Citrus Sinensis ID: 041545

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MHWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE
cccHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccEEEEEEEcccHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHcccccccHHHHHHHHHHHHHHHHHHccccHHHcHHccc
MHWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVkdldmakpkhkrrreldpdsnsrwfhldDSAFESFRKMCSEVVLLVdnstgesnislKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDvqnesnedktQRESLMASVLITLEAVIDKLGgflnpylgdITELLVLcpeylpgsdpklKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLalppllkiysgavdagdsSLVIAFEILGNIIsrmdrssiggfhgkIFDQCLLALDLRRQhrvsiqdidIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHltdakgvntanstRKKKARIQEAGtikeqngslsiNHWQLRALVISSLHkcflydtaslkfldstnfQVLLKPIVSqlaaeppagleehlnvptvkevDDLLVVCIGQMAVtagtdllwkplnhe
MHWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLdmakpkhkrrreldpdsnsrwfHLDDSAFESFRKMCSEVVLLVDnstgesnislKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIStyvdvqnesnedktqreSLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRvsiqdidiveksVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTdakgvntanstrkkkariqeagtikeqngslsiNHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAvtagtdllwkplnhe
MHWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMlvidfdlkfllfilhlvrlalppllKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE
**WLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDL********************WFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVR*************************LMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGV***********************GSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWK*****
****E**LSVAPVNLYASLFNGEICTCEQALGLLCETV*********************************SFRKMCSEVVLL***********LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI*****ALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI******************SLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCP*******************LLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHR*****IDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESD***********IDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAK**********************EQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLE*HL*VPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNH*
MHWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDM**************SNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVD************ESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNT************EAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE
*HWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKR**E*DPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDV******KSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAK*************************GSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLN**
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
Q9C8Z42197 Uncharacterized protein A yes no 0.893 0.225 0.554 1e-159
Q7SY482159 HEAT repeat-containing pr yes no 0.705 0.181 0.259 2e-21
Q54ML4 2237 HEAT repeat-containing pr yes no 0.409 0.101 0.284 9e-21
Q9H5832144 HEAT repeat-containing pr yes no 0.788 0.203 0.226 4e-19
Q9GM44958 HEAT repeat-containing pr N/A no 0.796 0.460 0.231 3e-18
Q9VM752096 HEAT repeat-containing pr yes no 0.608 0.160 0.239 3e-14
Q754J81774 U3 small nucleolar RNA-as yes no 0.617 0.192 0.226 3e-13
Q6FT931770 U3 small nucleolar RNA-as yes no 0.259 0.081 0.278 8e-10
Q4P9372251 U3 small nucleolar RNA-as N/A no 0.232 0.057 0.312 1e-09
O601791649 U3 small nucleolar RNA-as yes no 0.285 0.095 0.253 3e-09
>sp|Q9C8Z4|HEAT1_ARATH Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=2 SV=3 Back     alignment and function desciption
 Score =  561 bits (1445), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/536 (55%), Positives = 380/536 (70%), Gaps = 41/536 (7%)

Query: 20   FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSE 79
            +NG     ++ LGL+ E  KD   +K KHKR+       NS W +LD+ A +SF KMC E
Sbjct: 1626 YNG----TKKVLGLISERAKDTSSSKMKHKRKISNQKGRNS-WLNLDEVAVDSFGKMCEE 1680

Query: 80   VVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSC 139
            +V L++ +  ES + +K  A+STLEVLA RF S   +F  CLA+V   ISS+NL ++SSC
Sbjct: 1681 IVHLINATDDESGVPVKRAAISTLEVLAGRFPSGHPIFRKCLAAVAECISSKNLGVSSSC 1740

Query: 140  LRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESL-MASVLI 198
            LRTTGAL+NVLG KAL ELP IM+N+ K+S E+S      ++S  + T  E L M SVL+
Sbjct: 1741 LRTTGALINVLGPKALIELPCIMKNLVKQSLEVS----FASQSGRNATAEEQLLMLSVLV 1796

Query: 199  TLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIK 258
            TLEAVIDKLGGFLNP+LGDI +++VL PEY+   D  LK KA+A+RRLLTDKI V     
Sbjct: 1797 TLEAVIDKLGGFLNPHLGDIMKIMVLHPEYVSDFDKNLKSKANAIRRLLTDKIPV----- 1851

Query: 259  MLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIG 318
                              RL L PLL+IY+ AV +G++SLVIAF +L +++ +MDRSSI 
Sbjct: 1852 ------------------RLTLQPLLRIYNEAVSSGNASLVIAFNMLEDLVVKMDRSSIV 1893

Query: 319  GFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEW 378
              HGKIFDQCL+ALD+RR +  +IQ+ID  E+SV S +++LT KLTE+ FRPLFIRSI+W
Sbjct: 1894 SSHGKIFDQCLVALDIRRLNPAAIQNIDDAERSVTSAMVALTKKLTESEFRPLFIRSIDW 1953

Query: 379  AESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNT 438
            AESDV D    ++KSIDRAI FY LV++L ESHRS+FVPYFKY+L+G V HLT A+   +
Sbjct: 1954 AESDVVDGSGSENKSIDRAISFYGLVDRLCESHRSIFVPYFKYVLDGIVAHLTTAEA--S 2011

Query: 439  ANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQV 498
             ++ +KKKA+IQ+       + S+    W LRALV+S L  CFL+DT SLKFLD+ NFQV
Sbjct: 2012 VSTRKKKKAKIQQT------SDSIQPKSWHLRALVLSCLKNCFLHDTGSLKFLDTNNFQV 2065

Query: 499  LLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE 554
            LLKPIVSQL  EPP+ L+EH +VP+V EVDDLLV CIGQMAV +G+DLLWKPLNHE
Sbjct: 2066 LLKPIVSQLVVEPPSSLKEHPHVPSVDEVDDLLVSCIGQMAVASGSDLLWKPLNHE 2121
Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7SY48|HEAT1_DANRE HEAT repeat-containing protein 1 OS=Danio rerio GN=heatr1 PE=2 SV=1 Back     alignment and function description
>sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog OS=Dictyostelium discoideum GN=heatr1 PE=3 SV=1 Back     alignment and function description
>sp|Q9H583|HEAT1_HUMAN HEAT repeat-containing protein 1 OS=Homo sapiens GN=HEATR1 PE=1 SV=3 Back     alignment and function description
>sp|Q9GM44|HEAT1_MACFA HEAT repeat-containing protein 1 (Fragment) OS=Macaca fascicularis GN=HEATR1 PE=2 SV=2 Back     alignment and function description
>sp|Q9VM75|HEAT1_DROME HEAT repeat-containing protein 1 homolog OS=Drosophila melanogaster GN=l(2)k09022 PE=2 SV=2 Back     alignment and function description
>sp|Q754J8|UTP10_ASHGO U3 small nucleolar RNA-associated protein 10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=UTP10 PE=3 SV=1 Back     alignment and function description
>sp|Q6FT93|UTP10_CANGA U3 small nucleolar RNA-associated protein 10 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UTP10 PE=3 SV=1 Back     alignment and function description
>sp|Q4P937|UTP10_USTMA U3 small nucleolar RNA-associated protein 10 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UTP10 PE=3 SV=1 Back     alignment and function description
>sp|O60179|UTP10_SCHPO U3 small nucleolar RNA-associated protein 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
255539883 2130 conserved hypothetical protein [Ricinus 0.909 0.236 0.621 1e-180
359490151 1961 PREDICTED: uncharacterized protein At3g0 0.900 0.254 0.623 1e-175
297745033 2146 unnamed protein product [Vitis vinifera] 0.900 0.232 0.608 1e-172
356499388 2147 PREDICTED: uncharacterized protein At3g0 0.898 0.231 0.571 1e-163
356553575 2097 PREDICTED: uncharacterized protein At3g0 0.886 0.234 0.563 1e-158
297829192 1910 hypothetical protein ARALYDRAFT_477959 [ 0.888 0.257 0.557 1e-157
334185140 2199 U3 small nucleolar RNA-associated protei 0.893 0.225 0.554 1e-157
12322679 1830 hypothetical protein; 63771-52730 [Arabi 0.893 0.270 0.554 1e-157
334185142 2188 U3 small nucleolar RNA-associated protei 0.893 0.226 0.554 1e-157
334185138 2197 U3 small nucleolar RNA-associated protei 0.893 0.225 0.554 1e-157
>gi|255539883|ref|XP_002511006.1| conserved hypothetical protein [Ricinus communis] gi|223550121|gb|EEF51608.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 329/529 (62%), Positives = 397/529 (75%), Gaps = 25/529 (4%)

Query: 28   EQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNS 87
            ++ALGLLCET++D +  K KHK R+EL+ +S++ W H+D+S  ESF KMC E+V LVD+ 
Sbjct: 1548 KKALGLLCETLRDHESNKTKHKGRKELNANSSTGWLHMDESLLESFHKMCLEIVGLVDDV 1607

Query: 88   TGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147
              E + SLKL+A+STLEVLA+ F+S  S+ ++CL S+T  ISS NLA++SSCLRT GALV
Sbjct: 1608 KNEVDTSLKLSAISTLEVLAHSFSSDYSILSMCLPSITRGISSPNLAISSSCLRTAGALV 1667

Query: 148  NVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL 207
            NVLG +AL+ELP IM+N+ K S EI +     + S    T +ES M SVL+TLEAV+DKL
Sbjct: 1668 NVLGPRALSELPRIMKNLIKISHEIPSRSGNDDTSPALSTSKESFMQSVLVTLEAVVDKL 1727

Query: 208  GGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLK 267
            GGFL+PYL ++  L+VL  EY   S PKLK+KAD VRRLLT+KI                
Sbjct: 1728 GGFLHPYLEEVIGLVVLGVEYTTESKPKLKLKADVVRRLLTEKIP--------------- 1772

Query: 268  FLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQ 327
                    VRLALPPLL IYS AV +GDSS+ I F++L  II +MDRSS+GG H KIFD 
Sbjct: 1773 --------VRLALPPLLAIYSDAVKSGDSSVSITFKMLVGIIGQMDRSSVGGHHEKIFDL 1824

Query: 328  CLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIG 387
            CL ALDLRRQH VSIQ+IDIVEKSVI  +ISLTMKLTE+MF+PLFI S++WAES VE+I 
Sbjct: 1825 CLRALDLRRQHPVSIQNIDIVEKSVIDAMISLTMKLTESMFKPLFISSVDWAESHVEEID 1884

Query: 388  SMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANST-RKKK 446
            +    S+DR+I  Y LVNKLAE+HRSLFVPYFKYLLEGCVQHL DA     A  T +KKK
Sbjct: 1885 NEGGASVDRSIALYGLVNKLAENHRSLFVPYFKYLLEGCVQHLLDAVDAKNAGLTQKKKK 1944

Query: 447  ARIQEAGT-IKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVS 505
            A+IQEAG  + E+   LS+  W LRA VIS+LHKCFLYDT SLKFLDS+NFQVLLKPIVS
Sbjct: 1945 AKIQEAGMDVNEKTSLLSLKTWHLRASVISALHKCFLYDTGSLKFLDSSNFQVLLKPIVS 2004

Query: 506  QLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE 554
            QL  EPP  L EH  +P+++EVDDLLVVCIGQMAVTAGTDLLWKPLNHE
Sbjct: 2005 QLVVEPPTSLGEHPGIPSIEEVDDLLVVCIGQMAVTAGTDLLWKPLNHE 2053

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490151|ref|XP_002264777.2| PREDICTED: uncharacterized protein At3g06530-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745033|emb|CBI38625.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499388|ref|XP_003518523.1| PREDICTED: uncharacterized protein At3g06530-like [Glycine max] Back     alignment and taxonomy information
>gi|356553575|ref|XP_003545130.1| PREDICTED: uncharacterized protein At3g06530-like [Glycine max] Back     alignment and taxonomy information
>gi|297829192|ref|XP_002882478.1| hypothetical protein ARALYDRAFT_477959 [Arabidopsis lyrata subsp. lyrata] gi|297328318|gb|EFH58737.1| hypothetical protein ARALYDRAFT_477959 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334185140|ref|NP_001189828.1| U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein [Arabidopsis thaliana] gi|332640887|gb|AEE74408.1| U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12322679|gb|AAG51331.1|AC020580_11 hypothetical protein; 63771-52730 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334185142|ref|NP_001189829.1| U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein [Arabidopsis thaliana] gi|332640888|gb|AEE74409.1| U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334185138|ref|NP_187305.5| U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein [Arabidopsis thaliana] gi|357529499|sp|Q9C8Z4.3|HEAT1_ARATH RecName: Full=Uncharacterized protein At3g06530 gi|332640886|gb|AEE74407.1| U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
DICTYBASE|DDB_G0285875 2237 DDB_G0285875 "BP28, C-terminal 0.193 0.047 0.318 1.7e-24
UNIPROTKB|Q5T3Q72063 HEATR1 "HEAT repeat-containing 0.203 0.054 0.286 1.7e-15
ZFIN|ZDB-GENE-030131-63782159 heatr1 "HEAT repeat containing 0.393 0.100 0.297 1.7e-15
UNIPROTKB|Q9H5832144 HEATR1 "HEAT repeat-containing 0.203 0.052 0.286 1.9e-15
FB|FBgn00864512096 l(2)k09022 "lethal (2) k09022" 0.178 0.047 0.306 8.3e-11
SGD|S0000036451769 UTP10 "Nucleolar protein" [Sac 0.249 0.078 0.272 2.9e-08
UNIPROTKB|E2R4762141 HEATR1 "Uncharacterized protei 0.203 0.052 0.303 1.6e-07
POMBASE|SPBC23E6.04c1649 utp10 "U3 snoRNP-associated pr 0.254 0.085 0.268 1.9e-07
UNIPROTKB|F1RHL72149 HEATR1 "Uncharacterized protei 0.203 0.052 0.278 2.2e-07
RGD|15647692143 Heatr1 "HEAT repeat containing 0.203 0.052 0.286 1.1e-06
DICTYBASE|DDB_G0285875 DDB_G0285875 "BP28, C-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 158 (60.7 bits), Expect = 1.7e-24, Sum P(4) = 1.7e-24
 Identities = 35/110 (31%), Positives = 63/110 (57%)

Query:   287 YSGAVDA-GDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDI 345
             Y  AV +  D SL+  F+ +G+I + +    I   H  IF   L   + R++++  +++ 
Sbjct:  1820 YEFAVQSENDLSLICLFDFVGDISANLGPKDIALHHKSIFKFYLQCFEFRKKYKNRVKNA 1879

Query:   346 DIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSID 395
             D VE  +IS+ ++L MKL E +F+PLFI+ ++WA  ++++ G    K  D
Sbjct:  1880 DKVEDHIISSFMTLVMKLNENLFKPLFIKVLDWA-LNIQN-GQQNGKHTD 1927
GO:0030515 "snoRNA binding" evidence=ISS
GO:0006364 "rRNA processing" evidence=IEA;ISS
GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS
GO:0042254 "ribosome biogenesis" evidence=IEA
GO:0030529 "ribonucleoprotein complex" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005730 "nucleolus" evidence=IEA
UNIPROTKB|Q5T3Q7 HEATR1 "HEAT repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6378 heatr1 "HEAT repeat containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H583 HEATR1 "HEAT repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0086451 l(2)k09022 "lethal (2) k09022" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000003645 UTP10 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|E2R476 HEATR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
POMBASE|SPBC23E6.04c utp10 "U3 snoRNP-associated protein Utp10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHL7 HEATR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1564769 Heatr1 "HEAT repeat containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.263.27.1
annotation not avaliable (1810 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
pfam08146149 pfam08146, BP28CT, BP28CT (NUC211) domain 8e-40
smart01036151 smart01036, BP28CT, BP28CT (NUC211) domain 2e-39
>gnl|CDD|219728 pfam08146, BP28CT, BP28CT (NUC211) domain Back     alignment and domain information 
 Score =  141 bits (358), Expect = 8e-40
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 30/174 (17%)

Query: 314 RSSIGGFHGKIFDQCLLALDLRRQHRV--SIQDIDIVEKSVISTVISLTMKLTETMFRPL 371
           +S++     ++ +  L ALD RR+ R    ++++D +E SVIS  +++ +KL E+ FRPL
Sbjct: 1   KSALTSNSSELSELFLSALDFRREQRAKFDLEEVDEIEASVISAFVTMVLKLNESTFRPL 60

Query: 372 FIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLT 431
           F + ++WA   + +     S S +R I F+  +N+LAE  +SLF  Y  YLLE  V+ L 
Sbjct: 61  FSKLVDWAVPGLGE--KDDSASRERLITFFKFLNRLAEKLKSLFTSYASYLLEPAVELL- 117

Query: 432 DAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDT 485
                 T NS+                      +  +LR LV+ SL   F +D 
Sbjct: 118 -----KTFNSS--------------------DADSVELRRLVLRSLRSSFEHDQ 146

This C terminal domain is found in BAP28-like nucleolar proteins. Length = 149
>gnl|CDD|214987 smart01036, BP28CT, BP28CT (NUC211) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
KOG18371621 consensus Uncharacterized conserved protein [Funct 100.0
PF08146153 BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.88
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.82
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.16
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.78
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.71
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.48
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.34
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.24
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.93
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.91
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.82
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.6
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.6
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 97.29
KOG1242569 consensus Protein containing adaptin N-terminal re 97.28
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.13
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.12
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.03
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.99
KOG12481176 consensus Uncharacterized conserved protein [Funct 96.97
PTZ00429746 beta-adaptin; Provisional 96.94
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.84
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.82
KOG1242569 consensus Protein containing adaptin N-terminal re 96.7
KOG2956516 consensus CLIP-associating protein [General functi 96.61
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.59
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.37
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.37
PF14500262 MMS19_N: Dos2-interacting transcription regulator 96.22
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.19
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.06
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.03
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.01
PF05004309 IFRD: Interferon-related developmental regulator ( 95.98
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.95
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 95.93
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 95.83
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.75
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.36
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.25
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 95.16
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.15
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.94
KOG0212675 consensus Uncharacterized conserved protein [Funct 94.94
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 94.86
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 94.86
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.86
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 94.78
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.64
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 94.63
PTZ00429 746 beta-adaptin; Provisional 94.62
PRK09687280 putative lyase; Provisional 94.56
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.39
PF08167165 RIX1: rRNA processing/ribosome biogenesis 94.28
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.15
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.96
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.9
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 93.77
KOG0212 675 consensus Uncharacterized conserved protein [Funct 93.73
PRK09687280 putative lyase; Provisional 93.69
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 93.46
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.44
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 93.37
KOG22741005 consensus Predicted importin 9 [Intracellular traf 93.33
KOG09151702 consensus Uncharacterized conserved protein [Funct 92.55
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 92.55
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 92.52
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 92.25
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 92.15
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 91.87
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 91.0
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 90.91
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 90.78
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 90.77
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 90.22
KOG2081559 consensus Nuclear transport regulator [Intracellul 90.22
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 89.79
KOG2956516 consensus CLIP-associating protein [General functi 89.44
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.2
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 89.05
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 88.9
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 88.59
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 88.4
COG5656970 SXM1 Importin, protein involved in nuclear import 88.31
PF13251182 DUF4042: Domain of unknown function (DUF4042) 88.09
PF14500262 MMS19_N: Dos2-interacting transcription regulator 88.04
KOG1820815 consensus Microtubule-associated protein [Cytoskel 87.56
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 87.16
KOG2032533 consensus Uncharacterized conserved protein [Funct 86.88
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 85.35
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 84.03
PF1036392 DUF2435: Protein of unknown function (DUF2435) 83.7
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 83.07
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 82.91
KOG2549576 consensus Transcription initiation factor TFIID, s 82.68
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 82.45
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 82.41
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 82.37
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 82.21
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 82.07
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 81.61
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 81.51
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-51  Score=469.91  Aligned_cols=451  Identities=24%  Similarity=0.261  Sum_probs=365.7

Q ss_pred             hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHH
Q 041545           18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKL   97 (554)
Q Consensus        18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq   97 (554)
                      +-.++.+.+++++..+++.++++.-+|+                     +.+.+.|.++++.+..+++..+..++..-.+
T Consensus      1092 ~~~~~~~~l~~~~~~~~~r~~~s~v~~~---------------------k~~~~~~~~l~~~i~~li~~~d~~s~e~~a~ 1150 (1621)
T KOG1837|consen 1092 AKNTPSQKLLHVLADTMQRCVLSVVQYQ---------------------KLDENLTGAVLLLIGELIRSHDMRSTEHHAT 1150 (1621)
T ss_pred             hccCccHHHHHHHHHHHHHHHHHHHhHH---------------------HHhhhhhhhhhhHHHHHHHHhccCCchHHHH
Confidence            4456778888888888887777766543                     4558999999999999999888777888888


Q ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHH--HHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhh
Q 041545           98 TAVSTLEVLANRFASYDSVFNLCLASV--TNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTY  175 (554)
Q Consensus        98 ~Al~~L~~lA~~~g~~~~~~~~~L~~v--~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~  175 (554)
                      .|+.|+-.++.+|....+.|..+++.+  ..+++++...++.++++|....+.+++...+++.|+++++.+.++.+..  
T Consensus      1151 ~~~~~l~~~~~~~~a~~~~~~~~i~~va~~~~~~~~~~~vr~ss~~~~~~~~~tLl~~~~~~~~~v~~~s~~~~~~st-- 1228 (1621)
T KOG1837|consen 1151 SALKTLLVTAQRFIARFSKFQYDIAAVAGAGGLGNSGHRVRQSSLGGNTFGSDTLLICSLTCIQRVVDQSASFFDEST-- 1228 (1621)
T ss_pred             HHHHHHHHHHHHhhhcccccccchhhhccccCcCcchhhhhhhhhhhhhcccHHHHHhhhhhhhhhhhHHHHHHHHhc--
Confidence            999999999998887655455444433  4567778899999999999999999999999999999999998776521  


Q ss_pred             hhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHH
Q 041545          176 VDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIV  255 (554)
Q Consensus       176 ~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~  255 (554)
                              ++..++..-++++..++.-+..-.+.+-+||.+ +     +.+.+..+.+..+.+|..++++++++.+|   
T Consensus      1229 --------~d~~~~~~eLl~~s~l~~~~~vl~~~~ss~~~~-~-----l~~~~~~~~a~e~~sr~~sl~~lla~~i~--- 1291 (1621)
T KOG1837|consen 1229 --------GDVIIRLCELLARSGLPSFLLVLNQPSSSLTAA-G-----LGSKTVIDFASELDSRLLSLIELLATMIP--- 1291 (1621)
T ss_pred             --------cCcchhHHHHHHHHHHHHHHHhhccCccccchh-h-----ccchhhhhhHHHHHHHHHHHHHHHhcccc---
Confidence                    133334444444444443333333333334444 2     23344444566888899999999999999   


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhh
Q 041545          256 LIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLR  335 (554)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R  335 (554)
                                          +|.+++++...|+++...+...++.+++++++++..|+|+++..+++.++++|+.+||+|
T Consensus      1292 --------------------~r~~l~~L~~~~~~~~~l~n~~~~~~l~~le~~~~~~~ks~i~s~~~~l~~~~l~~ldfR 1351 (1621)
T KOG1837|consen 1292 --------------------LRLLLQRLKRIYSEASALSNDEVASLLSDLEEAVEIMRKSAITSGCTGLFDLLLIALDFR 1351 (1621)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHhccchHHHHHhhhhhhh
Confidence                                999999999999998888888899999999999999999999999999999999999999


Q ss_pred             hhc-ccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchh
Q 041545          336 RQH-RVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSL  414 (554)
Q Consensus       336 ~~~-~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKsl  414 (554)
                      +++ +...++++.+|.+|+++++.+|+||||++|||+|.++++||.+|++..+  ..+..+|+++||+|++.++|+|||+
T Consensus      1352 ~~~~~~~~e~v~~~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a--~~~~~~Rli~fy~f~~~l~esl~si 1429 (1621)
T KOG1837|consen 1352 SQEAPLFSENVDKLERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKA--EQKCLERLISFYHFADYLQESLKSI 1429 (1621)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCcccc--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            998 6789999999999999999999999999999999999999998754333  3488999999999999999999999


Q ss_pred             hccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhccccccccccchh
Q 041545          415 FVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDST  494 (554)
Q Consensus       415 ftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~  494 (554)
                      |||||+|++++.+.+|+..+   .+....+++-      ..++     .+.-|.++++|+.||.+||.||++. +||+.+
T Consensus      1430 ~~pYf~~~l~~~~~~L~k~n---~s~~~~~~~~------~~~~-----~r~~~~~~~Lvl~cl~~~~~~Dt~~-~f~t~~ 1494 (1621)
T KOG1837|consen 1430 VTPYFGYLLEPRVILLKKIN---ASKHRWFWLL------PVNQ-----SRKPLLLGTLVLNCLKDLFLFDTIE-SFVTKS 1494 (1621)
T ss_pred             HHHHHHHHhhHHHHHHHHhh---hhhhhhhhhh------cccc-----cchhHHHHHHHHHHHHHHHhhhhhH-HHHhhh
Confidence            99999999999999999987   3322111110      0001     2345889999999999999999954 699999


Q ss_pred             hHhhhHHHHHHHhhcCCCCCcccccCCCchhhhhhhhHHHHHHHHHhhCCccccccccCC
Q 041545          495 NFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE  554 (554)
Q Consensus       495 rf~~l~~pLv~QL~~~~~~~~~~~~~~~~~~~~~~~lvpci~~la~a~~~d~lwK~LN~~  554 (554)
                      ||+.++.|+|+|+.|..++.       ...++|.++++|||+++++|.+||  |||||||
T Consensus      1495 r~~~~~~p~v~ql~n~~~e~-------~~~~~v~~~li~~i~~~~~a~~~d--~~pl~~k 1545 (1621)
T KOG1837|consen 1495 RFELLSYPLVSQLVNVLLEF-------YASDIVSKLLIAEIASDSVADKDD--LKPLNQK 1545 (1621)
T ss_pred             hhhhhhhhhHHHHHHhhccc-------hhhhHHHHHHHHHHHhhccCChhh--hHHHHHH
Confidence            99999999999999964432       235679999999999999998888  9999985

>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins [] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.1 bits (155), Expect = 9e-11
 Identities = 81/602 (13%), Positives = 168/602 (27%), Gaps = 179/602 (29%)

Query: 38  VKDL------DMAKPKHKRRRELD-----PDSNSRWFHLDDSAFESFRKMCSEVVLLVDN 86
           V +       DM K    +  E+D      D+ S    L    F +      E+V     
Sbjct: 30  VDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVE 84

Query: 87  STGESNISLKLTAVSTL----EVLANRFASY-DSVFNLCLASVTNSISSRNL-------- 133
                N    ++ + T      ++   +    D ++N          +  N+        
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLK 139

Query: 134 ---ALASSCLRTTGALV---------NVLGLKALAELPLIME--------NVRKKSREIS 173
              AL    LR    ++           + L       +  +        N++  +   +
Sbjct: 140 LRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 174 TYVDVQN---ESNEDKTQRESLMASVLITLEAVIDKLGGFL--NPYLGDITELLVL---- 224
               +Q    + + + T R    +++ + + ++  +L   L   PY      LLVL    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVLLNVQ 254

Query: 225 CPEYLPGSDPKLKV--------KADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLV 276
             +     +   K+          D +    T  I +      L  D     LL  L   
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 277 RLALPP-LLKIYSGAVDAGDSSLVIAF--EILGNIISRMDRSSIGGF--HGKIFDQCLLA 331
              LP  +L           +   ++   E + + ++  D            I +  L  
Sbjct: 315 PQDLPREVLTT---------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 332 LD---LRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGS 388
           L+    R+        + +   S           +   +       S+ W +    D+  
Sbjct: 366 LEPAEYRKMF----DRLSVFPPSA---------HIPTILL------SLIWFDVIKSDVMV 406

Query: 389 MKSKSIDRAIVF-------YSL----------VNKLAESHRSL--------------FVP 417
           + +K    ++V         S+          +      HRS+               +P
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 418 -----YF-KYLLEGCVQHLTDAKGVNTANSTRKK-------KARIQEAGTIKEQNGSLSI 464
                YF  ++      HL + +        R         + +I+   T    +GS+  
Sbjct: 467 PYLDQYFYSHI----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 465 NHWQLRALVISSLHKCFLYD---------TASLKFLDSTNFQVLLKP---IVSQLAAEPP 512
              QL+       +K ++ D          A L FL      ++      ++ ++A    
Sbjct: 523 TLQQLK------FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL-RIALMAE 575

Query: 513 AG 514
             
Sbjct: 576 DE 577

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.67
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.56
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.52
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.5
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.45
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.45
1qgr_A876 Protein (importin beta subunit); transport recepto 99.38
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.28
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.18
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.11
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.0
2x1g_F971 Cadmus; transport protein, developmental protein, 98.98
2x19_B963 Importin-13; nuclear transport, protein transport; 98.97
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.75
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.75
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.71
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.66
2x1g_F971 Cadmus; transport protein, developmental protein, 98.65
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 98.63
2x19_B963 Importin-13; nuclear transport, protein transport; 98.52
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.47
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.44
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.42
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.34
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 98.31
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 98.16
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.09
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.91
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.9
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 97.76
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.66
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.51
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.45
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.23
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.2
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.17
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.05
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 96.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.93
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.87
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.86
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.83
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.76
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.7
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.68
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.6
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.51
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.51
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.49
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.46
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.42
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.3
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.24
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.23
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.07
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 95.99
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.86
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 95.67
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 95.65
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 95.55
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.31
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 95.24
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.17
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.03
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 94.77
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 94.69
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 94.66
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.22
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.83
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 93.27
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 93.25
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 93.14
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 92.83
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 92.77
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 92.16
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 92.07
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 90.73
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 90.47
3nmz_A458 APC variant protein; protein-protein complex, arma 89.68
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 89.59
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 89.04
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 87.5
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 87.31
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 86.05
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 85.62
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 84.66
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 84.2
3nmz_A458 APC variant protein; protein-protein complex, arma 83.85
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 82.4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=99.67  E-value=1.7e-13  Score=157.81  Aligned_cols=423  Identities=14%  Similarity=0.177  Sum_probs=278.1

Q ss_pred             HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhc----------
Q 041545           16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVD----------   85 (554)
Q Consensus        16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~----------   85 (554)
                      +.++++++..||..|++.+.. +.....                 .|    +.-.++...++|.|...+.          
T Consensus       262 ~~~~~~~~~~vr~~a~e~l~~-l~~~~~-----------------~~----~~~~~~~~~l~p~ll~~l~~~e~d~~~~~  319 (852)
T 4fdd_A          262 LQRTQDQDENVALEACEFWLT-LAEQPI-----------------CK----DVLVRHLPKLIPVLVNGMKYSDIDIILLK  319 (852)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHH-HTTSTT-----------------HH----HHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHccCCcHHHHHHHHHHHHH-Hhcchh-----------------HH----HHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence            457788999999999999874 322110                 01    1114566678888877762          


Q ss_pred             cC--CC--C----ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhch
Q 041545           86 NS--TG--E----SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAE  157 (554)
Q Consensus        86 ~~--~~--~----~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~  157 (554)
                      ..  ++  +    .++.+|.+|..+++.++..+|.  ..+..+++.+.+.+.+++|.+|..++.++|.+++.++..+.|+
T Consensus       320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~  397 (852)
T 4fdd_A          320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY  397 (852)
T ss_dssp             C------------CCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred             CCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            11  11  1    3567899999999999999984  5677889999999988999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhhh-------------hhhhhhccccc-------------chhhHHHHHHHHHHHHHHHHHHhcccc
Q 041545          158 LPLIMENVRKKSREIS-------------TYVDVQNESNE-------------DKTQRESLMASVLITLEAVIDKLGGFL  211 (554)
Q Consensus       158 LP~imP~ll~~l~~~~-------------~~~~~~~~~~~-------------~~d~~~~l~~s~lsaL~~lv~~l~~Fl  211 (554)
                      ++.++|.++..+++..             +..+...+...             -.+.+..+..+++.++..+++..+.-+
T Consensus       398 l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l  477 (852)
T 4fdd_A          398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL  477 (852)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh
Confidence            9999999999987632             11111000000             112345788999999999999999999


Q ss_pred             cccHHHHHHHHh-hccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhh
Q 041545          212 NPYLGDITELLV-LCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGA  290 (554)
Q Consensus       212 sPYL~~il~~l~-l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~  290 (554)
                      .||+++++..+. ....+   .++.....+++| ..+++.++         -.+..      ++|...++|++.+.|..+
T Consensus       478 ~~~l~~ll~~L~~~l~~~---~~~~~~~~~~ai-~~l~~~~~---------~~~~~------~~~~~~l~p~l~~~~~~l  538 (852)
T 4fdd_A          478 VPYLAYILDTLVFAFSKY---QHKNLLILYDAI-GTLADSVG---------HHLNK------PEYIQMLMPPLIQKWNML  538 (852)
T ss_dssp             GGGHHHHHHHHHHHHHHC---CHHHHHHHHHHH-HHHHHHHG---------GGGCC------HHHHHHHHHHHHHHHHHS
T ss_pred             HhHHHHHHHHHHHHHHHh---ChHHHHHHHHHH-HHHHHHhh---------hhhcc------HHHHHHHHHHHHHHHHhc
Confidence            999999998872 22222   123333344555 55555544         00000      233788999999999874


Q ss_pred             hhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhh-------cc--cChhhHHHHHHHHHHHHHHHHH
Q 041545          291 VDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQ-------HR--VSIQDIDIVEKSVISTVISLTM  361 (554)
Q Consensus       291 ~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~-------~~--~~~~~i~~vE~~vi~a~~~lVl  361 (554)
                      . ++...+..++++++..+..++. .+.++.+.++..++..+.-.-.       .+  .+.++. .+-..+++++-.++-
T Consensus       539 ~-d~~~~~~~~~~~l~~i~~~~g~-~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-~~~~~~l~~l~~l~~  615 (852)
T 4fdd_A          539 K-DEDKDLFPLLECLSSVATALQS-GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK-DFMIVALDLLSGLAE  615 (852)
T ss_dssp             C-TTCTTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-HHHHHHHHHHHHHHH
T ss_pred             c-cccHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-hHHHHHHHHHHHHHH
Confidence            4 3444556889999999999887 6677888888887777654210       01  111111 134455666666666


Q ss_pred             hhcccchhhHH-----HHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcc
Q 041545          362 KLTETMFRPLF-----IRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGV  436 (554)
Q Consensus       362 KLsE~tFrPLf-----~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~  436 (554)
                      ++. ..|+|++     ..++-+...+    +    ...-|..+ |.+++.++..+.+-|.||...+++.+.+.|+..+  
T Consensus       616 ~l~-~~~~~~~~~~~~~~~l~~~l~~----~----~~~vr~~a-~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~--  683 (852)
T 4fdd_A          616 GLG-GNIEQLVARSNILTLMYQCMQD----K----MPEVRQSS-FALLGDLTKACFQHVKPCIADFMPILGTNLNPEF--  683 (852)
T ss_dssp             HHG-GGGHHHHHTCCHHHHHHHHTTC----S----SHHHHHHH-HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTS--
T ss_pred             HHh-HhHHHHhcCCcHHHHHHHHhCC----C----ChhHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccc--
Confidence            665 6677764     3333333221    1    23466555 8999999999999999999999999998884421  


Q ss_pred             cccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhccccccccccchhhHhhhHHHHHHHhhcCCCCCcc
Q 041545          437 NTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLE  516 (554)
Q Consensus       437 ~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~rf~~l~~pLv~QL~~~~~~~~~  516 (554)
                       .+    .++                 ...|     .+..+...+.-+-..  |     ...++++|+.-|.+..     
T Consensus       684 -~~----v~~-----------------~a~~-----alg~i~~~~~~~~~p--~-----~~~il~~L~~~l~~~~-----  724 (852)
T 4fdd_A          684 -IS----VCN-----------------NATW-----AIGEISIQMGIEMQP--Y-----IPMVLHQLVEIINRPN-----  724 (852)
T ss_dssp             -HH----HHH-----------------HHHH-----HHHHHHHHHGGGGGG--G-----THHHHHHHHHHHTCSS-----
T ss_pred             -hH----HHH-----------------HHHH-----HHHHHHHHhhHhHHH--H-----HHHHHHHHHHHhCCCC-----
Confidence             00    000                 1123     233333333222111  3     3688999998886532     


Q ss_pred             cccCCCchhhhhhhhHHHHHHHHHh
Q 041545          517 EHLNVPTVKEVDDLLVVCIGQMAVT  541 (554)
Q Consensus       517 ~~~~~~~~~~~~~~lvpci~~la~a  541 (554)
                            ....+.+..+-|||+|+..
T Consensus       725 ------~~~~~~~~a~~~igrl~~~  743 (852)
T 4fdd_A          725 ------TPKTLLENTAITIGRLGYV  743 (852)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHH
T ss_pred             ------CCchHHHHHHHHHHHHHHh
Confidence                  1245677888888888865
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.51
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.3
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.25
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.13
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.91
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.89
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.88
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.88
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.86
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.73
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.59
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.91
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.72
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.6
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 96.67
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.52
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.51
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.4
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 95.65
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 94.07
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.0
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 93.52
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 93.12
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 92.94
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 92.82
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 90.8
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 90.79
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 88.79
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 88.12
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 85.73
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 82.26
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-12  Score=146.07  Aligned_cols=368  Identities=13%  Similarity=0.169  Sum_probs=238.9

Q ss_pred             HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545           76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA  154 (554)
Q Consensus        76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~  154 (554)
                      +++.+..++...-.++++..|.+|+.+++.+++..... .+.+..+++.+++.++++++.+|..+..|+|.++..+....
T Consensus       392 il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~  471 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  471 (888)
T ss_dssp             SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSC
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            34444444443334668999999999999998865443 56788899999999999999999999999999999877665


Q ss_pred             -hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhc-cCCCCCC
Q 041545          155 -LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLC-PEYLPGS  232 (554)
Q Consensus       155 -iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~-~~~~~~~  232 (554)
                       -+|++.++|.++..+.+                .+..++.+++.+|..+++..+..+.||+++++..+... ..+   .
T Consensus       472 ~~~~~~~~l~~ll~~l~d----------------~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~  532 (888)
T d1qbkb_         472 PDTYLKPLMTELLKRILD----------------SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY---Q  532 (888)
T ss_dssp             HHHHTTTHHHHHHHHHSS----------------SCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC---C
T ss_pred             hhhhhhhhHHHHHHHhcC----------------CCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh---h
Confidence             46899999999885543                23568899999999999999999999999999987322 222   2


Q ss_pred             ChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH--HHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHH
Q 041545          233 DPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFI--LHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIIS  310 (554)
Q Consensus       233 ~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~--~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~  310 (554)
                      ++++...++++ ..+++.+.                 ..+  +.+...++|.+.+.|.... +++.....++++++..+.
T Consensus       533 ~~~~~~~~~al-~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~le~l~~i~~  593 (888)
T d1qbkb_         533 HKNLLILYDAI-GTLADSVG-----------------HHLNKPEYIQMLMPPLIQKWNMLK-DEDKDLFPLLECLSSVAT  593 (888)
T ss_dssp             HHHHHHHHHHH-HHHHHHHG-----------------GGGCSHHHHHHHHHHHHHHHTTSC-TTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHhhh-----------------ccccchHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHH
Confidence            34444555565 45554443                 111  1337789999999997633 455567788999999999


Q ss_pred             hcCCCccccchHHHHHHHHHHhhhhhhc-------c--cChhhHHHHHHHHHHHHHHHHHhhc--------ccchhhHHH
Q 041545          311 RMDRSSIGGFHGKIFDQCLLALDLRRQH-------R--VSIQDIDIVEKSVISTVISLTMKLT--------ETMFRPLFI  373 (554)
Q Consensus       311 ~~~~~~i~~~~~~l~~~~l~aLd~R~~~-------~--~~~~~i~~vE~~vi~a~~~lVlKLs--------E~tFrPLf~  373 (554)
                      ..+. .+.++...++..++..+...-..       .  .+..+.+-++. ..+++-.++-.+.        ...|.|++.
T Consensus       594 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~  671 (888)
T d1qbkb_         594 ALQS-GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIV-ALDLLSGLAEGLGGNIEQLVARSNILTLMY  671 (888)
T ss_dssp             HSTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHH-HHHHHHHHHHHHTTTTHHHHHTSCHHHHHH
T ss_pred             HhHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHH-HHHHHHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence            9887 45667777887777765442110       0  11111111111 1122222221121        134555555


Q ss_pred             HHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhc
Q 041545          374 RSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAG  453 (554)
Q Consensus       374 kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~  453 (554)
                      +.....            ...-|..+ |.+++.++..+..-+.||...+++...+.|++..   .+              
T Consensus       672 ~~l~~~------------~~~vr~~a-~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~---~~--------------  721 (888)
T d1qbkb_         672 QCMQDK------------MPEVRQSS-FALLGDLTKACFQHVKPCIADFMPILGTNLNPEF---IS--------------  721 (888)
T ss_dssp             HHHTCS------------SHHHHHHH-HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGG---HH--------------
T ss_pred             HHhCCC------------ChHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCC---HH--------------
Confidence            544311            23467666 7789999999999999999999999888776632   10              


Q ss_pred             ccccccccchhhhHHHHHHHHHHHHHhhccccccccccchhhHhhhHHHHHHHhhcCCCCCcccccCCCchhhhhhhhHH
Q 041545          454 TIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVV  533 (554)
Q Consensus       454 ~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~rf~~l~~pLv~QL~~~~~~~~~~~~~~~~~~~~~~~lvp  533 (554)
                                     .+..++.++.....+-.++  |  ..-.+.+++.|+.-|.+..           ....+.+.+.-
T Consensus       722 ---------------v~~~a~~~ig~ia~~~~~~--~--~py~~~il~~L~~il~~~~-----------~~~~v~~n~~~  771 (888)
T d1qbkb_         722 ---------------VCNNATWAIGEISIQMGIE--M--QPYIPMVLHQLVEIINRPN-----------TPKTLLENTAI  771 (888)
T ss_dssp             ---------------HHHHHHHHHHHHHHHTGGG--G--GGGSHHHHHHHHHHHTCTT-----------CCHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHcCCC-----------ccHHHHHHHHH
Confidence                           0111222222222222221  2  1234667888887776542           12346677888


Q ss_pred             HHHHHHHhhC
Q 041545          534 CIGQMAVTAG  543 (554)
Q Consensus       534 ci~~la~a~~  543 (554)
                      |||.++...+
T Consensus       772 ~lgrl~~~~p  781 (888)
T d1qbkb_         772 TIGRLGYVCP  781 (888)
T ss_dssp             HHHHHHHHCH
T ss_pred             HHHHHHHHCH
Confidence            9998887543
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure