Citrus Sinensis ID: 041546

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
MKSPFSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWRKKNGD
cccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEcccccccHHHHHHHccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEcccccEEEEcccccHHHHHHHHHHcccccHHccccccccEEEEEEEEEEcccEEEcccccccHHHHHHcccccccEEEEEEEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHccccccccccccccccccEEEEEEEEcHHHHccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEccccccEEEEcccHHHHHHHHHHHHcccHHHHHHccccccEEEEEEEEccccEEcHHHHccHHHEEEEcccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHccccccccccccccccHHcccccccccccccHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccc
mkspfspifPFVFALLLSYHIRVtsadfhatsapvaDLESLIQCLsmhsdnssISKVIYTQINSSYSSVLNFSiqnlrfstpntpkpqviitpldVSQVQAAIKCSkkhglqirvrsgghdfeglsyvshVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDArltdangrlldrksMGEDLFWAiqgggigasfgviVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKwqllplmqesfpelgltkedciemswiesahdlagfnkgdpldllldrnsrtngvaedaatngffksksdyvkqpipenafegiydnfyeedgETAFMLLVpyggkmseisesetpyphragnIYQILYTVtwgedetsqSHIDWIRRLYShmtpyvsenpreayinyrdldigtnnrghtsikqasiwgskyFKNNFKRLVHVKTMvdpydffkneqsippltswrkkngd
MKSPFSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKcskkhglqIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATkivhkwqllpLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNgvaedaatngffksksdyvkQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYdffkneqsippltswrkkngd
MKSPFSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWRKKNGD
******PIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDR***********ATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKM*********YPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKN****************
******P**PFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSI************
MKSPFSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWRKKNGD
****FSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPL*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKSPFSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWRKKNGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query490 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.881 0.794 0.462 1e-127
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.920 0.827 0.456 1e-127
A6P6W0545 Cannabidiolic acid syntha N/A no 0.920 0.827 0.450 1e-125
A6P6W1545 Cannabidiolic acid syntha N/A no 0.912 0.820 0.441 1e-125
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.912 0.820 0.447 1e-124
Q9SVG4570 Reticuline oxidase-like p no no 0.873 0.750 0.409 1e-100
P30986538 Reticuline oxidase OS=Esc N/A no 0.873 0.795 0.376 5e-89
P93479535 Reticuline oxidase OS=Pap N/A no 0.877 0.803 0.367 1e-87
O06997447 Uncharacterized FAD-linke yes no 0.751 0.823 0.246 2e-17
Q796Y5451 Uncharacterized FAD-linke no no 0.736 0.800 0.225 3e-15
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/527 (46%), Positives = 318/527 (60%), Gaps = 95/527 (18%)

Query: 39  ESLIQCLSMHSDNSSIS-KVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVS 97
           E+ ++C S +  N++ + K++YTQ N  Y SVLN +I NLRF++  TPKP VI+TP  VS
Sbjct: 32  ENFLKCFSQYIPNNATNLKLVYTQNNPLYMSVLNSTIHNLRFTSDTTPKPLVIVTPSHVS 91

Query: 98  QVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQA 157
            +Q  I CSKK GLQIR RSGGHD EG+SY+S VPFV++DL N+  I +D   QTAWV+A
Sbjct: 92  HIQGTILCSKKVGLQIRTRSGGHDSEGMSYISQVPFVIVDLRNMRSIKIDVHSQTAWVEA 151

Query: 158 GATLGQLYYRIAEKRYG-----------------------AMLRKYGLAADNIVDARLTD 194
           GATLG++YY + EK                           ++R YGLAADNI+DA L +
Sbjct: 152 GATLGEVYYWVNEKNENLSLAAGYCPTVCAGGHFGGGGYGPLMRNYGLAADNIIDAHLVN 211

Query: 195 ANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNAT 253
            +G++LDRKSMGEDLFWA++GGG   SFG+IV WK+RLV VP + T F V + +E     
Sbjct: 212 VHGKVLDRKSMGEDLFWALRGGG-AESFGIIVAWKIRLVAVPKS-TMFSVKKIMEIHELV 269

Query: 254 KIVHKWQ----------------------------------------------LLPLMQE 267
           K+V+KWQ                                              L+ LM +
Sbjct: 270 KLVNKWQNIAYKYDKDLLLMTHFITRNITDNQGKNKTAIHTYFSSVFLGGVDSLVDLMNK 329

Query: 268 SFPELGLTKEDCIEMSWIESA--------HDLAGFNKGDPLDLLLDRNSRTNGVAEDAAT 319
           SFPELG+ K DC ++SWI++         +D   FNK    ++LLDR+         A  
Sbjct: 330 SFPELGIKKTDCRQLSWIDTIIFYSGVVNYDTDNFNK----EILLDRS---------AGQ 376

Query: 320 NGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRA 379
           NG FK K DYVK+PIPE+ F  I +  YEED       L PYGG M EISES  P+PHRA
Sbjct: 377 NGAFKIKLDYVKKPIPESVFVQILEKLYEEDIGAGMYALYPYGGIMDEISESAIPFPHRA 436

Query: 380 GNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNN-RGH 438
           G +Y++ Y  +W + E ++ H++WIR +Y+ MTPYVS+NPR AY+NYRDLDIG N+ +  
Sbjct: 437 GILYELWYICSWEKQEDNEKHLNWIRNIYNFMTPYVSKNPRLAYLNYRDLDIGINDPKNP 496

Query: 439 TSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWR 485
            +  QA IWG KYF  NF RLV VKT+VDP +FF+NEQSIPPL   R
Sbjct: 497 NNYTQARIWGEKYFGKNFDRLVKVKTLVDPNNFFRNEQSIPPLPRHR 543
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
224110866533 predicted protein [Populus trichocarpa] 0.946 0.870 0.542 1e-160
224108834533 predicted protein [Populus trichocarpa] 0.946 0.870 0.542 1e-159
224108830533 predicted protein [Populus trichocarpa] 0.946 0.870 0.540 1e-159
224122386533 predicted protein [Populus trichocarpa] 0.889 0.818 0.553 1e-158
224103509531 predicted protein [Populus trichocarpa] 0.9 0.830 0.551 1e-158
224122382534 predicted protein [Populus trichocarpa] 0.889 0.816 0.560 1e-157
224061593531 predicted protein [Populus trichocarpa] 0.902 0.832 0.541 1e-157
224056831533 predicted protein [Populus trichocarpa] 0.930 0.855 0.528 1e-157
224115242527 predicted protein [Populus trichocarpa] 0.9 0.836 0.548 1e-156
224056783533 predicted protein [Populus trichocarpa] 0.885 0.814 0.553 1e-156
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/553 (54%), Positives = 371/553 (67%), Gaps = 89/553 (16%)

Query: 1   MKSPFSPIFPFVFALLLSYHIRVTSADFHATSAPVADLESLIQCLSMHS-DNSSISKVIY 59
           M S  S + PF+  LL S    VTSA  H         E  +QCLS+HS D+++ISKVIY
Sbjct: 1   MTSMSSSMLPFLICLLFSLSC-VTSARPH---------EDFLQCLSLHSEDSTAISKVIY 50

Query: 60  TQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGG 119
           T  NSSYSS+L+F+I+N RF++    KP VI+TP D S +QAAI CS+KH L+IR+RSGG
Sbjct: 51  TPKNSSYSSILHFAIRNPRFNSSEL-KPFVIVTPTDASHIQAAIHCSQKHKLEIRIRSGG 109

Query: 120 HDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEK-------- 171
           HDFEGLSY+S VPFV++DL+NL  I+VDA  +TAWVQAGATLG+LYYRIAEK        
Sbjct: 110 HDFEGLSYMSTVPFVIVDLINLRSITVDATNKTAWVQAGATLGELYYRIAEKSRTLAFPA 169

Query: 172 ---------------RYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGG 216
                           YG + RKYGLA+DN++DA+L DA GR+LDR+SMGEDLFWAI+GG
Sbjct: 170 GSCPTIGVGGHFSGGGYGTISRKYGLASDNVIDAQLIDAKGRILDRESMGEDLFWAIRGG 229

Query: 217 GIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKW----------------- 259
           G G SFGV++ W+++LV VP  VT F  +R+LEQNATK++H+W                 
Sbjct: 230 G-GQSFGVVIAWRIKLVEVPPKVTVFTAARTLEQNATKLIHRWQYVANQLPEDIIIDVLV 288

Query: 260 --------------------------QLLPLMQESFPELGLTKEDCIEMSWIESAHDLAG 293
                                     QLL LMQESFPELGL K++C EMSWIES   + G
Sbjct: 289 NRVNSSEEGKSTIQAAFFSLFLGEVDQLLLLMQESFPELGLAKDECTEMSWIESVIYIIG 348

Query: 294 FNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGET 353
           F     L++LLDR  +   +         FK+KSDYV++PIPE AFEGI+  F+E+D E 
Sbjct: 349 FPSNASLNVLLDRTPQPPSLQ--------FKAKSDYVQEPIPEIAFEGIWKRFFEKDIEV 400

Query: 354 AFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGED--ETSQSHIDWIRRLYSHM 411
               ++PYGGKM EISES TP+PHRAGN Y  +  V+W E+  E SQ H+ WIRRLY +M
Sbjct: 401 PEFFMLPYGGKMDEISESSTPFPHRAGNRYIFVPVVSWSEETKEASQRHLAWIRRLYRYM 460

Query: 412 TPYVSENPREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDF 471
           TPYVS+NPR AY+NYRDLD+G NN G+TS KQASIWG KYFKNNF RLV VKT VDP +F
Sbjct: 461 TPYVSKNPRAAYVNYRDLDLGVNNLGYTSYKQASIWGRKYFKNNFDRLVRVKTEVDPTNF 520

Query: 472 FKNEQSIPPLTSW 484
           F+NEQSIPPL+SW
Sbjct: 521 FRNEQSIPPLSSW 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061593|ref|XP_002300557.1| predicted protein [Populus trichocarpa] gi|222847815|gb|EEE85362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056783|ref|XP_002299021.1| predicted protein [Populus trichocarpa] gi|222846279|gb|EEE83826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.436 0.395 0.504 7.3e-121
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.428 0.394 0.452 5.1e-120
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.430 0.396 0.504 2.2e-119
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.426 0.392 0.471 1e-117
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.477 0.439 0.460 4e-116
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.436 0.394 0.478 8.2e-116
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.479 0.440 0.426 2.8e-115
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.469 0.433 0.492 1.5e-114
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.426 0.396 0.417 2.4e-112
TAIR|locus:2121544539 AT4G20840 [Arabidopsis thalian 0.487 0.443 0.407 3.5e-111
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 585 (211.0 bits), Expect = 7.3e-121, Sum P(3) = 7.3e-121
 Identities = 114/226 (50%), Positives = 153/226 (67%)

Query:   258 KWQLLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDA 317
             K  LL +M+++FPELGLT++DC EMSWIE+A    GF  G P+++LL   S    + +D 
Sbjct:   324 KGTLLKVMEKAFPELGLTQKDCTEMSWIEAALFHGGFPTGSPIEILLQLKSP---LGKD- 379

Query:   318 ATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPH 377
                 +FK+ SD+VK+PIP    +GI+    E  G T F+   PYGG MS+I ES  P+PH
Sbjct:   380 ----YFKATSDFVKEPIPVIGLKGIFKRLIE--GNTTFLNWTPYGGMMSKIPESAIPFPH 433

Query:   378 RAGNIYQILYTVTWGE-DETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTN-N 435
             R G +++ILY   W E D+TS   I+WI+ +Y++M PYVS NPR+AY+NYRDLD G N N
Sbjct:   434 RNGTLFKILYYANWLENDKTSSRKINWIKEIYNYMAPYVSSNPRQAYVNYRDLDFGQNKN 493

Query:   436 RGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
                 +  +A IWG KYFK NF RLV +KT VDP +FF++EQSIPP+
Sbjct:   494 NAKVNFIEAKIWGPKYFKGNFDRLVKIKTKVDPENFFRHEQSIPPM 539
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121544 AT4G20840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.03410009
hypothetical protein (533 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 7e-24
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 9e-20
pfam0803145 pfam08031, BBE, Berberine and berberine like 4e-16
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 5e-04
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.004
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 96.9 bits (242), Expect = 7e-24
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 26/139 (18%)

Query: 87  PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-S 145
           P  ++ P    +V A ++ + ++GL + VR GG    G + ++    VV+DL  L+ I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLT--GGVVLDLSRLNGILE 58

Query: 146 VDAAEQTAWVQAGATLGQLYYRIAEKRY-----------------------GAMLRKYGL 182
           +D  + TA V+AG TLG L   +A K                         G    +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 183 AADNIVDARLTDANGRLLD 201
             DN++   +  A+G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 490
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.97
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.96
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.96
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.96
KOG1231505 consensus Proteins containing the FAD binding doma 99.95
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.95
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.95
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.95
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.94
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.92
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.91
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.89
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK11183564 D-lactate dehydrogenase; Provisional 99.83
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.83
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.82
KOG1232511 consensus Proteins containing the FAD binding doma 99.79
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.76
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.71
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.7
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.69
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.65
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.6
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.43
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.23
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.13
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.7
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 95.39
PLN00107257 FAD-dependent oxidoreductase; Provisional 95.02
PRK09799258 putative oxidoreductase; Provisional 94.91
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.42
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 93.19
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 91.08
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 90.9
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 90.81
PLN02906 1319 xanthine dehydrogenase 90.08
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 88.36
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 87.45
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 87.39
PLN00192 1344 aldehyde oxidase 84.32
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-33  Score=299.30  Aligned_cols=170  Identities=21%  Similarity=0.318  Sum_probs=152.3

Q ss_pred             ccCCCCCCCccEEEecCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCc-------EEEeC
Q 041546           78 RFSTPNTPKPQVIITPLDVSQVQAAIKCSK--KHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSE-------ISVDA  148 (490)
Q Consensus        78 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~--~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~-------i~vd~  148 (490)
                      .|.......|.+|++|++++||+++|++|+  +++++|.+||+||++.|.+...+  |++|||++|++       +++|.
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~  133 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG  133 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence            477666779999999999999999999997  67999999999999998887755  99999999999       36788


Q ss_pred             CCCEEEEcCCCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCc
Q 041546          149 AEQTAWVQAGATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSM  205 (490)
Q Consensus       149 ~~~~v~v~aG~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~  205 (490)
                      +..+|+|++|++|.++++++.++|                      +|..+.+||..+|+|++++||+++|++++ +..+
T Consensus       134 ~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~  213 (525)
T PLN02441        134 DGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQ  213 (525)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCC
Confidence            889999999999999999999998                      45567899999999999999999999998 6778


Q ss_pred             chhhhhhhccccCCCceEEEEEEEEEEEecCCeEEEEEEeechhhH
Q 041546          206 GEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQN  251 (490)
Q Consensus       206 ~~dLf~a~rG~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~~~~~  251 (490)
                      |+|||||+|||+  |+|||||+++||++|.|+.+..+.+.+..-+.
T Consensus       214 n~DLF~Av~Ggl--G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~  257 (525)
T PLN02441        214 NSDLFFAVLGGL--GQFGIITRARIALEPAPKRVRWIRVLYSDFST  257 (525)
T ss_pred             ChhHHHhhccCC--CCcEEEEEEEEEEEecCCceEEEEEEcCCHHH
Confidence            999999999999  99999999999999999987777776654333

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-127
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-104
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-102
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-90
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-90
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 4e-90
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-90
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-90
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-90
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 4e-89
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 4e-17
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 5e-15
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 1e-13
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-13
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 5e-12
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 1e-07
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 1e-07
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 2e-07
1wve_A520 P-Cresol Methylhydroxylase: Alteration Of The Struc 2e-04
1dii_A521 Crystal Structure Of P-Cresol Methylhydroxylase At 2e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/519 (46%), Positives = 313/519 (60%), Gaps = 86/519 (16%)
Query: 39  ESLIQCLSMH-SDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVS 97
           E+ ++C S H  +N +  K++YTQ +  Y S+LN +IQNLRF +  TPKP VI+TP + S
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 98  QVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQA 157
            +QA I CSKK GLQIR RSGGHD EG+SY+S VPFVV+DL N+  I +D   QTAWV+A
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 158 GATLGQLYYRIAEKRYG-----------------------AMLRKYGLAADNIVDARLTD 194
           GATLG++YY I EK                          A++R YGLAADNI+DA L +
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 195 ANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNAT 253
            +G++LDRKSMGEDLFWAI+GGG G +FG+I  WK++LV VPS  T F V +++E     
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243
Query: 254 KIVHKWQ----------------------------------------------LLPLMQE 267
           K+ +KWQ                                              L+ LM +
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303
Query: 268 SFPELGLTKEDCIEMSWIESAHDLAG---FNKGD-PLDLLLDRNSRTNGVAEDAATNGFF 323
           SFPELG+ K DC E SWI++    +G   FN  +   ++LLDR+         A     F
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRS---------AGKKTAF 354
Query: 324 KSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIY 383
             K DYVK+PIPE A   I +  YEED      +L PYGG M EISES  P+PHRAG +Y
Sbjct: 355 SIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMY 414
Query: 384 QILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIG-TNNRGHTSIK 442
           ++ YT +W + E ++ HI+W+R +Y+  TPYVS+NPR AY+NYRDLD+G TN+    +  
Sbjct: 415 ELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYT 474
Query: 443 QASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
           QA IWG KYF  NF RLV VKT VDP +FF+NEQSIPPL
Sbjct: 475 QARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of The Flavoprotein Subunit Upon Its Binding To The Cytochrome Subunit Length = 520 Back     alignment and structure
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution Length = 521 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-174
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-166
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-144
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-143
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-142
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-141
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-134
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-134
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 4e-91
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 2e-34
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 3e-28
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-16
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-12
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-12
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-11
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 5e-07
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 3e-06
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 8e-06
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  500 bits (1288), Expect = e-174
 Identities = 241/519 (46%), Positives = 311/519 (59%), Gaps = 86/519 (16%)

Query: 39  ESLIQCLSMHSDNS-SISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVS 97
           E+ ++C S H  N+ +  K++YTQ +  Y S+LN +IQNLRF +  TPKP VI+TP + S
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64

Query: 98  QVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQA 157
            +QA I CSKK GLQIR RSGGHD EG+SY+S VPFVV+DL N+  I +D   QTAWV+A
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124

Query: 158 GATLGQLYYRIAEKR-----------------------YGAMLRKYGLAADNIVDARLTD 194
           GATLG++YY I EK                        YGA++R YGLAADNI+DA L +
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184

Query: 195 ANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNAT 253
            +G++LDRKSMGEDLFWAI+GGG G +FG+I  WK++LV VPS  T F V +++E     
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243

Query: 254 KIVHKWQ----------------------------------------------LLPLMQE 267
           K+ +KWQ                                              L+ LM +
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303

Query: 268 SFPELGLTKEDCIEMSWIESAHDLAGFNKGD----PLDLLLDRNSRTNGVAEDAATNGFF 323
           SFPELG+ K DC E SWI++    +G    +      ++LLDR+         A     F
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRS---------AGKKTAF 354

Query: 324 KSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIY 383
             K DYVK+PIPE A   I +  YEED      +L PYGG M EISES  P+PHRAG +Y
Sbjct: 355 SIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMY 414

Query: 384 QILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNN-RGHTSIK 442
           ++ YT +W + E ++ HI+W+R +Y+  TPYVS+NPR AY+NYRDLD+G  N     +  
Sbjct: 415 ELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYT 474

Query: 443 QASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
           QA IWG KYF  NF RLV VKT VDP +FF+NEQSIPPL
Sbjct: 475 QARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.97
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.97
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.96
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.96
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.95
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.95
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.94
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.93
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.92
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.92
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.91
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.89
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.89
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.88
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.82
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.54
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.31
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.46
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.17
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.17
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.09
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.46
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.36
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 80.29
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=2.2e-85  Score=699.98  Aligned_cols=438  Identities=55%  Similarity=0.974  Sum_probs=375.9

Q ss_pred             ChhhHHHHHhcCCCCCC-CcceEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEE
Q 041546           37 DLESLIQCLSMHSDNSS-ISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRV  115 (490)
Q Consensus        37 ~~~~~~~~l~~~~~~~~-~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v  115 (490)
                      ..++|++||+.+...+. +++.|++|+++.|++.+.++++|.||+....++|.+||+|++++||+++|++|+++++|+.+
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            35789999998876666 89999999999999998888999999998889999999999999999999999999999999


Q ss_pred             EcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHHHHHHHHhhc-----------------------
Q 041546          116 RSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEKR-----------------------  172 (490)
Q Consensus       116 ~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~l~~~l~~~g-----------------------  172 (490)
                      ||||||+.+.+.....++++|||++|++|++|.++++|+||||+++++|+++|.++|                       
T Consensus        83 rggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg  162 (518)
T 3vte_A           83 RSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGG  162 (518)
T ss_dssp             ESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCC
T ss_pred             ECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCC
Confidence            999999998875322249999999999999999999999999999999999999874                       


Q ss_pred             cCCccccccccccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEEEEEEEEEEEecCCeEEEEEEeechh-hH
Q 041546          173 YGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QN  251 (490)
Q Consensus       173 ~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~~~-~~  251 (490)
                      +|+++++||+++|+|++++||++||++++.+.+++|||||+|||+ +|+|||||+++|||+|.|+.++.|.+.+..+ ++
T Consensus       163 ~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg-~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~  241 (518)
T 3vte_A          163 YGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG  241 (518)
T ss_dssp             CCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSC-GGGTCEEEEEEEECEECCSCEEEEEEEECCCHHH
T ss_pred             CccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheeccc-CCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHH
Confidence            788899999999999999999999999976557899999999984 4999999999999999999888888887654 56


Q ss_pred             HHHHHHHHhhcc--------------c--------------------------------ccccCCCCCCCCCccccccce
Q 041546          252 ATKIVHKWQLLP--------------L--------------------------------MQESFPELGLTKEDCIEMSWI  285 (490)
Q Consensus       252 ~~~~~~~~~~~~--------------~--------------------------------~~~~~p~l~~~~~~~~~~~~~  285 (490)
                      +.+++.+||++.              .                                +...+|+++....+|.+++|+
T Consensus       242 ~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~  321 (518)
T 3vte_A          242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI  321 (518)
T ss_dssp             HHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHH
T ss_pred             HHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchh
Confidence            788999999621              0                                011244555444567777888


Q ss_pred             eeeeeecCCCCC-Cc---hhhhhhcccCCccccccccCCCcccccccCCCCCCCHHHHHHHHHHHhhcCCceeEEEEEec
Q 041546          286 ESAHDLAGFNKG-DP---LDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPY  361 (490)
Q Consensus       286 ~s~~~~~g~~~~-~~---~~~ll~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~~~~~  361 (490)
                      +++.++++.+.+ .+   ++.++++.+.         ...|||.||+|+++++++++++.+++++.+.+...+.+++++|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~  392 (518)
T 3vte_A          322 DTTIFYSGVVNFNTANFKKEILLDRSAG---------KKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPY  392 (518)
T ss_dssp             HHHHHTSSSCCC-----CGGGGGCTTCS---------CCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEEC
T ss_pred             hhhhhhhcCCccCCccchhhhhccCCcC---------cccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeec
Confidence            777776665543 44   5556655432         3457789999999999999999999998875433488999999


Q ss_pred             CCccccCCCCCCCCcccCCcEEEEEEEEEeCCCccchHHHHHHHHHHHhccccccCCCCccccccCCCccC-CCCCCCcc
Q 041546          362 GGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIG-TNNRGHTS  440 (490)
Q Consensus       362 GG~~~~v~~~~tafphR~~~~~~i~~~~~w~~~~~~~~~~~wi~~~~~~l~p~~~~~~~~aY~Ny~d~d~~-~~~~~~~s  440 (490)
                      ||+|++|++++||||||++++|.+++.+.|.+++.++++++|++++++.|.||++++++++|+||+|.|++ .+..++++
T Consensus       393 GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~  472 (518)
T 3vte_A          393 GGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNN  472 (518)
T ss_dssp             CGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCC
T ss_pred             CccccCCCCCCCcccccCcceEEEEEEEecCCcchhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccc
Confidence            99999999999999999966899999999988788889999999999999999877788999999999988 55456788


Q ss_pred             hhhhhhhhhhhhcccHHHHHHhHhccCCCCCCcCCCCCCCcccc
Q 041546          441 IKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSW  484 (490)
Q Consensus       441 ~~~~~~~g~~yfg~n~~RL~~vK~kyDP~n~F~~~qsI~p~~~~  484 (490)
                      |++++.|+.+|||+||+||++||+||||+|||+++|||||+++|
T Consensus       473 ~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~~  516 (518)
T 3vte_A          473 YTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPH  516 (518)
T ss_dssp             HHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCTT
T ss_pred             hhhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999774
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 490
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 4e-12
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 8e-09
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 63.0 bits (152), Expect = 4e-12
 Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 32/178 (17%)

Query: 86  KPQVIITPLDVSQVQAAIKCSKKH---GLQIRVRSGGHDFEGLSYVSHVPFVVIDLLN-- 140
            P  ++ P     + A +  +         I  R  GH   G ++      V +  L   
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 141 --LSEISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAML--------------------- 177
                I+V A  +            +      +                           
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQ 148

Query: 178 -RKYGLAADNIVDARLTDANGRLLD-RKSMGEDLFWAIQGGGIGASFGVIVPWKVRLV 233
             ++G    N+++  +   +G ++   K +  DLF A+ GG     FGVI   ++ + 
Sbjct: 149 AFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGG--LGQFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.98
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.94
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.93
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.82
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.69
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.58
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.14
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.92
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.46
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.83
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.55
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 89.75
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.98  E-value=2.9e-32  Score=256.24  Aligned_cols=154  Identities=18%  Similarity=0.309  Sum_probs=140.9

Q ss_pred             ccCCCCCCCccEEEecCCHHHHHHHHHHHHhc---CCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE------EEeC
Q 041546           78 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKH---GLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI------SVDA  148 (490)
Q Consensus        78 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~---~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i------~vd~  148 (490)
                      .|......+|.+|++|+|++||+++|++|+++   ++|+++|||||++.+.+...+  +|+|||++||+|      ++|.
T Consensus        21 d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id~   98 (206)
T d1w1oa2          21 DFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVSA   98 (206)
T ss_dssp             CTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEECT
T ss_pred             CcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEec
Confidence            45554567999999999999999999999997   699999999999998877654  899999999985      6899


Q ss_pred             CCCEEEEcCCCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCc
Q 041546          149 AEQTAWVQAGATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSM  205 (490)
Q Consensus       149 ~~~~v~v~aG~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~  205 (490)
                      +..+++||+|+++.+|.++|.++|                      +|..+++||+.+|+|+++|+|++||++++ ++.+
T Consensus        99 ~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~~~  178 (206)
T d1w1oa2          99 DGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL  178 (206)
T ss_dssp             TSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSS
T ss_pred             CCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECCCC
Confidence            999999999999999999999998                      66678899999999999999999999997 6678


Q ss_pred             chhhhhhhccccCCCceEEEEEEEEEEEec
Q 041546          206 GEDLFWAIQGGGIGASFGVIVPWKVRLVIV  235 (490)
Q Consensus       206 ~~dLf~a~rG~~~~g~fGIIt~~~lkl~p~  235 (490)
                      ++||||++||++  |+|||||+++|||+|+
T Consensus       179 ~~dl~~a~~g~~--G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         179 NADLFDAVLGGL--GQFGVITRARIAVEPA  206 (206)
T ss_dssp             SHHHHHHHTTCT--TCSEEEEEEEEEEEEC
T ss_pred             CHHHHHHHhhCC--CccEeEEEEEEEEEcC
Confidence            899999999999  9999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure