987763  44444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.99  E-value=5.4e-09  Score=95.83  Aligned_cols=163  Identities=11%  Similarity=0.040  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc-----chHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVG-----RYAMIGFGCITC  103 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-----rr~~~~~~~~~~  103 (225)
                      ..+....+..... +.....++.++++++|+|+++.+...+....-..+-++ .|.++||+ +     ||+.+.++.++.
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHH
Confidence            3344466667777 77788888999999999999998888888877777544 99999998 6     566666665554


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      . ......+..                     ..+......+.+.+.+++.+....+.-++..|..+ +++      +.+
T Consensus       106 ~-~~~~~~l~~---------------------~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~------~~~  156 (468)
T TIGR00788       106 S-AILYGLLPG---------------------KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP------SAG  156 (468)
T ss_pred             H-HHHHHhccc---------------------ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC------CcC
Confidence            2 111122211                     01123334446777888888888899999999999 443      124


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +...++.+.+.++|..+|+.++|.+.+..+|+..|++.++
T Consensus       157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~  196 (468)
T TIGR00788       157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA  196 (468)
T ss_pred             CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            4445566667789999999999999998899999987654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.98  E-value=4.7e-09  Score=96.03  Aligned_cols=147  Identities=9%  Similarity=0.097  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhH----hhccchHH-HHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLAD----SYVGRYAM-IGFGCITCLLGM  107 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Grr~~-~~~~~~~~~i~~  107 (225)
                      +..+.....+..+.++++.|+++.+|+++.+.+.+..+.-+...+..|+.|+++|    |+ ||||. +..+.+.+.++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            3556667777778899999999999999999999999999999999999999999    65 98554 555666666665


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .+++.....+                  .......+.+...+..++......+..++..|+.+..++        |.+.+
T Consensus        92 ~llf~~p~~~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e--------R~~l~  145 (473)
T PRK10429         92 FLLFSAHLFE------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE--------REQLV  145 (473)
T ss_pred             HHHHcCCCCC------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH--------HHHHH
Confidence            5554322000                  111233344444556677777777888999998754332        88888


Q ss_pred             HHHHHHHhhhhhhHHHhhh
Q 041538          188 SWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~  206 (225)
                      ++-....++|+.+.+.+..
T Consensus       146 ~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429        146 PYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8767777777666555443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.97  E-value=3.6e-08  Score=86.62  Aligned_cols=160  Identities=15%  Similarity=0.089  Sum_probs=126.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |..|.+.+..-..+..+|.+..|+|.+++ +.|+|..++++..++.........+.+-.+++|.-.+|+.......++.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            34566777777888999999999999999 45999999999999999999999999999999876788888888888888


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      |.+-+.+..                       .+.  .+...+++|+|.|+..+....++.+-.+..++        -++
T Consensus       287 G~~G~~~~P-----------------------~~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~~--------Aa~  333 (395)
T COG2807         287 GLVGLLLAP-----------------------GQL--PILWALLLGLGQGGAFPLALTLILLRSSDAAI--------AAA  333 (395)
T ss_pred             HHHHHHHhh-----------------------hhH--HHHHHHHHhCccchHHHHHHHHHHhhcCChHH--------HHH
Confidence            887777654                       111  22225889999999998888888877665442        566


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccC-cchhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFG  219 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~  219 (225)
                      ..++.+..+.+=+..||.+.|++.|.+| |+....
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~  368 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV  368 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence            6666666666666799999999998774 765544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.96  E-value=1.4e-08  Score=90.05  Aligned_cols=71  Identities=11%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             HhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 041538           43 TGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTT  114 (225)
Q Consensus        43 ~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~  114 (225)
                      .....+.|.|+++++|+++.+.+.......+...++.++.|++.||+ |||+.+..+..+..++.+.+.+..
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667888889999999999888888999999999999999998 999999988887777777666543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.96  E-value=1.2e-08  Score=91.12  Aligned_cols=160  Identities=16%  Similarity=0.215  Sum_probs=127.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+..-.+..++-+=+..++...-..|..+++|++..|.........+...++++++|+++||+ |.|+++..+.+...+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            3555555555555555566777777899999999999999999999999999999999999998 999999999887766


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      ..+...+..                        ...-+.+.-++.|...|..++.+-++.+++.|+++         -++
T Consensus       331 ~~~~~~~~~------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k---------~~~  377 (438)
T COG2270         331 AALYLIFLE------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK---------EGR  377 (438)
T ss_pred             HHHHHHHcc------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc---------ccc
Confidence            655444432                        12235555577888899999999999999999966         588


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccC-cchhhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFG  219 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~  219 (225)
                      .|++|+.....++.+||.+.+.+.+.+| -|.++.
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            8999999999999999999998877664 444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.1e-08  Score=93.88  Aligned_cols=165  Identities=14%  Similarity=0.073  Sum_probs=108.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc-------chHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVG-------RYAMIGF   98 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-------rr~~~~~   98 (225)
                      +.+|.+.+..++...+++.+..++|.|+++.+|++..+.++...+-.+...+..+++|.++||...       +||.+-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            455677889999999999999999999999999999999999999999999999999999999822       1222221


Q ss_pred             H-HHHHHHHHHHHHHhhhcCCCCCCccccccccccccccch--hHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCC
Q 041538           99 G-CITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGS--QLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGI  175 (225)
Q Consensus        99 ~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~  175 (225)
                      . ...-.++++.+.+..   .                 ...  ....+.++..+.|+..++..    .-..|.-|+ .  
T Consensus       338 i~~~~~ai~l~~l~~~~---~-----------------~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~apq-~--  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTS---D-----------------EHRLLAVILLTIAIGLSGFNISGFY----KNHQDIAPQ-H--  390 (466)
T ss_pred             HHHHHHHHHHHeeeecC---C-----------------CcchHHHHHHHHHHHHcccchhhhH----hhhhhccch-H--
Confidence            1 112222222222221   0                 011  11112222222222222221    111222222 2  


Q ss_pred             CccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc---cCcchhhhhhhcc
Q 041538          176 KSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN---LGWKVGFGIPAAI  224 (225)
Q Consensus       176 ~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~---~g~~~~f~~~~~~  224 (225)
                             -+...+..++..++++.++|.+.+.+.++   ..|+..|.+.+++
T Consensus       391 -------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i  435 (466)
T KOG2532|consen  391 -------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGI  435 (466)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHH
Confidence                   47778888999999999999999988743   2799999987764

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.94  E-value=2.1e-09  Score=96.84  Aligned_cols=177  Identities=16%  Similarity=0.093  Sum_probs=113.8

Q ss_pred             CCchHHHHHH---HHHHHHHHHHhhHHHHHHHHhH-------hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccch
Q 041538           24 GIRTLPFIIA---NEAFERMASTGFMPNMILYLCR-------EYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRY   93 (225)
Q Consensus        24 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~yl~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr   93 (225)
                      +|+....+++   .-+.+.+..+.+....+.+-.-       +-|+++...+.+.....++..++|++.||++||+ |||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence            4554443333   3334555555554444433221       1346777888899999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCC
Q 041538           94 AMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGD  173 (225)
Q Consensus        94 ~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~  173 (225)
                      +++....++.+++.+...+....+.                 ..+..+.++.-|.++|+|.|+-+|.+..+.+|..-+..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~-----------------~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~  177 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTS-----------------PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT  177 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCC-----------------CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc
Confidence            9999999999998885555431111                 11345668888999999999999999888888655533


Q ss_pred             CCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheeccc-----------Ccchhhhhhhc
Q 041538          174 GIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNL-----------GWKVGFGIPAA  223 (225)
Q Consensus       174 ~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~-----------g~~~~f~~~~~  223 (225)
                      |.     +..+-.++.+.+..-.|+.++-++..-.....           -||..|.+.++
T Consensus       178 RG-----a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v  233 (538)
T KOG0252|consen  178 RG-----AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV  233 (538)
T ss_pred             cc-----ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence            21     11122334445555556655555544332211           27877776553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.92  E-value=7.4e-08  Score=86.10  Aligned_cols=147  Identities=12%  Similarity=-0.012  Sum_probs=105.4

Q ss_pred             HHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041538           39 RMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPH  118 (225)
Q Consensus        39 ~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~  118 (225)
                      ..........++.|+++.+|.++.+.+.......++..++.++.+++.||. ++|+.+..+... .+....+.+..    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh----
Confidence            334445556677889999999999999999999999999999999999997 988887776433 22222222211    


Q ss_pred             CCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhh
Q 041538          119 ARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASS  198 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~  198 (225)
                                          +.....+...+.|++.+...+..+..+.+. ++++.       .++++++..+...+++.
T Consensus       292 --------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~~-------~~g~~~a~~~~~~~~~~  343 (393)
T PRK11195        292 --------------------SLLPAYPLLILIGALGGFFVVPMNALLQHR-GHVLV-------GAGHSIAVQNFNENLAM  343 (393)
T ss_pred             --------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhh-Ccccc-------cchhHHHHHhHHHHHHH
Confidence                                233345566677888887777777777665 33331       16888999999999999


Q ss_pred             hhHHHhhhheecccCcchhhhh
Q 041538          199 MVAVTFIVYIQDNLGWKVGFGI  220 (225)
Q Consensus       199 ~~g~~l~~~l~~~~g~~~~f~~  220 (225)
                      .++..+.+.+ +..|-+..+.+
T Consensus       344 ~~~~~~~~~~-~~~~~~~~~~~  364 (393)
T PRK11195        344 LLMLGLYSLL-VKLGVPVVAVI  364 (393)
T ss_pred             HHHHHHHHHH-HHcCCCHHHHH
Confidence            9999998866 44565554443

>PRK11043 putative transporter; Provisional

Probab=98.92  E-value=4.7e-08  Score=86.90  Aligned_cols=145  Identities=10%  Similarity=0.061  Sum_probs=99.3

Q ss_pred             HHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhc
Q 041538           37 FERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIF  116 (225)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~  116 (225)
                      +....++....+.|.|++ +.|+++.+.+.......+...++.++.+++.||+ |+||.+....+...++...+......
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445566677888876 4799999999887777788888999999999997 99987766555554444433332210


Q ss_pred             CCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhh
Q 041538          117 PHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSA  196 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~i  196 (225)
                      .                   ............+.+++.+...+.......|..|+ +         ++++.++++.....
T Consensus       292 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~g~~~g~~~~~~~~  342 (401)
T PRK11043        292 S-------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A---------TGKAAALQNTLQLG  342 (401)
T ss_pred             c-------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c---------ChHHHHHHHHHHHH
Confidence            0                   11223344455566777777777776666666653 3         68888888888888


Q ss_pred             hhhhHHHhhhheeccc
Q 041538          197 SSMVAVTFIVYIQDNL  212 (225)
Q Consensus       197 g~~~g~~l~~~l~~~~  212 (225)
                      ++..++.+.+.+.+..
T Consensus       343 ~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        343 LCFLASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHHHHHccCCC
Confidence            8888888888887643

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.91  E-value=2.7e-08  Score=91.21  Aligned_cols=128  Identities=13%  Similarity=0.140  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHH
Q 041538           65 TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLY  144 (225)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (225)
                      ..+++.+.++.+++++.+|+++||+ |||..+.+..++..++.+++.++..                     .....+++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~---------------------~~~~e~li  120 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKS---------------------APSFEMLI  120 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHH---------------------hhhHHHHH
Confidence            4467889999999999999999998 9999999999998888888887652                     23578899


Q ss_pred             HHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhh--heecccCcchhhhhhh
Q 041538          145 LAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIV--YIQDNLGWKVGFGIPA  222 (225)
Q Consensus       145 ~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~--~l~~~~g~~~~f~~~~  222 (225)
                      ++|++.|+..|......+-++.|.-|++-         ||........+.++|-.++..++-  .+.+...|++.+....
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~---------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~  191 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNL---------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL  191 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhh---------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence            99999999999999999999999999966         888888889999999999866653  4445557888776654


Q ss_pred             c
Q 041538          223 A  223 (225)
Q Consensus       223 ~  223 (225)
                      +
T Consensus       192 i  192 (485)
T KOG0569|consen  192 I  192 (485)
T ss_pred             H
Confidence            3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.90  E-value=5.2e-08  Score=85.56  Aligned_cols=149  Identities=10%  Similarity=0.020  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      .+...+..++.....+....+.|.++.+++|+++.+.+.+.....+...++.++.|++.||+ ||||.+..+..+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            33333444444455556667778888888999999999999999999999999999999998 99999888876544433


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      ..+......                    +.......++..+.+.+.+...+.....+.|..| +.         +++..
T Consensus       275 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~g~~~  324 (377)
T PRK11102        275 IWLVVSALL--------------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM---------AGTAS  324 (377)
T ss_pred             HHHHHHHHH--------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc---------chHHH
Confidence            333222100                    0112223333333333334444444455566555 33         56666


Q ss_pred             HHHHHH-HhhhhhhHHHhhhh
Q 041538          188 SWYYVS-VSASSMVAVTFIVY  207 (225)
Q Consensus       188 ~~~~~~-~~ig~~~g~~l~~~  207 (225)
                      +..+.. ..+|..+++.+.+.
T Consensus       325 ~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            665443 45667777666543

>TIGR00898 2A0119 cation transport protein

Probab=98.90  E-value=7.6e-09  Score=94.82  Aligned_cols=118  Identities=10%  Similarity=0.036  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHH
Q 041538           69 FFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFG  148 (225)
Q Consensus        69 ~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (225)
                      ....+....+.++.+++.||+ |||+.+.++.++..++.+++.+...                      ...........
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~  418 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV  418 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence            344566677888999999998 9999999888877777666655330                      11122333344


Q ss_pred             HHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhh
Q 041538          149 LMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGI  220 (225)
Q Consensus       149 l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~  220 (225)
                      +.+++.+...+..+.+..|.+|++.         |+++.++.+....+|++++|.+.+ +. ..++...+.+
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~~---------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~  479 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTVV---------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVL  479 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHH---------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHH
Confidence            4455555566778889999999855         899999999999999999999998 43 3344444443

>PRK11462 putative transporter; Provisional

Probab=98.89  E-value=2.5e-08  Score=91.16  Aligned_cols=150  Identities=15%  Similarity=0.190  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHHHH-HHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAMIG-FGCITCLLGMV  108 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~~~-~~~~~~~i~~~  108 (225)
                      ...+.....+..+..+++.|+++..|+++...+.+..+.-+...+.-|+.|+++||.   +||||..+ ++.+...+...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            455566677777788999999999999999999999999999999999999999974   59887655 45566766666


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      +++..+.  .                +.......+.+...+..++......+..++.+|+.+..++        |++.++
T Consensus        96 llf~~p~--~----------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e--------Rt~l~s  149 (460)
T PRK11462         96 LAYSTPD--L----------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ--------RISLQS  149 (460)
T ss_pred             HHHhCCC--C----------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH--------HHHHHH
Confidence            5554321  0                0112233344455556777777777888999998876443        999999


Q ss_pred             HHHHHHhhhhhhHHHhhhhe
Q 041538          189 WYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       189 ~~~~~~~ig~~~g~~l~~~l  208 (225)
                      +.....++|..+++.+...+
T Consensus       150 ~r~~~~~iG~~~~~~~~~pl  169 (460)
T PRK11462        150 WRFVLATAGGMLSTVLMMPL  169 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            98888898888877775443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.4e-08  Score=94.05  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHhhH---HHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           30 FIIANEAFERMASTGFM---PNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        30 ~~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      .+.+..++.....+++.   ..+-..++++++.+..+..|+.++......+..++.+.+.||+ |.|++.+.+.+++.+|
T Consensus        46 vV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   46 VVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHH
Confidence            33344444444333332   2334567889999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHH-HHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          107 MVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLA-FGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      .++..++.                        +.+.+++. -++.|+|.+..+.....++...|++          .|+.
T Consensus       125 ~~lssF~~------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k----------kR~l  170 (509)
T KOG2504|consen  125 LLLSSFAT------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK----------KRAL  170 (509)
T ss_pred             HHHHHHHh------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH----------HHHH
Confidence            99888876                        23334444 4668899999887777778777765          2788


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      +.++......+|..+=|.+..++.+..|||..+.+.+.
T Consensus       171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~  208 (509)
T KOG2504|consen  171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGG  208 (509)
T ss_pred             HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHH
Confidence            88887778888888888888888899999998876553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.85  E-value=6.6e-08  Score=85.82  Aligned_cols=164  Identities=10%  Similarity=-0.086  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHH--HHHHHHHHHHHHHH-HHHhHhhccchHHHHHHHHHH-H
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVL--FFWSAASNFLPILG-AFLADSYVGRYAMIGFGCITC-L  104 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~-G~laDr~~Grr~~~~~~~~~~-~  104 (225)
                      ..+....+.+...+..+.+.+|.|+++ .|.|+++.+...  ........+..++. ++.+||+ ||||...+...+. .
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence            344556677777777788999999985 599999999863  44455555555555 6689997 9999876554332 2


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +....+....  +.                  ......+.....+..+..+...+...++..|..++++         ++
T Consensus        82 ~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~---------~~  132 (390)
T TIGR02718        82 ACLASLALVG--PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT---------LA  132 (390)
T ss_pred             HHHHHHHcCC--cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---------hh
Confidence            1222222111  00                  0111122233333434444444555555555444422         56


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      ...+....+..+|..+|+...+++.++.||+..|++.++
T Consensus       133 ~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~  171 (390)
T TIGR02718       133 KGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVAC  171 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            666666677789999999888899999999999987764

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.4e-08  Score=89.98  Aligned_cols=165  Identities=17%  Similarity=0.140  Sum_probs=132.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+...++..++...++....+....|.+-.++.++.+.............++.++...+.+|+ |+|+++..+.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4444455567777777777777778888888999999998888888888888899999999998 999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..++.+..                      .++..+.++...+.++|.+...+...++++|..+-++-  +.+++.-+.
T Consensus       315 ~~~~~~f~~----------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~--~TG~R~eGi  370 (467)
T COG2211         315 GYLLLYFTP----------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEW--KTGVRREGI  370 (467)
T ss_pred             HHHHHHhhc----------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHH--HhCCCchhh
Confidence            999888865                      23567788888889999999999999999998774431  133444577


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                      .++.+.+..=+|.+++..+.|++....||.
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            777888888899999988888887776664

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.84  E-value=3e-08  Score=90.63  Aligned_cols=159  Identities=15%  Similarity=0.110  Sum_probs=120.5

Q ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhH-hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccc-hH
Q 041538           17 INKNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCR-EYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGR-YA   94 (225)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~   94 (225)
                      +.+.++.+||.+++..+..++...-+....+..-+|+++ +.+-+.+..|+++....++..+..+..|+...|. ++ |+
T Consensus        25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~  103 (488)
T KOG2325|consen   25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKK  103 (488)
T ss_pred             cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCccc
Confidence            334457899999998888888888776666666688885 5788888999999999999999999999999997 75 77


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCC
Q 041538           95 MIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDG  174 (225)
Q Consensus        95 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~  174 (225)
                      .+..+++.+++|.++.......|.                   ....++.++|++.|+|.+. ....-.++++.-..++ 
T Consensus       104 Pli~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d-  162 (488)
T KOG2325|consen  104 PLIVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED-  162 (488)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc-
Confidence            888889999999988844332221                   2678899999999999885 4667888888766656 


Q ss_pred             CCccchhhHHHHHHHHHHHHhhhhhhHHHhh
Q 041538          175 IKSKSEGALKSYFSWYYVSVSASSMVAVTFI  205 (225)
Q Consensus       175 ~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~  205 (225)
                              |.++++....+..+|..+||.+.
T Consensus       163 --------R~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  163 --------RPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             --------hHHHHHHhhhHHHHHHHHhHHHH
Confidence                    55555555444444444444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.83  E-value=5.5e-08  Score=90.18  Aligned_cols=163  Identities=14%  Similarity=0.115  Sum_probs=126.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHH--HHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGF--GCITC  103 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~--~~~~~  103 (225)
                      |..+...+...+..++++....++|.|.. ..++++.++..+.++..+...++.++.|+++|+. ..++....  +.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45555666777788888888899999998 8899999999999999999999999999999997 64343333  33333


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .+....+.+..                        ....++...+++|+..|......+..+.|..+.++         .
T Consensus       376 gl~~~~~p~~~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~---------l  422 (509)
T KOG2504|consen  376 GLARLFLPFAT------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK---------L  422 (509)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh---------c
Confidence            33332233222                        34556667777888888777766678889888855         7


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~  223 (225)
                      ...+++......++..+||.++|++.|..| |...|...++
T Consensus       423 ~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~  463 (509)
T KOG2504|consen  423 SNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGL  463 (509)
T ss_pred             chHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcCh
Confidence            889999999999999999999999999887 8888877654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.81  E-value=1.6e-07  Score=83.26  Aligned_cols=143  Identities=10%  Similarity=0.067  Sum_probs=96.2

Q ss_pred             HHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 041538           42 STGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARP  121 (225)
Q Consensus        42 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~  121 (225)
                      ........+.|+++.+|+++.+.+........+..++.++.+++.||+ +++...  ....+.++...+.... ..    
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~-~~----  294 (394)
T PRK11652        223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPG-WF----  294 (394)
T ss_pred             HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH-Hh----
Confidence            333445567788888999999998888887888888888888999987 733322  2222222222222111 00    


Q ss_pred             CccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhH
Q 041538          122 LACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVA  201 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g  201 (225)
                                    ...+...++....+.+++.+...+.......|.+|+ +         ++...+..+...++|+.++
T Consensus       295 --------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---------~g~~~~~~~~~~~lg~~~~  350 (394)
T PRK11652        295 --------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L---------AGTAGALLGGLQNIGSGLA  350 (394)
T ss_pred             --------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---------chHHHHHHHHHHHHHHHHH
Confidence                          011234456666778888888888888888888773 3         5777788888889999999


Q ss_pred             HHhhhheecccCcch
Q 041538          202 VTFIVYIQDNLGWKV  216 (225)
Q Consensus       202 ~~l~~~l~~~~g~~~  216 (225)
                      +.+++++.++..+..
T Consensus       351 ~~~~~~~~~~~~~~~  365 (394)
T PRK11652        351 ALLSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHHHccCCchHHH
Confidence            999998876544443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.81  E-value=1.4e-08  Score=91.65  Aligned_cols=163  Identities=15%  Similarity=0.140  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhH----hhccchHHHH-HHHHHHHHHHHH
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLAD----SYVGRYAMIG-FGCITCLLGMVL  109 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Grr~~~~-~~~~~~~i~~~~  109 (225)
                      .+...........+++.|+++.+|+++...+.+..+..+...+..|+.|.++|    |+ ||||..+ .+.+...++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            34555555566778899999999999999999999999999999999999999    76 9888654 566777777776


Q ss_pred             HHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH
Q 041538          110 LWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW  189 (225)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~  189 (225)
                      +....  |.              ..+.......+.+...+..++......+..++..|..+.+++        |.+..++
T Consensus        89 lf~~~--p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~--------R~~l~~~  144 (428)
T PF13347_consen   89 LFSPP--PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE--------RTRLSSW  144 (428)
T ss_pred             hhccc--cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh--------hhhHHHH
Confidence            66541  10              000111233345555666788888888899999999886554        8888888


Q ss_pred             HHHHHhhhhhhHHHhhhheeccc-------Ccchhhhhhh
Q 041538          190 YYVSVSASSMVAVTFIVYIQDNL-------GWKVGFGIPA  222 (225)
Q Consensus       190 ~~~~~~ig~~~g~~l~~~l~~~~-------g~~~~f~~~~  222 (225)
                      -.....+|..+...+.+.+.+..       +|++...+.+
T Consensus       145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~  184 (428)
T PF13347_consen  145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA  184 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence            77777777766666665544322       4666555443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.79  E-value=3.6e-10  Score=101.92  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHH
Q 041538           63 EGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLML  142 (225)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (225)
                      +..+..+...++..++.+++|+++||+ |||+.+.++.++..++.++..++..                     ..+...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~  104 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS---------------------YNNFWM  104 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc---------------------cccccc
Confidence            457788999999999999999999998 9999999999999999887777551                     124566


Q ss_pred             HHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc---cCcchhhh
Q 041538          143 LYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN---LGWKVGFG  219 (225)
Q Consensus       143 ~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~---~g~~~~f~  219 (225)
                      +.+++.+.|++.|+..+..+.++.|..|++.         |+....+.+....+|..++..+...+.+.   .+||..+.
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~---------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~  175 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH---------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLI  175 (451)
T ss_pred             ccccccccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999866         77777788888888888877766544333   34888876


Q ss_pred             hhhc
Q 041538          220 IPAA  223 (225)
Q Consensus       220 ~~~~  223 (225)
                      +..+
T Consensus       176 ~~~~  179 (451)
T PF00083_consen  176 FGAI  179 (451)
T ss_pred             cccc
Confidence            6543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.75  E-value=9.6e-08  Score=84.39  Aligned_cols=146  Identities=10%  Similarity=-0.001  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhc--C-----------------CchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREY--N-----------------MKITEGTNVLFFWSAASNFLPILGAFLA   86 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~-----------------~~~~~~~~~~~~~~~~~~i~~~~~G~la   86 (225)
                      |..+..+.+.+.+.+.||+..-...-..|.+.  |                 .+..+.-.=+.+.+...+-+.++.+++-
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            34455666888888899988766555544332  1                 1111112223455667777899999999


Q ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhh
Q 041538           87 DSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA  166 (225)
Q Consensus        87 Dr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  166 (225)
                      ||+ |||+++....+++.+..+++.....                   +.. --.+++.++.....+..    +.+.+-.
T Consensus       406 erl-GRKkTMal~l~~f~iflfll~~c~~-------------------rn~-~tvllf~arafisg~fq----vaYvYtP  460 (528)
T KOG0253|consen  406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-------------------RNA-YTVLLFTARAFISGAFQ----VAYVYTP  460 (528)
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHhcC-------------------cch-hHHHHHHHHHHHhchhe----EEEEecC
Confidence            997 9999999999888877766665331                   011 12345556666554433    4566789


Q ss_pred             hccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhh
Q 041538          167 DQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI  205 (225)
Q Consensus       167 ~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~  205 (225)
                      |.||+..         |+.+.+.......+|+++.|.++
T Consensus       461 EVyPTav---------RatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  461 EVYPTAV---------RATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             cccchhh---------hhcchhhhhhHHhhhhhhhhHHH
Confidence            9999944         89999999999999999999998

>PRK11462 putative transporter; Provisional

Probab=98.74  E-value=2.3e-07  Score=84.88  Aligned_cols=156  Identities=8%  Similarity=0.022  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHh
Q 041538           34 NEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLT  113 (225)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~  113 (225)
                      ..++..............|.+-.+|. +...+.+.....+...++.+++++++||+ |+|+.+..+.....+....+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~  313 (460)
T PRK11462        236 LTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV  313 (460)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh
Confidence            33344343333333333334433443 33345566777788888999999999998 99888765554433333333222


Q ss_pred             hhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 041538          114 TIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVS  193 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~  193 (225)
                      .                      ..+...+++...+.+++.+...+...++++|..+-++-  +.+++.-+..++.+.+.
T Consensus       314 ~----------------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~--~tG~r~~g~~~a~~~f~  369 (460)
T PRK11462        314 P----------------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEW--CNGKRLTGISFAGTLFV  369 (460)
T ss_pred             c----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH--hcCCCchHHHHHHHHHH
Confidence            1                      11222233444555666666666677888888774321  12333345556777788


Q ss_pred             HhhhhhhHHHhhhheecccCcc
Q 041538          194 VSASSMVAVTFIVYIQDNLGWK  215 (225)
Q Consensus       194 ~~ig~~~g~~l~~~l~~~~g~~  215 (225)
                      ..+|..+|+.+.+++.+..||.
T Consensus       370 ~Klg~alg~~i~g~iL~~~Gy~  391 (460)
T PRK11462        370 LKLGLAFGGALIGWMLAYGGYD  391 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999887766764

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=6.7e-07  Score=82.13  Aligned_cols=163  Identities=13%  Similarity=0.066  Sum_probs=110.4

Q ss_pred             CchHHHHHHHHHHHHH-HHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERM-ASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      ++.+...+...+...+ +.+.+..+ .+.+.++.|++..++.++.........+.++++.++.||+ |||+.++.+..++
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Y-st~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~  345 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFY-STSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM  345 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            3445555555555555 33443333 3445557799999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHH-HHHHHHHHHHHhCcc-cchhhhhhhhhccCCCCCCCccchh
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLM-LLYLAFGLMSLGGGG-IRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~-~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      .+..+++.....+..                ....... ..+++..+..+..+. ..|...-+.+|++|++.        
T Consensus       346 ~~~~~~~~~~~~l~~----------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--------  401 (485)
T KOG0569|consen  346 AVALLLMSIALFLSN----------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--------  401 (485)
T ss_pred             HHHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc--------
Confidence            888777776542221                0001111 223334433333222 35778889999999977        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCc
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGW  214 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~  214 (225)
                       |..+.++.+....+...+-......+.+..|-
T Consensus       402 -R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~  433 (485)
T KOG0569|consen  402 -RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP  433 (485)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             77777777777766666666666666666553

>PRK09848 glucuronide transporter; Provisional

Probab=98.70  E-value=2.9e-07  Score=83.43  Aligned_cols=151  Identities=11%  Similarity=0.087  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHHH-HHHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAMI-GFGCITCLLGMV  108 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~~-~~~~~~~~i~~~  108 (225)
                      ...+.....+..+.++++.|+++.+|+++.+.+.+.....+...+..++.|+++||.   +||||.. ..+.+...+...
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            355666777767778888999999999999999999999999999999999999995   3777755 555554544444


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFS  188 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  188 (225)
                      ++..... ..                .........+....+.+++.+...++..++..+..++.++        |...++
T Consensus        95 ~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~--------r~~~~~  149 (448)
T PRK09848         95 LVFWVPT-DW----------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS--------RARLGA  149 (448)
T ss_pred             HHHhCcC-CC----------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH--------HHHHHH
Confidence            3322110 00                0111233344445566777777777777777776655332        566554


Q ss_pred             HHHH-----HHhhhhhhHHHhhhhe
Q 041538          189 WYYV-----SVSASSMVAVTFIVYI  208 (225)
Q Consensus       189 ~~~~-----~~~ig~~~g~~l~~~l  208 (225)
                      +-..     ..+++..++|.+.+..
T Consensus       150 ~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        150 ARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4333     2345566677766643

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.69  E-value=7.6e-07  Score=80.26  Aligned_cols=162  Identities=10%  Similarity=0.018  Sum_probs=120.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.+....+..++..........+.+.|+++.-+.+....+...++..+.-...-...+++-.|+ |.|+++.++.+.+++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV  285 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3344444455555655555677778899976657777777777777777777778899999997 999999999988887


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      =..++..... |.                  .....+..++..+.|+..+....+...++.+..|++.         |++
T Consensus       286 R~~l~a~~~~-~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~---------~at  337 (400)
T PF03825_consen  286 RWLLYAYFSD-PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL---------RAT  337 (400)
T ss_pred             HHHHHHHhcC-Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc---------hHH
Confidence            7777776520 00                  0112233444567898888888999999999999866         788


Q ss_pred             HHHHHHH-HHhhhhhhHHHhhhheecccCcch
Q 041538          186 YFSWYYV-SVSASSMVAVTFIVYIQDNLGWKV  216 (225)
Q Consensus       186 ~~~~~~~-~~~ig~~~g~~l~~~l~~~~g~~~  216 (225)
                      +.++++. ...+|..+|..++|++.|+.|-+.
T Consensus       338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            8888766 568999999999999999877543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.61  E-value=1.2e-06  Score=77.25  Aligned_cols=153  Identities=17%  Similarity=0.137  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHh
Q 041538           34 NEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLT  113 (225)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~  113 (225)
                      +.+=.+-...++ ..+..-+++++|++.+.++.+.++-.+...+..++..+++.|+ |.+|.+..+.++..+|..+=.. 
T Consensus        20 ia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~-   96 (395)
T COG2807          20 IAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSL-   96 (395)
T ss_pred             HHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhc-
Confidence            333344454443 3344567889999999999999999999999999999999998 9999999998888777643322 


Q ss_pred             hhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 041538          114 TIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVS  193 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~  193 (225)
                                              .+...++.+-.+.|.|.+..+...++++-+-||++.          +..++.|..+
T Consensus        97 ------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~----------~~mtglYs~s  142 (395)
T COG2807          97 ------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV----------GLMTGLYSTS  142 (395)
T ss_pred             ------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch----------hhHHhHHHHH
Confidence                                    134567888888888888888999999999999744          6677888889


Q ss_pred             HhhhhhhHHHhhhheeccc-Ccchhhhhhhc
Q 041538          194 VSASSMVAVTFIVYIQDNL-GWKVGFGIPAA  223 (225)
Q Consensus       194 ~~ig~~~g~~l~~~l~~~~-g~~~~f~~~~~  223 (225)
                      .++++++++.++..+.++. ||+..+.+.+.
T Consensus       143 l~~~aaLaa~lavpla~~~~gW~~aL~~WAl  173 (395)
T COG2807         143 LGAGAALAAALAVPLAQHSGGWRGALGFWAL  173 (395)
T ss_pred             HHHHHHHHhhhhhHHHHhhccHHHHHHHHHH
Confidence            9999999999999888887 79988766553

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.58  E-value=1.7e-06  Score=77.33  Aligned_cols=146  Identities=17%  Similarity=0.205  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTT  114 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~  114 (225)
                      .+....+++.=-..+=+|--+.+|++..|++.....+..+..++-.+.|++..|..+++|...+++..++++..++.++.
T Consensus       217 l~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~  296 (403)
T PF03209_consen  217 LFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG  296 (403)
T ss_pred             HHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444332333447788899999999999999999999999999999999656999999999999998888777765


Q ss_pred             hcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHH
Q 041538          115 IFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSV  194 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~  194 (225)
                                           ...+.+++..+.+++|++.|.......+.+.|+.++++         -+...+.+....
T Consensus       297 ---------------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~---------aG~~mG~WGaaQ  346 (403)
T PF03209_consen  297 ---------------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR---------AGLFMGAWGAAQ  346 (403)
T ss_pred             ---------------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc---------hhHHHHHHHHHH
Confidence                                 12356789999999999999988888888888887755         577788888888


Q ss_pred             hhhhhhHHHhhhheec
Q 041538          195 SASSMVAVTFIVYIQD  210 (225)
Q Consensus       195 ~ig~~~g~~l~~~l~~  210 (225)
                      .++-.+|-.++|.+.|
T Consensus       347 A~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  347 AIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888887655

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.58  E-value=1.7e-07  Score=84.48  Aligned_cols=75  Identities=13%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      +..+......+...+.+....++++.|++++.|+|.+|.+.+.+.......+.+++.|.++||+ |.||.++....
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~   81 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIA   81 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHH
Confidence            4566666666666777777899999999999999999999999999999999999999999997 97776555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.55  E-value=8.6e-07  Score=80.92  Aligned_cols=157  Identities=15%  Similarity=0.204  Sum_probs=121.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHH-HHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAM-IGFGCI  101 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~-~~~~~~  101 (225)
                      |..+--....+.....+..+..+++.|.++.+|+++..++.+..+.-+...+.-|+.|.+.||.   +||||. ++.+.+
T Consensus        12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            3333334467777778888899999999999999999999999999999999999999999986   587776 455556


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ..++...+++.+...                  +.+.+....++..++.+++......+..++.+++.+..++       
T Consensus        92 p~~i~~~l~F~~p~~------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-------  146 (467)
T COG2211          92 PFAIVAVLLFITPDF------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-------  146 (467)
T ss_pred             HHHHHHHHHHcCCCc------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-------
Confidence            777777777665411                  1234556677777888888888888888999888776543       


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                       |.+..++-....++|..+...+.+.+
T Consensus       147 -R~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211         147 -RASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99999998888888877666555444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.47  E-value=3.6e-06  Score=75.78  Aligned_cols=162  Identities=14%  Similarity=0.031  Sum_probs=99.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |.++...+..++....++.+..+.|.++++.+|+++.+.++.......+..++..+.+.+.+|. +++|.+........+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4555555555666666677778889999999999999999887777777777777777765554 455554444444444


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +..++......                   ..++....++...+.++|.+...+......-  .+.+.+        +++
T Consensus       297 g~~l~~~~~~~-------------------~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~--------~G~  347 (413)
T PRK15403        297 GLALLIVGNLL-------------------WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP--------KGT  347 (413)
T ss_pred             HHHHHHHHHHH-------------------ccccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC--------CcH
Confidence            54444332100                   0112233456777778887777766664332  333222        466


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhh
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGF  218 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f  218 (225)
                      ..+.++.....+...++...+++.++ +-...|
T Consensus       348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~  379 (413)
T PRK15403        348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPF  379 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHH
Confidence            66666666666677777777877554 334444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.46  E-value=1.8e-06  Score=77.02  Aligned_cols=158  Identities=13%  Similarity=0.100  Sum_probs=122.0

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      .|.++...+..|+--..=-.+-++++.|+.+..+.++.++....+.+..+.+++.+++-++-.|+ ...|.+.+.++...
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~i  313 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAI  313 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            35555555555555544456678899999998999999999999999999999999999999997 99999988876665


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +.++...++.                        + .+...+..+.|...+..+|...+...+..|.+..        .+
T Consensus       314 ll~~~~~l~~------------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--------~~  360 (422)
T COG0738         314 LLLLAVALIG------------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--------VG  360 (422)
T ss_pred             HHHHHHHHhc------------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--------cc
Confidence            5555555543                        1 3355566778888899999999999999995443        33


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFG  219 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~  219 (225)
                      +   ..-.+..+|+++-|.+.|++.|..|-+..+.
T Consensus       361 s---~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         361 S---GLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             c---eeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            3   2334678999999999999999988776654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.41  E-value=6.7e-06  Score=74.15  Aligned_cols=116  Identities=17%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHH
Q 041538           31 IIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLL  110 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l  110 (225)
                      +....++..+.+..+.++++.|+++ .|+|..|.+.+.+...+...+.+++.|+++||...+||.+.+..+...+.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4445666677777788999999996 579999999999999999999999999999998346666666555554444333


Q ss_pred             HHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCC
Q 041538          111 WLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEK  171 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~  171 (225)
                      ....                        +...+....++..+......|...++..+...+
T Consensus        86 ~~~~------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   86 AFSS------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             HHhc------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence            3322                        233344555566666666667777777666553

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.39  E-value=4.3e-06  Score=57.98  Aligned_cols=69  Identities=23%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           33 ANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      ...++...+...+.++++.|+++ .|+++.|.+.+..+.-....+++++.|+++||+ +|+|.+......+
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            34555666677788999999995 899999999999999999999999999999998 9999887765543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.39  E-value=7e-06  Score=74.07  Aligned_cols=166  Identities=10%  Similarity=0.074  Sum_probs=122.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYN---MKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      .|..|...+........|+..-.-.+.|.+..++   .+....+.+.+...+.-.+.-.+..++-+|+ |.|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            4566665555555555555554456777775443   3445567777888888888888999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ..++=.....+++                        ++..+.....+.++-.+..-....-++++.+|++-        
T Consensus       298 i~~iRi~~~~~~~------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl--------  345 (412)
T PF01306_consen  298 IMAIRIIGSGFAT------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL--------  345 (412)
T ss_dssp             HHHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG--------
T ss_pred             HHHHHHHHHhhhc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH--------
Confidence            8877766666654                        45667888888888888888888899999999833        


Q ss_pred             hHHHHHHHH-HHHHhhhhhhHHHhhhheecccCcchhhhhhhcc
Q 041538          182 ALKSYFSWY-YVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAAI  224 (225)
Q Consensus       182 ~r~~~~~~~-~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~~  224 (225)
                       .++...+. +++..+|..+.+.++|++.|+.|++..|++.+.+
T Consensus       346 -sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~i  388 (412)
T PF01306_consen  346 -SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLI  388 (412)
T ss_dssp             -HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHH
Confidence             56666663 6788999999999999999999999888766543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.38  E-value=2e-05  Score=64.65  Aligned_cols=143  Identities=21%  Similarity=0.262  Sum_probs=99.5

Q ss_pred             HHHHHHHhHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 041538           47 PNMILYLCREYNMKI--TEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC  124 (225)
Q Consensus        47 ~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~  124 (225)
                      ...+.+.. +.+.+.  .+.++..........++.++.|.++||+ |||+.+..+.....++.....+...         
T Consensus        23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            33444443 445454  5788888888888899889999999998 9998888777664555444444330         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHH-HHhhhhhhHHH
Q 041538          125 DYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYV-SVSASSMVAVT  203 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~~g~~  203 (225)
                                   .....+...+...+++.+...+...+++.|.+|+ .       +.|+...+.... ...++..++|.
T Consensus        92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~  150 (338)
T COG0477          92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-------TERGLAVGLVTLGAGALGLALGPL  150 (338)
T ss_pred             -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         2355677777778888888889999999999887 2       116777777666 57777778876


Q ss_pred             hhhheecc--cCcchhhhhh
Q 041538          204 FIVYIQDN--LGWKVGFGIP  221 (225)
Q Consensus       204 l~~~l~~~--~g~~~~f~~~  221 (225)
                      +.+.+...  .+|+..|...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477         151 LAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             HHHHHHHHHhcchHHHHHHH
Confidence            66655443  4677755543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.36  E-value=7.7e-06  Score=75.19  Aligned_cols=166  Identities=8%  Similarity=0.033  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhHhcCCchhH----HHHHHHHHHHHHHHHHHHHHH----HhHhhccchHHH--HHHHH
Q 041538           32 IANEAFERMASTGFMPNMILYLCREYNMKITE----GTNVLFFWSAASNFLPILGAF----LADSYVGRYAMI--GFGCI  101 (225)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~----laDr~~Grr~~~--~~~~~  101 (225)
                      .+...+....+....+.++.|.+++.+.+...    .++..++..+...+.+++..+    +.||-.+.+...  .++.+
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~  357 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML  357 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            33444455566666777888887765544322    556666666677776666554    444411233333  66777


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      +..++...+.+......               .....++..+....++.++|.....|...+++.+..|++.        
T Consensus       358 l~~~~~~~~~~~~~~~~---------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~--------  414 (475)
T TIGR00924       358 FCGASFLTFAASIWFAD---------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL--------  414 (475)
T ss_pred             HHHHHHHHHHHHHhhcC---------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH--------
Confidence            77777766665321100               0012356778889999999999999999999999999855        


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                       |++..+.++....+|..+++.+.....+..+|...|...
T Consensus       415 -~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~  453 (475)
T TIGR00924       415 -MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKI  453 (475)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence             899999999999999999999988776666676655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.34  E-value=2.1e-05  Score=69.39  Aligned_cols=139  Identities=18%  Similarity=0.109  Sum_probs=96.3

Q ss_pred             hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccc
Q 041538           54 CREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCE  133 (225)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++|+++.|...+.........+...+.|.++||+ ||||..+..++++.+.++..-.                     
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~---------------------  118 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS---------------------  118 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc---------------------
Confidence            357899999999999999999999999999999998 9999999999998877753221                     


Q ss_pred             cccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHH-HHHhhhhhhHHHhhhheeccc
Q 041538          134 SATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYY-VSVSASSMVAVTFIVYIQDNL  212 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~g~~l~~~l~~~~  212 (225)
                          .+...+++++++.|++......+.=+.+.....+++-  ++  +-.+..++... +.+.+-++.+..++.++.+..
T Consensus       119 ----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~--~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~  190 (354)
T PF05631_consen  119 ----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGF--PQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWF  190 (354)
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--Ch--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence                2456799999999998877665555544433333221  11  22455555444 334455556666666776665


Q ss_pred             Cc--chhhhhhh
Q 041538          213 GW--KVGFGIPA  222 (225)
Q Consensus       213 g~--~~~f~~~~  222 (225)
                      |.  ..+|..+.
T Consensus       191 ~~g~vaPF~~a~  202 (354)
T PF05631_consen  191 GFGPVAPFDAAI  202 (354)
T ss_pred             CCCCcchHHHHH
Confidence            44  56665543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.18  E-value=2.6e-05  Score=65.95  Aligned_cols=111  Identities=18%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             HHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 041538           41 ASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHAR  120 (225)
Q Consensus        41 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~  120 (225)
                      ..|.+..+. ..+++.+|+|.+|...+.+...++..++ ++.|.+.|++ |++.++.++.+...+|..++++.-.-..  
T Consensus        17 t~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i--   91 (250)
T PF06813_consen   17 TTYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI--   91 (250)
T ss_pred             cccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence            345554444 4578899999999999999999998875 8889999998 9999999999999999998888641100  


Q ss_pred             CCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCC
Q 041538          121 PLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEK  171 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~  171 (225)
                                     ...+.+.+.+...+.+.+.+...........+.||.
T Consensus        92 ---------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   92 ---------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             ---------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence                           012344455555555555444444444445588986

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.16  E-value=1.4e-05  Score=73.88  Aligned_cols=162  Identities=17%  Similarity=0.101  Sum_probs=102.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHHHHHHHH-
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAMIGFGCI-  101 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~~~~~~~-  101 (225)
                      +.+|...+..++.....|++..|+|.|+++..|++..++..+.....++..++.+++|+++||.   ..+|-.+..... 
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3456667788888889999999999999997789999999999999999999999999999993   144444443333 


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ...++.+.+....                        .......+.+....+.....++...-.++....+.+       
T Consensus       353 ~~~~g~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-------  401 (495)
T KOG2533|consen  353 YAIIGAISLLAAA------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-------  401 (495)
T ss_pred             HHHHHHHHHHhhc------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchHH-------
Confidence            3334433333322                        112223322333333333334444445555544443       


Q ss_pred             hHHHHHHHHHHHH-hhhhhhHHHhhhheecccCcchhhh
Q 041538          182 ALKSYFSWYYVSV-SASSMVAVTFIVYIQDNLGWKVGFG  219 (225)
Q Consensus       182 ~r~~~~~~~~~~~-~ig~~~g~~l~~~l~~~~g~~~~f~  219 (225)
                       +.+..+.+..+. +.+.+.+++..+.....++|...|.
T Consensus       402 -~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~  439 (495)
T KOG2533|consen  402 -ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFY  439 (495)
T ss_pred             -hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHH
Confidence             444445544444 4444555555666666678888773

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.12  E-value=2.9e-05  Score=70.73  Aligned_cols=147  Identities=17%  Similarity=0.123  Sum_probs=105.0

Q ss_pred             HHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh--cc-chHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 041538           48 NMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY--VG-RYAM-IGFGCITCLLGMVLLWLTTIFPHARPLA  123 (225)
Q Consensus        48 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~--~G-rr~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~  123 (225)
                      -...|+++++|+++.+...+......-..+ -++.|.++|.+  .| |||. +.++.++.+++...+.....        
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~--------   81 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA--------   81 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence            344678999999999988776666554444 68889999998  45 3444 45566666555555554331        


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHH
Q 041538          124 CDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVT  203 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~  203 (225)
                                  ...+.....+.+.+..+|........-++..|....+..      . |+...++.+...++|++++..
T Consensus        82 ------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~------~-~g~lqS~~~~~~~~G~lv~~~  142 (433)
T PF03092_consen   82 ------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE------S-RGDLQSFVWGVRSVGSLVGSL  142 (433)
T ss_pred             ------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc------h-hHHHHHHHHHHHHHHHHHHHH
Confidence                        112333455566677788888888888888888765442      2 788888888999999999999


Q ss_pred             hhhheecccCcchhhhhhh
Q 041538          204 FIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       204 l~~~l~~~~g~~~~f~~~~  222 (225)
                      +.|.+.+..+++..|.+.+
T Consensus       143 l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen  143 LSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             hhhhhhhcCCCeEEehHHH
Confidence            9999999889988887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00788 fbt folate/biopterin transporter

Probab=98.09  E-value=4.5e-06  Score=76.63  Aligned_cols=137  Identities=10%  Similarity=-0.105  Sum_probs=103.3

Q ss_pred             HHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCcccccccc
Q 041538           52 YLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTT-IFPHARPLACDYTLRD  130 (225)
Q Consensus        52 yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~-~~~~~~~~~~~~~~~~  130 (225)
                      +.++.+|+++.+.+.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.....+.. +.+...          
T Consensus       278 ~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~----------  346 (468)
T TIGR00788       278 ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF----------  346 (468)
T ss_pred             EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc----------
Confidence            33457899999999999999999999999999999997 999999999888877665443211 111000          


Q ss_pred             ccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheec
Q 041538          131 SCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQD  210 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~  210 (225)
                           ............++.+++.+....+...++.+..|++.         +++.++++....++|..+++.+++++.+
T Consensus       347 -----gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~---------egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       347 -----GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC---------ESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             -----CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc---------eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00112234444566667767767778899999999866         6899999999999999999999999988


Q ss_pred             ccC
Q 041538          211 NLG  213 (225)
Q Consensus       211 ~~g  213 (225)
                      +.|
T Consensus       413 ~~g  415 (468)
T TIGR00788       413 TIG  415 (468)
T ss_pred             HcC
Confidence            777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.09  E-value=3.1e-05  Score=68.85  Aligned_cols=141  Identities=11%  Similarity=0.033  Sum_probs=102.7

Q ss_pred             hHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 041538           45 FMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC  124 (225)
Q Consensus        45 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~  124 (225)
                      ....+.+-++..-+.+..+...+......+..+++...|.++|++ |||+...+..+.-.+.-++-..            
T Consensus        96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~------------  162 (528)
T KOG0253|consen   96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGA------------  162 (528)
T ss_pred             HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcC------------
Confidence            344444556667788888899999999999999999999999998 9999888775544333332222            


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          125 DYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                                  +.+...+++.+.+.++|.|+ .|...++-.|..|...|         ..-.... +...+|......+
T Consensus       163 ------------spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r---------~~~~V~~-~~waig~v~ea~l  219 (528)
T KOG0253|consen  163 ------------SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR---------WLLTVMS-FFWAIGQVFEALL  219 (528)
T ss_pred             ------------CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC---------CcchhHH-HHHHHHHHHHHHH
Confidence                        22456688889999999998 78899999999998663         3323233 5566777777666


Q ss_pred             hhheecccCcchhhhhh
Q 041538          205 IVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       205 ~~~l~~~~g~~~~f~~~  221 (225)
                      .=.+..++||+|-....
T Consensus       220 aw~vm~~~gwr~~l~~~  236 (528)
T KOG0253|consen  220 AWGVMSNFGWRYLLFTS  236 (528)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            66666778998866544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.00  E-value=0.00019  Score=68.49  Aligned_cols=82  Identities=15%  Similarity=0.259  Sum_probs=65.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhHhhcc--chHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSA-ASNFLPILGAFLADSYVG--RYAMIGFGCIT  102 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~G--rr~~~~~~~~~  102 (225)
                      |.++...+..++....++++.+++|.|+++.+|+++.+++.+.....+ ...++.+++|++.||+ +  .|+.+.++.++
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~  408 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL  408 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence            445566677888888899999999999999999999999998877665 5678999999999997 6  45666666665


Q ss_pred             HHHHHH
Q 041538          103 CLLGMV  108 (225)
Q Consensus       103 ~~i~~~  108 (225)
                      .+++..
T Consensus       409 ~~~~~~  414 (633)
T TIGR00805       409 STLSYL  414 (633)
T ss_pred             HHHHHH
Confidence            555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.00  E-value=9.7e-07  Score=82.48  Aligned_cols=156  Identities=15%  Similarity=0.266  Sum_probs=2.8

Q ss_pred             HHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 041538           40 MASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHA  119 (225)
Q Consensus        40 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~  119 (225)
                      ...++......+-+++.++++.++++++.+.+.++..+..++..+.++|. -|-|.+..+.++..+|.+++.+    |++
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l----Phf   90 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL----PHF   90 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc----cHh
Confidence            44555556666779999999999999999999999999999999999997 8889999999999899887775    334


Q ss_pred             CCCccccc-----------ccccc---------------cc--cc--chhHHHHHHHHHHHHHhCcccchhhhhhhhhcc
Q 041538          120 RPLACDYT-----------LRDSC---------------ES--AT--GSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQL  169 (225)
Q Consensus       120 ~~~~~~~~-----------~~~~~---------------~~--~~--~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~  169 (225)
                      ..+.|++.           ..+.|               ..  ..  ..-..+++++.++.|+|....++...+++=|..
T Consensus        91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv  170 (539)
T PF03137_consen   91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV  170 (539)
T ss_dssp             -------------------------------------------------------------SSS----------------
T ss_pred             hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence            44333211           01111               11  11  112456888888999999888888888888887


Q ss_pred             CCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          170 EKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       170 p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                      ++++         -....+..+....+|.++|-.+++...
T Consensus       171 ~~~~---------splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  171 SKKN---------SPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ----------------------------------------
T ss_pred             cccc---------CccchhhhhHHhhccHHHHHHHHHHHH
Confidence            7755         567778888888999988888887654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.96  E-value=2.6e-08  Score=89.79  Aligned_cols=158  Identities=13%  Similarity=0.139  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      .+..............+....+...++.+..+.++.  ........+...++.+++.++.||+ |||+.+..+..+.+++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            333334444444333333334444445556676666  2333444456667778888999997 9999999988887777


Q ss_pred             HHHHH-HhhhcCCCCCCccccccccccccccc-hhHHHHHHHHHHHHHhCc-ccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          107 MVLLW-LTTIFPHARPLACDYTLRDSCESATG-SQLMLLYLAFGLMSLGGG-GIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       107 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      ...+. .....+.                 .. ...........+..+..+ +..+....+.+|.||++.         |
T Consensus       330 ~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~---------R  383 (451)
T PF00083_consen  330 SLILGIIFFLGVS-----------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV---------R  383 (451)
T ss_pred             ccccccccccccc-----------------cccccccccceeeeeccccccccccccccccccccccccc---------c
Confidence            76664 1110000                 00 001111122222222222 234556688899999966         7


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccC
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLG  213 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g  213 (225)
                      +++.++.+....+++.+++.+.+.+.+..+
T Consensus       384 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~  413 (451)
T PF00083_consen  384 STGIGLSYAVGRIGGFIIPFLFPYLFNNLG  413 (451)
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            888999888889999999999988877766

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=7.5e-06  Score=73.06  Aligned_cols=168  Identities=14%  Similarity=0.031  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGM  107 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~  107 (225)
                      ++...+.....+...-..-+.++.+..+.+..+.-+.+.+.....+.+.+++.+.|.++||+ +..|.+....-+..+|.
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~  350 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV  350 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence            33333333333333334567777888888885555888888888999999999999999998 96665555444444443


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .....    |.     |             ++...+++-....+++.+...++.......+.+.+..   .+-..+++++
T Consensus       351 ~~~~i----P~-----~-------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~---s~~~vYGsVy  405 (464)
T KOG3764|consen  351 SSGPI----PF-----A-------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHV---SGFNVYGSVY  405 (464)
T ss_pred             Hhchh----Hh-----h-------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhc---cccceeeeHH
Confidence            22221    11     1             1233344444455555555555555555555554321   1112589999


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                      ++...+..+|..+||.++|.+.+..|+.|.-.+.
T Consensus       406 aIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii  439 (464)
T KOG3764|consen  406 AIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII  439 (464)
T ss_pred             HHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence            9999999999999999999999999987765443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.94  E-value=0.00024  Score=65.72  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=98.3

Q ss_pred             HHHHHHHhhHHHHHHHHhHhcCCchh----HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHH-------HHHHHHHHHH
Q 041538           37 FERMASTGFMPNMILYLCREYNMKIT----EGTNVLFFWSAASNFLPILGAFLADSYVGRYAM-------IGFGCITCLL  105 (225)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~-------~~~~~~~~~i  105 (225)
                      .....+......++.|+++..+.+..    ...+..++..+...+..++.|++.||+ |||+.       +.++.++..+
T Consensus       280 ~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~  358 (489)
T PRK10207        280 VFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSL  358 (489)
T ss_pred             HHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHH
Confidence            34444555557778888754333211    123344444556667788889999998 98873       6667677666


Q ss_pred             HHHHHHHhhh-cCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          106 GMVLLWLTTI-FPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       106 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +...+..... ...               .....+...+.....+.++|.+...+....++.+..|++.         ++
T Consensus       359 ~~~~~~~~~~~~~~---------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~---------~g  414 (489)
T PRK10207        359 GFLTAAAAGMWFAD---------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL---------MG  414 (489)
T ss_pred             HHHHHHHHHHhhcC---------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH---------HH
Confidence            6654432210 000               0011234556677888999999999999999999999855         78


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                      ..++.++...++|+.+|..+..+.
T Consensus       415 ~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        415 FILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999988899998888777544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.89  E-value=0.00022  Score=67.28  Aligned_cols=153  Identities=10%  Similarity=-0.064  Sum_probs=105.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchh---HHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH-HH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKIT---EGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG-FG   99 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-~~   99 (225)
                      ++|.+...+++.++....+|.+..+.|......++-|+.   +.++.......+..++..+.|.+.-++ +|-|..+ ++
T Consensus       308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~  386 (599)
T PF06609_consen  308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFG  386 (599)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHH
Confidence            346676667788888888898888999888888776664   567777788888888889999999886 8877654 55


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccc
Q 041538          100 CITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKS  179 (225)
Q Consensus       100 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~  179 (225)
                      .+++.++...|+...                      ..+....+...++.+++.|........ +.+..-+++.     
T Consensus       387 ~~~~ta~~Gama~~~----------------------~~n~~~~i~~~~l~g~giG~~~~~~~~-~~ql~~p~~~-----  438 (599)
T PF06609_consen  387 SVLMTAFCGAMAAVR----------------------PDNKNAAIAFLVLAGFGIGGILVPAIV-IAQLIVPDED-----  438 (599)
T ss_pred             HHHHHHHHHHHHHcc----------------------CCCcchHHHHHHHHHHhHHHHHHHHHH-eeEeeeCchH-----
Confidence            556666656555443                      112223445566677777765433333 3344333332     


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          180 EGALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       180 ~~~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                         .+..+++.-....+|+.+|..+..-+
T Consensus       439 ---ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  439 ---IGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             ---HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence               88999998889999998888876544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.82  E-value=0.00036  Score=64.62  Aligned_cols=88  Identities=13%  Similarity=0.161  Sum_probs=61.8

Q ss_pred             CCchHHHHHHHHHHHHH-HHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           24 GIRTLPFIIANEAFERM-ASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      .+|.+.+.+....+... ++..+..+.+..++ ..+.+.+. ........+...+++.++.++.||+ |||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~-~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK-SAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHH-hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            44555555555555444 55555666666655 44555433 5555666777788888889999998 999999999999


Q ss_pred             HHHHHHHHHHhh
Q 041538          103 CLLGMVLLWLTT  114 (225)
Q Consensus       103 ~~i~~~~l~~~~  114 (225)
                      ..++.+++....
T Consensus       369 m~~~~~~~~~~~  380 (513)
T KOG0254|consen  369 MSICLVILAVVG  380 (513)
T ss_pred             HHHHHHHHHHHH
Confidence            999988888754

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.81  E-value=0.00055  Score=63.39  Aligned_cols=145  Identities=15%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             HHHHHHHhhHHHHHHHHhH--hcCCchh------HHHHHHHHHHHHHHHHHHHH----HHHhHhhccchHHHHHHHHHHH
Q 041538           37 FERMASTGFMPNMILYLCR--EYNMKIT------EGTNVLFFWSAASNFLPILG----AFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~--~~~~~~~------~~~~~~~~~~~~~~i~~~~~----G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      .....++....-++.++..  ..+.+..      ...++.++..+...+..++.    +++.||+ +.++.+.++.++..
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~  361 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence            4444555555555555442  1122211      14555556666666666666    4555554 56677888888888


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      ++...+........              . ....+...+.....+.++|.....|...+++.+..|++.         |+
T Consensus       362 l~f~~l~~~~~~~~--------------~-~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~---------rg  417 (500)
T PRK09584        362 GAFLVLPLGAKFAN--------------D-AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL---------MG  417 (500)
T ss_pred             HHHHHHHHHHHhcC--------------C-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH---------HH
Confidence            88887776542111              0 011234468888899999999999999999999999855         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                      +.++.++....+|+.++..+..
T Consensus       418 ~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        418 FIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888777777777666654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.80  E-value=5.1e-05  Score=72.59  Aligned_cols=170  Identities=16%  Similarity=0.274  Sum_probs=121.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +.+..+.....+....+.+......+-+++.++++.++++++...+.++..+...+-.+.+-|. -|-|.+..+.++..+
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            4344444444444444447777778889999999999999999999999999999999999997 899999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCccccc-----------------------------cccccc---cccchhHHHHHHHHHHHHHh
Q 041538          106 GMVLLWLTTIFPHARPLACDYT-----------------------------LRDSCE---SATGSQLMLLYLAFGLMSLG  153 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~-----------------------------~~~~~~---~~~~~~~~~~~~~~~l~g~g  153 (225)
                      +.+++++-    ++....|+|.                             ..+.+.   .++...+.+++++.++.|+|
T Consensus       175 gsll~alP----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG  250 (735)
T KOG3626|consen  175 GSLLFALP----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG  250 (735)
T ss_pred             HHHHHhCh----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence            98887753    2333333111                             001111   11112345788888899999


Q ss_pred             CcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          154 GGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       154 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                      ....++...+++=|...+.+         -.-..++.++...+|.++|-++++++.
T Consensus       251 ~Tpi~tlGisYiDDnvk~~~---------SplYlgi~~~~~~lGPaiGfllgS~~l  297 (735)
T KOG3626|consen  251 ATPIFTLGISYIDDNVKKKN---------SPLYLGILYSMAILGPAIGFLLGSFCL  297 (735)
T ss_pred             CCCCccCCCccccccccccC---------CcHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            88887777777755544433         567788888889999999988888764

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.74  E-value=0.00063  Score=61.76  Aligned_cols=131  Identities=9%  Similarity=0.047  Sum_probs=91.1

Q ss_pred             HHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 041538           51 LYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRD  130 (225)
Q Consensus        51 ~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~  130 (225)
                      .|.++-++ +...+.|...++........+.+-|+.||+ |-|.+.+++..+-.+|..+=..+. .|.+           
T Consensus        69 n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v-----------  134 (480)
T KOG2563|consen   69 NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFV-----------  134 (480)
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccc-----------
Confidence            56666677 777888999999999999999999999998 999999999999988887666654 2211           


Q ss_pred             ccccccchhH--HHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          131 SCESATGSQL--MLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       131 ~~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                            ++..  .+...+..+.+..+......-.-+..-+||+++         |+++...-.++..+|.++|-++.+.+
T Consensus       135 ------~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q---------ra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  135 ------PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ---------RAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             ------cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch---------hhhhhhHHHhcchHHHHHHhhcccee
Confidence                  1122  245556666666555444333445556799866         67777766666666666665555555


Q ss_pred             ec
Q 041538          209 QD  210 (225)
Q Consensus       209 ~~  210 (225)
                      ..
T Consensus       200 V~  201 (480)
T KOG2563|consen  200 VP  201 (480)
T ss_pred             cC
Confidence            43

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.65  E-value=0.00055  Score=62.94  Aligned_cols=116  Identities=22%  Similarity=0.181  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHH
Q 041538           71 WSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLM  150 (225)
Q Consensus        71 ~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  150 (225)
                      ......+.++..|.++||+ |||..+......+.+..+.+.+..                         .+ +++ ..-.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~~-------------------------~~-~~~-~~~l  122 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQG-------------------------YW-FFL-LLGL  122 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHHH-------------------------HH-Hhh-hccc
Confidence            3567788899999999998 999999998888877776666532                         11 221 1111


Q ss_pred             HHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          151 SLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       151 g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      .-+.+.......++++|....++         |....++.+.....+..++|.+.+.+.+..|....|.++++
T Consensus       123 ~g~~~~~~s~~~a~vadis~~~~---------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~  186 (463)
T KOG2816|consen  123 SGGFSAIFSVGFAYVADISSEEE---------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAA  186 (463)
T ss_pred             ccchhhhhhhhhhheeeccchhH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHH
Confidence            11233455667778888777654         89989998888889999999999999888888777776654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.64  E-value=1.7e-06  Score=74.35  Aligned_cols=136  Identities=15%  Similarity=0.183  Sum_probs=103.8

Q ss_pred             HHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 041538           46 MPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD  125 (225)
Q Consensus        46 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  125 (225)
                      -.-+..+...+.+...++.+.+.++++.=+.+.++++|++.||.+|-|..-.+-+.+..+|-++++.-.           
T Consensus        63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-----------  131 (459)
T KOG4686|consen   63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-----------  131 (459)
T ss_pred             chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-----------
Confidence            344455666667777778888899999999999999999999998877665555566667777666533           


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhh
Q 041538          126 YTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI  205 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~  205 (225)
                                .....+++..+++++|+|.-......+.+...+|.-.+         ..-+++++-....+|+.+--.++
T Consensus       132 ----------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE---------Ln~vfGlqlSvAR~GstvNf~lm  192 (459)
T KOG4686|consen  132 ----------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE---------LNFVFGLQLSVARLGSTVNFLLM  192 (459)
T ss_pred             ----------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc---------ccchhhHHHHHHHhhceeeeeec
Confidence                      12356789999999999977677778888888887644         78889998888888887766677


Q ss_pred             hheecc
Q 041538          206 VYIQDN  211 (225)
Q Consensus       206 ~~l~~~  211 (225)
                      +++.++
T Consensus       193 ~~ly~~  198 (459)
T KOG4686|consen  193 PFLYDT  198 (459)
T ss_pred             HHHHHH
Confidence            777654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.63  E-value=7.6e-05  Score=67.69  Aligned_cols=167  Identities=12%  Similarity=0.067  Sum_probs=109.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhh---ccchHHHHHHHH-
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSY---VGRYAMIGFGCI-  101 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~~~~~~~-  101 (225)
                      +.++....+.+...+.+-.=.+++++|++ .+|.+..-++.+-...-+...+.+++-|..+||-   +||||.++.... 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            45555555666666665555778889988 5688888777776777777888899999999986   699998776655 


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchh
Q 041538          102 TCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEG  181 (225)
Q Consensus       102 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~  181 (225)
                      ...++..++.++..+....   |++.-.+    ...-...+++++..+.=+.....+...-++++|+..+.++       
T Consensus       111 ~i~~~l~Lig~aaDig~~l---gd~~~~~----~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-------  176 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLL---GDNERKP----VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-------  176 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHh---cCCcccc----cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-------
Confidence            5555665555544222211   1111000    0011334556666666666667778888999999887664       


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          182 ALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       182 ~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                       ..++.+++.+...+|+.+|..+.++.
T Consensus       177 -~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  177 -KTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             -hhccchhHHHHHHhcceeeeeccccc
Confidence             22277777888888888877666643

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.53  E-value=0.0026  Score=58.74  Aligned_cols=119  Identities=14%  Similarity=0.072  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH-HHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHH
Q 041538           65 TNVLFFWSAASNFLPILGAFLADSYVGRYAMIG-FGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLL  143 (225)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (225)
                      +...++..+...+..|+.|-++|+- |+||.++ +...++++....+.+..                      ++.....
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~----------------------~~~~~~~  129 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS----------------------PGQWWLA  129 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC----------------------cchHHHH
Confidence            4567788888888999999999997 7777554 44456666666666643                      2233334


Q ss_pred             HHHHHHHHHhCcccchhhhhhhhhccCCCCCCCcc-----------------chhhHHHHHHHHHHHHhhhhhhHHHhhh
Q 041538          144 YLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSK-----------------SEGALKSYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       144 ~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~-----------------~~~~r~~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                      .+..++..++.+......++++.|+.+++++.++.                 ....|++.++.-+..+++|+.+.-.+.-
T Consensus       130 ~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l  209 (477)
T PF11700_consen  130 LVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISL  209 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            44444455666667788899999998876641100                 0111267777777777888876655543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.39  E-value=0.0081  Score=47.24  Aligned_cols=112  Identities=10%  Similarity=0.130  Sum_probs=76.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchh
Q 041538           60 KITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQ  139 (225)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (225)
                      ++.....-..+......+..++.+.+-+++ |.|+.+.++.+.+.+-.......                         +
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~~-------------------------~   88 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFYP-------------------------N   88 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhh-------------------------h
Confidence            333444445555566677778888899997 99999999988776443322211                         3


Q ss_pred             HHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhh
Q 041538          140 LMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       140 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                      ...++.+-.+.|++.+..+.....++.+.-++++         +++.++++-...+.+..+|.++.-
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~---------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEET---------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH---------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4568888899999999999999999988666544         556566655555555555544443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.38  E-value=0.0042  Score=57.38  Aligned_cols=190  Identities=12%  Similarity=0.020  Sum_probs=117.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhH-hcCCchhH----------HHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCR-EYNMKITE----------GTNVLFFWSAASNFLPILGAFLADSYV   90 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~----------~~~~~~~~~~~~~i~~~~~G~laDr~~   90 (225)
                      ++-.|.++.+.+..++..++++.+..+...|..+ .+|-++.+          ..+.....++...+.+++--++.+|+ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3455777888889999999888888888888764 45543321          23344555555566677788899997 


Q ss_pred             cc-hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhcc
Q 041538           91 GR-YAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQL  169 (225)
Q Consensus        91 Gr-r~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~  169 (225)
                      |+ |+...++.++..+++....+......  +.+.. .........+.+......+...+.|+..+.....-++++++..
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~  409 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAK--NSRYY-DGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS  409 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhh--ccccc-cccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence            95 56667777777777777765442110  00000 0000000011122355666777788888888888889999988


Q ss_pred             CCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccC--cchhhhhhh
Q 041538          170 EKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG--WKVGFGIPA  222 (225)
Q Consensus       170 p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g--~~~~f~~~~  222 (225)
                      |++++       ..+...+..|.+..+.-++..+..|.+.+.+|  -.+.+.+++
T Consensus       410 ~~~~~-------~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~g  457 (477)
T TIGR01301       410 SNLGA-------GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGA  457 (477)
T ss_pred             cccCC-------CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHH
Confidence            86442       15788888888888777777766666444333  334444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.38  E-value=0.002  Score=57.89  Aligned_cols=140  Identities=17%  Similarity=0.085  Sum_probs=95.9

Q ss_pred             HhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc-----chHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 041538           53 LCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVG-----RYAM-IGFGCITCLLGMVLLWLTTIFPHARPLACDY  126 (225)
Q Consensus        53 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-----rr~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  126 (225)
                      +..|++++..-.+..+.+-..... ..+..|+.||+. +     ||.. +..+.+.+..+..++.+..-...        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--------   75 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--------   75 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            445788887777777766665555 488899999997 5     5544 45555566666666655431111        


Q ss_pred             ccccccccccc--hhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          127 TLRDSCESATG--SQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       127 ~~~~~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                        +....+...  .......++..+.|+|.+....+..++.+|..|+++         |.+..++.+...-+|.+++..+
T Consensus        76 --~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~---------R~~~v~ivw~Mli~G~iv~ai~  144 (403)
T PF03209_consen   76 --ESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER---------RPRVVAIVWVMLIVGIIVSAIV  144 (403)
T ss_pred             --ccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh---------hhhhHHHHHHHHHHHHHHHHHH
Confidence              000000011  123345566677888888888999999999999866         8999999999999999999999


Q ss_pred             hhheecccC
Q 041538          205 IVYIQDNLG  213 (225)
Q Consensus       205 ~~~l~~~~g  213 (225)
                      .+.+.+.+.
T Consensus       145 ~g~lL~~~s  153 (403)
T PF03209_consen  145 FGRLLDPFS  153 (403)
T ss_pred             HHHHccccC
Confidence            997766543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.35  E-value=0.0011  Score=59.85  Aligned_cols=128  Identities=17%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             hhHHHHHHHHhHhcCC---chhHH----HHHHHHHHHHHHHHHHHHHHHhHhhccchHH-HHHHHHHHHHHHHHHHHhhh
Q 041538           44 GFMPNMILYLCREYNM---KITEG----TNVLFFWSAASNFLPILGAFLADSYVGRYAM-IGFGCITCLLGMVLLWLTTI  115 (225)
Q Consensus        44 ~~~~~l~~yl~~~~~~---~~~~~----~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~-~~~~~~~~~i~~~~l~~~~~  115 (225)
                      .+.++.|.|++++.+-   ++.+.    +...++......+..|+-|-++|+. |+||- +.+..++.++..+.+++.. 
T Consensus        33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~-  110 (438)
T COG2270          33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP-  110 (438)
T ss_pred             eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC-
Confidence            3466778999887654   44433    4456777777888899999999998 86664 5555567777777777655 


Q ss_pred             cCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHh
Q 041538          116 FPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVS  195 (225)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~  195 (225)
                                          +++.+....+..++..++........++++.|..++++         .++.++..+-...
T Consensus       111 --------------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~---------~~riS~lg~~~gy  161 (438)
T COG2270         111 --------------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN---------MGRISGLGWALGY  161 (438)
T ss_pred             --------------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc---------cCccccccccccc
Confidence                                12355666666777888888888899999999988865         3344444445556


Q ss_pred             hhhhhHH
Q 041538          196 ASSMVAV  202 (225)
Q Consensus       196 ig~~~g~  202 (225)
                      +|+.+.-
T Consensus       162 lgs~i~l  168 (438)
T COG2270         162 LGSVILL  168 (438)
T ss_pred             ccchHHH
Confidence            6665433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.0021  Score=57.51  Aligned_cols=150  Identities=12%  Similarity=0.052  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHH-hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH-HHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYL-CREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI-TCLLG  106 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~-~~~i~  106 (225)
                      +..+....+.....|....+...++ ++.+++++.+.+.+....+....+.+..-....||..|.-+....-.+ ++.-.
T Consensus       263 ~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~  342 (451)
T KOG2615|consen  263 LRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPA  342 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHH
Confidence            3344444443333334444444445 677999999999999988888888888888888887444444333333 33222


Q ss_pred             HHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHH
Q 041538          107 MVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSY  186 (225)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~  186 (225)
                      ..++....                        ...+++.+..+..+..+...++...++....|++.         |+..
T Consensus       343 ~llls~~~------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q---------rG~~  389 (451)
T KOG2615|consen  343 FLLLSLAR------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ---------RGTL  389 (451)
T ss_pred             HHHHhccc------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc---------chHH
Confidence            22222221                        23558888888888888888999999999888866         8999


Q ss_pred             HHHHHHHHhhhhhhHHHhhhheecc
Q 041538          187 FSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       187 ~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      .+.....+.++=++||.+.|.+..+
T Consensus       390 ~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  390 NGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHHHHHHHHhhhhhhheeEEE
Confidence            9999999999999999999877653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.24  E-value=0.0036  Score=44.13  Aligned_cols=67  Identities=10%  Similarity=0.050  Sum_probs=58.1

Q ss_pred             HHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 041538           46 MPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTT  114 (225)
Q Consensus        46 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~  114 (225)
                      .+.+ +.++++.++|.++.+++.+...+++.++.+...++.++. .+++.+..+.+..++....+.+..
T Consensus        12 TplL-P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   12 TPLL-PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444 457778899999999999999999999999999999996 888899999888888888888765

Note that many members are hypothetical proteins.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.00027  Score=64.39  Aligned_cols=169  Identities=15%  Similarity=0.080  Sum_probs=105.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHH--------HHHHHHHHHHH-HHHHHHHHhHhhccchHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTN--------VLFFWSAASNF-LPILGAFLADSYVGRYAMI   96 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~--------~~~~~~~~~~i-~~~~~G~laDr~~Grr~~~   96 (225)
                      +.+.......|....++|+...+....++ +.++.+++...        ...+......+ +..+..++.|++ ||++.-
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            44445556777777788887776666555 44544443322        12222223333 556677889997 999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCC
Q 041538           97 GFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIK  176 (225)
Q Consensus        97 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~  176 (225)
                      +.+..++.+..+.+...-+  +             .. .+.+ ...++..  .+-+++-+.......+-+|.||++.   
T Consensus       382 ~~GF~~~~i~~~~~~~~y~--~-------------~~-~~~G-f~v~y~l--~~ff~NFGPn~ttfivpaE~FParv---  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYN--Q-------------LE-NTIG-FVVLYSL--TFFFGNFGPNATTFIVPAEIFPARV---  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCcc--c-------------cc-ccCc-eeehHHH--HHHHHhcCCCceeEEeehhhchHHH---
Confidence            8888777766655554221  0             00 1111 1112222  1222333334445566689999944   


Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhhHHHhhhheec-----ccCcchhhhhhhcc
Q 041538          177 SKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQD-----NLGWKVGFGIPAAI  224 (225)
Q Consensus       177 ~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~-----~~g~~~~f~~~~~~  224 (225)
                            |++.-++...++-+|+++|.....++.+     ..|.+..|++.+..
T Consensus       440 ------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~  486 (538)
T KOG0252|consen  440 ------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGC  486 (538)
T ss_pred             ------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHH
Confidence                  8999999999999999999999999998     67888888776543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.06  E-value=0.00014  Score=68.14  Aligned_cols=175  Identities=12%  Similarity=0.159  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhHhh-ccchHHHHHHHHHHHHH
Q 041538           29 PFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSA-ASNFLPILGAFLADSY-VGRYAMIGFGCITCLLG  106 (225)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~-~Grr~~~~~~~~~~~i~  106 (225)
                      .+..+....+.....++.+++|.|++.+++.+++++..+.....+ +..++.+++|++..|+ ++.|+++.+..+..++.
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~  387 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS  387 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence            344557777888888999999999999999999999888765555 6778999999999998 55666665555544444


Q ss_pred             HHH---HHHh--hhcC-CCCCCcc----------------ccc--------cccccccccchhHHHHHHHHHHHHHhCcc
Q 041538          107 MVL---LWLT--TIFP-HARPLAC----------------DYT--------LRDSCESATGSQLMLLYLAFGLMSLGGGG  156 (225)
Q Consensus       107 ~~~---l~~~--~~~~-~~~~~~~----------------~~~--------~~~~~~~~~~~~~~~~~~~~~l~g~g~g~  156 (225)
                      .+.   +.+.  .+.+ ..++..|                +..        .+-.|...=......+.+...+..+..+.
T Consensus       388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~  467 (539)
T PF03137_consen  388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM  467 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence            332   1111  0001 0111111                110        01123222011233344444444444444


Q ss_pred             cchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHH-HhhhhhhHHHhhhheeccc
Q 041538          157 IRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVS-VSASSMVAVTFIVYIQDNL  212 (225)
Q Consensus       157 ~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~-~~ig~~~g~~l~~~l~~~~  212 (225)
                      .........-+..|+++         |+-+.++.... .-+|.+=||++.|.+.|..
T Consensus       468 ~~~p~~~i~LR~V~~~~---------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  468 SQVPSTLITLRCVPPEQ---------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccchheeeeccCChhh---------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            44445556668888876         67777776654 4677788999999998864

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.95  E-value=0.0036  Score=58.16  Aligned_cols=153  Identities=8%  Similarity=-0.019  Sum_probs=108.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 041538           35 EAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTT  114 (225)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~  114 (225)
                      .++..++...+.+++ .+-.++.+-.+.-.+.+....-.+-...-++.+++..|+ |+-+++.++.....+=........
T Consensus       380 av~mG~g~~lv~tFL-fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  380 AVVMGAGVGLVFTFL-FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc
Confidence            333333433444444 333445665666666566666666677788889999998 999999988776665555555444


Q ss_pred             hcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHH-H
Q 041538          115 IFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYV-S  193 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~-~  193 (225)
                                              ++++..-.-++.++-.+.++.++.+++++..||+-         |+++.++... .
T Consensus       458 ------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l---------~at~Q~l~~g~f  504 (618)
T KOG3762|consen  458 ------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL---------RATAQGLLQGIF  504 (618)
T ss_pred             ------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc---------hHHHHHHHHHHh
Confidence                                    45556667788999999999999999999999966         6777777655 4


Q ss_pred             HhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          194 VSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       194 ~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      -.+|-.+|.+++|.+.+.+|-+..|.+.+
T Consensus       505 ~GlG~g~GslIGG~~v~~fg~~ttf~~~g  533 (618)
T KOG3762|consen  505 HGLGKGLGSLIGGFVVERFGARTTFRIFG  533 (618)
T ss_pred             cccCcchhhhhhhhhheeehhHHHHHHHH
Confidence            58888889999998888887666555443

>PTZ00207 hypothetical protein; Provisional

Probab=96.84  E-value=0.0088  Score=56.70  Aligned_cols=146  Identities=11%  Similarity=0.068  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhc-CCchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhccchH---------
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREY-NMKITE--GTNVLFFWSAASNFLPILGAFLADSYVGRYA---------   94 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~~~~~--~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~---------   94 (225)
                      .+|+++...++....-..+..|+-...+ .+ |.+.++  ....+++.++++.++.+.+|++.... -||+         
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~-sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt~  431 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNARFIYT-ALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPITI  431 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHHHHHH-HhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-HhhccccccchhH
Confidence            3455556666655555555666654444 45 663333  23378999999999999999998332 2222         


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCC
Q 041538           95 MIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDG  174 (225)
Q Consensus        95 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~  174 (225)
                      .+.+..+ +.++++++++..  |                      ...++++.++.|++.|..++......+|+|. ++ 
T Consensus       432 ~l~~~~~-~~~~~lll~~~~--p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~-  484 (591)
T PTZ00207        432 ALFIPSV-CIITMLTLFLTL--P----------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD-  484 (591)
T ss_pred             HHHHHHH-HHHHHHHHHHHC--C----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-
Confidence            2333333 666777666643  1                      1359999999999999999999999999999 55 


Q ss_pred             CCccchhhHHHHHHHHHHHHhhhhhhH-HHhhhhee
Q 041538          175 IKSKSEGALKSYFSWYYVSVSASSMVA-VTFIVYIQ  209 (225)
Q Consensus       175 ~~~~~~~~r~~~~~~~~~~~~ig~~~g-~~l~~~l~  209 (225)
                              .+.-+.......-+|+.+= ..+.|.+.
T Consensus       485 --------~g~~yN~~~~a~pigs~~~n~~l~G~~Y  512 (591)
T PTZ00207        485 --------PAKHYNFCFLGSVLSAIFLNRLLYGEWY  512 (591)
T ss_pred             --------hHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence                    4555555555555555442 34455443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.84  E-value=0.033  Score=51.78  Aligned_cols=143  Identities=13%  Similarity=0.019  Sum_probs=91.3

Q ss_pred             HHHHhhHHHHHHHHhHhc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccch-H------HHHHHHHHHHHHH
Q 041538           40 MASTGFMPNMILYLCREY-----NMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRY-A------MIGFGCITCLLGM  107 (225)
Q Consensus        40 ~~~~~~~~~l~~yl~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr-~------~~~~~~~~~~i~~  107 (225)
                      ..|.-..+.+..|..++.     |++- ...+..++......+..|+.+++=.|. +|| |      =+.++.++..++.
T Consensus       282 ~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f  359 (493)
T PRK15462        282 AFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGF  359 (493)
T ss_pred             HHHHHhhHHHHHHHHHhccchhcceee-CHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHH
Confidence            344444555556666542     2221 244555666666777777777776664 432 2      1666777777777


Q ss_pred             HHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHH
Q 041538          108 VLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~  187 (225)
                      .++.+......          +     ....++..++....++++|.-...|...+++++..|++.         ++..+
T Consensus       360 ~~l~~~~~~~~----------~-----~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~---------~g~~m  415 (493)
T PRK15462        360 CILTLSARWSA----------M-----YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV---------TGVLT  415 (493)
T ss_pred             HHHHHHHhhcC----------C-----CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH---------HHHHH
Confidence            77766442111          0     011345567788888999999999999999999999844         89988


Q ss_pred             HHHHHH-HhhhhhhHHHhhhhe
Q 041538          188 SWYYVS-VSASSMVAVTFIVYI  208 (225)
Q Consensus       188 ~~~~~~-~~ig~~~g~~l~~~l  208 (225)
                      +.+... ..+|..++..+.++.
T Consensus       416 g~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        416 GIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            888663 357766666665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.68  E-value=0.015  Score=53.55  Aligned_cols=127  Identities=18%  Similarity=0.211  Sum_probs=98.8

Q ss_pred             HHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHH-HHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 041538           48 NMILYLCREYNMKITEGTNVLFFWSAASNFLPILGA-FLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDY  126 (225)
Q Consensus        48 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  126 (225)
                      .++.|+...+++++.+.+...........+.+++.. .+.-. +|-|+.+..+...-.+......+...           
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~~-----------  330 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFATE-----------  330 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhcc-----------
Confidence            446778889999999999999999999999999988 55555 59999888888888888888787662           


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhh
Q 041538          127 TLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                                   .++++....+.++ .....+...++.+.+.++++         ++.++++.+....+.+.++|.+-+
T Consensus       331 -------------~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e---------~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  331 -------------TWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE---------QGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             -------------chhhhHHHHHHHh-hcchhHHHHhHHHhhccccc---------ccchhhHHHHHHHHhhhhhHHHHH
Confidence                         2334444444443 34457888899999888866         788899998888999989888877


Q ss_pred             hee
Q 041538          207 YIQ  209 (225)
Q Consensus       207 ~l~  209 (225)
                      .+.
T Consensus       388 ~i~  390 (463)
T KOG2816|consen  388 NIF  390 (463)
T ss_pred             HHH
Confidence            653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.48  E-value=0.08  Score=48.90  Aligned_cols=106  Identities=11%  Similarity=0.034  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHh
Q 041538           74 ASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLG  153 (225)
Q Consensus        74 ~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  153 (225)
                      .....-...+..-||+ |||.....+..+..++.+...+...                     .....+......+...+
T Consensus       362 ~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~  419 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPD---------------------DLGGWLHWILPLLGKFF  419 (521)
T ss_pred             HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhc---------------------cchhHHHHHHHHHHHHH
Confidence            4444455568999998 9999999998888888877777551                     11101122222222222


Q ss_pred             CcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheec
Q 041538          154 GGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQD  210 (225)
Q Consensus       154 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~  210 (225)
                      .+........+.+|++|+..         |..+.+.......++++++|.+......
T Consensus       420 ~~~~~~~~~~~~~el~pt~~---------r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  420 IGSAFNLIFLYSAELIPTVV---------RNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHhhccHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334445788899999955         8999999999999999999988865543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.025  Score=51.72  Aligned_cols=133  Identities=11%  Similarity=0.001  Sum_probs=76.6

Q ss_pred             hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhc------cchHHHHHHHHHHHHHHHHHH-HhhhcCCCCCCcccc
Q 041538           54 CREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYV------GRYAMIGFGCITCLLGMVLLW-LTTIFPHARPLACDY  126 (225)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~------Grr~~~~~~~~~~~i~~~~l~-~~~~~~~~~~~~~~~  126 (225)
                      .+-.|++..+..+...+...+..++.++||.++||+.      +|.++=.+.+.+.+.....+. +..   .        
T Consensus       275 ~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~---~--------  343 (493)
T KOG1330|consen  275 YELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP---A--------  343 (493)
T ss_pred             HHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH---h--------
Confidence            3445677777788888888999999999999999941      233332222222222221111 111   0        


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHhCc-ccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHH-hhhhhhHHHh
Q 041538          127 TLRDSCESATGSQLMLLYLAFGLMSLGGG-GIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSV-SASSMVAVTF  204 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~-~ig~~~g~~l  204 (225)
                               .+.....+.+.+++++.-.. ..++....+..+..|++.         |.+++++.+... ..|..-+|.+
T Consensus       344 ---------~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~---------Rt~a~a~~~~~~h~fgd~~~p~i  405 (493)
T KOG1330|consen  344 ---------FTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSR---------RTTAYALDTVFEHIFGDAASPYI  405 (493)
T ss_pred             ---------hhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCccc---------ccHHHHHHHHHHHHhccCCCcce
Confidence                     01122223333333332221 123445556778888865         888888876654 6666667779


Q ss_pred             hhheeccc-Ccc
Q 041538          205 IVYIQDNL-GWK  215 (225)
Q Consensus       205 ~~~l~~~~-g~~  215 (225)
                      .|.+.|+. ||+
T Consensus       406 vGilsd~l~g~~  417 (493)
T KOG1330|consen  406 VGILSDKLRGYK  417 (493)
T ss_pred             ehhHHHHhhCCC
Confidence            99998875 665

>PRK03612 spermidine synthase; Provisional

Probab=96.41  E-value=0.19  Score=47.08  Aligned_cols=140  Identities=15%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH---HHHHHHhhhcCCCC
Q 041538           44 GFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLG---MVLLWLTTIFPHAR  120 (225)
Q Consensus        44 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~---~~~l~~~~~~~~~~  120 (225)
                      .....+...+...+|-+..+.+.+++++..+..++..++++++++. -|+. ...-..+..++   ..++.......   
T Consensus        32 ~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~-~~~e~~i~l~~~~~~~ll~~~~~~~---  106 (521)
T PRK03612         32 VYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGF-VAVELLLALLGGLSALILYAAFAFQ---  106 (521)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3344445566667888888889999999999999888888877554 2222 11111111111   11111111000   


Q ss_pred             CCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhh
Q 041538          121 PLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMV  200 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  200 (225)
                                      ......++...++.++..|+..|....+..+.... +         -++..+-.|....+|+++
T Consensus       107 ----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~-~---------~g~~~g~ly~~ntlGa~~  160 (521)
T PRK03612        107 ----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ-H---------LGHNVATVLAADYLGALV  160 (521)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c---------hhhhhhhhHhHHhHHHHH
Confidence                            00112223333445555555554443333322110 1         234456678888999999


Q ss_pred             HHHhhhheec-ccCc
Q 041538          201 AVTFIVYIQD-NLGW  214 (225)
Q Consensus       201 g~~l~~~l~~-~~g~  214 (225)
                      |.++.+++.- ..|-
T Consensus       161 G~l~~~~vLlp~lG~  175 (521)
T PRK03612        161 GGLAFPFLLLPRLGL  175 (521)
T ss_pred             HHHHHHHHHHHhcch
Confidence            9999886543 4554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.37  E-value=0.047  Score=49.50  Aligned_cols=129  Identities=12%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             hHHHHHHHHhHh-cCCchhHHH-HHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 041538           45 FMPNMILYLCRE-YNMKITEGT-NVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPL  122 (225)
Q Consensus        45 ~~~~l~~yl~~~-~~~~~~~~~-~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~  122 (225)
                      .-+++..|+.+. .|++..|.. -+.-.+.-......++...+.|.+ |.|+++++..+..++...++.+..        
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~--------   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT--------   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence            367777999887 899999875 466777777788888899999997 999999998888877777777655        


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHH
Q 041538          123 ACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAV  202 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~  202 (225)
                                      ++..+-+.-+..|+..+.. .+..+++=...|+++         ..++.+....+.-+|-.++.
T Consensus        93 ----------------sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~---------yq~vts~~raa~l~g~~~s~  146 (412)
T PF01770_consen   93 ----------------SVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH---------YQKVTSYTRAATLVGRFISS  146 (412)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence                            3444555566666665543 344555544455422         55556555555555544444


Q ss_pred             Hhhhhe
Q 041538          203 TFIVYI  208 (225)
Q Consensus       203 ~l~~~l  208 (225)
                      .++-.+
T Consensus       147 ~lgQll  152 (412)
T PF01770_consen  147 LLGQLL  152 (412)
T ss_pred             HHHHHH
Confidence            444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.13  E-value=0.17  Score=46.81  Aligned_cols=165  Identities=9%  Similarity=-0.005  Sum_probs=95.6

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCch-----hHHHHHHHHHHHHHHHH-HHHHHHHhHhhccchHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKI-----TEGTNVLFFWSAASNFL-PILGAFLADSYVGRYAMIGF   98 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~-----~~~~~~~~~~~~~~~i~-~~~~G~laDr~~Grr~~~~~   98 (225)
                      +|.++...+..++..+.|+...+     +.+.+..+.     ....++.+....-..+. .++-+++++|+ +|+|.+..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            45566666777777777776655     666666632     23344444343333333 78889999997 99999888


Q ss_pred             HHHHHHHHHHHHHHhhh-cCCCCCCccccccccccccccch----------h--HHHHHHHHHHHHHhCcccchhhhhhh
Q 041538           99 GCITCLLGMVLLWLTTI-FPHARPLACDYTLRDSCESATGS----------Q--LMLLYLAFGLMSLGGGGIRSSSLAFG  165 (225)
Q Consensus        99 ~~~~~~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~l~g~g~g~~~~~~~~~~  165 (225)
                      ....+.....++.+... .+...||+-   ..+......+.          +  ...+++..-+.+..  ...-..+++.
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~---~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~--vvS~lFW~fa  154 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPTA---LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSV--VLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCcH---HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            77776666655555421 111111100   00000000000          0  01222222222211  1112567888


Q ss_pred             hhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          166 ADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       166 ~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                      .|.+..++         -.+.+.+....+|+|..+++.+..++.
T Consensus       155 ndi~t~~q---------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDE---------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988755         688899999999999999999988875

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.05  E-value=0.0073  Score=56.18  Aligned_cols=69  Identities=14%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             HHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHH
Q 041538           36 AFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLG  106 (225)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~  106 (225)
                      ++....+..+.+.++.|.. .+|+++++.+.+...--+..+++.++.|++|||+ -+||.++++..+....
T Consensus        21 ~~~~~~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~   89 (618)
T KOG3762|consen   21 LFFGARFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVT   89 (618)
T ss_pred             eeeeecccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHH
Confidence            3333444566778888877 6899999999999999999999999999999998 6666666666544433

>TIGR01272 gluP glucose/galactose transporter

Probab=95.99  E-value=0.0099  Score=51.60  Aligned_cols=63  Identities=11%  Similarity=-0.066  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhee
Q 041538          138 SQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQ  209 (225)
Q Consensus       138 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~  209 (225)
                      .+...+.++.++.+.|.+...+..++++++..|+++         +++..++.+....+|..++|.+.+.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~---------~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET---------AASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch---------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            356778999999999999999999999999988755         677788889999999999999999765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.85  E-value=0.032  Score=50.93  Aligned_cols=152  Identities=13%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchH-HHHHHHHHHHHHHH
Q 041538           30 FIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYA-MIGFGCITCLLGMV  108 (225)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-~~~~~~~~~~i~~~  108 (225)
                      +..+...+....+++..+.+-.-+. .-|++...++.......+.++++..++|.++||. ...| +..+......++. 
T Consensus       270 il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~-  346 (480)
T KOG2563|consen  270 ILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGT-  346 (480)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHH-
Confidence            3333333344444444443322222 3467778899999999999999999999999998 5444 3443333333332 


Q ss_pred             HHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhc-cCCCCCCCccchhhHHHHH
Q 041538          109 LLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQ-LEKGDGIKSKSEGALKSYF  187 (225)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~-~p~~~~~~~~~~~~r~~~~  187 (225)
                      ++.......                   ......++....++|.+..+..|...-+..|. ||..+          ++.+
T Consensus       347 ~~l~~~t~~-------------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E----------~tSs  397 (480)
T KOG2563|consen  347 LMLLTCTLF-------------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE----------GTSS  397 (480)
T ss_pred             HHHHHhhcc-------------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC----------cccc
Confidence            222221111                   11123355555666666666777777777776 56544          3335


Q ss_pred             HHHHHHHhhhhhhHHHhhhheecccC
Q 041538          188 SWYYVSVSASSMVAVTFIVYIQDNLG  213 (225)
Q Consensus       188 ~~~~~~~~ig~~~g~~l~~~l~~~~g  213 (225)
                      +..+.++++.+.+-.++.+...+..+
T Consensus       398 Gll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  398 GLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             eeEEeehhHHHHHHHHHHHHHhhccC
Confidence            66666777777777777777666554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.65  E-value=0.023  Score=54.80  Aligned_cols=79  Identities=14%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHH-HHHHHHHHHHHHHHHHhHhh-ccchHHHHHHHHHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLF-FWSAASNFLPILGAFLADSY-VGRYAMIGFGCITCLL  105 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~laDr~-~Grr~~~~~~~~~~~i  105 (225)
                      ....++...++...+.+..+++|.|++++++.+.+.+..+.. +..-+..++.+++|++..|+ +..|.+..+..+...+
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            345567888899999999999999999999999999988874 44445677899999999998 5566665555544433


Q ss_pred             H
Q 041538          106 G  106 (225)
Q Consensus       106 ~  106 (225)
                      .
T Consensus       474 ~  474 (735)
T KOG3626|consen  474 S  474 (735)
T ss_pred             H
Confidence            3

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.59  E-value=1.3  Score=40.60  Aligned_cols=137  Identities=9%  Similarity=-0.037  Sum_probs=92.0

Q ss_pred             hHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 041538           45 FMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLAC  124 (225)
Q Consensus        45 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~  124 (225)
                      +-..+..|+..+ |+++...+..=....+....++.+..++-+|+ |..|.=.++...-..+..+.....-.+.      
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~------  348 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG------  348 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC------
Confidence            344556888877 99999999999999999999999999999998 9999877776643322222221110110      


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          125 DYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                          + +   ....+...+..+..+-=+|.=+..-+..-++-|..|+++         |+..++..+...++...+...+
T Consensus       349 ----~-~---~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~---------Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  349 ----S-P---FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE---------RGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             ----C-C---chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH---------hhHHHHHHHHHHHHHHHHHHHH
Confidence                0 0   001133444445555446666667777777777777655         8999999888888888766544


Q ss_pred             hh
Q 041538          205 IV  206 (225)
Q Consensus       205 ~~  206 (225)
                      +-
T Consensus       412 ~i  413 (432)
T PF06963_consen  412 TI  413 (432)
T ss_pred             Hh
Confidence            43

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.44  E-value=0.016  Score=53.57  Aligned_cols=192  Identities=15%  Similarity=0.084  Sum_probs=109.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHhHhh--ccchHH
Q 041538           20 NPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNF--LPILGAFLADSY--VGRYAM   95 (225)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~G~laDr~--~Grr~~   95 (225)
                      ..+.+|+..+.++...+.....+....+..+......++++.+++-...........+  ..+...+.--|+  +.+|+.
T Consensus       256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~  335 (488)
T KOG2325|consen  256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI  335 (488)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence            3456777777777788888887777677777777777888888775543222222111  122223333332  133444


Q ss_pred             HHHHHHHHHHHHHH--HHHhhh-cCCC----CCCccccccccccccccchhHHHHHHH-HHHHHHhCcccchhhhhhhhh
Q 041538           96 IGFGCITCLLGMVL--LWLTTI-FPHA----RPLACDYTLRDSCESATGSQLMLLYLA-FGLMSLGGGGIRSSSLAFGAD  167 (225)
Q Consensus        96 ~~~~~~~~~i~~~~--l~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~  167 (225)
                      +..++........+  ..+... .|..    .+..|++....-|...+..+...++.. .+++|.+.........++-++
T Consensus       336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk  415 (488)
T KOG2325|consen  336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK  415 (488)
T ss_pred             eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence            44442222222211  111111 1111    122333333335555555555555554 445777777777778888899


Q ss_pred             ccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhh
Q 041538          168 QLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGI  220 (225)
Q Consensus       168 ~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~  220 (225)
                      +..+.+         .+...+.+.....++-.+||++...+....|.++...+
T Consensus       416 iLgp~~---------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~  459 (488)
T KOG2325|consen  416 ILGPRD---------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWII  459 (488)
T ss_pred             HhCCcc---------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHH
Confidence            999877         46666677778888888999998888777777665443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.22  E-value=0.021  Score=49.30  Aligned_cols=94  Identities=21%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             HHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 041538           51 LYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRD  130 (225)
Q Consensus        51 ~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~  130 (225)
                      .|+.+++++.+.+.+.+........++.-.+.|-++||- ||||.-...++.+++++    ++-.               
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiLsC----iTKh---------------  120 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYILSC----ITKH---------------  120 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHHHH----Hhhc---------------
Confidence            456678899999998887777777777788889999997 99998766666555443    3321               


Q ss_pred             ccccccchhHHHHHHHHHHHHHhCcccchhhhh-hhhhccC
Q 041538          131 SCESATGSQLMLLYLAFGLMSLGGGGIRSSSLA-FGADQLE  170 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~p  170 (225)
                            ..+.-++++++++.|+.......+.-+ +++|.-+
T Consensus       121 ------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne  155 (454)
T KOG4332|consen  121 ------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE  155 (454)
T ss_pred             ------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence                  123345788888888776655433322 3444443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.66  E-value=5.6  Score=36.44  Aligned_cols=74  Identities=9%  Similarity=-0.024  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Q 041538           27 TLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCI  101 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (225)
                      ..+.+-...++.+..--.+..-.+.|+.+-+.-+.--....-..-.....++.+..|...||. .|.|++..+.+
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~   76 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLV   76 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHH
Confidence            345555677777777777888888888877654555555555666677777888889999997 99998776654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.27  E-value=0.71  Score=41.81  Aligned_cols=158  Identities=17%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhH-----hhccchHH
Q 041538           21 PKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLAD-----SYVGRYAM   95 (225)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD-----r~~Grr~~   95 (225)
                      .+++.+.+..+++.......- ++....+|..++ .-|.|-++-+.....  ..-...-++...+-|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~a--y~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFA--YWPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhh--hhHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            466777777766666666654 456666666666 556665554433322  222334667788888     87 99997


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCC
Q 041538           96 IGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGI  175 (225)
Q Consensus        96 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~  175 (225)
                      -++=+ -+.+|.+++.++...+...+           .+....++........+.-+..+....+.-.....+..+++  
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~~~g-----------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--  166 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDRGLG-----------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--  166 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCcccc-----------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence            55432 33456666666542222111           01122233334444455555666666666666666766654  


Q ss_pred             CccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          176 KSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       176 ~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                             .+-+...+..+.+.|..++-.+
T Consensus       167 -------lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  167 -------LGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             -------cCchhHHHHHHHhhhHHhhcce
Confidence                   4555555556666666665443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.07  E-value=2.8  Score=38.91  Aligned_cols=139  Identities=17%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             hhHHHHHHHHhHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchH-------HHHHHHHHHHHHHHHHHH
Q 041538           44 GFMPNMILYLCREYNMK----ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYA-------MIGFGCITCLLGMVLLWL  112 (225)
Q Consensus        44 ~~~~~l~~yl~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-------~~~~~~~~~~i~~~~l~~  112 (225)
                      -..+.+..|.++..+.+    +-...+..++..+...+..++..++--|. ++++       -+.++..++..+.+++..
T Consensus       302 Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~  380 (498)
T COG3104         302 QMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLL  380 (498)
T ss_pred             hccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            34455556665432222    11233444555666677777777887775 4441       244555566666655555


Q ss_pred             hhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 041538          113 TTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYV  192 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~  192 (225)
                      ......         .+     +...+++.++...+++++|.=...|.-.+++.+..|+.-         .+..++.+..
T Consensus       381 ~~~~~~---------~~-----~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~---------~s~~ma~wfL  437 (498)
T COG3104         381 AGIWFG---------GP-----SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL---------KSFIMAMWFL  437 (498)
T ss_pred             HHHhhc---------CC-----CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH---------HHHHHHHHHH
Confidence            421000         00     123467788889999999998889999999999999832         5666666666


Q ss_pred             HHhhhhhhHHHhhh
Q 041538          193 SVSASSMVAVTFIV  206 (225)
Q Consensus       193 ~~~ig~~~g~~l~~  206 (225)
                      ....|..++..+.+
T Consensus       438 t~a~~~~l~g~va~  451 (498)
T COG3104         438 TVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHhhceecc
Confidence            66666655555554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=91.77  E-value=4.6  Score=37.58  Aligned_cols=170  Identities=9%  Similarity=-0.044  Sum_probs=95.1

Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCc---hhHHHHHHHHHHH-HHHHHHHHHHHHhHhhccchH
Q 041538           19 KNPKGGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMK---ITEGTNVLFFWSA-ASNFLPILGAFLADSYVGRYA   94 (225)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~   94 (225)
                      +.+|+.++......+..++..+.++....     +.+.+.++   +....++-+.... ...+..++-+++.+++ .|++
T Consensus        20 pi~r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~   93 (509)
T COG3202          20 PIRRYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREK   93 (509)
T ss_pred             eccHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHH
Confidence            33455566666666677776666554433     45555444   2233444444444 5667788899999997 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccc-----cc-h---------hH--HHHHHHHHHHHHhCccc
Q 041538           95 MIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESA-----TG-S---------QL--MLLYLAFGLMSLGGGGI  157 (225)
Q Consensus        95 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~---------~~--~~~~~~~~l~g~g~g~~  157 (225)
                      ++......+.....+.++..      +|-|+.--+++...+     .+ .         .+  .++++.-=+.+  .-..
T Consensus        94 vF~~~~~~F~~fF~LFa~Vi------~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg--slV~  165 (509)
T COG3202          94 VFYIILGFFLGFFALFAFVI------YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG--SLVL  165 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH--HHHH
Confidence            98888777766666666643      222222211111111     01 0         00  11111111111  0001


Q ss_pred             chhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          158 RSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       158 ~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      .-..+.+..|+...++         -.+.+.+++...|++..++..+..++.++
T Consensus       166 S~lFw~faNeitt~~e---------akRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         166 SLLFWQFANEITTIEE---------AKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHHHhhhHHH---------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1134556666666533         67888899999999999998888887653

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.49  E-value=9.8  Score=35.20  Aligned_cols=108  Identities=20%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhHhh--ccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccc--cchhHHHHHHHHH
Q 041538           73 AASNFLPILGAFLADSY--VGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESA--TGSQLMLLYLAFG  148 (225)
Q Consensus        73 ~~~~i~~~~~G~laDr~--~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  148 (225)
                      .+..++....+.+.+|.  +||++.+.++..+..++.++.-+..  |.      |...+++....  -+.+..+..+.-.
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~------dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PN------DAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cc------cCCCCCCcccccccccchhHHHHHHH
Confidence            33444445556666555  5899999998888777766555432  21      00001111000  1123344555567


Q ss_pred             HHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhh
Q 041538          149 LMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASS  198 (225)
Q Consensus       149 l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~  198 (225)
                      +.|++.+..+...+.++.+.+|. +         |...++++-+-..+++
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~~~-~---------~~~~fsi~kfyq~~~s  401 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLYPD-D---------RAQAFSLFKFYQSVAS  401 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcC-c---------hHHHHHHHHHHHHHHH
Confidence            78899998889999999999953 4         4555555444444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.96  E-value=2.9  Score=38.64  Aligned_cols=83  Identities=8%  Similarity=0.025  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHH
Q 041538           65 TNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLY  144 (225)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (225)
                      -....+......+..++++.+-|+. |.|..+.++...+..-..-+...                         +...++
T Consensus        53 y~~~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~y  106 (461)
T KOG3098|consen   53 YYGQAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLY  106 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHH
Confidence            3336666777888899999999997 99999999988776544433332                         346689


Q ss_pred             HHHHHHHHhCcccchhhhhhhhhccCCCC
Q 041538          145 LAFGLMSLGGGGIRSSSLAFGADQLEKGD  173 (225)
Q Consensus       145 ~~~~l~g~g~g~~~~~~~~~~~~~~p~~~  173 (225)
                      ..-.+.|+|.+..+.....++++..+++.
T Consensus       107 fssallG~Gaallw~GqG~ylt~~st~~t  135 (461)
T KOG3098|consen  107 FSSALLGFGAALLWTGQGGYLTSNSTRET  135 (461)
T ss_pred             HHHHHhhhhHHheecccceehhhcCChhh
Confidence            99999999999988888888888777654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=87.81  E-value=3.4  Score=37.47  Aligned_cols=61  Identities=13%  Similarity=0.077  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhhe
Q 041538          139 QLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYI  208 (225)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l  208 (225)
                      +.++.++..+..|+..|+.+......+.|..|+++         |.-..+....+-++|-.++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~---------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED---------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34455555666777778888888888888877755         44444454445555555544444333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=85.93  E-value=17  Score=32.48  Aligned_cols=151  Identities=9%  Similarity=0.030  Sum_probs=71.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      ..-|.++++....+....+|.+. .++......++|    +...  ..........+++.+.+..++ |.|.++.++...
T Consensus        26 ~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg----~~sl--~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~   97 (390)
T KOG3097|consen   26 GILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLG----TVSL--GALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVFP   97 (390)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc----cchh--hhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            34466666666555566665554 444443333222    2211  111223333445555777776 999888876443


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCC--Cc--c
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGI--KS--K  178 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~--~~--~  178 (225)
                      +.     +..+.+.+    |                ...-+.-+-+..|++.+..+.+--.++++.-......  +.  +
T Consensus        98 Y~-----lyiA~Nl~----p----------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~  152 (390)
T KOG3097|consen   98 YA-----LYIAANLE----P----------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGD  152 (390)
T ss_pred             HH-----HHHHhhcc----h----------------hHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccC
Confidence            32     22222111    1                1222444556667777777766666665554322100  00  0


Q ss_pred             c--hhhHHHHHHHHHHHHhhhhhhHHHhhh
Q 041538          179 S--EGALKSYFSWYYVSVSASSMVAVTFIV  206 (225)
Q Consensus       179 ~--~~~r~~~~~~~~~~~~ig~~~g~~l~~  206 (225)
                      +  -+-.+-.+.+++...-+|..++..+..
T Consensus       153 ~~~~~ffg~Ffii~~~~qv~gn~issli~~  182 (390)
T KOG3097|consen  153 GMKVRFFGEFFIIFQCAQVWGNLISSLIMT  182 (390)
T ss_pred             ceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  011244455555556666555555544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.78  E-value=10  Score=34.80  Aligned_cols=55  Identities=9%  Similarity=0.126  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHh
Q 041538          141 MLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTF  204 (225)
Q Consensus       141 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l  204 (225)
                      ...++...++|+-+|-.......+..+..++++         |..+..+..++.++|-.+|..+
T Consensus       373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e---------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE---------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            445666778888888766666666666655533         4444445555555555555444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=82.12  E-value=15  Score=25.98  Aligned_cols=44  Identities=23%  Similarity=0.092  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHH
Q 041538           64 GTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMV  108 (225)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~  108 (225)
                      .+.......++..+++.+.|++.|.. |.+..+........++.+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHH
Confidence            34555667778888899999999987 877776665555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
2xut_A	524	Proton/peptide symporter family protein; transport	6e-33
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-10

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  123 bits (311), Expect = 6e-33
 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 35/206 (16%)

Query: 26  RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEG------TNVLFFWSAASNFLP 79
           R +P+IIA+EA ER +  G    +  +L     + I E        +V   +     F P
Sbjct: 12  RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71

Query: 80  ILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQ 139
           +LG ++AD + G+Y  I +  +   +G   L                       +     
Sbjct: 72  LLGGWIADRFFGKYNTILWLSLIYCVGHAFL-----------------------AIFEHS 108

Query: 140 LMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSM 199
           +   Y    L++LG GGI+    +F  DQ ++ +      +   +  F  +Y +++  S 
Sbjct: 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFTINFGSF 162

Query: 200 VAVTFIVYIQDNLGWKVGFGIPAAIM 225
            A   +  +  N G  V FGIP  +M
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLM 188

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 36/202 (17%)

Query: 26  RTLPFIIANEAFERMASTGFMPNMILYLCREYN-----MKITEGTNVLFFWSAASNFLPI 80
             L  +   E +ER +  G    ++ Y+    +     +      +++  +++       
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 81  LGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQL 140
           +G F+AD  +G    + +G +  +LG ++L                        A     
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVL------------------------ALPFGA 108

Query: 141 MLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMV 200
             L+ +  L+ +G G ++ +         ++ D  +        + FS +   ++  + +
Sbjct: 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRR-------DAGFSIFVFGINLGAFI 161

Query: 201 AVTFIVYIQDNLGWKVGFGIPA 222
           A   +   Q+  G+ V F + A
Sbjct: 162 APLIVGAAQEAAGYHVAFSLAA 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.81
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.76
2xut_A	524	Proton/peptide symporter family protein; transport	99.75
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.72
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.64
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.59
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.53
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.43
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.2
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.16
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.15
2xut_A	524	Proton/peptide symporter family protein; transport	97.87

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.81  E-value=3e-19  Score=160.16  Aligned_cols=170  Identities=18%  Similarity=0.310  Sum_probs=150.9

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhHh-hccchHH
Q 041538           22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCRE-----YNMKITEGTNVLFFWSAASNFLPILGAFLADS-YVGRYAM   95 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr-~~Grr~~   95 (225)
                      ++++|.++...+..++..+.+|++..+++.|++++     +|+++.+.+++.+.+.++..++++++|+++|| + ||||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            34567788888899999999999999999999998     99999999999999999999999999999999 8 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCC
Q 041538           96 IGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGI  175 (225)
Q Consensus        96 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~  175 (225)
                      +..+.++..++.+++.+..                        +...+++++++.|++.+...+...++++|.+|++++ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-  142 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-
T ss_pred             HHHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-
Confidence            9999999988888777644                        345588899999999999999999999999998763 


Q ss_pred             CccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          176 KSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       176 ~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                            .|+..++.++...++|..++|.+++++.++.||++.|++.++
T Consensus       143 ------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~  184 (491)
T 4aps_A          143 ------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAI  184 (491)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             ------cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                  378888889999999999999999999998999999987643

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.76  E-value=1.6e-17  Score=146.34  Aligned_cols=159  Identities=13%  Similarity=0.067  Sum_probs=129.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      .+++.+.......+...+........+| ++++++|+++.+.+++.+...+...++.++.|+++||+ ||||++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence            3444444455555566665554444444 57789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++.+++.....                     ..+...+++++++.|++.+...+...+++.|.+|+++         
T Consensus       101 ~~~~~~~~~~~~~---------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------  150 (438)
T 3o7q_A          101 YALGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---------  150 (438)
T ss_dssp             HHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---------
T ss_pred             HHHHHHHHHhccc---------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---------
Confidence            9988887743220                     1246678999999999999999999999999999866         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhhee-cccC
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQ-DNLG  213 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~-~~~g  213 (225)
                      |+...++.+...++|..++|.+++++. +..+
T Consensus       151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            899999999999999999999999887 5554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.75  E-value=1.2e-17  Score=150.95  Aligned_cols=171  Identities=26%  Similarity=0.472  Sum_probs=145.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH
Q 041538           24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYN------MKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG   97 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~   97 (225)
                      ++|.++...+..++..+.+|++..+++.|+++++|      +++.+.+++.+...+...++++++|+++||++||||++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34566677788999999999999999999999999      999999999999999999999999999999449999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCc
Q 041538           98 FGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKS  177 (225)
Q Consensus        98 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~  177 (225)
                      ++.++..++.+++.+..                       .+...+++.+++.|++.+...+...+++.|.+|+++|   
T Consensus        90 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---  143 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---  143 (524)
T ss_dssp             HHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---
T ss_pred             HHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---
Confidence            99988888887776543                       1345688889999999999999999999999998774   


Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          178 KSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       178 ~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                         +.+.+.+++++...++|..++|.+.+++.++.||++.|++.++
T Consensus       144 ---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~  186 (524)
T 2xut_A          144 ---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGV  186 (524)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence               2245666778999999999999999999888899999987654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.72  E-value=8.8e-18  Score=148.26  Aligned_cols=163  Identities=12%  Similarity=0.037  Sum_probs=137.0

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      ++.++...+..+......+.+...+|.+.+ ++ .++.+.+++.+...+...++.++.|+++||+ |||+++..+.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            344445555666666666666666665554 66 9999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHH----hhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccch
Q 041538          105 LGMVLLWL----TTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSE  180 (225)
Q Consensus       105 i~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~  180 (225)
                      ++.+++.+    ..                        +...+++.+++.|++.+...+...+++.|.+|+++       
T Consensus       104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-------  152 (451)
T 1pw4_A          104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-------  152 (451)
T ss_dssp             HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-------
T ss_pred             HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-------
Confidence            99888887    44                        23458888999999999999999999999999755       


Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538          181 GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA  223 (225)
Q Consensus       181 ~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~  223 (225)
                        |++..++.+...++|..++|.+++++.+..| |++.|++.++
T Consensus       153 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~  194 (451)
T 1pw4_A          153 --RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF  194 (451)
T ss_dssp             --HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              8999999999999999999999999888888 9999987654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.64  E-value=9.5e-16  Score=132.76  Aligned_cols=159  Identities=17%  Similarity=0.210  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHH
Q 041538           30 FIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVL  109 (225)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~  109 (225)
                      ......+..........+.+|. +.+++|.++.+.+++.+...+...++.++.|+++||+ ||||.+..+.++..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence            3444556666666656666665 4568999999999999999999999999999999998 9999999999999888888


Q ss_pred             HHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH
Q 041538          110 LWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW  189 (225)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~  189 (225)
                      +.+..                        +...+++.+.+.|++.+...+...+++.|.+|+++         |++.++.
T Consensus        82 ~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  128 (375)
T 2gfp_A           82 AVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---------LRHANSL  128 (375)
T ss_dssp             HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------CCSHHHH
T ss_pred             HHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---------HHHHHHH
Confidence            77755                        45668889999999999999999999999999866         6778888


Q ss_pred             HHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          190 YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       190 ~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      .+...++|..++|.+.+++.++.||++.|.+.++
T Consensus       129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (375)
T 2gfp_A          129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV  162 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence            9999999999999999999988899999886543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.59  E-value=1.7e-14  Score=127.19  Aligned_cols=166  Identities=15%  Similarity=0.191  Sum_probs=135.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cchHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYV--GRYAMIGFGCITC  103 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~--Grr~~~~~~~~~~  103 (225)
                      |.++...+..++....++++..++|.|+++.+|+++.+.+.......++..++.++.|+++|| +  |||+.+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            556667777788888888899999999999899999999999999999999999999999999 5  8888887776655


Q ss_pred             H-HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          104 L-LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       104 ~-i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      . ++..++.+..                      ..+.....+...+.+++.+...+....++.|.+|+++         
T Consensus       331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------  379 (451)
T 1pw4_A          331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------  379 (451)
T ss_dssp             HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------
T ss_pred             HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---------
Confidence            4 4444333221                      1134556666777888888888888899999999855         


Q ss_pred             HHHHHHHHHHHHhh-hhhhHHHhhhheecccCcchhhhhhhc
Q 041538          183 LKSYFSWYYVSVSA-SSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       183 r~~~~~~~~~~~~i-g~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      |++..++++...++ |..++|.+.+++.++.||+..|++.++
T Consensus       380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  421 (451)
T 1pw4_A          380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  421 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            89999999999999 999999999999999999988876553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.53  E-value=1.7e-13  Score=120.45  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=128.7

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHH-HhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILY-LCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC  103 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (225)
                      .|.++...+..++.....+....++|.| +++.+|+++.+.+.......+...++.+++|+++||+ |||+.+..+.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3556666667777777778888999999 8888899999999999999999999999999999997 9999999988888


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538          104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL  183 (225)
Q Consensus       104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r  183 (225)
                      .++.+++.+..                        +.. ......+.+++.+...+...++..|.+|++          +
T Consensus       336 ~~~~~~~~~~~------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~  380 (438)
T 3o7q_A          336 MALCLISAFAG------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD----------T  380 (438)
T ss_dssp             HHHHHHHHHCC------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG----------H
T ss_pred             HHHHHHHHHcC------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------c
Confidence            77776665533                        122 233446677888888888999988988862          3


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538          184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA  223 (225)
Q Consensus       184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~  223 (225)
                      +.+.++.. ...+|+.++|.+.|++.+..| ++..|.+.++
T Consensus       381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_dssp             HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred             cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            44455444 567999999999999999988 9988876543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.43  E-value=1.7e-12  Score=115.92  Aligned_cols=133  Identities=8%  Similarity=-0.031  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHH
Q 041538           62 TEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLM  141 (225)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (225)
                      .+.+++.+.+.++..+++++.|+++||+ |||+++.++.+++.++.++.++..........      ...-...-..+..
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~~~  127 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhhHH
Confidence            3456778888899999999999999998 99999999999999998888764311100000      0000000123567


Q ss_pred             HHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheec
Q 041538          142 LLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQD  210 (225)
Q Consensus       142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~  210 (225)
                      .++++|++.|++.|+..+..+.+++|..|++.         |+...++.+....+|..+++.+...+..
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~---------rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI---------RGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh---------hhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            89999999999999999999999999999855         8998889888888888888777765543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=6e-13  Score=117.67  Aligned_cols=163  Identities=6%  Similarity=-0.010  Sum_probs=111.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMK---ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT  102 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (225)
                      |..+...+..+.....++....++|.|+++.++.+   ..+.+....+..+...++.++.|+++||+ ||||.+..+.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            33333333334444445555667888987766532   34445666666677788899999999998 999998887777


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++..++.+..                        +...+.+...+.+++.+...+....+..|.+|++.         
T Consensus       299 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---------  345 (417)
T 2cfq_A          299 MSVRIIGSSFAT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF---------  345 (417)
T ss_dssp             HHHHHHHHTTCC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH---------
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------
Confidence            666554443221                        22334444455555555555666789999999844         


Q ss_pred             HHHHHHH-HHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          183 LKSYFSW-YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       183 r~~~~~~-~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      |++..+. ++...++|+.++|.+.|++.++.|++..|.+.+
T Consensus       346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            8888888 477788999999999999988888887776544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=2.8e-13  Score=119.76  Aligned_cols=169  Identities=9%  Similarity=-0.019  Sum_probs=110.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |..+......+.....+....+++|.|+++++|+++.+.+.+.+...+...+++++.|+++||+ ||||++.++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4555555556666666677789999999999999999999999999999999999999999998 999999988776654


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +...+......+.                    ....+...+.+.+++.+...+...+...+..++..       +.++.
T Consensus        86 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~  138 (417)
T 2cfq_A           86 MFAPFFIFIFGPL--------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-------RRSNF  138 (417)
T ss_dssp             CHHHHHHHTHHHH--------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-------HHHTC
T ss_pred             HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-------hhccc
Confidence            3221111000000                    00001222333333333333333333433333211       11344


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA  223 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~  223 (225)
                      .++..+...++|..++|.+.+++.+ .+|++.|++.++
T Consensus       139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~  175 (417)
T 2cfq_A          139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG  175 (417)
T ss_dssp             CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence            4555566789999999999998876 589998886654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.20  E-value=2.2e-12  Score=111.45  Aligned_cols=164  Identities=9%  Similarity=-0.040  Sum_probs=122.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH-HH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT-CL  104 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~-~~  104 (225)
                      |.++...+..++.....+.+..+.|.|+++++|+++.+.+.......++..++.++.++++||+ || +. ..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~~-~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-LM-WQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-HH-HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HH-HHHHHHHHH
Confidence            4455566667777777888889999999998999999999999999999999999999999998 77 22 222222 22


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      .+..++.....                    ...+...+++...+.+++.+...+....+..|.+| ++         |+
T Consensus       276 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~---------~g  325 (375)
T 2gfp_A          276 AGLLMWIPDWF--------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL---------AG  325 (375)
T ss_dssp             TSSSSSHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH---------HH
T ss_pred             HHHHHHHHhhh--------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc---------cc
Confidence            22221111110                    01134456667777888888888999999999987 34         89


Q ss_pred             HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538          185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      +..+..+...++|..++|.+.+.+.+..+|...+...+
T Consensus       326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999999999999988777777776543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.16  E-value=4.3e-10  Score=100.24  Aligned_cols=156  Identities=8%  Similarity=0.040  Sum_probs=105.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      +.+.......++.....+....+..+++.+..+.+..+.........+...++.++++++.||+ |||+.+..+.....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI  354 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence            3344444444444443333334444556667788888888888888888999999999999998 999999998888877


Q ss_pred             HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538          106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS  185 (225)
Q Consensus       106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~  185 (225)
                      +.+.+.......                  ......+........+.+.+ ..+..+.+.+|.+|++.         |++
T Consensus       355 ~~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~---------R~~  406 (491)
T 4gc0_A          355 GMFSLGTAFYTQ------------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI---------RGK  406 (491)
T ss_dssp             HHHHHHHHHHTT------------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT---------HHH
T ss_pred             HHHHHHHHHhcc------------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH---------HHH
Confidence            777666543111                  11122222222222333333 34667789999999966         899


Q ss_pred             HHHHHHHHHhhhhhhHHHhhhheec
Q 041538          186 YFSWYYVSVSASSMVAVTFIVYIQD  210 (225)
Q Consensus       186 ~~~~~~~~~~ig~~~g~~l~~~l~~  210 (225)
                      +.++.+....+++.+++.+.+.+.+
T Consensus       407 ~~g~~~~~~~~~~~i~~~~~p~l~~  431 (491)
T 4gc0_A          407 ALAIAVAAQWLANYFVSWTFPMMDK  431 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888877654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.15  E-value=9.7e-11  Score=104.62  Aligned_cols=168  Identities=10%  Similarity=0.019  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH-----HHHHH
Q 041538           28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG-----FGCIT  102 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-----~~~~~  102 (225)
                      .+...+..+.....+.....+++.|+++.++.+..+.+.......+...++.++.|++.||+ |||+...     .+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            34444455566666777788899999998888877777778888888888999999999997 9886544     55556


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538          103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA  182 (225)
Q Consensus       103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  182 (225)
                      ..++..++........               .....+...+.+...+.+++.+...+....+..|.+|++.         
T Consensus       364 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---------  419 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---------  419 (491)
T ss_dssp             HHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---------
T ss_pred             HHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---------
Confidence            6666555544321100               0011234556677788888888888889999999999876         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538          183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP  221 (225)
Q Consensus       183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~  221 (225)
                      |+++.++++...++|..++|.+.+++.+. ++...|...
T Consensus       420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~  457 (491)
T 4aps_A          420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYF  457 (491)
T ss_dssp             SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence            68888888999999999999999988764 555555543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.87  E-value=1.6e-06  Score=77.82  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc
Q 041538          139 QLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN  211 (225)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~  211 (225)
                      +...+.+..++.+++.+...+....+..|..|++.         |+++.++++...++|+.++|.+.+.+.+.
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM---------KGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC---------CTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34456667788888888888999999999999866         78889999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.69
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.48
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.39
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.4e-17  Score=140.71  Aligned_cols=147  Identities=12%  Similarity=0.067  Sum_probs=123.5

Q ss_pred             HHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 041538           46 MPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACD  125 (225)
Q Consensus        46 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  125 (225)
                      .+...++++ ++|+|++|.+++.+.+.++..++++++|+++||+ ||||++.++.++..++.++..+.....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            344556776 5899999999999999999999999999999998 999999999999888888777654211        


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhh
Q 041538          126 YTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFI  205 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~  205 (225)
                                  .+...+++.+.+.+++.+...+....++.|.+|+++         |++..++.+...++|..++|.+.
T Consensus       114 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~i~~~~~  172 (447)
T d1pw4a_         114 ------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLF  172 (447)
T ss_dssp             ------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc---------ccccccccccccchhhhhhhhhh
Confidence                        234568888999999999999999999999999855         89999999999999999999998


Q ss_pred             hheeccc-Ccchhhhhhhc
Q 041538          206 VYIQDNL-GWKVGFGIPAA  223 (225)
Q Consensus       206 ~~l~~~~-g~~~~f~~~~~  223 (225)
                      +.+.+.. +|++.|++.++
T Consensus       173 ~~~~~~~~~w~~~~~~~~~  191 (447)
T d1pw4a_         173 LLGMAWFNDWHAALYMPAF  191 (447)
T ss_dssp             HHHHHHTCCSTTCTHHHHH
T ss_pred             hhHhhhhhcccccchhhhh
Confidence            8765544 78888876543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.6e-13  Score=116.61  Aligned_cols=169  Identities=14%  Similarity=0.074  Sum_probs=127.7

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538           25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL  104 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (225)
                      .|.++......++.....++...+.+.|+++.++++..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            35556666677777778888999999999999999999999999999999999999999999998 87765444333332


Q ss_pred             HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538          105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK  184 (225)
Q Consensus       105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~  184 (225)
                      +...........                   ...+.....+...+.+++.+...+....+..|.+|++.         |+
T Consensus       327 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g  378 (447)
T d1pw4a_         327 LVTIATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------AG  378 (447)
T ss_dssp             HHHHHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------HH
T ss_pred             HHHHHHHHHHhc-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---------HH
Confidence            222222221100                   12245556666777788877777888899999999854         89


Q ss_pred             HHHHHHHHHHhhh-hhhHHHhhhheecccCcchhhhhhh
Q 041538          185 SYFSWYYVSVSAS-SMVAVTFIVYIQDNLGWKVGFGIPA  222 (225)
Q Consensus       185 ~~~~~~~~~~~ig-~~~g~~l~~~l~~~~g~~~~f~~~~  222 (225)
                      ++.++.+...+++ ..++|.+.+++.++.||+..|.+.+
T Consensus       379 ~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~  417 (447)
T d1pw4a_         379 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  417 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            9999988887774 5678999999999999998877544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=3.7e-13  Score=112.70  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=77.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538           26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL  105 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i  105 (225)
                      |..|...+..++..+......+++|.|+++++|+|+++.+++.+...+...+++++.|+++||+ ||||.+.++.....+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            6677777778888888877888999999999999999999999999999999999999999998 999999998888877


Q ss_pred             HHHHHHHhh
Q 041538          106 GMVLLWLTT  114 (225)
Q Consensus       106 ~~~~l~~~~  114 (225)
                      +...+....
T Consensus        86 ~~~~~~~~~   94 (417)
T d1pv7a_          86 MFAPFFIFI   94 (417)
T ss_dssp             THHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            777666644

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.8e-13  Score=114.73  Aligned_cols=134  Identities=5%  Similarity=-0.033  Sum_probs=109.4

Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccc
Q 041538           56 EYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESA  135 (225)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.+.+............+...++..+.+++.||+ |||+.+..+.++..++...+.+..                     
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~---------------------  310 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT---------------------  310 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc---------------------
Confidence            3345566667777888888899999999999998 999999999888877776666543                     


Q ss_pred             cchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHH-HHHHhhhhhhHHHhhhheecccCc
Q 041538          136 TGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWY-YVSVSASSMVAVTFIVYIQDNLGW  214 (225)
Q Consensus       136 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~g~~l~~~l~~~~g~  214 (225)
                         +...+++...+.+++.+...+....++.|.+|++.         |++..+.. +....+|..++|.+.|++.|+.|+
T Consensus       311 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~  378 (417)
T d1pv7a_         311 ---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF---------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF  378 (417)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG---------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence               34556777788888888888999999999999855         88888875 456779999999999999999999


Q ss_pred             chhhhhhhc
Q 041538          215 KVGFGIPAA  223 (225)
Q Consensus       215 ~~~f~~~~~  223 (225)
                      +..|.+.++
T Consensus       379 ~~~~~~~~~  387 (417)
T d1pv7a_         379 QGAYLVLGL  387 (417)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988876654